Tachyglossus aculeatus isolate mTacAcu1 chromosome Y2, mTacAcu1.pri, whole genome shotgun sequence.
type: Entry
definition: Tachyglossus aculeatus isolate mTacAcu1 chromosome Y2, mTacAcu1.pri, whole genome shotgun sequence.
sequence version: NC_052094.1
sequence date: 2021-01-06
sequence: sequence
division: CON
label: NC_052094.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA687514
dblink: SAMN12634963
keyword: WGS
keyword: RefSeq
source: Tachyglossus aculeatus (Australian echidna)
organism: Tachyglossus aculeatus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Tachyglossidae; Tachyglossus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM027628.1.\nAssembly name: mTacAcu1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2020/12/09. The original whole-genome shotgun project has the\naccession JADRJE000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 26-OCT-2020\nAssembly Method :: FALCON v. falcon-2018.31.08-03.06;\n FALCON-Unzip v. 6.0.0.47841; purge_dups\n v. github\n ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b\n ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b;\n Scaff10x v. 4.1.0; Bionano Solve v.\n 3.2.1_04122018; Salsa2 HiC v. 2.2; Polish\n pbgcpp v. 1.9.0; Longranger Align v.\n 2.2.2; freebayes v. 1.3.1; gEVAL manual\n curation v. 2020-09-17; Manual Curation\n v. 2020-10-26; VGP assembly pipeline v.\n 1.6\nAssembly Name :: mTacAcu1.pri\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 58.29x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Bionano Genomics DLS; Phase Genomics\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Tachyglossus aculeatus Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.5\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 5498064
topology: linear
so has quality: SO_0000987
location: 1..5498064
location: region:1-5498064:1
RO_0002162: 9261

NC_052094
type: RefSeq
SIO_000068: refseq

PRJNA687514
type: BioProject
SIO_000068: bioproject

SAMN12634963
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5498064:1
position: 5498064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5498064:1:source
so part of: sequence
organism: Tachyglossus aculeatus
mol type: genomic DNA
isolate: mTacAcu1
chromosome: Y2
sex: male
tissue type: liver
dev stage: adult
country: Australia: Upper Barnard River, New South Wales
lat lon: 31.647305 S 151.500011 E
collected by: Tasman Daish, Frank Grutzner

9261
type: Taxonomy
SIO_000068: taxonomy

LOC119946692
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946692
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4670..10069
location: region:4670-10069:1
so has part: feature:4670-10069:1:exon
subclass of: SO_0000011

119946692
type: Gene
SIO_000068: ncbigene

position:4670:1
position: 4670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10069:1
position: 10069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4670-10069:1:exon

LOC119946692
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9261
nc RNA class: lncRNA
gene: LOC119946692
product: uncharacterized LOC119946692, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_005456456.1
SIO_010081: LOC119946692
subclass of: SO_0000673
so part of: LOC119946692
location: join(4670..4765,4910..5009,6335..6480,7927..8033,9739..10069)
location: region:4670-10069:1
so has part: feature:4670-4765:1:exon
so has part: feature:4910-5009:1:exon
so has part: feature:6335-6480:1:exon
so has part: feature:7927-8033:1:exon
so has part: feature:9739-10069:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4670-4765:1:exon

position:4765:1
position: 4765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4910-5009:1:exon

position:4910:1
position: 4910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5009:1
position: 5009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6335-6480:1:exon

position:6335:1
position: 6335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6480:1
position: 6480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:7927-8033:1:exon

position:7927:1
position: 7927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8033:1
position: 8033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:9739-10069:1:exon

position:9739:1
position: 9739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC119946692
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9261
nc RNA class: lncRNA
gene: LOC119946692
product: uncharacterized LOC119946692, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_005456455.1
SIO_010081: LOC119946692
subclass of: SO_0000673
so part of: LOC119946692
location: join(4861..5009,6335..6480,7927..8033,9739..10069)
location: region:4861-10069:1
so has part: feature:4861-5009:1:exon
so has part: feature:6335-6480:1:exon
so has part: feature:7927-8033:1:exon
so has part: feature:9739-10069:1:exon

position:4861:1
position: 4861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4861-5009:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6335-6480:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7927-8033:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9739-10069:1:exon

PHACTR1
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: PHACTR1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 203886..524770
location: region:203886-524770:1
so has part: feature:203886-524770:1:exon
subclass of: SO_0000010

119946654
type: Gene
SIO_000068: ncbigene

position:203886:1
position: 203886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:524770:1
position: 524770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:203886-524770:1:exon

PHACTR1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: PHACTR1
product: phosphatase and actin regulator 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_038768071.1
SIO_010081: PHACTR1
subclass of: SO_0000673
so part of: PHACTR1
location: join(203886..204258,205999..206132,227780..227926,429892..430050,449414..449494,459564..459731,461960..462166,478725..479049,489303..489547,490489..490645,509100..509155,513736..513797,518599..518739,522100..522176,523338..524770)
location: region:203886-524770:1
so has part: feature:203886-204258:1:exon
so has part: feature:205999-206132:1:exon
so has part: feature:227780-227926:1:exon
so has part: feature:429892-430050:1:exon
so has part: feature:449414-449494:1:exon
so has part: feature:459564-459731:1:exon
so has part: feature:461960-462166:1:exon
so has part: feature:478725-479049:1:exon
so has part: feature:489303-489547:1:exon
so has part: feature:490489-490645:1:exon
so has part: feature:509100-509155:1:exon
so has part: feature:513736-513797:1:exon
so has part: feature:518599-518739:1:exon
so has part: feature:522100-522176:1:exon
so has part: feature:523338-524770:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:203886-204258:1:exon

position:204258:1
position: 204258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:205999-206132:1:exon

position:205999:1
position: 205999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:206132:1
position: 206132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:227780-227926:1:exon

position:227780:1
position: 227780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:227926:1
position: 227926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:429892-430050:1:exon

position:429892:1
position: 429892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:430050:1
position: 430050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:449414-449494:1:exon

position:449414:1
position: 449414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:449494:1
position: 449494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:459564-459731:1:exon

position:459564:1
position: 459564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:459731:1
position: 459731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:461960-462166:1:exon

position:461960:1
position: 461960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:462166:1
position: 462166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:478725-479049:1:exon

position:478725:1
position: 478725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:479049:1
position: 479049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:489303-489547:1:exon

position:489303:1
position: 489303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:489547:1
position: 489547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:490489-490645:1:exon

position:490489:1
position: 490489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:490645:1
position: 490645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:509100-509155:1:exon

position:509100:1
position: 509100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:509155:1
position: 509155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:513736-513797:1:exon

position:513736:1
position: 513736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:513797:1
position: 513797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:518599-518739:1:exon

position:518599:1
position: 518599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:518739:1
position: 518739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:522100-522176:1:exon

position:522100:1
position: 522100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:522176:1
position: 522176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:523338-524770:1:exon

position:523338:1
position: 523338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PHACTR1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: PHACTR1
product: phosphatase and actin regulator 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_038768074.1
SIO_010081: PHACTR1
subclass of: SO_0000673
so part of: PHACTR1
location: join(203888..204258,205999..206132,227780..227926,429892..430050,449414..449494,459564..459731,478725..479049,489303..489547,490489..490645,509100..509155,513736..513797,518599..518739,522100..522176,523338..524770)
location: region:203888-524770:1
so has part: feature:203888-204258:1:exon
so has part: feature:205999-206132:1:exon
so has part: feature:227780-227926:1:exon
so has part: feature:429892-430050:1:exon
so has part: feature:449414-449494:1:exon
so has part: feature:459564-459731:1:exon
so has part: feature:478725-479049:1:exon
so has part: feature:489303-489547:1:exon
so has part: feature:490489-490645:1:exon
so has part: feature:509100-509155:1:exon
so has part: feature:513736-513797:1:exon
so has part: feature:518599-518739:1:exon
so has part: feature:522100-522176:1:exon
so has part: feature:523338-524770:1:exon

position:203888:1
position: 203888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:203888-204258:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:205999-206132:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:227780-227926:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:429892-430050:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:449414-449494:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:459564-459731:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:478725-479049:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:489303-489547:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:490489-490645:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:509100-509155:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:513736-513797:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:518599-518739:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:522100-522176:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:523338-524770:1:exon

