Acidiphilium multivorum AIU301 plasmid pACMV2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.
Whole genome sequence of Acidiphilium multivorum AIU301
Submitted (28-DEC-2010) Contact:Director-General Department of Biotechnology National Institute of Technology and Evaluation, NITE Bioresource Information Center (NBIC), Department of Biotechnology; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066, Japan URL :http://www.bio.nite.go.jp/
REFSEQ INFORMATION: The reference sequence is identical to\nAP012037.1.\n\n\nPlease visit our web site.\nURL:http://www.bio.nite.go.jp/\n\nDOGAN ; Database of Genomes Analyzed at NITE\nThe database contains genome sequence data, physical maps and the\ngenomic and proteomic data of the microorganisms analyzed.\nURL:http://www.bio.nite.go.jp/dogan/Top.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nGenome Coverage :: 8x\nSequencing Technology :: ABI3730\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 02:32:48\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,010\nCDSs (total) :: 3,953\nGenes (coding) :: 3,844\nCDSs (with protein) :: 3,844\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 4\nPseudo Genes (total) :: 109\nCDSs (without protein) :: 109\nPseudo Genes (ambiguous residues) :: 0 of 109\nPseudo Genes (frameshifted) :: 45 of 109\nPseudo Genes (incomplete) :: 92 of 109\nPseudo Genes (internal stop) :: 13 of 109\nPseudo Genes (multiple problems) :: 36 of 109\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007425098.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019238166.1
COORDINATES: similar to AA sequence:RefSeq:WP_010378701.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007425100.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930781.1
COORDINATES: similar to AA sequence:RefSeq:WP_007425102.1
nuclease-related domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007424915.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007424916.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007284575.1
COORDINATES: similar to AA sequence:RefSeq:WP_017264315.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013640764.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012040331.1
COORDINATES: similar to AA sequence:RefSeq:WP_013641214.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013640761.1
COORDINATES: similar to AA sequence:RefSeq:WP_013640760.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012615690.1
GO:0050611 - arsenate reductase (azurin) activity [Evidence IEA]
arsenate reductase (azurin) small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013640758.1
arsenate reductase (azurin) large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007668916.1
GO:0004803 - transposase activity [Evidence IEA]
IS1595-like element ISAcr1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011515356.1
COORDINATES: similar to AA sequence:RefSeq:WP_009823850.1
COORDINATES: similar to AA sequence:RefSeq:WP_013640665.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930580.1
LssY C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011930812.1
COORDINATES: similar to AA sequence:RefSeq:WP_013641225.1
COORDINATES: similar to AA sequence:RefSeq:WP_013635006.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012275120.1
COORDINATES: similar to AA sequence:RefSeq:WP_008122771.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007177190.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007424952.1
COORDINATES: similar to AA sequence:RefSeq:WP_007424940.1
COORDINATES: similar to AA sequence:RefSeq:WP_007424967.1
COORDINATES: similar to AA sequence:RefSeq:WP_007425055.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930848.1
COORDINATES: similar to AA sequence:RefSeq:WP_011666579.1
COORDINATES: similar to AA sequence:RefSeq:WP_016254284.1
COORDINATES: similar to AA sequence:RefSeq:WP_011809707.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011809706.1
COORDINATES: similar to AA sequence:RefSeq:WP_014090299.1
COORDINATES: similar to AA sequence:RefSeq:WP_007425052.1
COORDINATES: similar to AA sequence:RefSeq:WP_007425051.1
COORDINATES: similar to AA sequence:RefSeq:WP_007425081.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930797.1
COORDINATES: similar to AA sequence:RefSeq:WP_007425144.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930853.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930879.1
COORDINATES: similar to AA sequence:RefSeq:WP_010337276.1
COORDINATES: similar to AA sequence:RefSeq:WP_013641251.1
COORDINATES: similar to AA sequence:RefSeq:WP_007425141.1
molybdopterin-guanine dinucleotide biosynthesis protein MobA
COORDINATES: similar to AA sequence:RefSeq:WP_014199074.1
COORDINATES: similar to AA sequence:RefSeq:WP_003630649.1
COORDINATES: similar to AA sequence:RefSeq:WP_007425047.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013641254.1
COORDINATES: similar to AA sequence:RefSeq:WP_013641255.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930793.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_013634982.1
COORDINATES: similar to AA sequence:RefSeq:WP_013641259.1
COORDINATES: similar to AA sequence:RefSeq:WP_007425094.1
COORDINATES: similar to AA sequence:RefSeq:WP_018009783.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_011930788.1
COORDINATES: protein motif:HMM:NF016820.2
COORDINATES: similar to AA sequence:RefSeq:WP_011930786.1
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF024949.2