Ketogulonicigenium robustum strain SPU_B003 plasmid unnamed3, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Ketogulonicigenium.
Ketogulonicigenium robustum SPU B003 Genome sequencing and assembly
Submitted (22-FEB-2017) Shenyang Pharmaceutical University, School of Life Science and Biological Pharmacy, Wenhua Road, 103th, Shenyang, Liaoning 110016, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP019940.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: GS De Novo Assmbler v. 2.5.3\nGenome Coverage :: 20.49\nSequencing Technology :: 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 05:22:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,696\nCDSs (total) :: 2,613\nGenes (coding) :: 2,581\nCDSs (with protein) :: 2,581\nGenes (RNA) :: 83\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 62\nncRNAs :: 3\nPseudo Genes (total) :: 32\nCDSs (without protein) :: 32\nPseudo Genes (ambiguous residues) :: 0 of 32\nPseudo Genes (frameshifted) :: 19 of 32\nPseudo Genes (incomplete) :: 17 of 32\nPseudo Genes (internal stop) :: 8 of 32\nPseudo Genes (multiple problems) :: 12 of 32\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004213409.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005848907.1
COORDINATES: similar to AA sequence:RefSeq:WP_009813581.1
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF041496.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824546.1
COORDINATES: similar to AA sequence:RefSeq:WP_014129874.1
putative addiction module antidote protein
COORDINATES: similar to AA sequence:RefSeq:WP_002813764.1
type II toxin-antitoxin system RelE/ParE family toxin