Sarcophilus harrisii chromosome Y, mSarHar1.11, whole genome shotgun sequence.
type: Entry
definition: Sarcophilus harrisii chromosome Y, mSarHar1.11, whole genome shotgun sequence.
sequence version: NC_045433.1
sequence date: 2019-12-31
sequence: sequence
division: CON
label: NC_045433.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA596784
dblink: SAMEA6099886
keyword: WGS
keyword: RefSeq
source: Sarcophilus harrisii (Tasmanian devil)
organism: Sarcophilus harrisii
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nLR735561.1.\nAssembly name: mSarHar1.11\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the SC on 2019/11/07. The\noriginal whole-genome shotgun project has the accession\nCACPPN000000000.1.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Sarcophilus harrisii Annotation\n Release 103\nAnnotation Version :: 103\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.3\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 130564
topology: linear
so has quality: SO_0000987
location: 1..130564
location: region:1-130564:1
RO_0002162: 9305

NC_045433
type: RefSeq
SIO_000068: refseq

PRJNA596784
type: BioProject
SIO_000068: bioproject

SAMEA6099886
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:130564:1
position: 130564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-130564:1:source
so part of: sequence
organism: Sarcophilus harrisii
mol type: genomic DNA
chromosome: Y
cell line: 91H

9305
type: Taxonomy
SIO_000068: taxonomy

LOC116420407
type: Gene
subclass of: SO_0000704
RO_0002162: 9305
gene: LOC116420407
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(12177..29937)
location: region:12177-29937:-1
so has part: feature:12177-29937:-1:exon
subclass of: SO_0000010

116420407
type: Gene
SIO_000068: ncbigene

position:12177:-1
position: 12177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29937:-1
position: 29937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12177-29937:-1:exon

LOC116420407
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9305
gene: LOC116420407
product: XK-related protein 2-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031945288.1
SIO_010081: LOC116420407
subclass of: SO_0000673
so part of: LOC116420407
location: complement(join(12177..12886,21284..21584,23724..23727,23936..29937))
location: region:12177-29937:-1
so has part: feature:23936-29937:-1:exon
so has part: feature:23724-23727:-1:exon
so has part: feature:21284-21584:-1:exon
so has part: feature:12177-12886:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23936-29937:-1:exon

position:23936:-1
position: 23936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:23724-23727:-1:exon

position:23724:-1
position: 23724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23727:-1
position: 23727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:21284-21584:-1:exon

position:21284:-1
position: 21284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21584:-1
position: 21584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:12177-12886:-1:exon

position:12886:-1
position: 12886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116420407
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9305
gene: LOC116420407
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: XK-related protein 2-like
translation: MDTANEEGVDHVPSLEEGMIHGPSFQFTFPYSILFSTFLYCAEVASAIYMIDLYRKNDDNFWMGFTSIFCFGGCIMDQLTLIIVHKDLSKNKPLVFFVHFLLMGPVDRQIPMMVCSNRCLKAIAIYFQLLKKQKCEKEETYVSTTRRKILQNGNEGTLEWEITHLVRTLCTHYNAFKRMALIQAFLGSVPQLTYQLYVTFTVRELPLGRAVLMTFALISTIYGAILCNVLAIQIKYEDYKINLQPLEFICITIWRCLEITSRLVILVLFSASLKLRAVPFMLGVLMIPLLEPWVEFWRSGAKFPNNTEKNISRVHTLAILMLVTILYAGINFFCWSAVKLRLADKEFIDKSQNWGHMALHYSIRLIENVIMVVVFSLQGGKTILYCCDSLIALQLVITYLLSIGFMLLFHQYLHPRWSDKAIPEYAETQPEEL
SIO_010081: LOC116420407
subclass of: SO_0000673
so part of: LOC116420407
location: complement(join(12213..12886,21284..21584,23724..23727,23936..24258))
location: region:12213-24258:-1
so has part: feature:23936-24258:-1:exon
so has part: feature:23724-23727:-1:exon
so has part: feature:21284-21584:-1:exon
so has part: feature:12213-12886:-1:exon

XP_031801148.1
type: Protein
SIO_000068: ncbiprotein

position:12213:-1
position: 12213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24258:-1
position: 24258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23936-24258:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:23724-23727:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:21284-21584:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:12213-12886:-1:exon

LOC116420405
type: Gene
subclass of: SO_0000704
RO_0002162: 9305
gene: LOC116420405
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(32091..45793)
location: region:32091-45793:-1
so has part: feature:32091-45793:-1:exon
subclass of: SO_0000010

116420405
type: Gene
SIO_000068: ncbigene

position:32091:-1
position: 32091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45793:-1
position: 45793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32091-45793:-1:exon

LOC116420405
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9305
gene: LOC116420405
product: lysine-specific demethylase 5C-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_031945284.1
SIO_010081: LOC116420405
subclass of: SO_0000673
so part of: LOC116420405
location: complement(join(32091..32540,32633..32832,32946..33015,33128..33727,34199..34336,34466..34645,36171..36309,36602..36960,37852..37948,38319..38466,38567..38691,38773..38954,39253..39447,39562..39681,40939..41101,41202..41383,41731..41889,42098..42217,42529..42687,43421..43617,43727..43850,44225..44356,44784..44954,45268..45793))
location: region:32091-45793:-1
so has part: feature:45268-45793:-1:exon
so has part: feature:44784-44954:-1:exon
so has part: feature:44225-44356:-1:exon
so has part: feature:43727-43850:-1:exon
so has part: feature:43421-43617:-1:exon
so has part: feature:42529-42687:-1:exon
so has part: feature:42098-42217:-1:exon
so has part: feature:41731-41889:-1:exon
so has part: feature:41202-41383:-1:exon
so has part: feature:40939-41101:-1:exon
so has part: feature:39562-39681:-1:exon
so has part: feature:39253-39447:-1:exon
so has part: feature:38773-38954:-1:exon
so has part: feature:38567-38691:-1:exon
so has part: feature:38319-38466:-1:exon
so has part: feature:37852-37948:-1:exon
so has part: feature:36602-36960:-1:exon
so has part: feature:36171-36309:-1:exon
so has part: feature:34466-34645:-1:exon
so has part: feature:34199-34336:-1:exon
so has part: feature:33128-33727:-1:exon
so has part: feature:32946-33015:-1:exon
so has part: feature:32633-32832:-1:exon
so has part: feature:32091-32540:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:45268-45793:-1:exon

position:45268:-1
position: 45268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:44784-44954:-1:exon

position:44784:-1
position: 44784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44954:-1
position: 44954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:44225-44356:-1:exon

position:44225:-1
position: 44225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44356:-1
position: 44356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:43727-43850:-1:exon

position:43727:-1
position: 43727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43850:-1
position: 43850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:43421-43617:-1:exon

position:43421:-1
position: 43421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43617:-1
position: 43617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:42529-42687:-1:exon

position:42529:-1
position: 42529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42687:-1
position: 42687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:42098-42217:-1:exon

position:42098:-1
position: 42098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42217:-1
position: 42217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:41731-41889:-1:exon

position:41731:-1
position: 41731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41889:-1
position: 41889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:41202-41383:-1:exon

position:41202:-1
position: 41202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41383:-1
position: 41383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:40939-41101:-1:exon

position:40939:-1
position: 40939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41101:-1
position: 41101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:39562-39681:-1:exon

position:39562:-1
position: 39562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39681:-1
position: 39681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:39253-39447:-1:exon

position:39253:-1
position: 39253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39447:-1
position: 39447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:38773-38954:-1:exon

position:38773:-1
position: 38773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:38954:-1
position: 38954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:38567-38691:-1:exon

position:38567:-1
position: 38567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:38691:-1
position: 38691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:38319-38466:-1:exon

position:38319:-1
position: 38319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:38466:-1
position: 38466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:37852-37948:-1:exon

position:37852:-1
position: 37852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:37948:-1
position: 37948
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:36602-36960:-1:exon

position:36602:-1
position: 36602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36960:-1
position: 36960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:36171-36309:-1:exon

position:36171:-1
position: 36171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36309:-1
position: 36309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:34466-34645:-1:exon

position:34466:-1
position: 34466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34645:-1
position: 34645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:34199-34336:-1:exon

position:34199:-1
position: 34199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34336:-1
position: 34336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:33128-33727:-1:exon

position:33128:-1
position: 33128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33727:-1
position: 33727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:32946-33015:-1:exon

position:32946:-1
position: 32946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33015:-1
position: 33015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:32633-32832:-1:exon

position:32633:-1
position: 32633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32832:-1
position: 32832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:32091-32540:-1:exon

position:32540:-1
position: 32540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116420405
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9305
gene: LOC116420405
product: lysine-specific demethylase 5C-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_031945283.1
SIO_010081: LOC116420405
subclass of: SO_0000673
so part of: LOC116420405
location: complement(join(32091..32540,32633..32832,32946..33015,33128..33727,34199..34336,34466..34645,36171..36309,36602..36960,37852..37948,38319..38466,38567..38691,38773..38954,39253..39447,39562..39681,40166..40210,40939..41101,41202..41383,41731..41889,42098..42217,42529..42687,43421..43617,43727..43850,44225..44356,44784..44954,45268..45793))
location: region:32091-45793:-1
so has part: feature:45268-45793:-1:exon
so has part: feature:44784-44954:-1:exon
so has part: feature:44225-44356:-1:exon
so has part: feature:43727-43850:-1:exon
so has part: feature:43421-43617:-1:exon
so has part: feature:42529-42687:-1:exon
so has part: feature:42098-42217:-1:exon
so has part: feature:41731-41889:-1:exon
so has part: feature:41202-41383:-1:exon
so has part: feature:40939-41101:-1:exon
so has part: feature:40166-40210:-1:exon
so has part: feature:39562-39681:-1:exon
so has part: feature:39253-39447:-1:exon
so has part: feature:38773-38954:-1:exon
so has part: feature:38567-38691:-1:exon
so has part: feature:38319-38466:-1:exon
so has part: feature:37852-37948:-1:exon
so has part: feature:36602-36960:-1:exon
so has part: feature:36171-36309:-1:exon
so has part: feature:34466-34645:-1:exon
so has part: feature:34199-34336:-1:exon
so has part: feature:33128-33727:-1:exon
so has part: feature:32946-33015:-1:exon
so has part: feature:32633-32832:-1:exon
so has part: feature:32091-32540:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:45268-45793:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:44784-44954:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:44225-44356:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:43727-43850:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:43421-43617:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:42529-42687:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:42098-42217:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:41731-41889:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:41202-41383:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:40939-41101:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:40166-40210:-1:exon

position:40166:-1
position: 40166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40210:-1
position: 40210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:39562-39681:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:39253-39447:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:38773-38954:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:38567-38691:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:38319-38466:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:37852-37948:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:36602-36960:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:36171-36309:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:34466-34645:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:34199-34336:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:33128-33727:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:32946-33015:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:32633-32832:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:32091-32540:-1:exon

