Paraburkholderia tropica strain IAC135 chromosome E, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Paraburkholderia.
Sorghum Growth Promotion by Paraburkholderia tropica and Herbaspirillum frisingense: Putative Mechanisms Revealed by Genomics and Metagenomics
Submitted (17-FEB-2020) All, Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg 10, Wageningen 6708PB, Netherlands
REFSEQ INFORMATION: The reference sequence is identical to\nCP049138.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2017\nAssembly Method :: HGAP v. 2\nAssembly Name :: Pt_IAC135\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 58x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/19/2023 22:27:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,907\nCDSs (total) :: 7,814\nGenes (coding) :: 7,635\nCDSs (with protein) :: 7,635\nGenes (RNA) :: 93\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 68\nncRNAs :: 4\nPseudo Genes (total) :: 179\nCDSs (without protein) :: 179\nPseudo Genes (ambiguous residues) :: 0 of 179\nPseudo Genes (frameshifted) :: 78 of 179\nPseudo Genes (incomplete) :: 123 of 179\nPseudo Genes (internal stop) :: 17 of 179\nPseudo Genes (multiple problems) :: 31 of 179\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_076612028.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011486406.1
COORDINATES: similar to AA sequence:RefSeq:WP_015875269.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_013699891.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006399037.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014723147.1
COORDINATES: similar to AA sequence:RefSeq:WP_017453393.1
COORDINATES: similar to AA sequence:RefSeq:WP_011885050.1
COORDINATES: similar to AA sequence:RefSeq:WP_007179169.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018425170.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008917819.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012431914.1
COORDINATES: protein motif:HMM:NF022084.2
COORDINATES: similar to AA sequence:RefSeq:WP_017329278.1
COORDINATES: similar to AA sequence:RefSeq:WP_006575492.1
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012406477.1
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: similar to AA sequence:RefSeq:WP_012733612.1
filamentous hemagglutinin N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF023528.2
GO:0004540 - ribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006750649.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152391.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020656652.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012365430.1
COORDINATES: protein motif:HMM:NF024260.2
COORDINATES: similar to AA sequence:RefSeq:WP_006159539.1
catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
N-acetyl-gamma-glutamyl-phosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_017333813.1
COORDINATES: similar to AA sequence:RefSeq:WP_012734051.1
COORDINATES: similar to AA sequence:RefSeq:WP_013697224.1
type VI secretion system Vgr family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012553267.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611281.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611301.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_086558218.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_018441787.1
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: similar to AA sequence:RefSeq:WP_007580125.1
COORDINATES: similar to AA sequence:RefSeq:WP_020068189.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_013700267.1
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013094420.1
COORDINATES: similar to AA sequence:RefSeq:WP_010096224.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345313.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_013094417.1
COORDINATES: similar to AA sequence:RefSeq:WP_012367233.1
COORDINATES: protein motif:HMM:NF039495.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094717.1
COORDINATES: similar to AA sequence:RefSeq:WP_006757242.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432953.1
COORDINATES: similar to AA sequence:RefSeq:WP_006757240.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094714.1
COORDINATES: protein motif:HMM:NF012610.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012367357.1
COORDINATES: similar to AA sequence:RefSeq:WP_020202525.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_009459444.1
COORDINATES: similar to AA sequence:RefSeq:WP_011661254.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004630522.1
COORDINATES: protein motif:HMM:NF013014.2
COORDINATES: similar to AA sequence:RefSeq:WP_020071170.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012406189.1
TnsA endonuclease N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012406188.1
Mu transposase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF017437.2
COORDINATES: similar to AA sequence:RefSeq:WP_012406186.1
TnsD family Tn7-like transposition protein
COORDINATES: protein motif:HMM:TIGR00398.1
GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014192816.1
COORDINATES: similar to AA sequence:RefSeq:WP_020068382.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006397982.1
COORDINATES: similar to AA sequence:RefSeq:WP_014725038.1
COORDINATES: similar to AA sequence:RefSeq:WP_006462758.1
GO:0008800 - beta-lactamase activity [Evidence IEA]
GO:0030655 - beta-lactam antibiotic catabolic process [Evidence IEA]; GO:0046677 - response to antibiotic [Evidence IEA]
COORDINATES: protein motif:HMM:NF012970.2
COORDINATES: protein motif:HMM:NF017390.2
COORDINATES: similar to AA sequence:RefSeq:WP_020071383.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
BlaI/MecI/CopY family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014896359.1
COORDINATES: similar to AA sequence:RefSeq:WP_006386043.1
COORDINATES: similar to AA sequence:RefSeq:WP_012328997.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF019498.2
