Ketogulonicigenium robustum strain SPU_B003 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Ketogulonicigenium.
Ketogulonicigenium robustum SPU B003 Genome sequencing and assembly
Submitted (22-FEB-2017) Shenyang Pharmaceutical University, School of Life Science and Biological Pharmacy, Wenhua Road, 103th, Shenyang, Liaoning 110016, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP019938.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: GS De Novo Assmbler v. 2.5.3\nGenome Coverage :: 20.49\nSequencing Technology :: 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 05:22:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,696\nCDSs (total) :: 2,613\nGenes (coding) :: 2,581\nCDSs (with protein) :: 2,581\nGenes (RNA) :: 83\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 62\nncRNAs :: 3\nPseudo Genes (total) :: 32\nCDSs (without protein) :: 32\nPseudo Genes (ambiguous residues) :: 0 of 32\nPseudo Genes (frameshifted) :: 19 of 32\nPseudo Genes (incomplete) :: 17 of 32\nPseudo Genes (internal stop) :: 8 of 32\nPseudo Genes (multiple problems) :: 12 of 32\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013385643.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013385642.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011907123.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611842.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007879292.1
COORDINATES: similar to AA sequence:RefSeq:WP_013384295.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013384296.1
COORDINATES: similar to AA sequence:RefSeq:WP_013384297.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018315994.1
COORDINATES: similar to AA sequence:RefSeq:WP_014537729.1
COORDINATES: similar to AA sequence:RefSeq:WP_013384300.1
COORDINATES: similar to AA sequence:RefSeq:WP_014538186.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006472104.1
COORDINATES: similar to AA sequence:RefSeq:WP_013385763.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013385761.1
COORDINATES: similar to AA sequence:RefSeq:WP_020612975.1
COORDINATES: protein motif:HMM:NF014684.2
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF014647.2
COORDINATES: similar to AA sequence:RefSeq:WP_013384951.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_014537925.1
COORDINATES: similar to AA sequence:RefSeq:WP_013384949.1
COORDINATES: similar to AA sequence:RefSeq:WP_014537471.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
glycoside hydrolase family 3 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013383474.1
COORDINATES: similar to AA sequence:RefSeq:WP_013383473.1
COORDINATES: similar to AA sequence:RefSeq:WP_013383472.1
COORDINATES: similar to AA sequence:RefSeq:WP_013383471.1
COORDINATES: similar to AA sequence:RefSeq:WP_013383470.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018187718.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396189.1
COORDINATES: protein motif:HMM:NF013998.2
COORDINATES: similar to AA sequence:RefSeq:WP_013382886.1
COORDINATES: protein motif:HMM:NF012321.2
COORDINATES: similar to AA sequence:RefSeq:WP_013382882.1
COORDINATES: similar to AA sequence:RefSeq:WP_013382881.1
COORDINATES: similar to AA sequence:RefSeq:WP_014538200.1
COORDINATES: similar to AA sequence:RefSeq:WP_010391824.1
COORDINATES: similar to AA sequence:RefSeq:WP_013385808.1
COORDINATES: similar to AA sequence:RefSeq:WP_010894211.1
COORDINATES: similar to AA sequence:RefSeq:WP_013384393.1
COORDINATES: similar to AA sequence:RefSeq:WP_013368441.1
COORDINATES: similar to AA sequence:RefSeq:WP_014538241.1
COORDINATES: similar to AA sequence:RefSeq:WP_014538240.1
COORDINATES: similar to AA sequence:RefSeq:WP_013368437.1
COORDINATES: similar to AA sequence:RefSeq:WP_007797602.1
COORDINATES: similar to AA sequence:RefSeq:WP_013368435.1
4-hydroxy-4-methyl-2-oxoglutarate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_013368434.1
COORDINATES: similar to AA sequence:RefSeq:WP_013368433.1
COORDINATES: similar to AA sequence:RefSeq:WP_013953532.1
esterase-like activity of phytase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020295437.1
GO:0016020 - membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
COORDINATES: similar to AA sequence:RefSeq:WP_010671486.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012653256.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_007666546.1
GO:0004180 - carboxypeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024795.2
COORDINATES: similar to AA sequence:RefSeq:WP_011749687.1
COORDINATES: similar to AA sequence:RefSeq:WP_013384103.1