PHACTR1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: PHACTR1
product: phosphatase and actin regulator 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_038768072.1
SIO_010081: PHACTR1
subclass of: SO_0000673
so part of: PHACTR1
location: join(204986..205072,205999..206132,227780..227926,429892..430050,449414..449494,459564..459731,461960..462166,478725..479049,489303..489547,490489..490645,509100..509155,513736..513797,518599..518739,522100..522176,523338..524770)
location: region:204986-524770:1
so has part: feature:204986-205072:1:exon
so has part: feature:205999-206132:1:exon
so has part: feature:227780-227926:1:exon
so has part: feature:429892-430050:1:exon
so has part: feature:449414-449494:1:exon
so has part: feature:459564-459731:1:exon
so has part: feature:461960-462166:1:exon
so has part: feature:478725-479049:1:exon
so has part: feature:489303-489547:1:exon
so has part: feature:490489-490645:1:exon
so has part: feature:509100-509155:1:exon
so has part: feature:513736-513797:1:exon
so has part: feature:518599-518739:1:exon
so has part: feature:522100-522176:1:exon
so has part: feature:523338-524770:1:exon

position:204986:1
position: 204986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:204986-205072:1:exon

position:205072:1
position: 205072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:205999-206132:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:227780-227926:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:429892-430050:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:449414-449494:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:459564-459731:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:461960-462166:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:478725-479049:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:489303-489547:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:490489-490645:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:509100-509155:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:513736-513797:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:518599-518739:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:522100-522176:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:523338-524770:1:exon

PHACTR1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: PHACTR1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatase and actin regulator 1 isoform X1
translation: MDYPKMDYFLDVESAHRLFYSQGAQARRATLLLPPTLMATSSEEDIDRRPIRRVRSKSDTPYLAEARISFNLGAAEEVERLAAMHSLVPGTHTPPIRRKSKFANLGRIFKPWKWRKKKSEKFNHTSTALERKISMRQSREELIKRGVLKEIYDKDGELSGLSGEGSLENGQALSTSQLSLPALSEMEPVPMPRDPCSYEVLQPSDIMDGAVSEESPSANEPGALLSQDPSAKPVLLLPPKKPVACPRDHDDNSVELLSLFKQPPALPPKLITRIPNHLTDPSAPVKLPCLPVKLSPPLPPKKVMICMPLGGPDLSLASYAQPKSIQQPLSQQHHHTVLPSQLQHQLQYGSLGHHHPSASGSLPMHPSGCRMIDELNKTLAMTMQRLESSDQRGPCPSYHSSGLHSSDGVTKTGPVGLPDLRQVPTVVIECDDNKENVPHESDYEDSSCLYTQEEEDEDEDEDDDGSIYTSSLAMRVCRKDSLAIKLSNRPSKRELEEKNILPRQTDEERLELRQQIGTKLTRRLSQRPTAEELEQRNILKPRNEQEEQEEKREIRRRLTRKLSQRPTVEELRERKILIRFSDYVEVADAQDYDRRADKPWTRLTAADKAAIRKELNEFKSTEMEVHELSRHLTRFHRP
SIO_010081: PHACTR1
subclass of: SO_0000673
so part of: PHACTR1
location: join(206057..206132,227780..227926,429892..430050,449414..449494,459564..459731,461960..462166,478725..479049,489303..489547,490489..490645,509100..509155,513736..513797,518599..518739,522100..522176,523338..523353)
location: region:206057-523353:1
so has part: feature:206057-206132:1:exon
so has part: feature:227780-227926:1:exon
so has part: feature:429892-430050:1:exon
so has part: feature:449414-449494:1:exon
so has part: feature:459564-459731:1:exon
so has part: feature:461960-462166:1:exon
so has part: feature:478725-479049:1:exon
so has part: feature:489303-489547:1:exon
so has part: feature:490489-490645:1:exon
so has part: feature:509100-509155:1:exon
so has part: feature:513736-513797:1:exon
so has part: feature:518599-518739:1:exon
so has part: feature:522100-522176:1:exon
so has part: feature:523338-523353:1:exon

XP_038623999.1
type: Protein
SIO_000068: ncbiprotein

position:206057:1
position: 206057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:523353:1
position: 523353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:206057-206132:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:227780-227926:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:429892-430050:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:449414-449494:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:459564-459731:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:461960-462166:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:478725-479049:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:489303-489547:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:490489-490645:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:509100-509155:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:513736-513797:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:518599-518739:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:522100-522176:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:523338-523353:1:exon

PHACTR1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: PHACTR1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatase and actin regulator 1 isoform X1
translation: MDYPKMDYFLDVESAHRLFYSQGAQARRATLLLPPTLMATSSEEDIDRRPIRRVRSKSDTPYLAEARISFNLGAAEEVERLAAMHSLVPGTHTPPIRRKSKFANLGRIFKPWKWRKKKSEKFNHTSTALERKISMRQSREELIKRGVLKEIYDKDGELSGLSGEGSLENGQALSTSQLSLPALSEMEPVPMPRDPCSYEVLQPSDIMDGAVSEESPSANEPGALLSQDPSAKPVLLLPPKKPVACPRDHDDNSVELLSLFKQPPALPPKLITRIPNHLTDPSAPVKLPCLPVKLSPPLPPKKVMICMPLGGPDLSLASYAQPKSIQQPLSQQHHHTVLPSQLQHQLQYGSLGHHHPSASGSLPMHPSGCRMIDELNKTLAMTMQRLESSDQRGPCPSYHSSGLHSSDGVTKTGPVGLPDLRQVPTVVIECDDNKENVPHESDYEDSSCLYTQEEEDEDEDEDDDGSIYTSSLAMRVCRKDSLAIKLSNRPSKRELEEKNILPRQTDEERLELRQQIGTKLTRRLSQRPTAEELEQRNILKPRNEQEEQEEKREIRRRLTRKLSQRPTVEELRERKILIRFSDYVEVADAQDYDRRADKPWTRLTAADKAAIRKELNEFKSTEMEVHELSRHLTRFHRP
SIO_010081: PHACTR1
subclass of: SO_0000673
so part of: PHACTR1
location: join(206057..206132,227780..227926,429892..430050,449414..449494,459564..459731,461960..462166,478725..479049,489303..489547,490489..490645,509100..509155,513736..513797,518599..518739,522100..522176,523338..523353)
location: region:206057-523353:1
so has part: feature:206057-206132:1:exon
so has part: feature:227780-227926:1:exon
so has part: feature:429892-430050:1:exon
so has part: feature:449414-449494:1:exon
so has part: feature:459564-459731:1:exon
so has part: feature:461960-462166:1:exon
so has part: feature:478725-479049:1:exon
so has part: feature:489303-489547:1:exon
so has part: feature:490489-490645:1:exon
so has part: feature:509100-509155:1:exon
so has part: feature:513736-513797:1:exon
so has part: feature:518599-518739:1:exon
so has part: feature:522100-522176:1:exon
so has part: feature:523338-523353:1:exon

XP_038624000.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:206057-206132:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:227780-227926:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:429892-430050:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:449414-449494:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:459564-459731:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:461960-462166:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:478725-479049:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:489303-489547:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:490489-490645:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:509100-509155:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:513736-513797:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:518599-518739:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:522100-522176:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:523338-523353:1:exon

PHACTR1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: PHACTR1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatase and actin regulator 1 isoform X3
translation: MDYPKMDYFLDVESAHRLFYSQGAQARRATLLLPPTLMATSSEEDIDRRPIRRVRSKSDTPYLAEARISFNLGAAEEVERLAAMHSLVPGTHTPPIRRKSKFANLGRIFKPWKWRKKKSEKFNHTSTALERKISMRQSREELIKRGVLKEIYDKDGELSGLSGEGSLENGQALSTSQLSLPALSEMEPVPMPRDPCSYEVLQPSDIMDGADPSAPVKLPCLPVKLSPPLPPKKVMICMPLGGPDLSLASYAQPKSIQQPLSQQHHHTVLPSQLQHQLQYGSLGHHHPSASGSLPMHPSGCRMIDELNKTLAMTMQRLESSDQRGPCPSYHSSGLHSSDGVTKTGPVGLPDLRQVPTVVIECDDNKENVPHESDYEDSSCLYTQEEEDEDEDEDDDGSIYTSSLAMRVCRKDSLAIKLSNRPSKRELEEKNILPRQTDEERLELRQQIGTKLTRRLSQRPTAEELEQRNILKPRNEQEEQEEKREIRRRLTRKLSQRPTVEELRERKILIRFSDYVEVADAQDYDRRADKPWTRLTAADKAAIRKELNEFKSTEMEVHELSRHLTRFHRP
SIO_010081: PHACTR1
subclass of: SO_0000673
so part of: PHACTR1
location: join(206057..206132,227780..227926,429892..430050,449414..449494,459564..459731,478725..479049,489303..489547,490489..490645,509100..509155,513736..513797,518599..518739,522100..522176,523338..523353)
location: region:206057-523353:1
so has part: feature:206057-206132:1:exon
so has part: feature:227780-227926:1:exon
so has part: feature:429892-430050:1:exon
so has part: feature:449414-449494:1:exon
so has part: feature:459564-459731:1:exon
so has part: feature:478725-479049:1:exon
so has part: feature:489303-489547:1:exon
so has part: feature:490489-490645:1:exon
so has part: feature:509100-509155:1:exon
so has part: feature:513736-513797:1:exon
so has part: feature:518599-518739:1:exon
so has part: feature:522100-522176:1:exon
so has part: feature:523338-523353:1:exon