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_013699804.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218039.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003263120.1
COORDINATES: similar to AA sequence:RefSeq:WP_006749692.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_020203713.1
GO:0003867 - 4-aminobutyrate transaminase activity [Evidence IEA]
GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IEA]
4-aminobutyrate--2-oxoglutarate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_007588433.1
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020227578.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011694606.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579809.1
COORDINATES: similar to AA sequence:RefSeq:WP_013689507.1
COORDINATES: similar to AA sequence:RefSeq:WP_008917562.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017777357.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017335753.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071315.1
COORDINATES: similar to AA sequence:RefSeq:WP_011695039.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071492.1
COORDINATES: similar to AA sequence:RefSeq:WP_017453848.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012427751.1
COORDINATES: similar to AA sequence:RefSeq:WP_011880464.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071490.1
COORDINATES: similar to AA sequence:RefSeq:WP_006049118.1
COORDINATES: similar to AA sequence:RefSeq:WP_013698564.1
COORDINATES: protein motif:HMM:NF013355.2
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_011484745.1
COORDINATES: protein motif:HMM:NF015297.2
COORDINATES: similar to AA sequence:RefSeq:WP_011484744.1
COORDINATES: similar to AA sequence:RefSeq:WP_013743294.1
COORDINATES: similar to AA sequence:RefSeq:WP_017331249.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008442928.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011880682.1
COORDINATES: similar to AA sequence:RefSeq:WP_007731388.1
COORDINATES: similar to AA sequence:RefSeq:WP_007731390.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218080.1
COORDINATES: similar to AA sequence:RefSeq:WP_011885803.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700155.1
COORDINATES: protein motif:HMM:NF033542.1
COORDINATES: similar to AA sequence:RefSeq:WP_011349567.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018418295.1
COORDINATES: similar to AA sequence:RefSeq:WP_007176787.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
Members of this highly hydrophobic protein family,regularly are found preceded by the yybP-ykoY manganese riboswitch (see RF00080). A metal cation transport function is proposed.; Members of this highly hydrophobic protein family,regularly are found preceded by the yybP-ykoY manganese riboswitch (see RF00080). A metal cation transport function is proposed; Derived by automated computational analysis using gene prediction method: Protein Homology.
YjbE family putative metal transport protein
COORDINATES: similar to AA sequence:RefSeq:WP_018418293.1
COORDINATES: similar to AA sequence:RefSeq:WP_013391055.1
iron-containing redox enzyme family protein
COORDINATES: protein motif:HMM:NF024996.2
COORDINATES: similar to AA sequence:RefSeq:WP_012349348.1
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011488739.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612105.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488738.1
GO:0016787 - hydrolase activity [Evidence IEA]
alpha/beta hydrolase fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011488737.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018418286.1
COORDINATES: similar to AA sequence:RefSeq:WP_017776302.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488733.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003815416.1
COORDINATES: similar to AA sequence:RefSeq:WP_018418281.1
COORDINATES: similar to AA sequence:RefSeq:WP_007176785.1
COORDINATES: similar to AA sequence:RefSeq:WP_007176786.1
COORDINATES: similar to AA sequence:RefSeq:WP_018417693.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_020201215.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006046936.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF018984.2
CGNR zinc finger domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076612008.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007182923.1
COORDINATES: similar to AA sequence:RefSeq:WP_006752891.1
COORDINATES: protein motif:HMM:NF015799.2
COORDINATES: similar to AA sequence:RefSeq:WP_003803180.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006386744.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0033221 - ATPase-coupled urea transmembrane transporter activity [Evidence IEA]; GO:0033219 - urea binding [Evidence IEA]
GO:0015840 - urea transport [Evidence IEA]
urea ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011812575.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0033221 - ATPase-coupled urea transmembrane transporter activity [Evidence IEA]
urea ABC transporter permease subunit UrtB
COORDINATES: similar to AA sequence:RefSeq:WP_014006907.1
urea ABC transporter permease subunit UrtC
COORDINATES: similar to AA sequence:RefSeq:WP_018422824.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0033221 - ATPase-coupled urea transmembrane transporter activity [Evidence IEA]
urea ABC transporter ATP-binding protein UrtD
COORDINATES: similar to AA sequence:RefSeq:WP_010112035.1
urea ABC transporter ATP-binding subunit UrtE
COORDINATES: similar to AA sequence:RefSeq:WP_019657228.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071393.1
COORDINATES: protein motif:HMM:NF013252.2
COORDINATES: similar to AA sequence:RefSeq:WP_013697582.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193209.1
COORDINATES: similar to AA sequence:RefSeq:WP_017450382.1
COORDINATES: protein motif:HMM:NF025903.2
COORDINATES: similar to AA sequence:RefSeq:WP_013689595.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006480108.1
