Corynebacterium deserti GIMN1.010 plasmid pCdes2, complete sequence.
type: Entry
definition: Corynebacterium deserti GIMN1.010 plasmid pCdes2, complete sequence.
sequence version: NZ_CP009222.1
sequence date: 2022-12-23
sequence: sequence
division: CON
label: NZ_CP009222.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02950576
keyword: RefSeq
source: Corynebacterium deserti GIMN1.010
organism: Corynebacterium deserti GIMN1.010
taxonomy: Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP009222.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.8\nGenome Coverage :: 89.9x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/23/2022 01:56:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,854\nCDSs (total) :: 2,774\nGenes (coding) :: 2,716\nCDSs (with protein) :: 2,716\nGenes (RNA) :: 80\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 3\nPseudo Genes (total) :: 58\nCDSs (without protein) :: 58\nPseudo Genes (ambiguous residues) :: 0 of 58\nPseudo Genes (frameshifted) :: 29 of 58\nPseudo Genes (incomplete) :: 39 of 58\nPseudo Genes (internal stop) :: 18 of 58\nPseudo Genes (multiple problems) :: 23 of 58\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 30739
topology: circular
so has quality: SO_0000988
location: 1..30739
location: region:1-30739:1
RO_0002162: 931089

NZ_CP009222
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02950576
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Corynebacterium deserti GIMN1.010 (=DSM 45689), isolated from desert sand in western China
author: Ruckert, C.
author: Albersmeier, A.
author: Kalinowski, J.
journal: Unpublished

2
title: Direct Submission
author: Ruckert, C.
author: Albersmeier, A.
author: Kalinowski, J.
journal: Submitted (11-AUG-2014) CeBiTec, Bielefeld University, Universitaetsstr. 27, Bielefeld, NRW 33615, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30739:1
position: 30739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-30739:1:source
so part of: sequence
organism: Corynebacterium deserti GIMN1.010
mol type: genomic DNA
strain: GIMN1.010
isolation source: mixed sand sample
culture collection: DSM:45689
type material: type strain of Corynebacterium deserti
plasmid: pCdes2
country: China: western desert
collection date: 2011

931089
type: Taxonomy
SIO_000068: taxonomy

CDES_RS13755
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13755
old locus tag: CDES_14370
so part of: sequence
location: join(30711..30739,1..1351)
location: region:1-30739:1
so has part: feature:30711-30739:1:exon
so has part: feature:1-1351:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:30711-30739:1:exon

position:30711:1
position: 30711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-1351:1:exon

position:1351:1
position: 1351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CDES_RS13755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13755
old locus tag: CDES_14370
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: RNA-guided endonuclease TnpB family protein
translation: MSTIRGSGPLAIVWARDFDKNYITPERNRHKHAAQRIAAGENPATVWNPDEERFNEPWLHTANRRVLRSGQKQYEQALDNFFKSQNGSRAGQKMGKPRFKTKTRSTDSFTIDAVDISSSTMIIRDIGPKDHARYKTGEASTGLIADYRHVRLSHLGTFRVFGSTKVLVRQLDRGGRIKSCTVSRSADRWYVSFLVELPTEITRSTPTKKQYKAGAVGVDLGVKSLASLSTGEIIPNPRFLRTADKKIKRLQRKIARCQKGSKNSIRLKRRLARCHHELALQRAGYLNELTSMLASSFSAIALEDLNVAGMTSSARGTVENPGKNVKQKAGLNRSILDISPGRIRTLLEYKCADRGVEMQVIDRFFPSSQLCSSCGSKTTIPLAKRIYHCDVCGGVIDRDVNAAINIVYEAKRLVEQKCSEHSAPEGAEDKRPWSVHLPSTQYVDGLHTRKRQGPSGHSS
SIO_010081: CDES_RS13755
subclass of: SO_0000673
so part of: CDES_RS13755
location: join(30711..30739,1..1351)
location: region:1-30739:1
so has part: feature:30711-30739:1:exon
so has part: feature:1-1351:1:exon

WP_156323099.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30711-30739:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-1351:1:exon

CDES_RS13760
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13760
old locus tag: CDES_14380
so part of: sequence
location: complement(1887..5222)
location: region:1887-5222:-1
so has part: feature:1887-5222:-1:exon
subclass of: SO_0000010

position:1887:-1
position: 1887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5222:-1
position: 5222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1887-5222:-1:exon