XP_038624002.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:206057-206132:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:227780-227926:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:429892-430050:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:449414-449494:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:459564-459731:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:478725-479049:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:489303-489547:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:490489-490645:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:509100-509155:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:513736-513797:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:518599-518739:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:522100-522176:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:523338-523353:1:exon

PHACTR1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: PHACTR1
product: phosphatase and actin regulator 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_038768073.1
SIO_010081: PHACTR1
subclass of: SO_0000673
so part of: PHACTR1
location: join(395688..395746,429892..430050,449414..449494,459564..459731,461960..462166,478725..479049,489303..489547,490489..490645,509100..509155,513736..513797,518599..518739,522100..522176,523338..524770)
location: region:395688-524770:1
so has part: feature:395688-395746:1:exon
so has part: feature:429892-430050:1:exon
so has part: feature:449414-449494:1:exon
so has part: feature:459564-459731:1:exon
so has part: feature:461960-462166:1:exon
so has part: feature:478725-479049:1:exon
so has part: feature:489303-489547:1:exon
so has part: feature:490489-490645:1:exon
so has part: feature:509100-509155:1:exon
so has part: feature:513736-513797:1:exon
so has part: feature:518599-518739:1:exon
so has part: feature:522100-522176:1:exon
so has part: feature:523338-524770:1:exon

position:395688:1
position: 395688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:395688-395746:1:exon

position:395746:1
position: 395746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:429892-430050:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:449414-449494:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:459564-459731:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:461960-462166:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:478725-479049:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:489303-489547:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:490489-490645:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:509100-509155:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:513736-513797:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:518599-518739:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:522100-522176:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:523338-524770:1:exon

PHACTR1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: PHACTR1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatase and actin regulator 1 isoform X2
translation: MHVARKAEEVERLAAMHSLVPGTHTPPIRRKSKFANLGRIFKPWKWRKKKSEKFNHTSTALERKISMRQSREELIKRGVLKEIYDKDGELSGLSGEGSLENGQALSTSQLSLPALSEMEPVPMPRDPCSYEVLQPSDIMDGAVSEESPSANEPGALLSQDPSAKPVLLLPPKKPVACPRDHDDNSVELLSLFKQPPALPPKLITRIPNHLTDPSAPVKLPCLPVKLSPPLPPKKVMICMPLGGPDLSLASYAQPKSIQQPLSQQHHHTVLPSQLQHQLQYGSLGHHHPSASGSLPMHPSGCRMIDELNKTLAMTMQRLESSDQRGPCPSYHSSGLHSSDGVTKTGPVGLPDLRQVPTVVIECDDNKENVPHESDYEDSSCLYTQEEEDEDEDEDDDGSIYTSSLAMRVCRKDSLAIKLSNRPSKRELEEKNILPRQTDEERLELRQQIGTKLTRRLSQRPTAEELEQRNILKPRNEQEEQEEKREIRRRLTRKLSQRPTVEELRERKILIRFSDYVEVADAQDYDRRADKPWTRLTAADKAAIRKELNEFKSTEMEVHELSRHLTRFHRP
SIO_010081: PHACTR1
subclass of: SO_0000673
so part of: PHACTR1
location: join(395728..395746,429892..430050,449414..449494,459564..459731,461960..462166,478725..479049,489303..489547,490489..490645,509100..509155,513736..513797,518599..518739,522100..522176,523338..523353)
location: region:395728-523353:1
so has part: feature:395728-395746:1:exon
so has part: feature:429892-430050:1:exon
so has part: feature:449414-449494:1:exon
so has part: feature:459564-459731:1:exon
so has part: feature:461960-462166:1:exon
so has part: feature:478725-479049:1:exon
so has part: feature:489303-489547:1:exon
so has part: feature:490489-490645:1:exon
so has part: feature:509100-509155:1:exon
so has part: feature:513736-513797:1:exon
so has part: feature:518599-518739:1:exon
so has part: feature:522100-522176:1:exon
so has part: feature:523338-523353:1:exon

XP_038624001.1
type: Protein
SIO_000068: ncbiprotein

position:395728:1
position: 395728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:395728-395746:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:429892-430050:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:449414-449494:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:459564-459731:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:461960-462166:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:478725-479049:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:489303-489547:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:490489-490645:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:509100-509155:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:513736-513797:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:518599-518739:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:522100-522176:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:523338-523353:1:exon

LOC119946657
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946657
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(522218..532422)
location: region:522218-532422:-1
so has part: feature:522218-532422:-1:exon
subclass of: SO_0000011

119946657
type: Gene
SIO_000068: ncbigene

position:522218:-1
position: 522218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:532422:-1
position: 532422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:522218-532422:-1:exon

LOC119946657
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9261
nc RNA class: lncRNA
gene: LOC119946657
product: uncharacterized LOC119946657
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_005456450.1
SIO_010081: LOC119946657
subclass of: SO_0000673
so part of: LOC119946657
location: complement(join(522218..522312,524657..524741,525869..526106,528959..529070,532199..532422))
location: region:522218-532422:-1
so has part: feature:532199-532422:-1:exon
so has part: feature:528959-529070:-1:exon
so has part: feature:525869-526106:-1:exon
so has part: feature:524657-524741:-1:exon
so has part: feature:522218-522312:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:532199-532422:-1:exon

position:532199:-1
position: 532199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:528959-529070:-1:exon

position:528959:-1
position: 528959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:529070:-1
position: 529070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:525869-526106:-1:exon

position:525869:-1
position: 525869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:526106:-1
position: 526106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:524657-524741:-1:exon

position:524657:-1
position: 524657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:524741:-1
position: 524741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:522218-522312:-1:exon

position:522312:-1
position: 522312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TBC1D7
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: TBC1D7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(534355..548038)
location: region:534355-548038:-1
so has part: feature:534355-548038:-1:exon
subclass of: SO_0000010

119946655
type: Gene
SIO_000068: ncbigene

position:534355:-1
position: 534355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:548038:-1
position: 548038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:534355-548038:-1:exon

TBC1D7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: TBC1D7
product: TBC1 domain family member 7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038768075.1
SIO_010081: TBC1D7
subclass of: SO_0000673
so part of: TBC1D7
location: complement(join(534355..534606,535434..535563,537311..537456,538187..538188,538539..538674,542147..542334,546619..546699,547927..548038))
location: region:534355-548038:-1
so has part: feature:547927-548038:-1:exon
so has part: feature:546619-546699:-1:exon
so has part: feature:542147-542334:-1:exon
so has part: feature:538539-538674:-1:exon
so has part: feature:538187-538188:-1:exon
so has part: feature:537311-537456:-1:exon
so has part: feature:535434-535563:-1:exon
so has part: feature:534355-534606:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:547927-548038:-1:exon

position:547927:-1
position: 547927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:546619-546699:-1:exon

position:546619:-1
position: 546619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:546699:-1
position: 546699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:542147-542334:-1:exon

position:542147:-1
position: 542147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:542334:-1
position: 542334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:538539-538674:-1:exon

position:538539:-1
position: 538539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:538674:-1
position: 538674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:538187-538188:-1:exon

position:538187:-1
position: 538187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:538188:-1
position: 538188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:537311-537456:-1:exon

position:537311:-1
position: 537311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:537456:-1
position: 537456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:535434-535563:-1:exon

position:535434:-1
position: 535434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:535563:-1
position: 535563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:534355-534606:-1:exon

position:534606:-1
position: 534606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TBC1D7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: TBC1D7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: TBC1 domain family member 7
translation: MAEDCQRNFPSIYYEKVGFRGVEEKRSLEILLKDDQLDIEKLCTFSQWFPLPSMYQALVWKVLLGILPPHHESHSQVMAYRREQYMEVLHALEVLRFVNDSTSQGDVYLRMYQLDSGKLPRNPNFPLEQEDEIFLAIAKAMEEIVEDNVDCYWLIRYFVNQLNSKFWDTLPYLPKAFERYLNLEDSRLLSHLKSFSVVTKLPYDLWFQKCFARCLPETSLQRIWDKVISGSCKILVFVAVEILLTFKIKVMALNNAEKITEFLENIPQDSSDAIVSKAIDLWHKHCGAPVHSA
SIO_010081: TBC1D7
subclass of: SO_0000673
so part of: TBC1D7
location: complement(join(534520..534606,535434..535563,537311..537456,538187..538188,538539..538674,542147..542334,546619..546699,547927..548038))
location: region:534520-548038:-1
so has part: feature:547927-548038:-1:exon
so has part: feature:546619-546699:-1:exon
so has part: feature:542147-542334:-1:exon
so has part: feature:538539-538674:-1:exon
so has part: feature:538187-538188:-1:exon
so has part: feature:537311-537456:-1:exon
so has part: feature:535434-535563:-1:exon
so has part: feature:534520-534606:-1:exon