COORDINATES: similar to AA sequence:RefSeq:WP_006480107.1
COORDINATES: similar to AA sequence:RefSeq:WP_010122519.1
COORDINATES: similar to AA sequence:RefSeq:WP_006762800.1
COORDINATES: protein motif:HMM:NF014068.2
COORDINATES: similar to AA sequence:RefSeq:WP_018418768.1
GO:0009429 - bacterial-type flagellum basal body, proximal rod [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004185219.1
flagellar hook-basal body complex protein FliE
COORDINATES: similar to AA sequence:RefSeq:WP_012428221.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004290.1
COORDINATES: similar to AA sequence:RefSeq:WP_012339758.1
COORDINATES: protein motif:HMM:NF024967.2
COORDINATES: protein motif:HMM:NF024581.2
COORDINATES: protein motif:HMM:NF014910.2
COORDINATES: protein motif:HMM:NF013714.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013338319.1
GO:0008677 - 2-dehydropantoate 2-reductase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019938620.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00504
glycine riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF041359.1
COORDINATES: protein motif:HMM:NF014376.2
COORDINATES: similar to AA sequence:RefSeq:WP_017878477.1
COORDINATES: protein motif:HMM:NF013522.2
COORDINATES: protein motif:HMM:NF026182.2
COORDINATES: similar to AA sequence:RefSeq:WP_013699612.1
COORDINATES: similar to AA sequence:RefSeq:WP_014005855.1
GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
COORDINATES: protein motif:HMM:NF013777.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611305.1
COORDINATES: similar to AA sequence:RefSeq:WP_012351348.1
COORDINATES: protein motif:HMM:NF014566.2
CPBP family intramembrane metalloprotease
COORDINATES: protein motif:HMM:NF017206.2
COORDINATES: similar to AA sequence:RefSeq:WP_011354566.1
COORDINATES: protein motif:HMM:NF024140.2
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:NF024586.2
COORDINATES: similar to AA sequence:RefSeq:WP_017234368.1
beta-propeller fold lactonase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008923823.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190238.1
D-alanyl-D-alanine carboxypeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008342751.1
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013100.2
COORDINATES: similar to AA sequence:RefSeq:WP_013206221.1
sulfate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010092464.1
GO:0015419 - ABC-type sulfate transporter activity [Evidence IEA]
GO:0008272 - sulfate transport [Evidence IEA]
sulfate ABC transporter permease subunit CysT
COORDINATES: similar to AA sequence:RefSeq:WP_004547060.1
sulfate ABC transporter permease subunit CysW
COORDINATES: protein motif:HMM:NF014035.2
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009239173.1
COORDINATES: similar to AA sequence:RefSeq:WP_012733754.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405348.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004471.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611267.1
COORDINATES: similar to AA sequence:RefSeq:WP_008920376.1
COORDINATES: similar to AA sequence:RefSeq:WP_008920375.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405100.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071358.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012405098.1
COORDINATES: similar to AA sequence:RefSeq:WP_011493101.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024420.2
COORDINATES: similar to AA sequence:RefSeq:WP_036245303.1
COORDINATES: similar to AA sequence:RefSeq:WP_016348296.1
COORDINATES: similar to AA sequence:RefSeq:WP_014192857.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014192858.1
COORDINATES: similar to AA sequence:RefSeq:WP_017778234.1
COORDINATES: similar to AA sequence:RefSeq:WP_015877710.1
COORDINATES: similar to AA sequence:RefSeq:WP_018424942.1
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: protein motif:HMM:NF024700.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023946.2
COORDINATES: similar to AA sequence:RefSeq:WP_007967235.1
COORDINATES: similar to AA sequence:RefSeq:WP_012428293.1
COORDINATES: similar to AA sequence:RefSeq:WP_012428294.1
COORDINATES: similar to AA sequence:RefSeq:WP_015002982.1
COORDINATES: similar to AA sequence:RefSeq:WP_015002983.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481275.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488779.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488780.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488782.1
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011488783.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488784.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488785.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488786.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011488787.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488788.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488789.1
GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011488790.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011488791.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488792.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011488793.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488794.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_012428310.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488796.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488797.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488798.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_012428315.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_011488800.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488801.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012428318.1
COORDINATES: similar to AA sequence:RefSeq:WP_011487993.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488803.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488804.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488805.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488806.1