CDES_RS13760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13760
old locus tag: CDES_14380
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770521.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase domain-containing protein
translation: MHSQSVAYYESTVGDAPGPDGYYSEAGSAPAQAWVKSENAAGYARLLGVEQGQVLSGGEVASWFNKVTSPKGQKLGRALREDGVPGFDLTFCAPKSVSVLWGLSGRDQVRAIVDQAHSVAVSTALDYLNTHAAYTRRWDESETLIVDNTLGLSGVKYEHRTSRAGDPHVHSHVLLANRQLCADSKARSLDGVSLYHEARAAGMLYQAALREELTRHLGVTWGAVTNGQADIVGLDDRGLLEAFSTRTTEISQWEEKNSLPHNYQLQRVGQKTTRQVKDVDASVSELETKWAKHQDAVARVEQIIADADTTESPIAPQVLPTPEAVLAEVITERSTFTRADVVEKCAEMIPVGALTVDEIVEFAEVTATQALESVALSVTPERAREVDKTQREGSQRFTTDVVIEEVNRGIDLATTRTHNAVVAASIQPVQGVLSPAQAQAMTAVVSSDFLASVVVAPAGAGKTSSLKAARQVWEQAGRTVVGLAPTGKAADVMVGEQVAHESSTIARALYGTQDLSPADVAARLGWDRSTVVVVDEAGMVSTPDVVRLLEIVRAADARMVLVGDPQQYGAVKARSGMLATLAYELPDAVELTEVFRQRDAAERAASIQLRSGDKESIKRAAHWYMLNDRLCAGSVTAMLDDALAGWSADTAAGKDSLLVATTGEQVQALNAGAQKIRAERGELDLSEARELSTGQWLHAGDVLLSRKNDYDLTTSAGDVVRNGQRWRVDALHGDGSISVTRLDQTRARAVLPASYLRESGQLGYASTGHSAQGATVDVARVVAGAGQVDRASVYVPLTRGREGNYLYLTESMPGDSAEGHGSVVPVARREVGDYPRDVLIAAAVRDGVDLTPHQVWGKARSDWELTRLAAGRGIDGSPFTGTRMGEMMAAREALRDARWREEFESVTPLPVRVKPTPKSKASAPKDQEMMSREELDARFAAAQRALEEVEQRQRVVDGEHRELVRQLQQVNNEVRAVVRQVDQLGYQIAAAQRARENRGVFAKMFKPNAGVEELEQLSAQKVALEQQHTELVEHRERVVEEATVVEERREEVREECSRARTAVAFAFAEQLQPTTFDLNASSFSNSSGADLNADQQFGMNQSRGHDHGLDL
SIO_010081: CDES_RS13760
subclass of: SO_0000673
so part of: CDES_RS13760
location: complement(1887..5222)
location: region:1887-5222:-1
so has part: feature:1887-5222:-1:exon

WP_231686573.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1887-5222:-1:exon

CDES_RS13765
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13765
old locus tag: CDES_14395
so part of: sequence
location: 6016..9291
location: region:6016-9291:1
so has part: feature:6016-9291:1:exon
subclass of: SO_0000010

position:6016:1
position: 6016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9291:1
position: 9291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6016-9291:1:exon

CDES_RS13765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13765
old locus tag: CDES_14395
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013350346.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-6 DNA methylase
translation: METFDSLMAQFMASAKDSLNGPGEPEAALATPVSNLISGYCENILNRKVVLHSEVREDAGAVRPDFGVRVDGLISGHIELKKPGTSLDPSTYGKTSHNGKQWKRLRNLPNLLHTNGLEWRLWRYGELAEVVYIPASSLTKIKGKVEIPPKLETLLSSFLSWGPTPIKTIGQLVNTIAPLAALLREEVLASLQANRRAAKSQGPEENSYPFIGLKNDWRASLYPHATDEEFADGFAQTVVFALVIALSEGMDFTTIQLRDIAEGLEAKHSLLGRSLDLLTEHIKDSAVGLVLETIIRALSATDWAAISGGNQGVYLHLYEHFLTTYDPDLRKKSGSYYTPTDVVAAMTRLTDQALQKYLSIPGGLSDDSVAVIDPAMGTGTYPLSIVQHVAAKAEKYGPGAVADAVTSVAKRLYGIELQSGPFSVAELRLSQAILEFGGHLPDDGMHLYVADTLEDPQSGTNRQLSYTLQLIAQQRQRANRVKLETPIQVCIGNPPYKDKSEGLGGWVEKGSPNSKYAPLDDFRKDGNGRYEYVLKNLYVYFWRWAMWKVFESIPGSTDGVVCFITATGYLNGPGFKGMREWIRRNTSRGWIINLTPEGKQPPAKNAVFNIETPVAIGLFIRNKENDADAPSEVKYIELYGTRDEKFRALSNLDLDSNDFSDTGSGWTDGFTPKASDQWEQYPALNDLYPWTSAGVTPSKTWVYAPDTDVLEQRWDEIIQETNLDRKKELFKETRDTTLEKTKNPLPGPGTEQGTKSPFNTVEWPKKPAIVEVGYRSFDRQYIIADSRLIDMPRPNLWTARSPEQIFLVEQHAHYPKAGPGLMFSSLIPDKDSFKGSEGGRTLPILHPTGEPNIAPGLLSALSQHFGTDITVEALTAYIAGISAHPGYVSTFDEELHYSGNRVPLTADIALWDKAVEIGQFIIWLHTFGDHGHAPNNAQTLFDVESTLPLPTYDTAVGNGMPDDVAYDEKTQTIHLGKGTWSNVSPAVWSYTVGGNSTIKSWVGYRRKKPKGRKSSPLDDIITTSWPTQWSKQFYELLVTLTHLVQLEDQQQQLLNDVIASSQLTKDELSSLGVKWPTESKDRKPRLPGSLF
SIO_010081: CDES_RS13765
subclass of: SO_0000673
so part of: CDES_RS13765
location: 6016..9291
location: region:6016-9291:1
so has part: feature:6016-9291:1:exon