LOC116420405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9305
gene: LOC116420405
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lysine-specific demethylase 5C-like isoform X2
translation: MEEGGYEAISKDRRWARVAQRLSYPAGKNIGSLLRSHYERIIYPYEMYQSGANLVQCNTRPFDSEKDKEYKPHSIPLRQSVQPSKFNSYGRRAKRLQPDPEPTEEDIEKNPELKKLQIYGAGPKMMGLGLMAKEKSLRKKVLTSQDKDGPECPPTVVVKDETGIDLKLETSFPKIFLDGKEELFHSLEPCTKMTMRLRRNHNNTQFVDSYVCRICARGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMAECKRPPEAFGFEQAKREYTLQSFGEMADTFKSDYFNMPVHMVPTELVEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPINDSMKHLSHEEEEYAASGWNLNIMPVLEQSVLCHINADISGMKIPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSFAAEHLEDVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAASPEKLDLNLAAAVHKEMFIIVQEERRLRKALLEKGITEAEREAFELLPDDERQCTKCKTTCFLSALACYDCPDGLVCLSHIDDLCKCPRSKQYLRYRYTLDELPAMLHKLKIRAESFDTWAGKVRMALELEDGRKRSLEELRALESEARERHFPHSELLQRLKNCLSQAEKCISQALGLVSIQEHRVDPPQLTLEELQAFIDQMSSLPCAMHQIGDVKSVLEQAEAFQVEAQKALATLPASLSLLPSLLEKAQQLGIEVPEAKQLKQQMQQCYWLDEVRRTLVPPAQRGTLAVMRKLLALGANVAPSPAVNKARAELQELLTIAESWEEKAHLCLEARQKHPPAMLEAIIHEAESIPVHLPNILALKDALAKARAWIADVDEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELKQLELQVLTAHSWREKASKTFLKKNSCYTLLEVLCPCADAGSDIMKRNRWKKKELGLYKSDTELLGLSAQDLRDPGSVILAFKEGELKEKEGILHLRHANMAKSCPSSLISNDATPSSCLCGLAPVGEGTIQCDLCQDWFHGKCVSAPRPNSPRLLNPMSPVTVAWWEWDTKFLCPLCMRSRRPRLETILALLVALQKLPVRLPEGEALQCLTERAIGWQGRARQALASHDVAVMLARLSELRQWLQQPTGPPPETTSAQFFTTAPAPIRETINNESKPKLSLENGDGTTKLKKTGPVGFSDLDMLLSLLPQLSGPVLELPEAARVPLEELMIEGDLLEVTLDENHSIWQLLQAGRPPDLTRLRTLFELEKAEQSGTRIRGRAVEKRHRSKAEKSGEFKDVSREQREPKRTRPRVEMSEETRKDPEEDIGMGLNRDIATSAAILTKNSSPNSVEVRSGT
SIO_010081: LOC116420405
subclass of: SO_0000673
so part of: LOC116420405
location: complement(join(32265..32540,32633..32832,32946..33015,33128..33727,34199..34336,34466..34645,36171..36309,36602..36960,37852..37948,38319..38466,38567..38691,38773..38954,39253..39447,39562..39681,40939..41101,41202..41383,41731..41889,42098..42217,42529..42687,43421..43617,43727..43850,44225..44356,44784..44948))
location: region:32265-44948:-1
so has part: feature:44784-44948:-1:exon
so has part: feature:44225-44356:-1:exon
so has part: feature:43727-43850:-1:exon
so has part: feature:43421-43617:-1:exon
so has part: feature:42529-42687:-1:exon
so has part: feature:42098-42217:-1:exon
so has part: feature:41731-41889:-1:exon
so has part: feature:41202-41383:-1:exon
so has part: feature:40939-41101:-1:exon
so has part: feature:39562-39681:-1:exon
so has part: feature:39253-39447:-1:exon
so has part: feature:38773-38954:-1:exon
so has part: feature:38567-38691:-1:exon
so has part: feature:38319-38466:-1:exon
so has part: feature:37852-37948:-1:exon
so has part: feature:36602-36960:-1:exon
so has part: feature:36171-36309:-1:exon
so has part: feature:34466-34645:-1:exon
so has part: feature:34199-34336:-1:exon
so has part: feature:33128-33727:-1:exon
so has part: feature:32946-33015:-1:exon
so has part: feature:32633-32832:-1:exon
so has part: feature:32265-32540:-1:exon

XP_031801144.1
type: Protein
SIO_000068: ncbiprotein

position:32265:-1
position: 32265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44948:-1
position: 44948
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44784-44948:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:44225-44356:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:43727-43850:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:43421-43617:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:42529-42687:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:42098-42217:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:41731-41889:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:41202-41383:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:40939-41101:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:39562-39681:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:39253-39447:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:38773-38954:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:38567-38691:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:38319-38466:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:37852-37948:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:36602-36960:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:36171-36309:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:34466-34645:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:34199-34336:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:33128-33727:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:32946-33015:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:32633-32832:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:32265-32540:-1:exon

LOC116420405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9305
gene: LOC116420405
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lysine-specific demethylase 5C-like isoform X1
translation: MEEGGYEAISKDRRWARVAQRLSYPAGKNIGSLLRSHYERIIYPYEMYQSGANLVQCNTRPFDSEKDKEYKPHSIPLRQSVQPSKFNSYGRRAKRLQPDPEPTEEDIEKNPELKKLQIYGAGPKMMGLGLMAKEKSLRKKVLTSQDKDGPECPPTVVVKDETGIDLKLETSFPKIFLDGKEELFHSLEPCTKMTMRLRRNHNNTQFVDSYVCRICARGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMAECKRPPEAFGFEQAKREYTLQSFGEMADTFKSDYFNMPVHMVPTELVEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPINDSMKHLSHEEEEYAASGWNLNIMPVLEQSVLCHINADISGMKIPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSFAAEHLEDVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPGVNAVSSLHCFFCTLVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAASPEKLDLNLAAAVHKEMFIIVQEERRLRKALLEKGITEAEREAFELLPDDERQCTKCKTTCFLSALACYDCPDGLVCLSHIDDLCKCPRSKQYLRYRYTLDELPAMLHKLKIRAESFDTWAGKVRMALELEDGRKRSLEELRALESEARERHFPHSELLQRLKNCLSQAEKCISQALGLVSIQEHRVDPPQLTLEELQAFIDQMSSLPCAMHQIGDVKSVLEQAEAFQVEAQKALATLPASLSLLPSLLEKAQQLGIEVPEAKQLKQQMQQCYWLDEVRRTLVPPAQRGTLAVMRKLLALGANVAPSPAVNKARAELQELLTIAESWEEKAHLCLEARQKHPPAMLEAIIHEAESIPVHLPNILALKDALAKARAWIADVDEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELKQLELQVLTAHSWREKASKTFLKKNSCYTLLEVLCPCADAGSDIMKRNRWKKKELGLYKSDTELLGLSAQDLRDPGSVILAFKEGELKEKEGILHLRHANMAKSCPSSLISNDATPSSCLCGLAPVGEGTIQCDLCQDWFHGKCVSAPRPNSPRLLNPMSPVTVAWWEWDTKFLCPLCMRSRRPRLETILALLVALQKLPVRLPEGEALQCLTERAIGWQGRARQALASHDVAVMLARLSELRQWLQQPTGPPPETTSAQFFTTAPAPIRETINNESKPKLSLENGDGTTKLKKTGPVGFSDLDMLLSLLPQLSGPVLELPEAARVPLEELMIEGDLLEVTLDENHSIWQLLQAGRPPDLTRLRTLFELEKAEQSGTRIRGRAVEKRHRSKAEKSGEFKDVSREQREPKRTRPRVEMSEETRKDPEEDIGMGLNRDIATSAAILTKNSSPNSVEVRSGT
SIO_010081: LOC116420405
subclass of: SO_0000673
so part of: LOC116420405
location: complement(join(32265..32540,32633..32832,32946..33015,33128..33727,34199..34336,34466..34645,36171..36309,36602..36960,37852..37948,38319..38466,38567..38691,38773..38954,39253..39447,39562..39681,40166..40210,40939..41101,41202..41383,41731..41889,42098..42217,42529..42687,43421..43617,43727..43850,44225..44356,44784..44948))
location: region:32265-44948:-1
so has part: feature:44784-44948:-1:exon
so has part: feature:44225-44356:-1:exon
so has part: feature:43727-43850:-1:exon
so has part: feature:43421-43617:-1:exon
so has part: feature:42529-42687:-1:exon
so has part: feature:42098-42217:-1:exon
so has part: feature:41731-41889:-1:exon
so has part: feature:41202-41383:-1:exon
so has part: feature:40939-41101:-1:exon
so has part: feature:40166-40210:-1:exon
so has part: feature:39562-39681:-1:exon
so has part: feature:39253-39447:-1:exon
so has part: feature:38773-38954:-1:exon
so has part: feature:38567-38691:-1:exon
so has part: feature:38319-38466:-1:exon
so has part: feature:37852-37948:-1:exon
so has part: feature:36602-36960:-1:exon
so has part: feature:36171-36309:-1:exon
so has part: feature:34466-34645:-1:exon
so has part: feature:34199-34336:-1:exon
so has part: feature:33128-33727:-1:exon
so has part: feature:32946-33015:-1:exon
so has part: feature:32633-32832:-1:exon
so has part: feature:32265-32540:-1:exon

XP_031801143.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44784-44948:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:44225-44356:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:43727-43850:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:43421-43617:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:42529-42687:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:42098-42217:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:41731-41889:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:41202-41383:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:40939-41101:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:40166-40210:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:39562-39681:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:39253-39447:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:38773-38954:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:38567-38691:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:38319-38466:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:37852-37948:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:36602-36960:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:36171-36309:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:34466-34645:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:34199-34336:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:33128-33727:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:32946-33015:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:32633-32832:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:32265-32540:-1:exon

LOC116420406
type: Gene
subclass of: SO_0000704
RO_0002162: 9305
gene: LOC116420406
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 46227..67944
location: region:46227-67944:1
so has part: feature:46227-67944:1:exon
subclass of: SO_0000010