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011488807.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558259.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011488809.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488810.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488811.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011488812.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011488813.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013699030.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018422818.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488819.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_011488821.1
COORDINATES: similar to AA sequence:RefSeq:WP_007884547.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488823.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488826.1
COORDINATES: similar to AA sequence:RefSeq:WP_016834185.1
COORDINATES: similar to AA sequence:RefSeq:WP_017777826.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488830.1
GO:0004061 - arylformamidase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]
COORDINATES: protein motif:HMM:NF012506.2
COORDINATES: similar to AA sequence:RefSeq:WP_011488832.1
acyclic terpene utilization AtuA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011488833.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488834.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488835.1
COORDINATES: similar to AA sequence:RefSeq:WP_011694489.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013094258.1
COORDINATES: similar to AA sequence:RefSeq:WP_013093094.1
COORDINATES: protein motif:HMM:NF024039.2
COORDINATES: similar to AA sequence:RefSeq:WP_006405471.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008163644.1
COORDINATES: similar to AA sequence:RefSeq:WP_013093095.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_015001934.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611481.1
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006396871.1
COORDINATES: similar to AA sequence:RefSeq:WP_019936566.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488840.1
COORDINATES: similar to AA sequence:RefSeq:WP_011488841.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012428353.1
COORDINATES: protein motif:HMM:NF015563.2
COORDINATES: similar to AA sequence:RefSeq:WP_011491930.1
COORDINATES: similar to AA sequence:RefSeq:WP_008346734.1
COORDINATES: similar to AA sequence:RefSeq:WP_012404061.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432788.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611359.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498550.1
COORDINATES: similar to AA sequence:RefSeq:WP_009967109.1
COORDINATES: similar to AA sequence:RefSeq:WP_004522091.1
COORDINATES: similar to AA sequence:RefSeq:WP_006759516.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545774.1
COORDINATES: similar to AA sequence:RefSeq:WP_006047184.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006759513.1
COORDINATES: similar to AA sequence:RefSeq:WP_006759512.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612348.1
COORDINATES: similar to AA sequence:RefSeq:WP_015878093.1
HAMP domain-containing sensor histidine kinase
cyclic nucleotide-binding domain-containing protein
bifunctional diguanylate cyclase/phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_006762421.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700091.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182917.1
COORDINATES: similar to AA sequence:RefSeq:WP_047215127.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611313.1
COORDINATES: similar to AA sequence:RefSeq:WP_000830285.1
COORDINATES: similar to AA sequence:RefSeq:WP_011004412.1
COORDINATES: similar to AA sequence:RefSeq:WP_011879998.1
COORDINATES: similar to AA sequence:RefSeq:WP_013343496.1
COORDINATES: similar to AA sequence:RefSeq:WP_014619202.1
COORDINATES: similar to AA sequence:RefSeq:WP_006757530.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344518.1
COORDINATES: similar to AA sequence:RefSeq:WP_014252944.1
GO:0005515 - protein binding [Evidence IEA]
SET domain-containing protein-lysine N-methyltransferase
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_011493957.1
COORDINATES: similar to AA sequence:RefSeq:WP_008447323.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427681.1
COORDINATES: protein motif:HMM:NF012334.2
COORDINATES: similar to AA sequence:RefSeq:WP_017235525.1
COORDINATES: similar to AA sequence:RefSeq:WP_006760673.1
COORDINATES: similar to AA sequence:RefSeq:WP_011001645.1
COORDINATES: similar to AA sequence:RefSeq:WP_017424861.1
COORDINATES: similar to AA sequence:RefSeq:WP_006757403.1
COORDINATES: similar to AA sequence:RefSeq:WP_012366571.1
COORDINATES: similar to AA sequence:RefSeq:WP_017774490.1
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: similar to AA sequence:RefSeq:WP_013521066.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018434125.1
COORDINATES: similar to AA sequence:RefSeq:WP_001536669.1
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_008917433.1
COORDINATES: similar to AA sequence:RefSeq:WP_012404501.1
phosphatidylserine decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012434043.1
COORDINATES: similar to AA sequence:RefSeq:WP_015875529.1
COORDINATES: similar to AA sequence:RefSeq:WP_020066609.1
COORDINATES: similar to AA sequence:RefSeq:WP_014972069.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
thiamine pyrophosphate-requiring protein
COORDINATES: similar to AA sequence:RefSeq:WP_018422261.1
COORDINATES: similar to AA sequence:RefSeq:WP_017777657.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007588739.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732928.1
COORDINATES: similar to AA sequence:RefSeq:WP_017775002.1
COORDINATES: similar to AA sequence:RefSeq:WP_006767018.1