COORDINATES: similar to AA sequence:RefSeq:WP_013384102.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013384101.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]; GO:0042908 - xenobiotic transport [Evidence IEA]
multidrug efflux RND transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013384100.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014538083.1
COORDINATES: protein motif:HMM:NF013652.2
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013385802.1
COORDINATES: similar to AA sequence:RefSeq:WP_005851466.1
GO:0008675 - 2-dehydro-3-deoxy-phosphogluconate aldolase activity [Evidence IEA]; GO:0008700 - 4-hydroxy-2-oxoglutarate aldolase activity [Evidence IEA]
GO:0009255 - Entner-Doudoroff pathway through 6-phosphogluconate [Evidence IEA]; GO:0009084 - glutamine family amino acid biosynthetic process [Evidence IEA]
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_013068120.1
GO:0004456 - phosphogluconate dehydratase activity [Evidence IEA]
GO:0009255 - Entner-Doudoroff pathway through 6-phosphogluconate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009251718.1
COORDINATES: similar to AA sequence:RefSeq:WP_013360801.1
COORDINATES: similar to AA sequence:RefSeq:WP_003428182.1
COORDINATES: similar to AA sequence:RefSeq:WP_019016133.1
GO:0015833 - peptide transport [Evidence IEA]
dipeptide ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF012706.2
peptide ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005862136.1
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: protein motif:HMM:NF018979.2
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009208162.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_005862131.1
COORDINATES: similar to AA sequence:RefSeq:WP_007068080.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002724704.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_008019871.1
GO:0050032 - L-rhamnonate dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020040445.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396957.1
COORDINATES: similar to AA sequence:RefSeq:WP_003525357.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396961.1
COORDINATES: similar to AA sequence:RefSeq:WP_003525354.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011751300.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010396968.1
COORDINATES: similar to AA sequence:RefSeq:WP_013385741.1
COORDINATES: similar to AA sequence:RefSeq:WP_018428293.1
COORDINATES: similar to AA sequence:RefSeq:WP_018185341.1
COORDINATES: similar to AA sequence:RefSeq:WP_003526783.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014528678.1
COORDINATES: similar to AA sequence:RefSeq:WP_003536994.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_018096285.1
COORDINATES: similar to AA sequence:RefSeq:WP_014528681.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976376.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649281.1
COORDINATES: similar to AA sequence:RefSeq:WP_012333244.1
COORDINATES: similar to AA sequence:RefSeq:WP_013067195.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_009502336.1
nitrilase-related carbon-nitrogen hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_018001375.1
COORDINATES: protein motif:HMM:NF014373.2
COORDINATES: similar to AA sequence:RefSeq:WP_013385649.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013385648.1
COORDINATES: similar to AA sequence:RefSeq:WP_013385647.1
sugar dehydrogenase complex small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013385646.1
COORDINATES: protein motif:HMM:NF015418.2
COORDINATES: protein motif:HMM:NF022115.2
COORDINATES: similar to AA sequence:RefSeq:WP_018633628.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001468.1
COORDINATES: similar to AA sequence:RefSeq:WP_018633630.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747203.1
COORDINATES: similar to AA sequence:RefSeq:WP_013385700.1
COORDINATES: similar to AA sequence:RefSeq:WP_013385748.1
COORDINATES: similar to AA sequence:RefSeq:WP_013385749.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF015094.2
COORDINATES: similar to AA sequence:RefSeq:WP_014538198.1
glycine betaine/L-proline ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013385796.1
proline/glycine betaine ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011339009.1
COORDINATES: protein motif:HMM:TIGR02937.1
COORDINATES: protein motif:HMM:NF016648.2
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: similar to AA sequence:RefSeq:WP_013368568.1
COORDINATES: similar to AA sequence:RefSeq:WP_013368567.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649918.1
COORDINATES: similar to AA sequence:RefSeq:WP_014538277.1
COORDINATES: similar to AA sequence:RefSeq:WP_013368564.1
COORDINATES: similar to AA sequence:RefSeq:WP_013368563.1