116420406
type: Gene
SIO_000068: ncbigene

position:46227:1
position: 46227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67944:1
position: 67944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46227-67944:1:exon

LOC116420406
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9305
gene: LOC116420406
product: E3 ubiquitin-protein ligase HUWE1-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_031945287.1
SIO_010081: LOC116420406
subclass of: SO_0000673
so part of: LOC116420406
location: join(46227..46444,46591..46813,47467..47695,48916..49094,49475..49564,49728..49879,50643..50688,51116..51382,51669..51921,52120..52253,54276..54490,54887..55175,55322..55412,57723..58269,58602..59124,59725..59843,59982..60138,60515..60647,60885..61087,61208..61290,62576..62672,63075..63221,63305..63550,63943..64060,64351..64491,64961..65248,65349..65454,65831..65948,66712..66893,67350..67540,67680..67944)
location: region:46227-67944:1
so has part: feature:46227-46444:1:exon
so has part: feature:46591-46813:1:exon
so has part: feature:47467-47695:1:exon
so has part: feature:48916-49094:1:exon
so has part: feature:49475-49564:1:exon
so has part: feature:49728-49879:1:exon
so has part: feature:50643-50688:1:exon
so has part: feature:51116-51382:1:exon
so has part: feature:51669-51921:1:exon
so has part: feature:52120-52253:1:exon
so has part: feature:54276-54490:1:exon
so has part: feature:54887-55175:1:exon
so has part: feature:55322-55412:1:exon
so has part: feature:57723-58269:1:exon
so has part: feature:58602-59124:1:exon
so has part: feature:59725-59843:1:exon
so has part: feature:59982-60138:1:exon
so has part: feature:60515-60647:1:exon
so has part: feature:60885-61087:1:exon
so has part: feature:61208-61290:1:exon
so has part: feature:62576-62672:1:exon
so has part: feature:63075-63221:1:exon
so has part: feature:63305-63550:1:exon
so has part: feature:63943-64060:1:exon
so has part: feature:64351-64491:1:exon
so has part: feature:64961-65248:1:exon
so has part: feature:65349-65454:1:exon
so has part: feature:65831-65948:1:exon
so has part: feature:66712-66893:1:exon
so has part: feature:67350-67540:1:exon
so has part: feature:67680-67944:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:46227-46444:1:exon

position:46444:1
position: 46444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:46591-46813:1:exon

position:46591:1
position: 46591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46813:1
position: 46813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:47467-47695:1:exon

position:47467:1
position: 47467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47695:1
position: 47695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:48916-49094:1:exon

position:48916:1
position: 48916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49094:1
position: 49094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:49475-49564:1:exon

position:49475:1
position: 49475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49564:1
position: 49564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:49728-49879:1:exon

position:49728:1
position: 49728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49879:1
position: 49879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:50643-50688:1:exon

position:50643:1
position: 50643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50688:1
position: 50688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:51116-51382:1:exon

position:51116:1
position: 51116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51382:1
position: 51382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:51669-51921:1:exon

position:51669:1
position: 51669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51921:1
position: 51921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:52120-52253:1:exon

position:52120:1
position: 52120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52253:1
position: 52253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:54276-54490:1:exon

position:54276:1
position: 54276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54490:1
position: 54490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:54887-55175:1:exon

position:54887:1
position: 54887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55175:1
position: 55175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:55322-55412:1:exon

position:55322:1
position: 55322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55412:1
position: 55412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:57723-58269:1:exon

position:57723:1
position: 57723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58269:1
position: 58269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:58602-59124:1:exon

position:58602:1
position: 58602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59124:1
position: 59124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:59725-59843:1:exon

position:59725:1
position: 59725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59843:1
position: 59843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:59982-60138:1:exon

position:59982:1
position: 59982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60138:1
position: 60138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:60515-60647:1:exon

position:60515:1
position: 60515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60647:1
position: 60647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:60885-61087:1:exon

position:60885:1
position: 60885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61087:1
position: 61087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:61208-61290:1:exon

position:61208:1
position: 61208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61290:1
position: 61290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:62576-62672:1:exon

position:62576:1
position: 62576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:62672:1
position: 62672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:63075-63221:1:exon

position:63075:1
position: 63075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63221:1
position: 63221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:63305-63550:1:exon

position:63305:1
position: 63305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63550:1
position: 63550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:63943-64060:1:exon

position:63943:1
position: 63943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64060:1
position: 64060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:64351-64491:1:exon

position:64351:1
position: 64351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64491:1
position: 64491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:64961-65248:1:exon

position:64961:1
position: 64961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65248:1
position: 65248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:65349-65454:1:exon

position:65349:1
position: 65349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65454:1
position: 65454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:65831-65948:1:exon

position:65831:1
position: 65831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65948:1
position: 65948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:66712-66893:1:exon

position:66712:1
position: 66712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66893:1
position: 66893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:67350-67540:1:exon

position:67350:1
position: 67350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67540:1
position: 67540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:67680-67944:1:exon

position:67680:1
position: 67680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116420406
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9305
gene: LOC116420406
product: E3 ubiquitin-protein ligase HUWE1-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_031945285.1
SIO_010081: LOC116420406
subclass of: SO_0000673
so part of: LOC116420406
location: join(46228..46444,46591..46813,47467..47695,48916..49094,49475..49564,49728..49879,50643..50688,51116..51382,51669..51921,52120..52253,54276..54490,54887..55175,55322..55412,57723..58269,58602..59124,59725..59843,59982..60138,60515..60647,60885..61087,61208..61335,62576..62672,63075..63221,63305..63550,63943..64060,64351..64491,64961..65248,65349..65454,65831..65948,66712..66893,67350..67540,67680..67944)
location: region:46228-67944:1
so has part: feature:46228-46444:1:exon
so has part: feature:46591-46813:1:exon
so has part: feature:47467-47695:1:exon
so has part: feature:48916-49094:1:exon
so has part: feature:49475-49564:1:exon
so has part: feature:49728-49879:1:exon
so has part: feature:50643-50688:1:exon
so has part: feature:51116-51382:1:exon
so has part: feature:51669-51921:1:exon
so has part: feature:52120-52253:1:exon
so has part: feature:54276-54490:1:exon
so has part: feature:54887-55175:1:exon
so has part: feature:55322-55412:1:exon
so has part: feature:57723-58269:1:exon
so has part: feature:58602-59124:1:exon
so has part: feature:59725-59843:1:exon
so has part: feature:59982-60138:1:exon
so has part: feature:60515-60647:1:exon
so has part: feature:60885-61087:1:exon
so has part: feature:61208-61335:1:exon
so has part: feature:62576-62672:1:exon
so has part: feature:63075-63221:1:exon
so has part: feature:63305-63550:1:exon
so has part: feature:63943-64060:1:exon
so has part: feature:64351-64491:1:exon
so has part: feature:64961-65248:1:exon
so has part: feature:65349-65454:1:exon
so has part: feature:65831-65948:1:exon
so has part: feature:66712-66893:1:exon
so has part: feature:67350-67540:1:exon
so has part: feature:67680-67944:1:exon

position:46228:1
position: 46228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46228-46444:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:46591-46813:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:47467-47695:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:48916-49094:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:49475-49564:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:49728-49879:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:50643-50688:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:51116-51382:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:51669-51921:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:52120-52253:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:54276-54490:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:54887-55175:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:55322-55412:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:57723-58269:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:58602-59124:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:59725-59843:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:59982-60138:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:60515-60647:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:60885-61087:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:61208-61335:1:exon

position:61335:1
position: 61335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:62576-62672:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:63075-63221:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:63305-63550:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:63943-64060:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:64351-64491:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:64961-65248:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:65349-65454:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:65831-65948:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:66712-66893:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:67350-67540:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:67680-67944:1:exon

LOC116420406
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9305
gene: LOC116420406
product: E3 ubiquitin-protein ligase HUWE1-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_031945286.1
SIO_010081: LOC116420406
subclass of: SO_0000673
so part of: LOC116420406
location: join(46228..46444,46591..46813,47470..47695,48916..49094,49475..49564,49728..49879,50643..50688,51116..51382,51669..51921,52120..52253,54276..54490,54887..55175,55322..55412,57723..58269,58602..59124,59725..59843,59982..60138,60515..60647,60885..61087,61208..61335,62576..62672,63075..63221,63305..63550,63943..64060,64351..64491,64961..65248,65349..65454,65831..65948,66712..66893,67350..67540,67680..67944)
location: region:46228-67944:1
so has part: feature:46228-46444:1:exon
so has part: feature:46591-46813:1:exon
so has part: feature:47470-47695:1:exon
so has part: feature:48916-49094:1:exon
so has part: feature:49475-49564:1:exon
so has part: feature:49728-49879:1:exon
so has part: feature:50643-50688:1:exon
so has part: feature:51116-51382:1:exon
so has part: feature:51669-51921:1:exon
so has part: feature:52120-52253:1:exon
so has part: feature:54276-54490:1:exon
so has part: feature:54887-55175:1:exon
so has part: feature:55322-55412:1:exon
so has part: feature:57723-58269:1:exon
so has part: feature:58602-59124:1:exon
so has part: feature:59725-59843:1:exon
so has part: feature:59982-60138:1:exon
so has part: feature:60515-60647:1:exon
so has part: feature:60885-61087:1:exon
so has part: feature:61208-61335:1:exon
so has part: feature:62576-62672:1:exon
so has part: feature:63075-63221:1:exon
so has part: feature:63305-63550:1:exon
so has part: feature:63943-64060:1:exon
so has part: feature:64351-64491:1:exon
so has part: feature:64961-65248:1:exon
so has part: feature:65349-65454:1:exon
so has part: feature:65831-65948:1:exon
so has part: feature:66712-66893:1:exon
so has part: feature:67350-67540:1:exon
so has part: feature:67680-67944:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:46228-46444:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:46591-46813:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:47470-47695:1:exon

position:47470:1
position: 47470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:48916-49094:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:49475-49564:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:49728-49879:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:50643-50688:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:51116-51382:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:51669-51921:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:52120-52253:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:54276-54490:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:54887-55175:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:55322-55412:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:57723-58269:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:58602-59124:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:59725-59843:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:59982-60138:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:60515-60647:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:60885-61087:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:61208-61335:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:62576-62672:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:63075-63221:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:63305-63550:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:63943-64060:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:64351-64491:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:64961-65248:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:65349-65454:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:65831-65948:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:66712-66893:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:67350-67540:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:67680-67944:1:exon