WP_053546274.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6016-9291:1:exon

CDES_RS13770
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13770
so part of: sequence
location: complement(9436..10905)
location: region:9436-10905:-1
so has part: feature:9436-10905:-1:exon
subclass of: SO_0000010

position:9436:-1
position: 9436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10905:-1
position: 10905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9436-10905:-1:exon

CDES_RS13770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13770
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011069214.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSLPSKGRSSTPAGVRVAQPLPTHRDTGGLDDTPAGITDRDSLIDHLGRKAIHGSRDRDFGKAYYRHEDGTLRPRLYRVDSEALTRCQYVMLTTQQYAAVLVVDIDQPGQSGGHPSDLSSEVRQKMAALIEHNLGPSWVGINPQNGKAQAIWLIDPVYADKSGKSRHMSLLAATSRALGELLDHDPNFSHRFSRSPFYDGNDPTAYRWYCQHKRVRRLADLLKEIRTMTGQEQYTKPRQQFSSGRELINAVKTRREEAQAFKALAQDVETELSTELDQYDPELIDGVRVLWISQGRAARDETAFRYALKTCHRLRAAGERMTDAAIIDAYEHAYNVAQRHGGDGRDSEMPPMRDRQTMARRVRGYVTQSKTDIGTSASPVRATSTERKALSTMGRRGGKKAAERWKDRESHYAQTELEKLADASKKRARKAKGTRLTIAGWVMNVESETGTWPTIAETMVEFSVSRETVKRALRSAGIELPRGRRKTSN
SIO_010081: CDES_RS13770
subclass of: SO_0000673
so part of: CDES_RS13770
location: complement(9436..10905)
location: region:9436-10905:-1
so has part: feature:9436-10905:-1:exon

WP_053546275.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9436-10905:-1:exon

CDES_RS13775
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13775
so part of: sequence
location: complement(11105..11368)
location: region:11105-11368:-1
so has part: feature:11105-11368:-1:exon
subclass of: SO_0000010

position:11105:-1
position: 11105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11368:-1
position: 11368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11105-11368:-1:exon

CDES_RS13775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13775
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPPARRGSRTTTGRKTTKPSAATPAPTDEEGTELTRRTTIYLKEETWKSMKLMTVETGESVSAYIERLIDKDVKRVQKKLLQKPKSL
SIO_010081: CDES_RS13775
subclass of: SO_0000673
so part of: CDES_RS13775
location: complement(11105..11368)
location: region:11105-11368:-1
so has part: feature:11105-11368:-1:exon

WP_053546276.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11105-11368:-1:exon

CDES_RS13780
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13780
so part of: sequence
location: complement(11688..11915)
location: region:11688-11915:-1
so has part: feature:11688-11915:-1:exon
subclass of: SO_0000010

position:11688:-1
position: 11688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11915:-1
position: 11915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11688-11915:-1:exon

CDES_RS13780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13780
inference: COORDINATES: protein motif:HMM:NF013561.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix domain-containing protein
translation: MADLSKKLAKAPVTSAPQKKVADTFTTAAEKPTRTTIYLPTSLAKRLKHAAIEEERSVSAILADLAEDWLNKEDD
SIO_010081: CDES_RS13780
subclass of: SO_0000673
so part of: CDES_RS13780
location: complement(11688..11915)
location: region:11688-11915:-1
so has part: feature:11688-11915:-1:exon

WP_053546277.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11688-11915:-1:exon

CDES_RS13785
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13785
old locus tag: CDES_14445
so part of: sequence
location: complement(11915..12514)
location: region:11915-12514:-1
so has part: feature:11915-12514:-1:exon
subclass of: SO_0000010

position:12514:-1
position: 12514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11915-12514:-1:exon

CDES_RS13785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13785
old locus tag: CDES_14445
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013128816.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MSILTIAHTKGGVGKTTSAVLLCAAAHARGLAVTLIDSDAQGTATAWAHAAEEAGDTFPWPIITAATPAHLARTLDGHNGLVIVDTPPGGYDVIETAIEAGDLILIPTSASPLDINRVWPTVEATSHKPAVVCLSQIDSRTTLPKIARTALENEGVVVAETEIPAREALRHMYATTPQRLYGYDELLTELLSSNLLGEH
SIO_010081: CDES_RS13785
subclass of: SO_0000673
so part of: CDES_RS13785
location: complement(11915..12514)
location: region:11915-12514:-1
so has part: feature:11915-12514:-1:exon