XP_038624003.1
type: Protein
SIO_000068: ncbiprotein

position:534520:-1
position: 534520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:547927-548038:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:546619-546699:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:542147-542334:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:538539-538674:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:538187-538188:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:537311-537456:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:535434-535563:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:534520-534606:-1:exon

GFOD1
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: GFOD1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(576142..676860)
location: region:576142-676860:-1
so has part: feature:576142-676860:-1:exon
subclass of: SO_0000010

119946695
type: Gene
SIO_000068: ncbigene

position:576142:-1
position: 576142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:676860:-1
position: 676860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:576142-676860:-1:exon

GFOD1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: GFOD1
product: glucose-fructose oxidoreductase domain containing 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_038768111.1
SIO_010081: GFOD1
subclass of: SO_0000673
so part of: GFOD1
location: complement(join(576142..579061,662523..662644,676778..676860))
location: region:576142-676860:-1
so has part: feature:676778-676860:-1:exon
so has part: feature:662523-662644:-1:exon
so has part: feature:576142-579061:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:676778-676860:-1:exon

position:676778:-1
position: 676778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:662523-662644:-1:exon

position:662523:-1
position: 662523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:662644:-1
position: 662644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:576142-579061:-1:exon

position:579061:-1
position: 579061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

GFOD1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: GFOD1
product: glucose-fructose oxidoreductase domain containing 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_038768110.1
SIO_010081: GFOD1
subclass of: SO_0000673
so part of: GFOD1
location: complement(join(576142..579061,647608..647860))
location: region:576142-647860:-1
so has part: feature:647608-647860:-1:exon
so has part: feature:576142-579061:-1:exon

position:647860:-1
position: 647860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:647608-647860:-1:exon

position:647608:-1
position: 647608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:576142-579061:-1:exon

GFOD1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: GFOD1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glucose-fructose oxidoreductase domain-containing protein 1 isoform X2
translation: MKSNVWFPPSLRSSIGKNVICDRTATPLDAFRMMSAAHYYPKLMSIMGNVLRFLPSFVRMKQLIEEGYVGELLVCEVQVHGRSLLGKKYNWSCDHLMGAGGLHSVGTYIIDLLTFLTGQKAVKVHGLLKTFVKQTAHIQGIRQITSNDFCTFQMVLEQGGCCTVTLNFNVPGEFKQDVAVVGSAGRLLAAGTDLFGQRNGAPGQELLLQDSAPLSNSLLPEKAFSDIPSPYLRGTVRMMQAVGQAFQGQDDRRTWDGRPLTMAATFDDCLYALCVVDTIKRSSHMGEWQNITVMTEEQELSPAYLISEAMRHSRMSLYC
SIO_010081: GFOD1
subclass of: SO_0000673
so part of: GFOD1
location: complement(join(578142..579061,662523..662562))
location: region:578142-662562:-1
so has part: feature:662523-662562:-1:exon
so has part: feature:578142-579061:-1:exon

XP_038624039.1
type: Protein
SIO_000068: ncbiprotein

position:578142:-1
position: 578142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:662562:-1
position: 662562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:662523-662562:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:578142-579061:-1:exon

GFOD1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: GFOD1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glucose-fructose oxidoreductase domain-containing protein 1 isoform X1
translation: MLPGVGVFGTGLTARVMIPLLRAEGFSVEALWGGTADEAAQLAAELAVPFHTCRIDDLLLHHGVHLVCIHLPPPLTRQIAVKTLGIGKNVICDRTATPLDAFRMMSAAHYYPKLMSIMGNVLRFLPSFVRMKQLIEEGYVGELLVCEVQVHGRSLLGKKYNWSCDHLMGAGGLHSVGTYIIDLLTFLTGQKAVKVHGLLKTFVKQTAHIQGIRQITSNDFCTFQMVLEQGGCCTVTLNFNVPGEFKQDVAVVGSAGRLLAAGTDLFGQRNGAPGQELLLQDSAPLSNSLLPEKAFSDIPSPYLRGTVRMMQAVGQAFQGQDDRRTWDGRPLTMAATFDDCLYALCVVDTIKRSSHMGEWQNITVMTEEQELSPAYLISEAMRHSRMSLYC
SIO_010081: GFOD1
subclass of: SO_0000673
so part of: GFOD1
location: complement(join(578142..579061,647608..647860))
location: region:578142-647860:-1
so has part: feature:647608-647860:-1:exon
so has part: feature:578142-579061:-1:exon

XP_038624038.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:647608-647860:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:578142-579061:-1:exon

SIRT5
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: SIRT5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 680194..690526
location: region:680194-690526:1
so has part: feature:680194-690526:1:exon
subclass of: SO_0000010

119946675
type: Gene
SIO_000068: ncbigene

position:680194:1
position: 680194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:690526:1
position: 690526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:680194-690526:1:exon

SIRT5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: SIRT5
product: sirtuin 5
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 63% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038768091.1
SIO_010081: SIRT5
subclass of: SO_0000673
so part of: SIRT5
location: join(680194..680219,681722..681859,683002..683134,685128..685352,685682..685769,688124..688177,688346..688469,689213..689328,690422..690526)
location: region:680194-690526:1
so has part: feature:680194-680219:1:exon
so has part: feature:681722-681859:1:exon
so has part: feature:683002-683134:1:exon
so has part: feature:685128-685352:1:exon
so has part: feature:685682-685769:1:exon
so has part: feature:688124-688177:1:exon
so has part: feature:688346-688469:1:exon
so has part: feature:689213-689328:1:exon
so has part: feature:690422-690526:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:680194-680219:1:exon

position:680219:1
position: 680219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:681722-681859:1:exon

position:681722:1
position: 681722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:681859:1
position: 681859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:683002-683134:1:exon

position:683002:1
position: 683002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:683134:1
position: 683134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:685128-685352:1:exon

position:685128:1
position: 685128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:685352:1
position: 685352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:685682-685769:1:exon

position:685682:1
position: 685682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:685769:1
position: 685769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:688124-688177:1:exon

position:688124:1
position: 688124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:688177:1
position: 688177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:688346-688469:1:exon

position:688346:1
position: 688346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:688469:1
position: 688469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:689213-689328:1:exon

position:689213:1
position: 689213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:689328:1
position: 689328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:690422-690526:1:exon

position:690422:1
position: 690422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SIRT5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: SIRT5
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: NAD-dependent protein deacylase sirtuin-5, mitochondrial
translation: MRRLVSQLSGEPKFPASKKLKIRIGMARPSSSMADFREAFAKAKHVAILXGAGVSAESGVPTFRGAGRFWRKWQAQDLATPLAFAKNASRVWEFYHYWREVMLSKIPNPGHLAISECEARLGKQGRRIVLLTQIIDELHRRAGTKNXLEIHGSLFKTRCTSCGNVSKNYKSPIGPALAGKGAPEPEIQDARIPVENLPLCEEKGCSGLLRPHVVWFGENLDPDLLEEVDEELALCDLCLVVGTSSVVYPAAMFAPQVSARGVPVAEFNMETTPAMDQFRFHFXGPCGATLPAALARHETETVS
SIO_010081: SIRT5
subclass of: SO_0000673
so part of: SIRT5
location: join(681766..681859,683002..683134,685128..685352,685682..685769,688124..688177,688346..688469,689213..689328,690422..690496)
location: region:681766-690496:1
so has part: feature:681766-681859:1:exon
so has part: feature:683002-683134:1:exon
so has part: feature:685128-685352:1:exon
so has part: feature:685682-685769:1:exon
so has part: feature:688124-688177:1:exon
so has part: feature:688346-688469:1:exon
so has part: feature:689213-689328:1:exon
so has part: feature:690422-690496:1:exon