LOC116420406
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9305
gene: LOC116420406
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase HUWE1-like isoform X1
translation: MNILDPEDEEEHTQEEDSSGSNDDEDDSQDEEEEEEEDDDDQDDEGEEGDEDDEDEDDEEDDEEDEEDEEDEEDDGSEMELDEDYPDMNASPLVRFERFDREDDLIIEFDNMFSSATDIPPSPGNIPATHPLMVRHADHSALTLGSGSSTTRLAQGIGRSQRTLRQLTANTGHTIHVHYPGSRQPNPPLILQRLLGPSAAADILQLSSSLPLQSRGRARLLVGNDDVHIIARSDDELLDDFFHDQSTATSQAGTLSSIPTALTRWTEECKVLDAESMHDCVSVVKVPIINHLESLRDEELEERREKRRKQLAEEEAKIAEMTKDEKEKDQNAQVTTSKTDDTAEQNLSDSTIKPDDYPTTTCPADGISVRPKESLITLETLPSPPAVGELSQQLHVPDTPESSSQLLIPMEQDVLDPTRPIGETEAIQMELSPAPTITSSPERAEDSDVLTAVSSHLEGSPMDTSSLASCNLEEGVGDNVVSSSIEQPGVDTSSTVDIPQPSTETQGSGDGPSESQQQTEDSSPPASSSESSSTRDSAVAISGADSRDNLEEPLPSTSSEEEDPLAGINLPEGVDPSFLAALPDDIRREVLQNQLGIRPPARGTPATTNSVPPVVGNPSLTEVSPEFLAALPPAIQEEVLAQQRAEQQRRELAQNANSDTPMDPVTFIQTLPSDLRRSVLEDMEDSVLAVMPPDIAAEAQALRREQEARQRQLMHERLFGHSSTSALSAILRSPAFTSRLSGNRGVQYTRLAVQRGGTFQMGGSRPSGSNMESLLRLRGRLLLDHEALSCLLVLLFVDEPKLNTSRLHRVLRNLCYHAQTRHWVIRSLLSILQRSSENELCIEIPKSVAAEDKGKKSSKGGTSGSLDGRSLDLLHKMESKSSNQLSWLSVSMDAALGCRTNIFQIQRSGSRKHMEKHTGCGSTVHIHPQAAPVVCRHVLDTLIQLAKVFPSHFTQQRTKETNCESDREKSNKQAGSPCPGQSSSSGISTDFWDLLVKLDNMNVSRKGKNSIRSVPVSAGGEGETFSYSLEGSPLGQLMNMLSHPVIRRSSLLTEKLLRLLSLISIALPENKMPEVLANSVSAVAASCTMATTTTVAAAPVTPILALDVTGAAELTTSNNVSITSTKNIKAPAKSGEGGSGGSADRIVAAGLTENQLQLSVEVLTSHSCSEEGLEDAANVLLQLSRGDSLTRDTVLKLLLNGARHLGYALCKQIGTLLAELREYNLEQLRRTHCETLSPEGLPEEQPQATKLKGKMQSRFDIAENVVIVASQKRPLGGRELQLPSMSMLTSKTSTQKFFLRVLQVIIQLRDDTRRANKKAKQTGRLGTSSLGSASSIQAAVRQLEAEADAIIQMVREGQRARRQQQAATSETGQSEVSTRRDDSPMDVDQPSPSTPEVQSVGVQQGEKEKEERPPDLPLLSEQLSLDELWDMLGECLKELEDSHDQHAVLVLQPAVEAFFLVHATERESKPPVRDTRESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSREPSSMHISSSLPPDTQKFLRFAETHRTVLNQILRQSTTHLSDGPFAVLVDYIRVLDFDVKRKYFRQELEHLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSSLGYDLTFSTEVQEFGVCEVRDLKSNGANILVTEDNKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESYEKLRHMLLLAIQECSEGFGLA
SIO_010081: LOC116420406
subclass of: SO_0000673
so part of: LOC116420406
location: join(46319..46444,46591..46813,47467..47695,48916..49094,49475..49564,49728..49879,50643..50688,51116..51382,51669..51921,52120..52253,54276..54490,54887..55175,55322..55412,57723..58269,58602..59124,59725..59843,59982..60138,60515..60647,60885..61087,61208..61335,62576..62672,63075..63221,63305..63550,63943..64060,64351..64491,64961..65248,65349..65454,65831..65948,66712..66893,67350..67540,67680..67782)
location: region:46319-67782:1
so has part: feature:46319-46444:1:exon
so has part: feature:46591-46813:1:exon
so has part: feature:47467-47695:1:exon
so has part: feature:48916-49094:1:exon
so has part: feature:49475-49564:1:exon
so has part: feature:49728-49879:1:exon
so has part: feature:50643-50688:1:exon
so has part: feature:51116-51382:1:exon
so has part: feature:51669-51921:1:exon
so has part: feature:52120-52253:1:exon
so has part: feature:54276-54490:1:exon
so has part: feature:54887-55175:1:exon
so has part: feature:55322-55412:1:exon
so has part: feature:57723-58269:1:exon
so has part: feature:58602-59124:1:exon
so has part: feature:59725-59843:1:exon
so has part: feature:59982-60138:1:exon
so has part: feature:60515-60647:1:exon
so has part: feature:60885-61087:1:exon
so has part: feature:61208-61335:1:exon
so has part: feature:62576-62672:1:exon
so has part: feature:63075-63221:1:exon
so has part: feature:63305-63550:1:exon
so has part: feature:63943-64060:1:exon
so has part: feature:64351-64491:1:exon
so has part: feature:64961-65248:1:exon
so has part: feature:65349-65454:1:exon
so has part: feature:65831-65948:1:exon
so has part: feature:66712-66893:1:exon
so has part: feature:67350-67540:1:exon
so has part: feature:67680-67782:1:exon

XP_031801145.1
type: Protein
SIO_000068: ncbiprotein

position:46319:1
position: 46319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67782:1
position: 67782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46319-46444:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:46591-46813:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:47467-47695:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:48916-49094:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:49475-49564:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:49728-49879:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:50643-50688:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:51116-51382:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:51669-51921:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:52120-52253:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:54276-54490:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:54887-55175:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:55322-55412:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:57723-58269:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:58602-59124:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:59725-59843:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:59982-60138:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:60515-60647:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:60885-61087:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:61208-61335:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:62576-62672:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:63075-63221:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:63305-63550:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:63943-64060:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:64351-64491:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:64961-65248:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:65349-65454:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:65831-65948:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:66712-66893:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:67350-67540:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:67680-67782:1:exon

LOC116420406
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9305
gene: LOC116420406
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase HUWE1-like isoform X3
translation: MNILDPEDEEEHTQEEDSSGSNDDEDDSQDEEEEEEEDDDDQDDEGEEGDEDDEDEDDEEDDEEDEEDEEDEEDDGSEMELDEDYPDMNASPLVRFERFDREDDLIIEFDNMFSSATDIPPSPGNIPATHPLMVRHADHSALTLGSGSSTTRLAQGIGRSQRTLRQLTANTGHTIHVHYPGSRQPNPPLILQRLLGPSAAADILQLSSSLPLQSRGRARLLVGNDDVHIIARSDDELLDDFFHDQSTATSQAGTLSSIPTALTRWTEECKVLDAESMHDCVSVVKVPIINHLESLRDEELEERREKRRKQLAEEEAKIAEMTKDEKEKDQNAQVTTSKTDDTAEQNLSDSTIKPDDYPTTTCPADGISVRPKESLITLETLPSPPAVGELSQQLHVPDTPESSSQLLIPMEQDVLDPTRPIGETEAIQMELSPAPTITSSPERAEDSDVLTAVSSHLEGSPMDTSSLASCNLEEGVGDNVVSSSIEQPGVDTSSTVDIPQPSTETQGSGDGPSESQQQTEDSSPPASSSESSSTRDSAVAISGADSRDNLEEPLPSTSSEEEDPLAGINLPEGVDPSFLAALPDDIRREVLQNQLGIRPPARGTPATTNSVPPVVGNPSLTEVSPEFLAALPPAIQEEVLAQQRAEQQRRELAQNANSDTPMDPVTFIQTLPSDLRRSVLEDMEDSVLAVMPPDIAAEAQALRREQEARQRQLMHERLFGHSSTSALSAILRSPAFTSRLSGNRGVQYTRLAVQRGGTFQMGGSRPSGSNMESLLRLRGRLLLDHEALSCLLVLLFVDEPKLNTSRLHRVLRNLCYHAQTRHWVIRSLLSILQRSSENELCIEIPKSVAAEDKGKKSSKGGTSGSLDGRSLDLLHKMESKSSNQLSWLSVSMDAALGCRTNIFQIQRSGSRKHMEKHTGCGSTVHIHPQAAPVVCRHVLDTLIQLAKVFPSHFTQQRTKETNCESDREKSNKQAGSPCPGQSSSSGISTDFWDLLVKLDNMNVSRKGKNSIRSVPVSAGGEGETFSYSLEGSPLGQLMNMLSHPVIRRSSLLTEKLLRLLSLISIALPENKMPEVLANSVSAVAASCTMATTTTVAAAPVTPILALDVTGAAELTTSNNVSITSTKNIKAPAKSGEGGSGGSADRIVAAGLTENQLQLSVEVLTSHSCSEEGLEDAANVLLQLSRGDSLTRDTVLKLLLNGARHLGYALCKQIGTLLAELREYNLEQLRRTHCETLSPEGLPEEQPQATKLKGKMQSRFDIAENVVIVASQKRPLGGRELQLPSMSMLTSKTSTQKFFLRVLQVIIQLRDDTRRANKKAKQTGRLGTSSLGSASSIQAAVRQLEAEADAIIQMSETGQSEVSTRRDDSPMDVDQPSPSTPEVQSVGVQQGEKEKEERPPDLPLLSEQLSLDELWDMLGECLKELEDSHDQHAVLVLQPAVEAFFLVHATERESKPPVRDTRESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSREPSSMHISSSLPPDTQKFLRFAETHRTVLNQILRQSTTHLSDGPFAVLVDYIRVLDFDVKRKYFRQELEHLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSSLGYDLTFSTEVQEFGVCEVRDLKSNGANILVTEDNKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESYEKLRHMLLLAIQECSEGFGLA
SIO_010081: LOC116420406
subclass of: SO_0000673
so part of: LOC116420406
location: join(46319..46444,46591..46813,47467..47695,48916..49094,49475..49564,49728..49879,50643..50688,51116..51382,51669..51921,52120..52253,54276..54490,54887..55175,55322..55412,57723..58269,58602..59124,59725..59843,59982..60138,60515..60647,60885..61087,61208..61290,62576..62672,63075..63221,63305..63550,63943..64060,64351..64491,64961..65248,65349..65454,65831..65948,66712..66893,67350..67540,67680..67782)
location: region:46319-67782:1
so has part: feature:46319-46444:1:exon
so has part: feature:46591-46813:1:exon
so has part: feature:47467-47695:1:exon
so has part: feature:48916-49094:1:exon
so has part: feature:49475-49564:1:exon
so has part: feature:49728-49879:1:exon
so has part: feature:50643-50688:1:exon
so has part: feature:51116-51382:1:exon
so has part: feature:51669-51921:1:exon
so has part: feature:52120-52253:1:exon
so has part: feature:54276-54490:1:exon
so has part: feature:54887-55175:1:exon
so has part: feature:55322-55412:1:exon
so has part: feature:57723-58269:1:exon
so has part: feature:58602-59124:1:exon
so has part: feature:59725-59843:1:exon
so has part: feature:59982-60138:1:exon
so has part: feature:60515-60647:1:exon
so has part: feature:60885-61087:1:exon
so has part: feature:61208-61290:1:exon
so has part: feature:62576-62672:1:exon
so has part: feature:63075-63221:1:exon
so has part: feature:63305-63550:1:exon
so has part: feature:63943-64060:1:exon
so has part: feature:64351-64491:1:exon
so has part: feature:64961-65248:1:exon
so has part: feature:65349-65454:1:exon
so has part: feature:65831-65948:1:exon
so has part: feature:66712-66893:1:exon
so has part: feature:67350-67540:1:exon
so has part: feature:67680-67782:1:exon