WP_053546278.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11915-12514:-1:exon

CDES_RS13790
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13790
so part of: sequence
location: 12788..13249
location: region:12788-13249:1
so has part: feature:12788-13249:1:exon
subclass of: SO_0000010

position:12788:1
position: 12788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13249:1
position: 13249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12788-13249:1:exon

CDES_RS13790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13790
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTENILEKLTEAFVEHQQAEREEWEARTRLYATIREAMQVGPRGTQVEITRITGLTRERIRTITRPYHRTITRFTDDGLALITLPESTGIHPDAEYEIRVKTEGNVEVLGIVQGQELIDAREEQLSRYLTEDPSRTNIRMVDVSHLVDVSDYI
SIO_010081: CDES_RS13790
subclass of: SO_0000673
so part of: CDES_RS13790
location: 12788..13249
location: region:12788-13249:1
so has part: feature:12788-13249:1:exon

WP_053546279.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12788-13249:1:exon

CDES_RS14435
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS14435
old locus tag: CDES_14455
pseudo: true
so part of: sequence
location: complement(<13479..13936)
location: region:13479-13936:-1
so has part: feature:13479-13936:-1:exon
subclass of: SO_0000010

position:13479:-1
position: 13479
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:13936:-1
position: 13936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13479-13936:-1:exon

CDES_RS14435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS14435
old locus tag: CDES_14455
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076612297.1
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ISL3 family transposase
SIO_010081: CDES_RS14435
subclass of: SO_0000673
so part of: CDES_RS14435
location: complement(<13479..13936)
location: region:13479-13936:-1
so has part: feature:13479-13936:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13479-13936:-1:exon

CDES_RS13800
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13800
so part of: sequence
location: 13982..15175
location: region:13982-15175:1
so has part: feature:13982-15175:1:exon
subclass of: SO_0000010

position:13982:1
position: 13982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15175:1
position: 15175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13982-15175:1:exon

CDES_RS13800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13800
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017488284.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alcohol dehydrogenase catalytic domain-containing protein
translation: MTTKNRAVVFHGIKDVRVDELDFPKLEMPDGSAAPHGVILKIVATNICGSDLHIYRGSFPVPEGMVLGHEMTGQVLEVGSDVQFLKEGDLVSVPFNVACGRCRNCRAGRTEVCETANPEQACAAYGFNLGDFQGGQAEYLFVPYADFQLLRFPDQEQAMEKILDLAVLSDILPTAFHGLMEAGAKPGSTVYIAGAGPVGRCAAAAARLLGASCIIVGDQDASRLELVRKHGCETIDLSATENLQDAVNDILGEPMVDCAVDCVGSEAHGLGSAADEMQPIAAVNQVLDITRPGGATGIIGIYGPDPIAETKAEQEGTFPVDFGKAWIKSPHIIGGQAPIMRYNRHLMMSILWDRMPYLTEMVNPRVISLDEAPQAYAEFDQGSVEKFVIDPHGMIAR
SIO_010081: CDES_RS13800
subclass of: SO_0000673
so part of: CDES_RS13800
location: 13982..15175
location: region:13982-15175:1
so has part: feature:13982-15175:1:exon

WP_053546281.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13982-15175:1:exon

CDES_RS14440
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS14440
pseudo: true
so part of: sequence
location: complement(15385..16108)
location: region:15385-16108:-1
so has part: feature:15385-16108:-1:exon
subclass of: SO_0000010

position:15385:-1
position: 15385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16108:-1
position: 16108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15385-16108:-1:exon

CDES_RS14440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS14440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006770492.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS6 family transposase
SIO_010081: CDES_RS14440
subclass of: SO_0000673
so part of: CDES_RS14440
location: complement(15385..16108)
location: region:15385-16108:-1
so has part: feature:15385-16108:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15385-16108:-1:exon

CDES_RS15425
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS15425
so part of: sequence
location: 16107..16241
location: region:16107-16241:1
so has part: feature:16107-16241:1:exon
subclass of: SO_0000010

position:16107:1
position: 16107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16241:1
position: 16241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16107-16241:1:exon

CDES_RS15425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS15425
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAVIISRLSSYCPNFATAPEIVSLPNLLEWFYITFRATRQAPEE
SIO_010081: CDES_RS15425
subclass of: SO_0000673
so part of: CDES_RS15425
location: 16107..16241
location: region:16107-16241:1
so has part: feature:16107-16241:1:exon

WP_269431764.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16107-16241:1:exon

CDES_RS13815
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13815
so part of: sequence
location: complement(16337..16966)
location: region:16337-16966:-1
so has part: feature:16337-16966:-1:exon
subclass of: SO_0000010

position:16337:-1
position: 16337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16966:-1
position: 16966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16337-16966:-1:exon