XP_038624019.1
type: Protein
SIO_000068: ncbiprotein

position:681766:1
position: 681766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:690496:1
position: 690496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:681766-681859:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:683002-683134:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:685128-685352:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:685682-685769:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:688124-688177:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:688346-688469:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:689213-689328:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:690422-690496:1:exon

LOC119946683
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946683
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 696657..703113
location: region:696657-703113:1
so has part: feature:696657-703113:1:exon
subclass of: SO_0000011

119946683
type: Gene
SIO_000068: ncbigene

position:696657:1
position: 696657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:703113:1
position: 703113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:696657-703113:1:exon

LOC119946683
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9261
nc RNA class: lncRNA
gene: LOC119946683
product: uncharacterized LOC119946683
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_005456451.1
SIO_010081: LOC119946683
subclass of: SO_0000673
so part of: LOC119946683
location: join(696657..696922,701027..703113)
location: region:696657-703113:1
so has part: feature:696657-696922:1:exon
so has part: feature:701027-703113:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:696657-696922:1:exon

position:696922:1
position: 696922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:701027-703113:1:exon

position:701027:1
position: 701027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NOL7
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: NOL7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 704732..709802
location: region:704732-709802:1
so has part: feature:704732-709802:1:exon
subclass of: SO_0000010

119946699
type: Gene
SIO_000068: ncbigene

position:704732:1
position: 704732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:709802:1
position: 709802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:704732-709802:1:exon

NOL7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: NOL7
product: nucleolar protein 7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 77% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038768115.1
SIO_010081: NOL7
subclass of: SO_0000673
so part of: NOL7
location: join(704732..704935,706081..706139,707369..707426,707744..707781,708264..708330,709112..709233,709317..709394,709544..709802)
location: region:704732-709802:1
so has part: feature:704732-704935:1:exon
so has part: feature:706081-706139:1:exon
so has part: feature:707369-707426:1:exon
so has part: feature:707744-707781:1:exon
so has part: feature:708264-708330:1:exon
so has part: feature:709112-709233:1:exon
so has part: feature:709317-709394:1:exon
so has part: feature:709544-709802:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:704732-704935:1:exon

position:704935:1
position: 704935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:706081-706139:1:exon

position:706081:1
position: 706081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:706139:1
position: 706139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:707369-707426:1:exon

position:707369:1
position: 707369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:707426:1
position: 707426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:707744-707781:1:exon

position:707744:1
position: 707744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:707781:1
position: 707781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:708264-708330:1:exon

position:708264:1
position: 708264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:708330:1
position: 708330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:709112-709233:1:exon

position:709112:1
position: 709112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:709233:1
position: 709233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:709317-709394:1:exon

position:709317:1
position: 709317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:709394:1
position: 709394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:709544-709802:1:exon

position:709544:1
position: 709544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NOL7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: NOL7
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 3 bases at 3 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:704829..704831,aa:OTHER)
transl except: (pos:704832..704834,aa:OTHER)
transl except: (pos:708320..708322,aa:OTHER)
product: LOW QUALITY PROTEIN: nucleolar protein 7
translation: MVNLRPRPGRTAEPEMAVAEQQQQQEDXXEEEEDAAAPDLVTFATTEVREKEKQKRLWESERREKALLKEKRKRREELFAEQKKKKLLPASVLVELAAPQPEVKESPETNEENENLKTKSKAAAVKGKKKGQRXGVNTKKKYIAVRLQDHTLANKQMRAAKDFIQKQLYGRGSNRTTVNQFFSLANKKLPVKKVAIQFVNKTWGSEEERRAKELKKCLIHRRNSVSIKRK
SIO_010081: NOL7
subclass of: SO_0000673
so part of: NOL7
location: join(704748..704935,706081..706139,707369..707426,707744..707781,708264..708330,709112..709233,709317..709394,709544..709626)
location: region:704748-709626:1
so has part: feature:704748-704935:1:exon
so has part: feature:706081-706139:1:exon
so has part: feature:707369-707426:1:exon
so has part: feature:707744-707781:1:exon
so has part: feature:708264-708330:1:exon
so has part: feature:709112-709233:1:exon
so has part: feature:709317-709394:1:exon
so has part: feature:709544-709626:1:exon

XP_038624043.1
type: Protein
SIO_000068: ncbiprotein

position:704748:1
position: 704748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:709626:1
position: 709626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:704748-704935:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:706081-706139:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:707369-707426:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:707744-707781:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:708264-708330:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:709112-709233:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:709317-709394:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:709544-709626:1:exon

RANBP9
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: RANBP9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(711182..763720)
location: region:711182-763720:-1
so has part: feature:711182-763720:-1:exon
subclass of: SO_0000010

119946698
type: Gene
SIO_000068: ncbigene

position:711182:-1
position: 711182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:763720:-1
position: 763720
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:711182-763720:-1:exon

RANBP9
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: RANBP9
product: RAN binding protein 9, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_038768114.1
SIO_010081: RANBP9
subclass of: SO_0000673
so part of: RANBP9
location: complement(join(711182..711600,712807..712918,713566..713717,715313..715431,719126..719273,719627..719817,721234..721342,722900..723012,724642..724826,727731..727753,730867..731034,732057..732109,743065..743176,763628..763720))
location: region:711182-763720:-1
so has part: feature:763628-763720:-1:exon
so has part: feature:743065-743176:-1:exon
so has part: feature:732057-732109:-1:exon
so has part: feature:730867-731034:-1:exon
so has part: feature:727731-727753:-1:exon
so has part: feature:724642-724826:-1:exon
so has part: feature:722900-723012:-1:exon
so has part: feature:721234-721342:-1:exon
so has part: feature:719627-719817:-1:exon
so has part: feature:719126-719273:-1:exon
so has part: feature:715313-715431:-1:exon
so has part: feature:713566-713717:-1:exon
so has part: feature:712807-712918:-1:exon
so has part: feature:711182-711600:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:763628-763720:-1:exon

position:763628:-1
position: 763628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:743065-743176:-1:exon

position:743065:-1
position: 743065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:743176:-1
position: 743176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:732057-732109:-1:exon

position:732057:-1
position: 732057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:732109:-1
position: 732109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:730867-731034:-1:exon

position:730867:-1
position: 730867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:731034:-1
position: 731034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:727731-727753:-1:exon

position:727731:-1
position: 727731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:727753:-1
position: 727753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:724642-724826:-1:exon

position:724642:-1
position: 724642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:724826:-1
position: 724826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:722900-723012:-1:exon

position:722900:-1
position: 722900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:723012:-1
position: 723012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:721234-721342:-1:exon

position:721234:-1
position: 721234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:721342:-1
position: 721342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:719627-719817:-1:exon

position:719627:-1
position: 719627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:719817:-1
position: 719817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:719126-719273:-1:exon

position:719126:-1
position: 719126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:719273:-1
position: 719273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:715313-715431:-1:exon

position:715313:-1
position: 715313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:715431:-1
position: 715431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:713566-713717:-1:exon

position:713566:-1
position: 713566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:713717:-1
position: 713717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:712807-712918:-1:exon

position:712807:-1
position: 712807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:712918:-1
position: 712918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:711182-711600:-1:exon

position:711600:-1
position: 711600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RANBP9
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: RANBP9
product: RAN binding protein 9, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_038768113.1
SIO_010081: RANBP9
subclass of: SO_0000673
so part of: RANBP9
location: complement(join(711182..711600,712807..712918,713566..713717,715313..715434,719126..719273,719627..719817,721234..721342,722900..723012,724642..724826,727731..727753,730867..731034,732057..732109,743065..743176,763628..763716))
location: region:711182-763716:-1
so has part: feature:763628-763716:-1:exon
so has part: feature:743065-743176:-1:exon
so has part: feature:732057-732109:-1:exon
so has part: feature:730867-731034:-1:exon
so has part: feature:727731-727753:-1:exon
so has part: feature:724642-724826:-1:exon
so has part: feature:722900-723012:-1:exon
so has part: feature:721234-721342:-1:exon
so has part: feature:719627-719817:-1:exon
so has part: feature:719126-719273:-1:exon
so has part: feature:715313-715434:-1:exon
so has part: feature:713566-713717:-1:exon
so has part: feature:712807-712918:-1:exon
so has part: feature:711182-711600:-1:exon

position:763716:-1
position: 763716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:763628-763716:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:743065-743176:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:732057-732109:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:730867-731034:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:727731-727753:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:724642-724826:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:722900-723012:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:721234-721342:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:719627-719817:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:719126-719273:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:715313-715434:-1:exon

position:715434:-1
position: 715434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:713566-713717:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:712807-712918:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:711182-711600:-1:exon

