Acidiphilium multivorum AIU301 plasmid pACMV7, complete sequence.
type: Entry
definition: Acidiphilium multivorum AIU301 plasmid pACMV7, complete sequence.
sequence version: NC_015189.1
sequence date: 2022-12-24
sequence: sequence
division: CON
label: NC_015189.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00060977
keyword: RefSeq
source: Acidiphilium multivorum AIU301
organism: Acidiphilium multivorum AIU301
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP012042.1.\n\n\nPlease visit our web site.\nURL:http://www.bio.nite.go.jp/\n\nDOGAN ; Database of Genomes Analyzed at NITE\nThe database contains genome sequence data, physical maps and the\ngenomic and proteomic data of the microorganisms analyzed.\nURL:http://www.bio.nite.go.jp/dogan/Top.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nGenome Coverage :: 8x\nSequencing Technology :: ABI3730\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 02:32:48\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,010\nCDSs (total) :: 3,953\nGenes (coding) :: 3,844\nCDSs (with protein) :: 3,844\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 4\nPseudo Genes (total) :: 109\nCDSs (without protein) :: 109\nPseudo Genes (ambiguous residues) :: 0 of 109\nPseudo Genes (frameshifted) :: 45 of 109\nPseudo Genes (incomplete) :: 92 of 109\nPseudo Genes (internal stop) :: 13 of 109\nPseudo Genes (multiple problems) :: 36 of 109\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 5178
topology: circular
so has quality: SO_0000988
location: 1..5178
location: region:1-5178:1
RO_0002162: 926570

NC_015189
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00060977
type: BioSample
SIO_000068: biosample

1
title: Whole genome sequence of Acidiphilium multivorum AIU301
author: Narita-Yamada, S.
author: Nakamura, S.
author: Ito, N.
author: Takarada, H.
author: Katano, Y.
author: Nakazawa, H.
author: Hosoyama, A.
author: Yamada, R.
author: Fujita, N.
journal: Unpublished

2
title: Direct Submission
author: Hosoyama, A.
author: Yamada, R.
author: Ito, N.
author: Takarada, H.
author: Narita-Yamada, S.
author: Nakamura, S.
author: Katano, Y.
author: Ichikawa, N.
author: Nakazawa, H.
author: Fujita, N.
journal: Submitted (28-DEC-2010) Contact:Director-General Department of Biotechnology National Institute of Technology and Evaluation, NITE Bioresource Information Center (NBIC), Department of Biotechnology; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066, Japan URL :http://www.bio.nite.go.jp/

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5178:1
position: 5178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5178:1:source
so part of: sequence
organism: Acidiphilium multivorum AIU301
mol type: genomic DNA
strain: AIU301
type material: type strain of Acidiphilium multivorum
plasmid: pACMV7
note: strain coidentity: NBRC 100883

100883
type: NBRC
SIO_000068: nbrc

926570
type: Taxonomy
SIO_000068: taxonomy

ACMV_RS19270
type: Gene
subclass of: SO_0000704
RO_0002162: 926570
locus tag: ACMV_RS19270
old locus tag: ACMV_P7_00010
so part of: sequence
location: 1..525
location: region:1-525:1
so has part: feature:1-525:1:exon
subclass of: SO_0000010

position:525:1
position: 525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-525:1:exon

ACMV_RS19270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 926570
locus tag: ACMV_RS19270
old locus tag: ACMV_P7_00010
inference: COORDINATES: protein motif:HMM:NF017542.2
GO process: GO:0006260 - DNA replication [Evidence IEA]; GO:0006276 - plasmid maintenance [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication/maintenance protein RepL
translation: MKQKQLGLTTEPGGTWVQVERAAMERWSKLAVSNSRAAAVMMLITSQMGRHNALVVSQATLAKMAGCGLNTLKRALGVLRDGNWIEVRQIGPTGTACAYIVNDRVAWSGNRDGIRYSLFSAAVLVSDAEQPDHSELGAQPSLESYPDHASRRAPATHWSRSRPAHPAATDGIGA
SIO_010081: ACMV_RS19270
subclass of: SO_0000673
so part of: ACMV_RS19270
location: 1..525
location: region:1-525:1
so has part: feature:1-525:1:exon

WP_013641304.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-525:1:exon

ACMV_RS21740
type: Gene
subclass of: SO_0000704
RO_0002162: 926570
locus tag: ACMV_RS21740
so part of: sequence
location: 785..976
location: region:785-976:1
so has part: feature:785-976:1:exon
subclass of: SO_0000010

position:785:1
position: 785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:976:1
position: 976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:785-976:1:exon

ACMV_RS21740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 926570
locus tag: ACMV_RS21740
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAFQAEIRMLKAQIEAKEALLSAKDRHIEDLSQALRLLAGPPAPAPQPSLLAKLFSRQRSPRS
SIO_010081: ACMV_RS21740
subclass of: SO_0000673
so part of: ACMV_RS21740
location: 785..976
location: region:785-976:1
so has part: feature:785-976:1:exon

WP_231844569.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:785-976:1:exon

ACMV_RS19280
type: Gene
subclass of: SO_0000704
RO_0002162: 926570
locus tag: ACMV_RS19280
old locus tag: ACMV_P7_00030
so part of: sequence
location: 990..1424
location: region:990-1424:1
so has part: feature:990-1424:1:exon
subclass of: SO_0000010

position:990:1
position: 990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1424:1
position: 1424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:990-1424:1:exon