CDES_RS13815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13815
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015399804.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MBL fold metallo-hydrolase
translation: MTGLRIDHVETSGKFRLDGGEWDVDNNIWIVGDDSEVYVIDAAHDAAPIIEKVAGRRVKGIICTHGHNDHITVAPELSTMLDAPILLHPGDEMLWDETHHGVEHETMRDGQVFHIAGTDMQVLNTPGHSPGSVCLYLPEAGELFSGDTLFRGGPGATGRSYSSFATIIASLQKSVLDLPAETIVRTGHGDHTTVGAEAPHLEEWIKRGY
SIO_010081: CDES_RS13815
subclass of: SO_0000673
so part of: CDES_RS13815
location: complement(16337..16966)
location: region:16337-16966:-1
so has part: feature:16337-16966:-1:exon

WP_053543804.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16337-16966:-1:exon

CDES_RS13820
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13820
so part of: sequence
location: complement(16966..18072)
location: region:16966-18072:-1
so has part: feature:16966-18072:-1:exon
subclass of: SO_0000010

position:18072:-1
position: 18072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16966-18072:-1:exon

CDES_RS13820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13820
EC number: 1.1.1.306
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003855840.1
GO function: GO:0050607 - mycothiol-dependent formaldehyde dehydrogenase activity [Evidence IEA]
GO process: GO:0010127 - mycothiol-dependent detoxification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S-(hydroxymethyl)mycothiol dehydrogenase
translation: MSTTVTGIIARSKGAPVEQTEIVIPDPGPHDVIVKIQSTGVCHTDLAYRDGDISDEFPFLLGHESAGVVETVGDAVTHVEVGDFVVLNWRAVCGECRACRKGDLEYCFNTHNASKKMTLTDGTELTPALGIGSFAEKTLVHEGQCTKVNPDADPAAAGLLGCGIMAGLGSAVNTGEVKRGESVAVFGLGGVGMAAVAGAKIAGATTIIAVDIDAKKLEWAKEFGATHVIDSSQLSGEGENSEVAQKVREITDGFGTDVAIDAVGIMPTWQQAFYSRDHAGRMVMVGVPNLTSRIEVPAIDFYGRGGSLRPAWYGDCLPERDFPTYVDLYLQGRFPLDKFVSERIGLGDVEEAFTTMKAGDVLRSVVVL
SIO_010081: CDES_RS13820
subclass of: SO_0000673
so part of: CDES_RS13820
location: complement(16966..18072)
location: region:16966-18072:-1
so has part: feature:16966-18072:-1:exon

WP_053546284.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16966-18072:-1:exon

CDES_RS13825
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
gene: hxlA
locus tag: CDES_RS13825
so part of: sequence
location: complement(18144..18788)
location: region:18144-18788:-1
so has part: feature:18144-18788:-1:exon
subclass of: SO_0000010

position:18144:-1
position: 18144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18788:-1
position: 18788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18144-18788:-1:exon

CDES_RS13825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
gene: hxlA
locus tag: CDES_RS13825
EC number: 4.1.2.43
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011600601.1
GO function: GO:0043801 - hexulose-6-phosphate synthase activity [Evidence IEA]
GO process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3-hexulose-6-phosphate synthase
translation: MKIQFAIDAVTLKDAVRLAQATAEHVDILELGTPLIKSEGMRIIEVMREAHPDKKILADLKTMDAGELEAELAFSAGADYVTVLGVADDSTVRGAIAAADTHGKAIVVDLIGVDDKITRAREVVDLGAAFVEFHAGLDEQSQPGYSLDTLLTAGTRAGVPFAVAGGVSLDTIVAVYEAGADVAVVGSALYSAADPAQMARHMKEATAQSWPATS
SIO_010081: CDES_RS13825
subclass of: SO_0000673
so part of: CDES_RS13825
location: complement(18144..18788)
location: region:18144-18788:-1
so has part: feature:18144-18788:-1:exon

WP_053546285.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18144-18788:-1:exon

CDES_RS13830
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13830
so part of: sequence
location: complement(18879..19457)
location: region:18879-19457:-1
so has part: feature:18879-19457:-1:exon
subclass of: SO_0000010

position:18879:-1
position: 18879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19457:-1
position: 19457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18879-19457:-1:exon

CDES_RS13830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13830
inference: COORDINATES: protein motif:HMM:NF013539.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SIS domain-containing protein
translation: MLVQQQSPADSLVAITAEISHACAEVVSAAHLSLDAAASRIEASSRVFVSAAGRSGLALQMFAMRLTHLGHDAHVVGTATSPSIGVGDVLVTASGSGATGSVIAVAEKAKTAGAQVVAITAHPASPLAALADELVVIPAAIKTDRSHDQSVQYAGSLFEQLVVVLGDALFTALWHRSGQEEKDLWSRHSNLE
SIO_010081: CDES_RS13830
subclass of: SO_0000673
so part of: CDES_RS13830
location: complement(18879..19457)
location: region:18879-19457:-1
so has part: feature:18879-19457:-1:exon

WP_053543801.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18879-19457:-1:exon

CDES_RS13835
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13835
so part of: sequence
location: 19542..20348
location: region:19542-20348:1
so has part: feature:19542-20348:1:exon
subclass of: SO_0000010

position:19542:1
position: 19542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20348:1
position: 20348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19542-20348:1:exon