RANBP9
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: RANBP9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ran-binding protein 9 isoform X2
translation: MLWTYSVQDMFQGHGKTPKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLIINTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTPGEVVDANFGQHPFVFDIEDYMREWRTKIQAQIDQFPTGDREGEWQTMIQKMVSSYLVHHGYSATAEAFARSTDQAVLEELASIKNRQRIQKLVLAGRMGEAIETTQQLYPSLLERNPNLLFTLKVRQFIEMVNGTDSEVRCLGVRSPKSQDSYPVSPRSFSSPSMSPSHGMNIHCLASSKGNTAHFSGFESCCSNGVISNKAHQTYCHSKHQSTSLNVPELNSINVSRSQQVNSFTSDVDMETDHYANGVGESSSNGFVNGSSKHDHEMEECDTEMEVDSSQLRRQLCGGSQAAIERMIHFGRELQAMSEQLRRECGKNTANKKMLKDAFSLLAYSDPWSSPVGNQLDPIQREPVCSALNSAILETHNLPKQPPLALAMGQATQCLGLMARSGIGSCAFATVEDYLH
SIO_010081: RANBP9
subclass of: SO_0000673
so part of: RANBP9
location: complement(join(711470..711600,712807..712918,713566..713717,715313..715431,719126..719273,719627..719817,721234..721342,722900..723012,724642..724826,727731..727753,730867..731034,732057..732109,743065..743176,763628..763664))
location: region:711470-763664:-1
so has part: feature:763628-763664:-1:exon
so has part: feature:743065-743176:-1:exon
so has part: feature:732057-732109:-1:exon
so has part: feature:730867-731034:-1:exon
so has part: feature:727731-727753:-1:exon
so has part: feature:724642-724826:-1:exon
so has part: feature:722900-723012:-1:exon
so has part: feature:721234-721342:-1:exon
so has part: feature:719627-719817:-1:exon
so has part: feature:719126-719273:-1:exon
so has part: feature:715313-715431:-1:exon
so has part: feature:713566-713717:-1:exon
so has part: feature:712807-712918:-1:exon
so has part: feature:711470-711600:-1:exon

XP_038624042.1
type: Protein
SIO_000068: ncbiprotein

position:711470:-1
position: 711470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:763664:-1
position: 763664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:763628-763664:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:743065-743176:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:732057-732109:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:730867-731034:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:727731-727753:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:724642-724826:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:722900-723012:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:721234-721342:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:719627-719817:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:719126-719273:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:715313-715431:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:713566-713717:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:712807-712918:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:711470-711600:-1:exon

RANBP9
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: RANBP9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ran-binding protein 9 isoform X1
translation: MLWTYSVQDMFQGHGKTPKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLIINTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTPGEVVDANFGQHPFVFDIEDYMREWRTKIQAQIDQFPTGDREGEWQTMIQKMVSSYLVHHGYSATAEAFARSTDQAVLEELASIKNRQRIQKLVLAGRMGEAIETTQQLYPSLLERNPNLLFTLKVRQFIEMVNGTDSEVRCLGVRSPKSQDSYPVSPRSFSSPSMSPSHGMNIHCLASSKGNTAHFSGFESCCSNGVISNKAHQTYCHSKHQSTSLNVPELNSINVSRSQQVNSFTSSDVDMETDHYANGVGESSSNGFVNGSSKHDHEMEECDTEMEVDSSQLRRQLCGGSQAAIERMIHFGRELQAMSEQLRRECGKNTANKKMLKDAFSLLAYSDPWSSPVGNQLDPIQREPVCSALNSAILETHNLPKQPPLALAMGQATQCLGLMARSGIGSCAFATVEDYLH
SIO_010081: RANBP9
subclass of: SO_0000673
so part of: RANBP9
location: complement(join(711470..711600,712807..712918,713566..713717,715313..715434,719126..719273,719627..719817,721234..721342,722900..723012,724642..724826,727731..727753,730867..731034,732057..732109,743065..743176,763628..763664))
location: region:711470-763664:-1
so has part: feature:763628-763664:-1:exon
so has part: feature:743065-743176:-1:exon
so has part: feature:732057-732109:-1:exon
so has part: feature:730867-731034:-1:exon
so has part: feature:727731-727753:-1:exon
so has part: feature:724642-724826:-1:exon
so has part: feature:722900-723012:-1:exon
so has part: feature:721234-721342:-1:exon
so has part: feature:719627-719817:-1:exon
so has part: feature:719126-719273:-1:exon
so has part: feature:715313-715434:-1:exon
so has part: feature:713566-713717:-1:exon
so has part: feature:712807-712918:-1:exon
so has part: feature:711470-711600:-1:exon

XP_038624041.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:763628-763664:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:743065-743176:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:732057-732109:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:730867-731034:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:727731-727753:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:724642-724826:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:722900-723012:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:721234-721342:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:719627-719817:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:719126-719273:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:715313-715434:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:713566-713717:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:712807-712918:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:711470-711600:-1:exon

LOC119946701
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946701
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 830604..830741
location: region:830604-830741:1
so has part: feature:830604-830741:1:exon
subclass of: SO_0000578

119946701
type: Gene
SIO_000068: ncbigene

position:830604:1
position: 830604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:830741:1
position: 830741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:830604-830741:1:exon

LOC119946701
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9261
nc RNA class: snoRNA
gene: LOC119946701
product: small nucleolar RNA SNORA7
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00409
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_005456458.1
SIO_010081: LOC119946701
subclass of: SO_0000673
so part of: LOC119946701
location: 830604..830741
location: region:830604-830741:1
so has part: feature:830604-830741:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:830604-830741:1:exon

RNF182
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: RNF182
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(838642..887384)
location: region:838642-887384:-1
so has part: feature:838642-887384:-1:exon
subclass of: SO_0000010

119946681
type: Gene
SIO_000068: ncbigene

position:838642:-1
position: 838642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:887384:-1
position: 887384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:838642-887384:-1:exon

RNF182
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: RNF182
product: ring finger protein 182, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_038768097.1
SIO_010081: RNF182
subclass of: SO_0000673
so part of: RNF182
location: complement(join(838642..841697,849191..849270,887349..887384))
location: region:838642-887384:-1
so has part: feature:887349-887384:-1:exon
so has part: feature:849191-849270:-1:exon
so has part: feature:838642-841697:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:887349-887384:-1:exon

position:887349:-1
position: 887349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:849191-849270:-1:exon

position:849191:-1
position: 849191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:849270:-1
position: 849270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:838642-841697:-1:exon

position:841697:-1
position: 841697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RNF182
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: RNF182
product: ring finger protein 182, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_038768096.1
SIO_010081: RNF182
subclass of: SO_0000673
so part of: RNF182
location: complement(join(838642..841697,849191..849270,886744..887151))
location: region:838642-887151:-1
so has part: feature:886744-887151:-1:exon
so has part: feature:849191-849270:-1:exon
so has part: feature:838642-841697:-1:exon

position:887151:-1
position: 887151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:886744-887151:-1:exon

position:886744:-1
position: 886744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:849191-849270:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:838642-841697:-1:exon

RNF182
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: RNF182
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase RNF182
translation: MTTPLPEETPEAQASDELECKICYNGYNLRQRKPKVLECCHRVCAKCLYKILDFGDSPQGIISCPFCRFVTCLPDDEVSSLPDDNNILVNLACGGKGKKFPLDNPTELVLTPKRLASLVSPSHASSNCLVITIMEVQRESPLSLSSTPMVEFYRPTSFDSMATVSHNWTVWNCTSLLFQTSIRVLVWLLGLLYFSSLPLGIYLLVSKKVTLGVIFVSLIPSSLVILMVYGFCQCVCHEFLDCMSSPS
SIO_010081: RNF182
subclass of: SO_0000673
so part of: RNF182
location: complement(840723..841466)
location: region:840723-841466:-1
so has part: feature:840723-841466:-1:exon

XP_038624024.1
type: Protein
SIO_000068: ncbiprotein

position:840723:-1
position: 840723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:841466:-1
position: 841466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840723-841466:-1:exon

