Corynebacterium deserti GIMN1.010 plasmid pCdes2, complete sequence.
Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.
Complete genome sequence of Corynebacterium deserti GIMN1.010 (=DSM 45689), isolated from desert sand in western China
Submitted (11-AUG-2014) CeBiTec, Bielefeld University, Universitaetsstr. 27, Bielefeld, NRW 33615, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP009222.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.8\nGenome Coverage :: 89.9x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/23/2022 01:56:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,854\nCDSs (total) :: 2,774\nGenes (coding) :: 2,716\nCDSs (with protein) :: 2,716\nGenes (RNA) :: 80\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 3\nPseudo Genes (total) :: 58\nCDSs (without protein) :: 58\nPseudo Genes (ambiguous residues) :: 0 of 58\nPseudo Genes (frameshifted) :: 29 of 58\nPseudo Genes (incomplete) :: 39 of 58\nPseudo Genes (internal stop) :: 18 of 58\nPseudo Genes (multiple problems) :: 23 of 58\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006770521.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013350346.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011069214.1
COORDINATES: protein motif:HMM:NF013561.2
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013128816.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612297.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017488284.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006770492.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015399804.1
COORDINATES: similar to AA sequence:RefSeq:WP_003855840.1
GO:0050607 - mycothiol-dependent formaldehyde dehydrogenase activity [Evidence IEA]
GO:0010127 - mycothiol-dependent detoxification [Evidence IEA]
S-(hydroxymethyl)mycothiol dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011600601.1
GO:0043801 - hexulose-6-phosphate synthase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013539.2
COORDINATES: protein motif:HMM:NF012422.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018297225.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025379.2
Rv0909 family putative TA system antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011896449.1
COORDINATES: similar to AA sequence:RefSeq:WP_011013963.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_003859025.1
COORDINATES: similar to AA sequence:RefSeq:WP_003854479.1
COORDINATES: protein motif:HMM:NF015824.2
COORDINATES: similar to AA sequence:RefSeq:WP_018297243.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF023742.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_086558201.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.