CDES_RS13835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13835
inference: COORDINATES: protein motif:HMM:NF012422.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MVSNSSPHDGAVPNSETPMILLQSVLAVLRSRNLSDQAARVEAERIASDGVLVLRNERPKLMDGIEPVALAFRELEDELANLVKHQVLMFDLVPPPESGRALPVSVAEAAREVVRLLVLISLEDHAISRVRIKWDCDGTNLLVEFRDDGAGGRDRSDDIYRHVSERIQHTGGHWDMESTAGWGSIFNIAFPLDEPHNTFDELDGLTDIQRDVLSLVTQGMTNVEIAAHLHLSANTIKYHVGNLMKKFGVTRRIELAVQSITRNKEPVV
SIO_010081: CDES_RS13835
subclass of: SO_0000673
so part of: CDES_RS13835
location: 19542..20348
location: region:19542-20348:1
so has part: feature:19542-20348:1:exon

WP_053546286.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19542-20348:1:exon

CDES_RS13840
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13840
pseudo: true
so part of: sequence
location: complement(<20612..20953)
location: region:20612-20953:-1
so has part: feature:20612-20953:-1:exon
subclass of: SO_0000010

position:20612:-1
position: 20612
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:20953:-1
position: 20953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20612-20953:-1:exon

CDES_RS13840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13840
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018297225.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: TrkH family potassium uptake protein
SIO_010081: CDES_RS13840
subclass of: SO_0000673
so part of: CDES_RS13840
location: complement(<20612..20953)
location: region:20612-20953:-1
so has part: feature:20612-20953:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20612-20953:-1:exon

CDES_RS13845
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13845
so part of: sequence
location: complement(21202..21483)
location: region:21202-21483:-1
so has part: feature:21202-21483:-1:exon
subclass of: SO_0000010

position:21202:-1
position: 21202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21483:-1
position: 21483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21202-21483:-1:exon

CDES_RS13845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13845
inference: COORDINATES: protein motif:HMM:NF025379.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Rv0909 family putative TA system antitoxin
translation: MKIMKIMGKAKDFLNSPSGKKTTGQALDKAEKFATGKLSADKATKIRKARGMVDKRLGTGSTDPTRPKRDTTERSTNRDDQPGSADGSGQHKP
SIO_010081: CDES_RS13845
subclass of: SO_0000673
so part of: CDES_RS13845
location: complement(21202..21483)
location: region:21202-21483:-1
so has part: feature:21202-21483:-1:exon

WP_053546288.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21202-21483:-1:exon

CDES_RS13850
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13850
so part of: sequence
location: complement(22003..22629)
location: region:22003-22629:-1
so has part: feature:22003-22629:-1:exon
subclass of: SO_0000010

position:22003:-1
position: 22003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22629:-1
position: 22629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22003-22629:-1:exon

CDES_RS13850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13850
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011896449.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MDIGYARVSTAKQDLDRQIDALRKEGIAAKYIYVDKKSGSTTNRPGLQQALEQARAGDVIVVHTLDRLGRTVRDTLNLIHDLQEREVGVRTLADPIKVDSSNPNDPMAQLAVVILSLFGQMERTYAVERAAHARAVAEAKGKRVGRPSVVDPDKLRYAEHLRNEGYSMSKIVEKTGITRSSLYRHLPPRPVETHTAADIPDTSHPTLG
SIO_010081: CDES_RS13850
subclass of: SO_0000673
so part of: CDES_RS13850
location: complement(22003..22629)
location: region:22003-22629:-1
so has part: feature:22003-22629:-1:exon

WP_053546289.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22003-22629:-1:exon

CDES_RS13855
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13855
so part of: sequence
location: 22980..23339
location: region:22980-23339:1
so has part: feature:22980-23339:1:exon
subclass of: SO_0000010

position:22980:1
position: 22980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23339:1
position: 23339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22980-23339:1:exon

CDES_RS13855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13855
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011013963.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metalloregulator ArsR/SmtB family transcription factor
translation: MLTIASRLDVMNRLGRAMADPTRSRILLALLGGPAYPAALAQDLELTRSNVSNHLACLRDCGIVVAEPQGRQTRYEIVDAHLAQALNALLDITLAVDDNAECIDAGCAVPGCVTGQESA
SIO_010081: CDES_RS13855
subclass of: SO_0000673
so part of: CDES_RS13855
location: 22980..23339
location: region:22980-23339:1
so has part: feature:22980-23339:1:exon

WP_053546290.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22980-23339:1:exon

CDES_RS13860
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13860
so part of: sequence
location: 23339..23935
location: region:23339-23935:1
so has part: feature:23339-23935:1:exon
subclass of: SO_0000010

position:23935:1
position: 23935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23339-23935:1:exon