ACMV_RS19280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 926570
locus tag: ACMV_RS19280
old locus tag: ACMV_P7_00030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007425147.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF29 domain-containing protein
translation: MSTSTLYDRDFYAWANEQAGLLRAGKLTQADIEHIAEEIESMGKSEKRELVSRLTILLLHLLKWQFQAPKRSKSWQNSVEVQRISLDSHLRDNPSLKSVLDSAISEAYRVARLEAENETGIDKNIFPVTCPWSFDQMMAEDFWP
SIO_010081: ACMV_RS19280
subclass of: SO_0000673
so part of: ACMV_RS19280
location: 990..1424
location: region:990-1424:1
so has part: feature:990-1424:1:exon

WP_013641306.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:990-1424:1:exon

ACMV_RS20565
type: Gene
subclass of: SO_0000704
RO_0002162: 926570
locus tag: ACMV_RS20565
old locus tag: ACMV_P7_00050
so part of: sequence
location: 1745..2326
location: region:1745-2326:1
so has part: feature:1745-2326:1:exon
subclass of: SO_0000010

position:1745:1
position: 1745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2326:1
position: 2326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1745-2326:1:exon

ACMV_RS20565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 926570
locus tag: ACMV_RS20565
old locus tag: ACMV_P7_00050
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRSAVKVVVVALCLVSLPAFAAMPPQEAALLNTLSKYNEAYDQAPNEIQQDRVSTEFARRFCAEIPQGTVHDWIGTLETILPTHHPSGVQITIELPSRDLYSGSLGIGLSVGNFYGYGVTRDGMIPSGPLLIRANTPLYHTVSKIPDNDYDRVSFSGRFVPFISPTACEKAIHYATYFDAIRFYKVRDLGPDK
SIO_010081: ACMV_RS20565
subclass of: SO_0000673
so part of: ACMV_RS20565
location: 1745..2326
location: region:1745-2326:1
so has part: feature:1745-2326:1:exon

WP_148360959.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1745-2326:1:exon

ACMV_RS19285
type: Gene
subclass of: SO_0000704
RO_0002162: 926570
locus tag: ACMV_RS19285
old locus tag: ACMV_P7_00060
so part of: sequence
location: complement(2398..3519)
location: region:2398-3519:-1
so has part: feature:2398-3519:-1:exon
subclass of: SO_0000010

position:2398:-1
position: 2398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3519:-1
position: 3519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2398-3519:-1:exon

ACMV_RS19285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 926570
locus tag: ACMV_RS19285
old locus tag: ACMV_P7_00060
inference: COORDINATES: protein motif:HMM:NF015354.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MAIYHASVKVVGRGGGRSSVAASAYRSGECLTNERDGNTHDYTKKQGVVHREIMTPENAPAWMSDRSKLWNGVEAAEKRKDAQLFRDVEIALPRELSREEQINLVRDFVKERCVDHGMVADIAVHEPRASDGEKQPHAHIMLTMRHIEGESFGNKAREWNPDFATKDGKGFVKDKSPLLGLREGWAEHINRALERAHIAERVDHRSLTVQREVALEMSQDQTRPEPERLLAERCAQDLDREPQPKLGAAAAMERRGVQTDRGDQMRAVQGRNRERQGVWQQVREWGAQALDKARDWAVELRERLAGVDLSGLRTANLSAALAGADLSVLRQANQAAERAKQPTMARRPTKEAVISRQPSRTPSKGRDGPEMDL
SIO_010081: ACMV_RS19285
subclass of: SO_0000673
so part of: ACMV_RS19285
location: complement(2398..3519)
location: region:2398-3519:-1
so has part: feature:2398-3519:-1:exon

WP_013641308.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2398-3519:-1:exon

ACMV_RS19290
type: Gene
subclass of: SO_0000704
RO_0002162: 926570
locus tag: ACMV_RS19290
old locus tag: ACMV_P7_00070
so part of: sequence
location: 3664..3951
location: region:3664-3951:1
so has part: feature:3664-3951:1:exon
subclass of: SO_0000010

position:3664:1
position: 3664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3951:1
position: 3951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3664-3951:1:exon

ACMV_RS19290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 926570
locus tag: ACMV_RS19290
old locus tag: ACMV_P7_00070
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKTIDQQIADAEARLARLREKSRKKETRHKIIVGALVLTEAAKDAKIAGWLLKQIDTKVTRDVDKTDIAPVVDDLRKVAASQNHQAASVEAAHE
SIO_010081: ACMV_RS19290
subclass of: SO_0000673
so part of: ACMV_RS19290
location: 3664..3951
location: region:3664-3951:1
so has part: feature:3664-3951:1:exon

WP_013641309.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3664-3951:1:exon

ACMV_RS21090
type: Gene
subclass of: SO_0000704
RO_0002162: 926570
locus tag: ACMV_RS21090
so part of: sequence
location: 3944..4609
location: region:3944-4609:1
so has part: feature:3944-4609:1:exon
subclass of: SO_0000010

position:3944:1
position: 3944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4609:1
position: 4609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3944-4609:1:exon

ACMV_RS21090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 926570
locus tag: ACMV_RS21090
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDPVVELVETLKAVRLEVAAIGQKIDTKAATPAQLAELSRAVKSADPAELASCIATAAVQAGQKIAREVRGETEKLSTATASLTTHDTNLDTAIKSIAATGEAIRKASFWLNFRAIMVLAVAVLLVGGGSFLSLAWQRHESASLRTEETALRAQIQTDRANLAALKAKGGNIHLSECGPKEDRLCVQVAPDQLGPNMAHAVTWHDVHKARGPQYVIVAGY
SIO_010081: ACMV_RS21090
subclass of: SO_0000673
so part of: ACMV_RS21090
location: 3944..4609
location: region:3944-4609:1
so has part: feature:3944-4609:1:exon

WP_041665967.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3944-4609:1:exon