Acidiphilium multivorum AIU301 plasmid pACMV3, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.
Whole genome sequence of Acidiphilium multivorum AIU301
Submitted (28-DEC-2010) Contact:Director-General Department of Biotechnology National Institute of Technology and Evaluation, NITE Bioresource Information Center (NBIC), Department of Biotechnology; 2-49-10 Nishihara, Shibuya-ku, Tokyo 151-0066, Japan URL :http://www.bio.nite.go.jp/
REFSEQ INFORMATION: The reference sequence is identical to\nAP012038.1.\n\n\nPlease visit our web site.\nURL:http://www.bio.nite.go.jp/\n\nDOGAN ; Database of Genomes Analyzed at NITE\nThe database contains genome sequence data, physical maps and the\ngenomic and proteomic data of the microorganisms analyzed.\nURL:http://www.bio.nite.go.jp/dogan/Top.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nGenome Coverage :: 8x\nSequencing Technology :: ABI3730\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 02:32:48\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,010\nCDSs (total) :: 3,953\nGenes (coding) :: 3,844\nCDSs (with protein) :: 3,844\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 4\nPseudo Genes (total) :: 109\nCDSs (without protein) :: 109\nPseudo Genes (ambiguous residues) :: 0 of 109\nPseudo Genes (frameshifted) :: 45 of 109\nPseudo Genes (incomplete) :: 92 of 109\nPseudo Genes (internal stop) :: 13 of 109\nPseudo Genes (multiple problems) :: 36 of 109\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011930840.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011930831.1
GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011930539.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930829.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011930828.1
COORDINATES: similar to AA sequence:RefSeq:WP_013635086.1
COORDINATES: similar to AA sequence:RefSeq:WP_013635087.1
metal/formaldehyde-sensitive transcriptional repressor
COORDINATES: similar to AA sequence:RefSeq:WP_011930825.1
COORDINATES: protein motif:HMM:NF033578.1
COORDINATES: similar to AA sequence:RefSeq:WP_008888106.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015317825.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008877880.1
COORDINATES: similar to AA sequence:RefSeq:WP_008877881.1
COORDINATES: similar to AA sequence:RefSeq:WP_015317822.1
COORDINATES: similar to AA sequence:RefSeq:WP_013066828.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008495920.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011390943.1
COORDINATES: similar to AA sequence:RefSeq:WP_009671204.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011053003.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007425016.1
COORDINATES: similar to AA sequence:RefSeq:WP_007425017.1
COORDINATES: similar to AA sequence:RefSeq:WP_007425018.1
COORDINATES: similar to AA sequence:RefSeq:WP_007425019.1
COORDINATES: similar to AA sequence:RefSeq:WP_016193176.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013635107.1
COORDINATES: similar to AA sequence:RefSeq:WP_018261390.1
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_011930757.1
GO:0008998 - ribonucleoside-triphosphate reductase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02495.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]; GO:0051353 - positive regulation of oxidoreductase activity [Evidence IEA]
anaerobic ribonucleoside-triphosphate reductase activating protein
COORDINATES: similar to AA sequence:RefSeq:WP_007668916.1
IS1595-like element ISAcr1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011930815.1
tricarballylate utilization 4Fe-4S protein TcuB
COORDINATES: similar to AA sequence:RefSeq:WP_004271514.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF033564.0
COORDINATES: similar to AA sequence:RefSeq:WP_013635119.1
SCP2 sterol-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011930752.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930753.1
GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011930754.1
COORDINATES: similar to AA sequence:RefSeq:WP_013635123.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IEA]
pyridoxal 5'-phosphate synthase lyase subunit PdxS
COORDINATES: similar to AA sequence:RefSeq:WP_011930756.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]
pyridoxal 5'-phosphate synthase glutaminase subunit PdxT
COORDINATES: similar to AA sequence:RefSeq:WP_076611116.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013634951.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013418439.1
COORDINATES: similar to AA sequence:RefSeq:WP_011930814.1
COORDINATES: similar to AA sequence:RefSeq:WP_019092710.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611246.1
COORDINATES: similar to AA sequence:RefSeq:WP_007598471.1
COORDINATES: similar to AA sequence:RefSeq:WP_014327616.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_009106271.1
COORDINATES: similar to AA sequence:RefSeq:WP_013641303.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]