CDES_RS13860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13860
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003859025.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cadmium resistance transporter
translation: MATGLLSAIGLFIATNIDDIIVLSLFFARGAGQKGTTLRILAGQYLGFMGILAAAVLVTLGAGAFLPAEAIPYFGLIPLALGLWVAWQAWRSDDDDDDDAKIAGKKVGVLTVAGVTFANGGDNIGVYVPVFLNVDTAAVIIYCIVFLVLVAGLVLLAKFVATRPPIAEVLERWEHVLFPIVLIGLGIFILVSGGAFGL
SIO_010081: CDES_RS13860
subclass of: SO_0000673
so part of: CDES_RS13860
location: 23339..23935
location: region:23339-23935:1
so has part: feature:23339-23935:1:exon

WP_053546291.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23339-23935:1:exon

CDES_RS13865
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13865
old locus tag: CDES_14545
so part of: sequence
location: 24130..25161
location: region:24130-25161:1
so has part: feature:24130-25161:1:exon
subclass of: SO_0000010

position:24130:1
position: 24130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25161:1
position: 25161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24130-25161:1:exon

CDES_RS13865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13865
old locus tag: CDES_14545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003854479.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTRYGTLLGLHGKPKDRVIIMRKGSKTTRVKFPHKDRPGFNLEEVKVDASTVLDDGGELWEKYQRTPKSATFVSFSGEPQGHLHVQRVYKNVIKASVYEGNGQWGRIDDFHPEQVLFDAGEAWPKSKTDQLLNDTAVVPAPEETPTPTPKTTGMGQRVGYVRVSSADQNLARQREAIGAVDREFVDELSARSRAQRPGLEECIAYLRHHDELIVASIDRLARSLVDLRSIIDQITAKGASVSFIKEGLVFSATDQDPRATLMLGILGSFAEFERSIIRERQAEGIALAKRAGKYSGRKKALSPAQIKQARDRIDAGESKTAVAQDLGVGRATLYRYLMADNKR
SIO_010081: CDES_RS13865
subclass of: SO_0000673
so part of: CDES_RS13865
location: 24130..25161
location: region:24130-25161:1
so has part: feature:24130-25161:1:exon

WP_053546292.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24130-25161:1:exon

CDES_RS13870
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13870
old locus tag: CDES_14560
so part of: sequence
location: 25739..26515
location: region:25739-26515:1
so has part: feature:25739-26515:1:exon
subclass of: SO_0000010

position:25739:1
position: 25739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26515:1
position: 26515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25739-26515:1:exon

CDES_RS13870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13870
old locus tag: CDES_14560
inference: COORDINATES: protein motif:HMM:NF015824.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YfbU family protein
translation: MATVTIRMDEETKEDLEILAQGRNQSLSDLIRTALDGLLGRDQKTGAFDMSPASLSVVDRQQLALLHRILARLVEGDLEDGDRDYQLERAKVLEEGFTREYSTEFAGIYPELSRQDSKFVVDVLELFRVISFSIDRLRDRGIELEKEVTSRLRFDGFDVQDGREVRLLEYASFLVDEDHWSELQETFSPANDRGNSHYRTAGVYQRMLEQLKEIELEKKNKAGGRYLLHDPELYFLTVEELNKLADSTTHPSHQNKEL
SIO_010081: CDES_RS13870
subclass of: SO_0000673
so part of: CDES_RS13870
location: 25739..26515
location: region:25739-26515:1
so has part: feature:25739-26515:1:exon

WP_053546293.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25739-26515:1:exon

CDES_RS13875
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13875
old locus tag: CDES_14565
so part of: sequence
location: 26515..27702
location: region:26515-27702:1
so has part: feature:26515-27702:1:exon
subclass of: SO_0000010

position:27702:1
position: 27702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26515-27702:1:exon

CDES_RS13875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13875
old locus tag: CDES_14565
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MWADLDSYLEVCAQKAKDELSYLKEEDLLNENEEVIVATLLASSLPRPVDVQWDAPTRSQIVETTIERADPFGRGIVNIPGSKMTVSYPASGSTGILNYRASTSSLSPQYGKINTHSVTVVISDRELTSEKINAELTQVKRSVSSRVEWANRDLEKFRGKLKQILLRDCSIRKERILKQRAVEAAIDIPIWRKDAAPPIIRTEPKLVALEKRRSQEAFVPEPILEEAIYQDVLRVISSWTKTFERNPGTFKKLHEEDLRDLLLANLNGYWQGAAGGELFNGEGKTDVLIRYGDRNAFIAECKIWSGKAVVEQAIDQLLSYMVWRDTKAALIMFIKTRKPEETITRLHSAVRQHSKYCMNSGSLHDSTWGEYIFVADEENRKISLAVIPVVIAERQ
SIO_010081: CDES_RS13875
subclass of: SO_0000673
so part of: CDES_RS13875
location: 26515..27702
location: region:26515-27702:1
so has part: feature:26515-27702:1:exon

WP_053546294.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26515-27702:1:exon