XP_031801147.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46319-46444:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:46591-46813:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:47467-47695:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:48916-49094:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:49475-49564:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:49728-49879:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:50643-50688:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:51116-51382:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:51669-51921:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:52120-52253:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:54276-54490:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:54887-55175:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:55322-55412:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:57723-58269:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:58602-59124:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:59725-59843:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:59982-60138:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:60515-60647:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:60885-61087:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:61208-61290:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:62576-62672:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:63075-63221:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:63305-63550:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:63943-64060:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:64351-64491:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:64961-65248:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:65349-65454:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:65831-65948:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:66712-66893:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:67350-67540:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:67680-67782:1:exon

LOC116420406
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9305
gene: LOC116420406
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase HUWE1-like isoform X2
translation: MNILDPEDEEEHTQEEDSSGSNDDEDDSQDEEEEEEEDDDDQDDEGEEGDEDDEDEDDEEDDEEDEEDEEDEEDDGSEMELDEDYPDMNASPLVRFERFDREDDLIIEFDNMFSSANIPPSPGNIPATHPLMVRHADHSALTLGSGSSTTRLAQGIGRSQRTLRQLTANTGHTIHVHYPGSRQPNPPLILQRLLGPSAAADILQLSSSLPLQSRGRARLLVGNDDVHIIARSDDELLDDFFHDQSTATSQAGTLSSIPTALTRWTEECKVLDAESMHDCVSVVKVPIINHLESLRDEELEERREKRRKQLAEEEAKIAEMTKDEKEKDQNAQVTTSKTDDTAEQNLSDSTIKPDDYPTTTCPADGISVRPKESLITLETLPSPPAVGELSQQLHVPDTPESSSQLLIPMEQDVLDPTRPIGETEAIQMELSPAPTITSSPERAEDSDVLTAVSSHLEGSPMDTSSLASCNLEEGVGDNVVSSSIEQPGVDTSSTVDIPQPSTETQGSGDGPSESQQQTEDSSPPASSSESSSTRDSAVAISGADSRDNLEEPLPSTSSEEEDPLAGINLPEGVDPSFLAALPDDIRREVLQNQLGIRPPARGTPATTNSVPPVVGNPSLTEVSPEFLAALPPAIQEEVLAQQRAEQQRRELAQNANSDTPMDPVTFIQTLPSDLRRSVLEDMEDSVLAVMPPDIAAEAQALRREQEARQRQLMHERLFGHSSTSALSAILRSPAFTSRLSGNRGVQYTRLAVQRGGTFQMGGSRPSGSNMESLLRLRGRLLLDHEALSCLLVLLFVDEPKLNTSRLHRVLRNLCYHAQTRHWVIRSLLSILQRSSENELCIEIPKSVAAEDKGKKSSKGGTSGSLDGRSLDLLHKMESKSSNQLSWLSVSMDAALGCRTNIFQIQRSGSRKHMEKHTGCGSTVHIHPQAAPVVCRHVLDTLIQLAKVFPSHFTQQRTKETNCESDREKSNKQAGSPCPGQSSSSGISTDFWDLLVKLDNMNVSRKGKNSIRSVPVSAGGEGETFSYSLEGSPLGQLMNMLSHPVIRRSSLLTEKLLRLLSLISIALPENKMPEVLANSVSAVAASCTMATTTTVAAAPVTPILALDVTGAAELTTSNNVSITSTKNIKAPAKSGEGGSGGSADRIVAAGLTENQLQLSVEVLTSHSCSEEGLEDAANVLLQLSRGDSLTRDTVLKLLLNGARHLGYALCKQIGTLLAELREYNLEQLRRTHCETLSPEGLPEEQPQATKLKGKMQSRFDIAENVVIVASQKRPLGGRELQLPSMSMLTSKTSTQKFFLRVLQVIIQLRDDTRRANKKAKQTGRLGTSSLGSASSIQAAVRQLEAEADAIIQMVREGQRARRQQQAATSETGQSEVSTRRDDSPMDVDQPSPSTPEVQSVGVQQGEKEKEERPPDLPLLSEQLSLDELWDMLGECLKELEDSHDQHAVLVLQPAVEAFFLVHATERESKPPVRDTRESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSREPSSMHISSSLPPDTQKFLRFAETHRTVLNQILRQSTTHLSDGPFAVLVDYIRVLDFDVKRKYFRQELEHLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSSLGYDLTFSTEVQEFGVCEVRDLKSNGANILVTEDNKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESYEKLRHMLLLAIQECSEGFGLA
SIO_010081: LOC116420406
subclass of: SO_0000673
so part of: LOC116420406
location: join(46319..46444,46591..46813,47470..47695,48916..49094,49475..49564,49728..49879,50643..50688,51116..51382,51669..51921,52120..52253,54276..54490,54887..55175,55322..55412,57723..58269,58602..59124,59725..59843,59982..60138,60515..60647,60885..61087,61208..61335,62576..62672,63075..63221,63305..63550,63943..64060,64351..64491,64961..65248,65349..65454,65831..65948,66712..66893,67350..67540,67680..67782)
location: region:46319-67782:1
so has part: feature:46319-46444:1:exon
so has part: feature:46591-46813:1:exon
so has part: feature:47470-47695:1:exon
so has part: feature:48916-49094:1:exon
so has part: feature:49475-49564:1:exon
so has part: feature:49728-49879:1:exon
so has part: feature:50643-50688:1:exon
so has part: feature:51116-51382:1:exon
so has part: feature:51669-51921:1:exon
so has part: feature:52120-52253:1:exon
so has part: feature:54276-54490:1:exon
so has part: feature:54887-55175:1:exon
so has part: feature:55322-55412:1:exon
so has part: feature:57723-58269:1:exon
so has part: feature:58602-59124:1:exon
so has part: feature:59725-59843:1:exon
so has part: feature:59982-60138:1:exon
so has part: feature:60515-60647:1:exon
so has part: feature:60885-61087:1:exon
so has part: feature:61208-61335:1:exon
so has part: feature:62576-62672:1:exon
so has part: feature:63075-63221:1:exon
so has part: feature:63305-63550:1:exon
so has part: feature:63943-64060:1:exon
so has part: feature:64351-64491:1:exon
so has part: feature:64961-65248:1:exon
so has part: feature:65349-65454:1:exon
so has part: feature:65831-65948:1:exon
so has part: feature:66712-66893:1:exon
so has part: feature:67350-67540:1:exon
so has part: feature:67680-67782:1:exon

XP_031801146.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46319-46444:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:46591-46813:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:47470-47695:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:48916-49094:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:49475-49564:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:49728-49879:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:50643-50688:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:51116-51382:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:51669-51921:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:52120-52253:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:54276-54490:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:54887-55175:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:55322-55412:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:57723-58269:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:58602-59124:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:59725-59843:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:59982-60138:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:60515-60647:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:60885-61087:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:61208-61335:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:62576-62672:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:63075-63221:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:63305-63550:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:63943-64060:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:64351-64491:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:64961-65248:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:65349-65454:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:65831-65948:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:66712-66893:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:67350-67540:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:67680-67782:1:exon

LOC116420408
type: Gene
subclass of: SO_0000704
RO_0002162: 9305
gene: LOC116420408
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 72816..74235
location: region:72816-74235:1
so has part: feature:72816-74235:1:exon
subclass of: SO_0000010

116420408
type: Gene
SIO_000068: ncbigene

position:72816:1
position: 72816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74235:1
position: 74235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:72816-74235:1:exon

LOC116420408
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9305
gene: LOC116420408
product: sex-determining region Y protein-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 76% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031945289.1
SIO_010081: LOC116420408
subclass of: SO_0000673
so part of: LOC116420408
location: join(72816..73365,74174..74235)
location: region:72816-74235:1
so has part: feature:72816-73365:1:exon
so has part: feature:74174-74235:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:72816-73365:1:exon

position:73365:1
position: 73365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:74174-74235:1:exon

position:74174:1
position: 74174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116420408
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9305
gene: LOC116420408
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sex-determining region Y protein-like
translation: MCSYLNIEVKNPIVEGDFGMSETVKSNLENGSSRVKRPMNAFMVWSQTQRRKMALQNPKMHNSEISKQLGVTWKLLSDSEKRPFIDEAKRLRDKHKAEYPDYKYQPRRKTKSFLKNMYNHKDYRTKVTDSLTKTQHLKEDSTIIYENTMKCPESSSSYCVQEFMYLDNWMNLSPEQENTEFWQGLFINETETCRSLPMIILFF
SIO_010081: LOC116420408
subclass of: SO_0000673
so part of: LOC116420408
location: join(72816..73365,74174..74235)
location: region:72816-74235:1
so has part: feature:72816-73365:1:exon
so has part: feature:74174-74235:1:exon