RNF182
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: RNF182
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase RNF182
translation: MTTPLPEETPEAQASDELECKICYNGYNLRQRKPKVLECCHRVCAKCLYKILDFGDSPQGIISCPFCRFVTCLPDDEVSSLPDDNNILVNLACGGKGKKFPLDNPTELVLTPKRLASLVSPSHASSNCLVITIMEVQRESPLSLSSTPMVEFYRPTSFDSMATVSHNWTVWNCTSLLFQTSIRVLVWLLGLLYFSSLPLGIYLLVSKKVTLGVIFVSLIPSSLVILMVYGFCQCVCHEFLDCMSSPS
SIO_010081: RNF182
subclass of: SO_0000673
so part of: RNF182
location: complement(840723..841466)
location: region:840723-841466:-1
so has part: feature:840723-841466:-1:exon

XP_038624025.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:840723-841466:-1:exon

CD83
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: CD83
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 928560..949510
location: region:928560-949510:1
so has part: feature:928560-949510:1:exon
subclass of: SO_0000010

119946693
type: Gene
SIO_000068: ncbigene

position:928560:1
position: 928560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:949510:1
position: 949510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:928560-949510:1:exon

CD83
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: CD83
product: CD83 molecule
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 65% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038768107.1
SIO_010081: CD83
subclass of: SO_0000673
so part of: CD83
location: join(928560..928631,930906..931042,945093..945312,946991..947094,949245..949510)
location: region:928560-949510:1
so has part: feature:928560-928631:1:exon
so has part: feature:930906-931042:1:exon
so has part: feature:945093-945312:1:exon
so has part: feature:946991-947094:1:exon
so has part: feature:949245-949510:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:928560-928631:1:exon

position:928631:1
position: 928631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:930906-931042:1:exon

position:930906:1
position: 930906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:931042:1
position: 931042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:945093-945312:1:exon

position:945093:1
position: 945093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:945312:1
position: 945312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:946991-947094:1:exon

position:946991:1
position: 946991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:947094:1
position: 947094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:949245-949510:1:exon

position:949245:1
position: 949245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CD83
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: CD83
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CD83 antigen
translation: MLMMTSPLCRPDMLCLRLLLLASAWGLVRTAQLELRTNTVTVTCSEDALLICPATWEPQAHQPRVFWSKLHKNREELIEDLNLYEQSTSFKEINGLYNVSGDSLHSLKIRNTSSWSTGMFRCTLWSPEGEQNTTGTVFLKVIGCPKEQKDMFEKHKAELLLLFFLGVFYIWLIIFTCKFAKMYSTLGKHDLRYSFPVVLSQEKKGGQHLKSATLPKMDLV
SIO_010081: CD83
subclass of: SO_0000673
so part of: CD83
location: join(928562..928631,930906..931042,945093..945312,946991..947094,949245..949376)
location: region:928562-949376:1
so has part: feature:928562-928631:1:exon
so has part: feature:930906-931042:1:exon
so has part: feature:945093-945312:1:exon
so has part: feature:946991-947094:1:exon
so has part: feature:949245-949376:1:exon

XP_038624035.1
type: Protein
SIO_000068: ncbiprotein

position:928562:1
position: 928562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:949376:1
position: 949376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:928562-928631:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:930906-931042:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:945093-945312:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:946991-947094:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:949245-949376:1:exon

LOC119946702
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946702
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 1199178..1199315
location: region:1199178-1199315:1
so has part: feature:1199178-1199315:1:exon
subclass of: SO_0000578

119946702
type: Gene
SIO_000068: ncbigene

position:1199178:1
position: 1199178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1199315:1
position: 1199315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1199178-1199315:1:exon

LOC119946702
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9261
nc RNA class: snoRNA
gene: LOC119946702
product: small nucleolar RNA SNORA7
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00409
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_005456459.1
SIO_010081: LOC119946702
subclass of: SO_0000673
so part of: LOC119946702
location: 1199178..1199315
location: region:1199178-1199315:1
so has part: feature:1199178-1199315:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1199178-1199315:1:exon

JARID2
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: JARID2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1451110..1680913
location: region:1451110-1680913:1
so has part: feature:1451110-1680913:1:exon
subclass of: SO_0000010

119946673
type: Gene
SIO_000068: ncbigene

position:1451110:1
position: 1451110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1680913:1
position: 1680913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1451110-1680913:1:exon

JARID2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: JARID2
product: jumonji and AT-rich interaction domain containing 2
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_038768089.1
SIO_010081: JARID2
subclass of: SO_0000673
so part of: JARID2
location: join(1451110..1451601,1580208..1580343,1604579..1604720,1633300..1633469,1643705..1643881,1653304..1653536,1661954..1662972,1665819..1666315,1668575..1668667,1670046..1670164,1670268..1670338,1671051..1671165,1672650..1672755,1674317..1674499,1675879..1676009,1676780..1676987,1678500..1678607,1680017..1680913)
location: region:1451110-1680913:1
so has part: feature:1451110-1451601:1:exon
so has part: feature:1580208-1580343:1:exon
so has part: feature:1604579-1604720:1:exon
so has part: feature:1633300-1633469:1:exon
so has part: feature:1643705-1643881:1:exon
so has part: feature:1653304-1653536:1:exon
so has part: feature:1661954-1662972:1:exon
so has part: feature:1665819-1666315:1:exon
so has part: feature:1668575-1668667:1:exon
so has part: feature:1670046-1670164:1:exon
so has part: feature:1670268-1670338:1:exon
so has part: feature:1671051-1671165:1:exon
so has part: feature:1672650-1672755:1:exon
so has part: feature:1674317-1674499:1:exon
so has part: feature:1675879-1676009:1:exon
so has part: feature:1676780-1676987:1:exon
so has part: feature:1678500-1678607:1:exon
so has part: feature:1680017-1680913:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1451110-1451601:1:exon

position:1451601:1
position: 1451601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1580208-1580343:1:exon

position:1580208:1
position: 1580208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1580343:1
position: 1580343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1604579-1604720:1:exon

position:1604579:1
position: 1604579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1604720:1
position: 1604720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1633300-1633469:1:exon

position:1633300:1
position: 1633300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1633469:1
position: 1633469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1643705-1643881:1:exon

position:1643705:1
position: 1643705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1643881:1
position: 1643881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1653304-1653536:1:exon

position:1653304:1
position: 1653304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1653536:1
position: 1653536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1661954-1662972:1:exon

position:1661954:1
position: 1661954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1662972:1
position: 1662972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1665819-1666315:1:exon

position:1665819:1
position: 1665819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1666315:1
position: 1666315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1668575-1668667:1:exon

position:1668575:1
position: 1668575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1668667:1
position: 1668667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1670046-1670164:1:exon

position:1670046:1
position: 1670046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1670164:1
position: 1670164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1670268-1670338:1:exon

position:1670268:1
position: 1670268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1670338:1
position: 1670338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1671051-1671165:1:exon

position:1671051:1
position: 1671051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1671165:1
position: 1671165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1672650-1672755:1:exon

position:1672650:1
position: 1672650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1672755:1
position: 1672755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1674317-1674499:1:exon

position:1674317:1
position: 1674317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1674499:1
position: 1674499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1675879-1676009:1:exon

position:1675879:1
position: 1675879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1676009:1
position: 1676009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1676780-1676987:1:exon

position:1676780:1
position: 1676780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1676987:1
position: 1676987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1678500-1678607:1:exon

position:1678500:1
position: 1678500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1678607:1
position: 1678607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1680017-1680913:1:exon

position:1680017:1
position: 1680017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