CDES_RS14780
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS14780
so part of: sequence
location: 27792..27944
location: region:27792-27944:1
so has part: feature:27792-27944:1:exon
subclass of: SO_0000010

position:27792:1
position: 27792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27944:1
position: 27944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27792-27944:1:exon

CDES_RS14780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS14780
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQRYTADHLPDCPPIPQQCIDDDANQLHLTEMQLGPGYFATVFPHQQHLL
SIO_010081: CDES_RS14780
subclass of: SO_0000673
so part of: CDES_RS14780
location: 27792..27944
location: region:27792-27944:1
so has part: feature:27792-27944:1:exon

WP_156323098.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27792-27944:1:exon

CDES_RS13880
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13880
so part of: sequence
location: complement(28080..28313)
location: region:28080-28313:-1
so has part: feature:28080-28313:-1:exon
subclass of: SO_0000010

position:28080:-1
position: 28080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28313:-1
position: 28313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28080-28313:-1:exon

CDES_RS13880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13880
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTRDNFSLLNEEQRRKLRNITASARIAGTPISDMARTKIIDTMVGKTTIEDAICEISDYYTNKHNDDGDEDEKTRPR
SIO_010081: CDES_RS13880
subclass of: SO_0000673
so part of: CDES_RS13880
location: complement(28080..28313)
location: region:28080-28313:-1
so has part: feature:28080-28313:-1:exon

WP_053546295.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28080-28313:-1:exon

CDES_RS13885
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13885
old locus tag: CDES_14580
so part of: sequence
location: complement(28310..28612)
location: region:28310-28612:-1
so has part: feature:28310-28612:-1:exon
subclass of: SO_0000010

position:28310:-1
position: 28310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28612:-1
position: 28612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28310-28612:-1:exon

CDES_RS13885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13885
old locus tag: CDES_14580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018297243.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix protein, CopG family
translation: MATDKQRSYVGRGPVVSVRLEPELVERLDALSERTRRSRGTYLRMAIWAMLPELEKMHWEQAAADFESLAIKDAFEEITQHLMDEAINRANKDNNEKRHP
SIO_010081: CDES_RS13885
subclass of: SO_0000673
so part of: CDES_RS13885
location: complement(28310..28612)
location: region:28310-28612:-1
so has part: feature:28310-28612:-1:exon

WP_053546296.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28310-28612:-1:exon

CDES_RS13890
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13890
old locus tag: CDES_14590
so part of: sequence
location: 29181..29462
location: region:29181-29462:1
so has part: feature:29181-29462:1:exon
subclass of: SO_0000010

position:29181:1
position: 29181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29462:1
position: 29462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29181-29462:1:exon

CDES_RS13890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13890
old locus tag: CDES_14590
inference: COORDINATES: protein motif:HMM:NF023742.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MTSTLALEEPLTVFRGARFRLDPTGEQQGILSQQAGAARVAYNMMCTLNKDILEARSQLYSTLIKDGKTKDKAKKELKDAAEKDPSLGLTPVW
SIO_010081: CDES_RS13890
subclass of: SO_0000673
so part of: CDES_RS13890
location: 29181..29462
location: region:29181-29462:1
so has part: feature:29181-29462:1:exon

WP_053546297.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29181-29462:1:exon

CDES_RS13900
type: Gene
subclass of: SO_0000704
RO_0002162: 931089
locus tag: CDES_RS13900
so part of: sequence
location: 29507..30699
location: region:29507-30699:1
so has part: feature:29507-30699:1:exon
subclass of: SO_0000010

position:29507:1
position: 29507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30699:1
position: 30699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29507-30699:1:exon

CDES_RS13900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 931089
locus tag: CDES_RS13900
inference: COORDINATES: similar to AA sequence:RefSeq:WP_086558201.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MPRKTYSEEFKRDAVALYENSTGTSIQTIATDLGINRNTLQNWLKKYGTGARTKITAIESASVTEAERIRQLEREVIRLREERDILRKAAKYFGGRDELVIRFQFVDDAQKTYSVKRICDVLKLNRSSYYKWKRTAFTRKKRLLNDVILGARVKTVFTTHSGCYGAKRIAAELKDQIGYDPVNHKRVARVMRELKLFGYTKKRKVTTTVSDKTKTVFPDLVGRKFTAEKPNQLYVGDITYLPIADGSNMYLATVIDCYSRRLVGFSIADHMRTSLVQDALKMAKGQRGNLKGSIFHSDHGSVYTSHAFQNTCNDLGIRQSMGTIGTSADNALAESFNAAMKREVFQDSKTFANQLICRRDVFRWCTRYNTIRRHSWCKYLAPVVFEERGPAILRSAS
SIO_010081: CDES_RS13900
subclass of: SO_0000673
so part of: CDES_RS13900
location: join(29507..29786,29786..30699)
location: region:29507-30699:1
so has part: feature:29507-29786:1:exon
so has part: feature:29786-30699:1:exon

WP_156322826.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29507-29786:1:exon

position:29786:1
position: 29786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:29786-30699:1:exon