XP_031801149.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:72816-73365:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:74174-74235:1:exon

LOC116420403
type: Gene
subclass of: SO_0000704
RO_0002162: 9305
gene: LOC116420403
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 77012..103993
location: region:77012-103993:1
so has part: feature:77012-103993:1:exon
subclass of: SO_0000010

116420403
type: Gene
SIO_000068: ncbigene

position:77012:1
position: 77012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:103993:1
position: 103993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77012-103993:1:exon

LOC116420403
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9305
gene: LOC116420403
product: host cell factor 1-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_031945279.1
SIO_010081: LOC116420403
subclass of: SO_0000673
so part of: LOC116420403
location: join(77012..77176,77352..77534,80294..80442,80796..80956,81493..81701,84096..84180,84875..84981,85117..85296,85389..85745,86199..86353,86486..86680,87906..88130,88689..88793,89081..89300,89770..89912,90081..90219,90678..90901,92431..93943,94154..94314,95351..95897,98879..99106,100086..100174,100303..100437,101142..101327,101774..102071,102848..102911,103095..103993)
location: region:77012-103993:1
so has part: feature:77012-77176:1:exon
so has part: feature:77352-77534:1:exon
so has part: feature:80294-80442:1:exon
so has part: feature:80796-80956:1:exon
so has part: feature:81493-81701:1:exon
so has part: feature:84096-84180:1:exon
so has part: feature:84875-84981:1:exon
so has part: feature:85117-85296:1:exon
so has part: feature:85389-85745:1:exon
so has part: feature:86199-86353:1:exon
so has part: feature:86486-86680:1:exon
so has part: feature:87906-88130:1:exon
so has part: feature:88689-88793:1:exon
so has part: feature:89081-89300:1:exon
so has part: feature:89770-89912:1:exon
so has part: feature:90081-90219:1:exon
so has part: feature:90678-90901:1:exon
so has part: feature:92431-93943:1:exon
so has part: feature:94154-94314:1:exon
so has part: feature:95351-95897:1:exon
so has part: feature:98879-99106:1:exon
so has part: feature:100086-100174:1:exon
so has part: feature:100303-100437:1:exon
so has part: feature:101142-101327:1:exon
so has part: feature:101774-102071:1:exon
so has part: feature:102848-102911:1:exon
so has part: feature:103095-103993:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:77012-77176:1:exon

position:77176:1
position: 77176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:77352-77534:1:exon

position:77352:1
position: 77352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:77534:1
position: 77534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:80294-80442:1:exon

position:80294:1
position: 80294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80442:1
position: 80442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:80796-80956:1:exon

position:80796:1
position: 80796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80956:1
position: 80956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:81493-81701:1:exon

position:81493:1
position: 81493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:81701:1
position: 81701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:84096-84180:1:exon

position:84096:1
position: 84096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:84180:1
position: 84180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:84875-84981:1:exon

position:84875:1
position: 84875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:84981:1
position: 84981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:85117-85296:1:exon

position:85117:1
position: 85117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:85296:1
position: 85296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:85389-85745:1:exon

position:85389:1
position: 85389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:85745:1
position: 85745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:86199-86353:1:exon

position:86199:1
position: 86199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:86353:1
position: 86353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:86486-86680:1:exon

position:86486:1
position: 86486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:86680:1
position: 86680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:87906-88130:1:exon

position:87906:1
position: 87906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:88130:1
position: 88130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:88689-88793:1:exon

position:88689:1
position: 88689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:88793:1
position: 88793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:89081-89300:1:exon

position:89081:1
position: 89081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:89300:1
position: 89300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:89770-89912:1:exon

position:89770:1
position: 89770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:89912:1
position: 89912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:90081-90219:1:exon

position:90081:1
position: 90081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:90219:1
position: 90219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:90678-90901:1:exon

position:90678:1
position: 90678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:90901:1
position: 90901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:92431-93943:1:exon

position:92431:1
position: 92431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:93943:1
position: 93943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:94154-94314:1:exon

position:94154:1
position: 94154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:94314:1
position: 94314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:95351-95897:1:exon

position:95351:1
position: 95351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:95897:1
position: 95897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:98879-99106:1:exon

position:98879:1
position: 98879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:99106:1
position: 99106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:100086-100174:1:exon

position:100086:1
position: 100086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:100174:1
position: 100174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:100303-100437:1:exon

position:100303:1
position: 100303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:100437:1
position: 100437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:101142-101327:1:exon

position:101142:1
position: 101142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:101327:1
position: 101327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:101774-102071:1:exon

position:101774:1
position: 101774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:102071:1
position: 102071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:102848-102911:1:exon

position:102848:1
position: 102848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:102911:1
position: 102911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:103095-103993:1:exon

position:103095:1
position: 103095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116420403
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9305
gene: LOC116420403
product: host cell factor 1-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_031945280.1
SIO_010081: LOC116420403
subclass of: SO_0000673
so part of: LOC116420403
location: join(77012..77176,77352..77534,80294..80442,80796..80956,81493..81701,84096..84180,84875..84981,85117..85296,85389..85745,86202..86353,86486..86680,87906..88130,88689..88793,89081..89300,89770..89912,90081..90219,90678..90901,92431..93943,94154..94314,95351..95897,98879..99106,100086..100174,100303..100437,101142..101327,101774..102071,102848..102911,103095..103993)
location: region:77012-103993:1
so has part: feature:77012-77176:1:exon
so has part: feature:77352-77534:1:exon
so has part: feature:80294-80442:1:exon
so has part: feature:80796-80956:1:exon
so has part: feature:81493-81701:1:exon
so has part: feature:84096-84180:1:exon
so has part: feature:84875-84981:1:exon
so has part: feature:85117-85296:1:exon
so has part: feature:85389-85745:1:exon
so has part: feature:86202-86353:1:exon
so has part: feature:86486-86680:1:exon
so has part: feature:87906-88130:1:exon
so has part: feature:88689-88793:1:exon
so has part: feature:89081-89300:1:exon
so has part: feature:89770-89912:1:exon
so has part: feature:90081-90219:1:exon
so has part: feature:90678-90901:1:exon
so has part: feature:92431-93943:1:exon
so has part: feature:94154-94314:1:exon
so has part: feature:95351-95897:1:exon
so has part: feature:98879-99106:1:exon
so has part: feature:100086-100174:1:exon
so has part: feature:100303-100437:1:exon
so has part: feature:101142-101327:1:exon
so has part: feature:101774-102071:1:exon
so has part: feature:102848-102911:1:exon
so has part: feature:103095-103993:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:77012-77176:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:77352-77534:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:80294-80442:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:80796-80956:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:81493-81701:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:84096-84180:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:84875-84981:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:85117-85296:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:85389-85745:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:86202-86353:1:exon

position:86202:1
position: 86202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:86486-86680:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:87906-88130:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:88689-88793:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:89081-89300:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:89770-89912:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:90081-90219:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:90678-90901:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:92431-93943:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:94154-94314:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:95351-95897:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:98879-99106:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:100086-100174:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:100303-100437:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:101142-101327:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:101774-102071:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:102848-102911:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:103095-103993:1:exon

LOC116420403
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9305
gene: LOC116420403
product: host cell factor 1-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_031945281.1
SIO_010081: LOC116420403
subclass of: SO_0000673
so part of: LOC116420403
location: join(77012..77176,77352..77534,80294..80442,80796..80956,81493..81701,85117..85296,85389..85745,86199..86353,86486..86680,87906..88130,88689..88793,89081..89300,89770..89912,90081..90219,90678..90901,92431..93943,94154..94314,95351..95897,98879..99106,100086..100174,100303..100437,101142..101327,101774..102071,102848..102911,103095..103993)
location: region:77012-103993:1
so has part: feature:77012-77176:1:exon
so has part: feature:77352-77534:1:exon
so has part: feature:80294-80442:1:exon
so has part: feature:80796-80956:1:exon
so has part: feature:81493-81701:1:exon
so has part: feature:85117-85296:1:exon
so has part: feature:85389-85745:1:exon
so has part: feature:86199-86353:1:exon
so has part: feature:86486-86680:1:exon
so has part: feature:87906-88130:1:exon
so has part: feature:88689-88793:1:exon
so has part: feature:89081-89300:1:exon
so has part: feature:89770-89912:1:exon
so has part: feature:90081-90219:1:exon
so has part: feature:90678-90901:1:exon
so has part: feature:92431-93943:1:exon
so has part: feature:94154-94314:1:exon
so has part: feature:95351-95897:1:exon
so has part: feature:98879-99106:1:exon
so has part: feature:100086-100174:1:exon
so has part: feature:100303-100437:1:exon
so has part: feature:101142-101327:1:exon
so has part: feature:101774-102071:1:exon
so has part: feature:102848-102911:1:exon
so has part: feature:103095-103993:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:77012-77176:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:77352-77534:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:80294-80442:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:80796-80956:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:81493-81701:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:85117-85296:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:85389-85745:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:86199-86353:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:86486-86680:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:87906-88130:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:88689-88793:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:89081-89300:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:89770-89912:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:90081-90219:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:90678-90901:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:92431-93943:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:94154-94314:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:95351-95897:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:98879-99106:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:100086-100174:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:100303-100437:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:101142-101327:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:101774-102071:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:102848-102911:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:103095-103993:1:exon