COORDINATES: similar to AA sequence:RefSeq:WP_015342341.1
COORDINATES: similar to AA sequence:RefSeq:WP_010973784.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003504612.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013383272.1
COORDINATES: similar to AA sequence:RefSeq:WP_013383271.1
COORDINATES: similar to AA sequence:RefSeq:WP_013383270.1
COORDINATES: similar to AA sequence:RefSeq:WP_013544277.1
COORDINATES: similar to AA sequence:RefSeq:WP_019955055.1
COORDINATES: similar to AA sequence:RefSeq:WP_014646299.1
COORDINATES: similar to AA sequence:RefSeq:WP_013383266.1
gluconate 2-dehydrogenase subunit 3 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013383265.1
COORDINATES: similar to AA sequence:RefSeq:WP_007206666.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
putative DNA modification/repair radical SAM protein
COORDINATES: similar to AA sequence:RefSeq:WP_014538190.1
This protein belongs to the uracil DNA glycosylase superfamily, members of which act in excision repair of DNA. However, it belongs more specifically to UdgX branch, whose founding member was found to bind uracil in DNA (where it does not belong), without cleaving it, appears to promote DNA repair by a pathway involving RecA, rather than base excision; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013384212.1
COORDINATES: protein motif:HMM:NF016818.2
COORDINATES: similar to AA sequence:RefSeq:WP_013384209.1
GO:0019867 - outer membrane [Evidence IEA]
TonB-dependent hemoglobin/transferrin/lactoferrin family receptor
COORDINATES: similar to AA sequence:RefSeq:WP_013385047.1
GO:0003871 - 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005151284.1
COORDINATES: similar to AA sequence:RefSeq:WP_018063521.1
COORDINATES: similar to AA sequence:RefSeq:WP_014537467.1
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_013359961.1
COORDINATES: similar to AA sequence:RefSeq:WP_019462950.1
COORDINATES: protein motif:HMM:NF012264.2
COORDINATES: similar to AA sequence:RefSeq:WP_019955027.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019565055.1
serine hydrolase domain-containing protein
COORDINATES: protein motif:HMM:NF012581.2
proton-conducting transporter membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008235974.1
COORDINATES: similar to AA sequence:RefSeq:WP_012177407.1
COORDINATES: similar to AA sequence:RefSeq:WP_013179142.1
GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
GO:0042773 - ATP synthesis coupled electron transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019956354.1
COORDINATES: similar to AA sequence:RefSeq:WP_008235981.1
GO:0015075 - monoatomic ion transmembrane transporter activity [Evidence IEA]
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
monovalent cation/H+ antiporter complex subunit F
COORDINATES: similar to AA sequence:RefSeq:WP_019956352.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation/H(+) antiporter subunit G
COORDINATES: similar to AA sequence:RefSeq:WP_019566992.1
COORDINATES: similar to AA sequence:RefSeq:WP_012093169.1
COORDINATES: similar to AA sequence:RefSeq:WP_008890453.1
COORDINATES: similar to AA sequence:RefSeq:WP_010658988.1
COORDINATES: similar to AA sequence:RefSeq:WP_007879418.1
COORDINATES: similar to AA sequence:RefSeq:WP_012654144.1
COORDINATES: similar to AA sequence:RefSeq:WP_017700596.1
COORDINATES: similar to AA sequence:RefSeq:WP_007606113.1
COORDINATES: similar to AA sequence:RefSeq:WP_006726326.1
biotin carboxylase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014538264.1
COORDINATES: similar to AA sequence:RefSeq:WP_011983003.1
COORDINATES: similar to AA sequence:RefSeq:WP_019310330.1
COORDINATES: similar to AA sequence:RefSeq:WP_005664108.1
GO:0020037 - heme binding [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013648.2
COORDINATES: protein motif:HMM:NF013577.2
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008958153.1
COORDINATES: similar to AA sequence:RefSeq:WP_007256802.1
COORDINATES: similar to AA sequence:RefSeq:WP_014131510.1
COORDINATES: protein motif:HMM:NF018677.2
COORDINATES: similar to AA sequence:RefSeq:WP_014131504.1
COORDINATES: similar to AA sequence:RefSeq:WP_019567202.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019014486.1
COORDINATES: similar to AA sequence:RefSeq:WP_019567204.1
COORDINATES: similar to AA sequence:RefSeq:WP_003519308.1
COORDINATES: similar to AA sequence:RefSeq:WP_019567206.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_009449270.1
COORDINATES: similar to AA sequence:RefSeq:WP_007760648.1
COORDINATES: similar to AA sequence:RefSeq:WP_007760646.1
COORDINATES: similar to AA sequence:RefSeq:WP_020043698.1