LOC116420403
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9305
gene: LOC116420403
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: host cell factor 1-like isoform X1
translation: MASVPSSLFLQPRWKRVVGWSGPVPRPRHGHRAVSIKELIVVFGGGNEGIVDELHVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKKLKVKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELCPGSGAVAWDIPITYGVLPPPRESHTAIVYKEKEKKKSKLVIYGGMSGCRLGDLWILDIETLMWNKPNLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDMLEDNIPRARAGHCAVAINTRLYIWSGRDGYRKAWNNQVCCKDLWYLETEKPSAPSRVHLVRANTNSLEVSWGSVPTADSYLLQLQKYDTPPAAAATSPIINPVPSMPANPPKSPAPATIAPTIQPLTQMGITLFPQSSVTPPTTNPIQVLPTVPGSSISVSTMTRTQAGVLKVTGPQLTTGNPVVTVRPSSQAGKAPLTVTSLPTGVRMVVPTPSSQAMVVGSSPQMSGMAALAAAAAATQKIPPSVPTVLSVPAGTTVVKTVAVSTGTTTLPATVKMASSPVMVSNPATRMLKTAAAQVGTSVSSNNSTPTRPIITVHKSGTVTVAQQAQVVTTVVGGVTKTITLVKSPLSVPSGSALISNLGKVMSVVQTKPVQTSAVTGQASTNPVTQIIQTKGPLPAGTILKLVTSSDGKPTTIITTTQASGTGTKPTILGISSVSPSTTKPGTTTIIKTIPVSAIITQSGATGVTSSPGIKSPITIITTKVMTSGTGTPAKIITAVPKIATGHNQQGVTQVVLKGAPGQPGTILRTLPMSGVRLVTPVTVSAVKPTVTTLVVKGTTGVTTLGTVTGTVSTSLAGAGGHNVSASLATPITTLGTIATLSSQVINPTTAITVSSAQTTVTTSGALTTPTITVQPVSQPTQVTLITPQGGVETQPVHDLPVSILASPTTEQPTATVTIAEAGQGDMQSGTVTLVCSNPPCEIHETSTTNTSTTSMVANIGDFPQTTQVQLICDGQDISASEQQNANMSICSNQLCETPETSISSASMGIGANLTSSLTVDMGQILCINPHCETHETNTTNTTTTAISNINRQNVCSNPPCETHETGTTNTATTATSNIGTMQSASPSPQHEKHIQTDDLLVSVQSSISEELKGSCSLTRSSCQTHQSGSTCITLSMKSIEVSSATTIQICQKSSSKEIISNMTTSKGFYTQSIKAEQTSPPTVGNMSGLKPLIWHSETQHIHKTSVPTMGQVSIDAKETIEIPTYPKPLCLLHQDLTKTTKTIGTQQCSSLCENYETGIMSAMDNVDYNPACEIHKTNSTTTTSCLVISHNNSLQQTSLSNQETIISENQEPPYVPKTLTTVTDLVELPPKVTCTSKNRSPSGDTSGPKLCSNPPHETHETGTTHTATTVTSNMGSNEVSPPATSGHEDLGNIQGTSVITTSFSSVTTATFDQSQALTTMTQSTLVPKPSVPSLSLMIEAPPEEKTNIPAPDAVSSTVPSIEASLSVIHVLDSDEIKAKQMLREKIALSSPLLQSSQYTGPSLKEQSQLPKNLVAVDNNAKEFPSDQDHTNSAAVTSIMVQHPPSQQPEVFQHSLPHELMAEGQVDQTTLMVSGFSPEEFAVTTAADTAAHAIASEEAQTLAMHALQAAQQAIMGTSGQPMGTIVTQTELGYLPTIQEGQSTTIPLVLTQQELAVLVQQQHQDHVPTEALAPADSLNDPTIESNDFKNPSSLTASNTFVTPPSVMVASTNKLQATTALTEKPELAHSTIRALIKKENQWFDVGVIKGTNMMVTHFLPSDDTSAMDYDSNIIPNYSQLKKQELLPGTAYKFRVAGLNACGRGPFSEISAFKTCFPGFPGAPCAIKISKMPDGAHLTWEPPSMTSGKITEYSVYLAIQSSQLGEQKIATPTQLAFLRVYCGSNPSCLVQSSSLSSAHIDCTTKAAIIFRIAARNEKGYGPATQVRWLQESNK…
SIO_010081: LOC116420403
subclass of: SO_0000673
so part of: LOC116420403
location: join(77357..77534,80294..80442,80796..80956,81493..81701,84096..84180,84875..84981,85117..85296,85389..85745,86199..86353,86486..86680,87906..88130,88689..88793,89081..89300,89770..89912,90081..90219,90678..90901,92431..93943,94154..94314,95351..95897,98879..99106,100086..100174,100303..100437,101142..101327,101774..102071,102848..102911,103095..103134)
location: region:77357-103134:1
so has part: feature:77357-77534:1:exon
so has part: feature:80294-80442:1:exon
so has part: feature:80796-80956:1:exon
so has part: feature:81493-81701:1:exon
so has part: feature:84096-84180:1:exon
so has part: feature:84875-84981:1:exon
so has part: feature:85117-85296:1:exon
so has part: feature:85389-85745:1:exon
so has part: feature:86199-86353:1:exon
so has part: feature:86486-86680:1:exon
so has part: feature:87906-88130:1:exon
so has part: feature:88689-88793:1:exon
so has part: feature:89081-89300:1:exon
so has part: feature:89770-89912:1:exon
so has part: feature:90081-90219:1:exon
so has part: feature:90678-90901:1:exon
so has part: feature:92431-93943:1:exon
so has part: feature:94154-94314:1:exon
so has part: feature:95351-95897:1:exon
so has part: feature:98879-99106:1:exon
so has part: feature:100086-100174:1:exon
so has part: feature:100303-100437:1:exon
so has part: feature:101142-101327:1:exon
so has part: feature:101774-102071:1:exon
so has part: feature:102848-102911:1:exon
so has part: feature:103095-103134:1:exon

XP_031801139.1
type: Protein
SIO_000068: ncbiprotein

position:77357:1
position: 77357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:103134:1
position: 103134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77357-77534:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:80294-80442:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:80796-80956:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:81493-81701:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:84096-84180:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:84875-84981:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:85117-85296:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:85389-85745:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:86199-86353:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:86486-86680:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:87906-88130:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:88689-88793:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:89081-89300:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:89770-89912:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:90081-90219:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:90678-90901:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:92431-93943:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:94154-94314:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:95351-95897:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:98879-99106:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:100086-100174:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:100303-100437:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:101142-101327:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:101774-102071:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:102848-102911:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:103095-103134:1:exon

LOC116420403
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9305
gene: LOC116420403
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: host cell factor 1-like isoform X2
translation: MASVPSSLFLQPRWKRVVGWSGPVPRPRHGHRAVSIKELIVVFGGGNEGIVDELHVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKKLKVKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELCPGSGAVAWDIPITYGVLPPPRESHTAIVYKEKEKKKSKLVIYGGMSGCRLGDLWILDIETLMWNKPNLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDMLEDNIPRARAGHCAVAINTRLYIWSGRDGYRKAWNNQVCCKDLWYLETEKPSAPSRVHLVRANTNSLEVSWGSVPTADSYLLQLQKYDTPPAAAATSPIINPVPSMPANPPKSPAPATIAPTIQPLTQMGITLFPQSSVTPPTTNPIQVLPTVPGSSISVSTMTRTQGVLKVTGPQLTTGNPVVTVRPSSQAGKAPLTVTSLPTGVRMVVPTPSSQAMVVGSSPQMSGMAALAAAAAATQKIPPSVPTVLSVPAGTTVVKTVAVSTGTTTLPATVKMASSPVMVSNPATRMLKTAAAQVGTSVSSNNSTPTRPIITVHKSGTVTVAQQAQVVTTVVGGVTKTITLVKSPLSVPSGSALISNLGKVMSVVQTKPVQTSAVTGQASTNPVTQIIQTKGPLPAGTILKLVTSSDGKPTTIITTTQASGTGTKPTILGISSVSPSTTKPGTTTIIKTIPVSAIITQSGATGVTSSPGIKSPITIITTKVMTSGTGTPAKIITAVPKIATGHNQQGVTQVVLKGAPGQPGTILRTLPMSGVRLVTPVTVSAVKPTVTTLVVKGTTGVTTLGTVTGTVSTSLAGAGGHNVSASLATPITTLGTIATLSSQVINPTTAITVSSAQTTVTTSGALTTPTITVQPVSQPTQVTLITPQGGVETQPVHDLPVSILASPTTEQPTATVTIAEAGQGDMQSGTVTLVCSNPPCEIHETSTTNTSTTSMVANIGDFPQTTQVQLICDGQDISASEQQNANMSICSNQLCETPETSISSASMGIGANLTSSLTVDMGQILCINPHCETHETNTTNTTTTAISNINRQNVCSNPPCETHETGTTNTATTATSNIGTMQSASPSPQHEKHIQTDDLLVSVQSSISEELKGSCSLTRSSCQTHQSGSTCITLSMKSIEVSSATTIQICQKSSSKEIISNMTTSKGFYTQSIKAEQTSPPTVGNMSGLKPLIWHSETQHIHKTSVPTMGQVSIDAKETIEIPTYPKPLCLLHQDLTKTTKTIGTQQCSSLCENYETGIMSAMDNVDYNPACEIHKTNSTTTTSCLVISHNNSLQQTSLSNQETIISENQEPPYVPKTLTTVTDLVELPPKVTCTSKNRSPSGDTSGPKLCSNPPHETHETGTTHTATTVTSNMGSNEVSPPATSGHEDLGNIQGTSVITTSFSSVTTATFDQSQALTTMTQSTLVPKPSVPSLSLMIEAPPEEKTNIPAPDAVSSTVPSIEASLSVIHVLDSDEIKAKQMLREKIALSSPLLQSSQYTGPSLKEQSQLPKNLVAVDNNAKEFPSDQDHTNSAAVTSIMVQHPPSQQPEVFQHSLPHELMAEGQVDQTTLMVSGFSPEEFAVTTAADTAAHAIASEEAQTLAMHALQAAQQAIMGTSGQPMGTIVTQTELGYLPTIQEGQSTTIPLVLTQQELAVLVQQQHQDHVPTEALAPADSLNDPTIESNDFKNPSSLTASNTFVTPPSVMVASTNKLQATTALTEKPELAHSTIRALIKKENQWFDVGVIKGTNMMVTHFLPSDDTSAMDYDSNIIPNYSQLKKQELLPGTAYKFRVAGLNACGRGPFSEISAFKTCFPGFPGAPCAIKISKMPDGAHLTWEPPSMTSGKITEYSVYLAIQSSQLGEQKIATPTQLAFLRVYCGSNPSCLVQSSSLSSAHIDCTTKAAIIFRIAARNEKGYGPATQVRWLQESNKD…
SIO_010081: LOC116420403
subclass of: SO_0000673
so part of: LOC116420403
location: join(77357..77534,80294..80442,80796..80956,81493..81701,84096..84180,84875..84981,85117..85296,85389..85745,86202..86353,86486..86680,87906..88130,88689..88793,89081..89300,89770..89912,90081..90219,90678..90901,92431..93943,94154..94314,95351..95897,98879..99106,100086..100174,100303..100437,101142..101327,101774..102071,102848..102911,103095..103134)
location: region:77357-103134:1
so has part: feature:77357-77534:1:exon
so has part: feature:80294-80442:1:exon
so has part: feature:80796-80956:1:exon
so has part: feature:81493-81701:1:exon
so has part: feature:84096-84180:1:exon
so has part: feature:84875-84981:1:exon
so has part: feature:85117-85296:1:exon
so has part: feature:85389-85745:1:exon
so has part: feature:86202-86353:1:exon
so has part: feature:86486-86680:1:exon
so has part: feature:87906-88130:1:exon
so has part: feature:88689-88793:1:exon
so has part: feature:89081-89300:1:exon
so has part: feature:89770-89912:1:exon
so has part: feature:90081-90219:1:exon
so has part: feature:90678-90901:1:exon
so has part: feature:92431-93943:1:exon
so has part: feature:94154-94314:1:exon
so has part: feature:95351-95897:1:exon
so has part: feature:98879-99106:1:exon
so has part: feature:100086-100174:1:exon
so has part: feature:100303-100437:1:exon
so has part: feature:101142-101327:1:exon
so has part: feature:101774-102071:1:exon
so has part: feature:102848-102911:1:exon
so has part: feature:103095-103134:1:exon

XP_031801140.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:77357-77534:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:80294-80442:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:80796-80956:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:81493-81701:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:84096-84180:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:84875-84981:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:85117-85296:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:85389-85745:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:86202-86353:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:86486-86680:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:87906-88130:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:88689-88793:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:89081-89300:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:89770-89912:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:90081-90219:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:90678-90901:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:92431-93943:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:94154-94314:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:95351-95897:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:98879-99106:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:100086-100174:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:100303-100437:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:101142-101327:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:101774-102071:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:102848-102911:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:103095-103134:1:exon

LOC116420403
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9305
gene: LOC116420403
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: host cell factor 1-like isoform X3
translation: MASVPSSLFLQPRWKRVVGWSGPVPRPRHGHRAVSIKELIVVFGGGNEGIVDELHVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKKLKVKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELCPGSGAVAWDIPITYGVLPPPRESHTAIVYKEKEKKKSKLVIYGGMSGCRLGDLWILDIDTMAWETILMDMLEDNIPRARAGHCAVAINTRLYIWSGRDGYRKAWNNQVCCKDLWYLETEKPSAPSRVHLVRANTNSLEVSWGSVPTADSYLLQLQKYDTPPAAAATSPIINPVPSMPANPPKSPAPATIAPTIQPLTQMGITLFPQSSVTPPTTNPIQVLPTVPGSSISVSTMTRTQAGVLKVTGPQLTTGNPVVTVRPSSQAGKAPLTVTSLPTGVRMVVPTPSSQAMVVGSSPQMSGMAALAAAAAATQKIPPSVPTVLSVPAGTTVVKTVAVSTGTTTLPATVKMASSPVMVSNPATRMLKTAAAQVGTSVSSNNSTPTRPIITVHKSGTVTVAQQAQVVTTVVGGVTKTITLVKSPLSVPSGSALISNLGKVMSVVQTKPVQTSAVTGQASTNPVTQIIQTKGPLPAGTILKLVTSSDGKPTTIITTTQASGTGTKPTILGISSVSPSTTKPGTTTIIKTIPVSAIITQSGATGVTSSPGIKSPITIITTKVMTSGTGTPAKIITAVPKIATGHNQQGVTQVVLKGAPGQPGTILRTLPMSGVRLVTPVTVSAVKPTVTTLVVKGTTGVTTLGTVTGTVSTSLAGAGGHNVSASLATPITTLGTIATLSSQVINPTTAITVSSAQTTVTTSGALTTPTITVQPVSQPTQVTLITPQGGVETQPVHDLPVSILASPTTEQPTATVTIAEAGQGDMQSGTVTLVCSNPPCEIHETSTTNTSTTSMVANIGDFPQTTQVQLICDGQDISASEQQNANMSICSNQLCETPETSISSASMGIGANLTSSLTVDMGQILCINPHCETHETNTTNTTTTAISNINRQNVCSNPPCETHETGTTNTATTATSNIGTMQSASPSPQHEKHIQTDDLLVSVQSSISEELKGSCSLTRSSCQTHQSGSTCITLSMKSIEVSSATTIQICQKSSSKEIISNMTTSKGFYTQSIKAEQTSPPTVGNMSGLKPLIWHSETQHIHKTSVPTMGQVSIDAKETIEIPTYPKPLCLLHQDLTKTTKTIGTQQCSSLCENYETGIMSAMDNVDYNPACEIHKTNSTTTTSCLVISHNNSLQQTSLSNQETIISENQEPPYVPKTLTTVTDLVELPPKVTCTSKNRSPSGDTSGPKLCSNPPHETHETGTTHTATTVTSNMGSNEVSPPATSGHEDLGNIQGTSVITTSFSSVTTATFDQSQALTTMTQSTLVPKPSVPSLSLMIEAPPEEKTNIPAPDAVSSTVPSIEASLSVIHVLDSDEIKAKQMLREKIALSSPLLQSSQYTGPSLKEQSQLPKNLVAVDNNAKEFPSDQDHTNSAAVTSIMVQHPPSQQPEVFQHSLPHELMAEGQVDQTTLMVSGFSPEEFAVTTAADTAAHAIASEEAQTLAMHALQAAQQAIMGTSGQPMGTIVTQTELGYLPTIQEGQSTTIPLVLTQQELAVLVQQQHQDHVPTEALAPADSLNDPTIESNDFKNPSSLTASNTFVTPPSVMVASTNKLQATTALTEKPELAHSTIRALIKKENQWFDVGVIKGTNMMVTHFLPSDDTSAMDYDSNIIPNYSQLKKQELLPGTAYKFRVAGLNACGRGPFSEISAFKTCFPGFPGAPCAIKISKMPDGAHLTWEPPSMTSGKITEYSVYLAIQSSQLGEQKIATPTQLAFLRVYCGSNPSCLVQSSSLSSAHIDCTTKAAIIFRIAARNEKGYGPATQVRWLQESNKDGSNVKPANKRLLSSSEMKSTLKKSKTDGQ
SIO_010081: LOC116420403
subclass of: SO_0000673
so part of: LOC116420403
location: join(77357..77534,80294..80442,80796..80956,81493..81701,85117..85296,85389..85745,86199..86353,86486..86680,87906..88130,88689..88793,89081..89300,89770..89912,90081..90219,90678..90901,92431..93943,94154..94314,95351..95897,98879..99106,100086..100174,100303..100437,101142..101327,101774..102071,102848..102911,103095..103134)
location: region:77357-103134:1
so has part: feature:77357-77534:1:exon
so has part: feature:80294-80442:1:exon
so has part: feature:80796-80956:1:exon
so has part: feature:81493-81701:1:exon
so has part: feature:85117-85296:1:exon
so has part: feature:85389-85745:1:exon
so has part: feature:86199-86353:1:exon
so has part: feature:86486-86680:1:exon
so has part: feature:87906-88130:1:exon
so has part: feature:88689-88793:1:exon
so has part: feature:89081-89300:1:exon
so has part: feature:89770-89912:1:exon
so has part: feature:90081-90219:1:exon
so has part: feature:90678-90901:1:exon
so has part: feature:92431-93943:1:exon
so has part: feature:94154-94314:1:exon
so has part: feature:95351-95897:1:exon
so has part: feature:98879-99106:1:exon
so has part: feature:100086-100174:1:exon
so has part: feature:100303-100437:1:exon
so has part: feature:101142-101327:1:exon
so has part: feature:101774-102071:1:exon
so has part: feature:102848-102911:1:exon
so has part: feature:103095-103134:1:exon

XP_031801141.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:77357-77534:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:80294-80442:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:80796-80956:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:81493-81701:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:85117-85296:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:85389-85745:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:86199-86353:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:86486-86680:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:87906-88130:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:88689-88793:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:89081-89300:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:89770-89912:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:90081-90219:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:90678-90901:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:92431-93943:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:94154-94314:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:95351-95897:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:98879-99106:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:100086-100174:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:100303-100437:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:101142-101327:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:101774-102071:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:102848-102911:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:103095-103134:1:exon

LOC116420404
type: Gene
subclass of: SO_0000704
RO_0002162: 9305
gene: LOC116420404
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(108293..111403)
location: region:108293-111403:-1
so has part: feature:108293-111403:-1:exon
subclass of: SO_0000010

116420404
type: Gene
SIO_000068: ncbigene

position:108293:-1
position: 108293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:111403:-1
position: 111403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:108293-111403:-1:exon

LOC116420404
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9305
gene: LOC116420404
product: 60S ribosomal protein L10-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XM_031945282.1
SIO_010081: LOC116420404
subclass of: SO_0000673
so part of: LOC116420404
location: complement(join(108293..108533,108907..109069,109412..109550,109779..109886,110075..110133,111316..111403))
location: region:108293-111403:-1
so has part: feature:111316-111403:-1:exon
so has part: feature:110075-110133:-1:exon
so has part: feature:109779-109886:-1:exon
so has part: feature:109412-109550:-1:exon
so has part: feature:108907-109069:-1:exon
so has part: feature:108293-108533:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:111316-111403:-1:exon

position:111316:-1
position: 111316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:110075-110133:-1:exon

position:110075:-1
position: 110075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:110133:-1
position: 110133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:109779-109886:-1:exon

position:109779:-1
position: 109779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:109886:-1
position: 109886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:109412-109550:-1:exon

position:109412:-1
position: 109412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:109550:-1
position: 109550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:108907-109069:-1:exon

position:108907:-1
position: 108907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:109069:-1
position: 109069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:108293-108533:-1:exon

position:108533:-1
position: 108533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116420404
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9305
gene: LOC116420404
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 60S ribosomal protein L10-like
translation: MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKIQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPSRGPLDKWRAFHSS
SIO_010081: LOC116420404
subclass of: SO_0000673
so part of: LOC116420404
location: complement(join(108378..108533,108907..109069,109412..109550,109779..109886,110075..110133,111316..111338))
location: region:108378-111338:-1
so has part: feature:111316-111338:-1:exon
so has part: feature:110075-110133:-1:exon
so has part: feature:109779-109886:-1:exon
so has part: feature:109412-109550:-1:exon
so has part: feature:108907-109069:-1:exon
so has part: feature:108378-108533:-1:exon

XP_031801142.1
type: Protein
SIO_000068: ncbiprotein

position:108378:-1
position: 108378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:111338:-1
position: 111338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:111316-111338:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:110075-110133:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:109779-109886:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:109412-109550:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:108907-109069:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:108378-108533:-1:exon