JARID2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: JARID2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: protein Jumonji
translation: MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNAQKRQQSDGLTGSLKAVNGLLTNSQAKGLGAGSEQSENEKDDASQVSSTSNDVSSSDFEEGPSRKRPRLQAQRKFAQSQPNSPSTTPMKIVEPLLPPPATQISDLSKRKPKTEDFLTFLCLRGSPALPHNMVYFGSSQDEEDVEEDDEETEDIKTATNNASSSCQSTPRKGKTHKHVHNGQVFSGSRKSSRERDPAQKHKSRESTPGKEKTSEPRADSQKEQGPAPPTPALSMGPSSKGPAASSHHHTLHRSAQDFRKQVSKVNGITRTSSLGAHTASAKKMRHVRPSPSKTVKYTATVTRGTVTYTKAKRELVKETKLSHHKPRSAVNHTISGKTESSNAKTRKQVLSLGGASRPTRPTVNGVKVNGKLNPKSCTKEVGRQLREGLRNSKRRLEEAHQVEKTQSPPKKVKGAEAPSKKPAPALAQRPQLNGHVRKELPEKVLERNRPKRAAAGKTPPGKQAHGKSESASCEHRSTSHPEPLHKPHDAPGRADKGGSWPGWATMDEIPTLRPSSREFHDPLIFIESVRAQVEKFGMCRVIPPPDWRPECKLNDEMRFVTQIQHIHKLGRRWGPNVQQLACIKKHLKSQGITMDELPLIGGCELDLACFFQLINEMGGMQQVTDLKKWNKLADLLRIPKTAQDRLAKLQEAYCQYLLSYDSLSAEEHRRLEKEVLLEKESLEKRRGPLEGHSENAYHRLHALPRFEPKNGLIHGPAHENGFRNKLKEVDMALLKTGRRRLFAQEKEVVEEKEKGVLGDFHKCIYKGRSVSLTTFYRTARNIMSMCFNKEPATAEIEQEYWRLVEQKDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSILRHLGAVPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLDDVVHTLLQANGTPGLEMLESNVMISPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYSVSETVHFATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIATVEAKKENGPALSTISALLDELRDTELRQRRQLFEAGLHSSARYGSHDGSGGGGGCGGGSAADGKKKPRKWLQLETSERRCQICQHLCYLSMVVQENENVVFCLECALHHVEKQKSCRGLKLMYRYDEEQIISLVNQICGKASRKNGSVEHRLSKPPPKRGPRKRATVDVPPARLTSSSSSKSAASSS
SIO_010081: JARID2
subclass of: SO_0000673
so part of: JARID2
location: join(1451557..1451601,1580208..1580343,1604579..1604720,1633300..1633469,1643705..1643881,1653304..1653536,1661954..1662972,1665819..1666315,1668575..1668667,1670046..1670164,1670268..1670338,1671051..1671165,1672650..1672755,1674317..1674499,1675879..1676009,1676780..1676987,1678500..1678607,1680017..1680199)
location: region:1451557-1680199:1
so has part: feature:1451557-1451601:1:exon
so has part: feature:1580208-1580343:1:exon
so has part: feature:1604579-1604720:1:exon
so has part: feature:1633300-1633469:1:exon
so has part: feature:1643705-1643881:1:exon
so has part: feature:1653304-1653536:1:exon
so has part: feature:1661954-1662972:1:exon
so has part: feature:1665819-1666315:1:exon
so has part: feature:1668575-1668667:1:exon
so has part: feature:1670046-1670164:1:exon
so has part: feature:1670268-1670338:1:exon
so has part: feature:1671051-1671165:1:exon
so has part: feature:1672650-1672755:1:exon
so has part: feature:1674317-1674499:1:exon
so has part: feature:1675879-1676009:1:exon
so has part: feature:1676780-1676987:1:exon
so has part: feature:1678500-1678607:1:exon
so has part: feature:1680017-1680199:1:exon

XP_038624017.1
type: Protein
SIO_000068: ncbiprotein

position:1451557:1
position: 1451557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1680199:1
position: 1680199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1451557-1451601:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1580208-1580343:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1604579-1604720:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1633300-1633469:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1643705-1643881:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1653304-1653536:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1661954-1662972:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1665819-1666315:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1668575-1668667:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1670046-1670164:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1670268-1670338:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1671051-1671165:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1672650-1672755:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1674317-1674499:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1675879-1676009:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1676780-1676987:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1678500-1678607:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1680017-1680199:1:exon

DTNBP1
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: DTNBP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1681407..1760066)
location: region:1681407-1760066:-1
so has part: feature:1681407-1760066:-1:exon
subclass of: SO_0000010

119946674
type: Gene
SIO_000068: ncbigene

position:1681407:-1
position: 1681407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1760066:-1
position: 1760066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1681407-1760066:-1:exon

DTNBP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: DTNBP1
product: dystrobrevin binding protein 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_038768090.1
SIO_010081: DTNBP1
subclass of: SO_0000673
so part of: DTNBP1
location: complement(join(1681407..1683296,1684623..1684766,1687226..1687381,1740161..1740182,1750013..1750146,1760048..1760066))
location: region:1681407-1760066:-1
so has part: feature:1760048-1760066:-1:exon
so has part: feature:1750013-1750146:-1:exon
so has part: feature:1740161-1740182:-1:exon
so has part: feature:1687226-1687381:-1:exon
so has part: feature:1684623-1684766:-1:exon
so has part: feature:1681407-1683296:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1760048-1760066:-1:exon

position:1760048:-1
position: 1760048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1750013-1750146:-1:exon

position:1750013:-1
position: 1750013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1750146:-1
position: 1750146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1740161-1740182:-1:exon

position:1740161:-1
position: 1740161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1740182:-1
position: 1740182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1687226-1687381:-1:exon

position:1687226:-1
position: 1687226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1687381:-1
position: 1687381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1684623-1684766:-1:exon

position:1684623:-1
position: 1684623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1684766:-1
position: 1684766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1681407-1683296:-1:exon

position:1683296:-1
position: 1683296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DTNBP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: DTNBP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dysbindin
translation: MEHTQQIKLKERQKFFEEAFQQDMEHYLSTGYLQIAERREPIGSMSSMEVNVDMLEQLDLMDMSDQEALDVFLNLGGEDNPASSLGLGLESKICQHELNLQVPNLEQPRTKPSWSSSTCTNSASQDVSEGGESPVVQSDEEEVQVDTALATLTTDPTASPDGSKESDSQTA
SIO_010081: DTNBP1
subclass of: SO_0000673
so part of: DTNBP1
location: complement(join(1683043..1683296,1684623..1684766,1687226..1687343))
location: region:1683043-1687343:-1
so has part: feature:1687226-1687343:-1:exon
so has part: feature:1684623-1684766:-1:exon
so has part: feature:1683043-1683296:-1:exon

XP_038624018.1
type: Protein
SIO_000068: ncbiprotein

position:1683043:-1
position: 1683043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1687343:-1
position: 1687343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1687226-1687343:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1684623-1684766:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1683043-1683296:-1:exon

LOC119946658
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946658
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1924830..1931441
location: region:1924830-1931441:1
so has part: feature:1924830-1931441:1:exon
subclass of: SO_0000010

119946658
type: Gene
SIO_000068: ncbigene

position:1924830:1
position: 1924830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1931441:1
position: 1931441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1924830-1931441:1:exon

LOC119946658
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: LOC119946658
product: uncharacterized LOC119946658
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038768076.1
SIO_010081: LOC119946658
subclass of: SO_0000673
so part of: LOC119946658
location: join(1924830..1924856,1925037..1925334,1925420..1925499,1925930..1926103,1926461..1929925,1930528..1931441)
location: region:1924830-1931441:1
so has part: feature:1924830-1924856:1:exon
so has part: feature:1925037-1925334:1:exon
so has part: feature:1925420-1925499:1:exon
so has part: feature:1925930-1926103:1:exon
so has part: feature:1926461-1929925:1:exon
so has part: feature:1930528-1931441:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1924830-1924856:1:exon

position:1924856:1
position: 1924856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1925037-1925334:1:exon

position:1925037:1
position: 1925037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1925334:1
position: 1925334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1925420-1925499:1:exon

position:1925420:1
position: 1925420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1925499:1
position: 1925499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1925930-1926103:1:exon

position:1925930:1
position: 1925930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1926103:1
position: 1926103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1926461-1929925:1:exon

position:1926461:1
position: 1926461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1929925:1
position: 1929925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1930528-1931441:1:exon

position:1930528:1
position: 1930528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC119946658
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: LOC119946658
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC119946658
translation: MRNVLIFGQRRADKYGVSVNNFDLRRFCELEWPAFKVGWPDTGTLDIGVAAAVRRVVDGNPGHPDQIPYITIWIDIIVDNPKYLKDCGCRPLGATKVLVSSTLGSKVARNPQPRLRKKFFPNQTPPVLQAPPTPEILLRGLRAAARKPTNLSKITEVRQGPTESPTAYLERLYQAYRTWTPIDPGSPDNQAAIGRRGPSALQEPRLKLKVGGQLIDFLVDTGATHSVVQKPVGPVTKDTVTIVGATGATRRYPKTEGRIVDLGKGLVTHSFLVIPECPDPLLGRDLLHKLRATIIFSEAGTPEIRTEGKLLLSSPLVEEYRLFVEQPAQNLALLDLWREDIPEVWAESNPPGLATTQVPVHVQLTSTALPIRIRQYPISLEARRNLRGSIRKFKEAGILRPVHSPWNTPLLPVRKTGTSEYRMVQDLREVNKRVETIHPTVPNPYTLLSLLPPDRTWYSVLDLKDAFFCIPLTCQSQLLFAFEWVDMEEGESGQLTWTRLPQGFKNSPTLFDEALSRDLQGYRFDHPTVTLLQYVDDLLIAAGSRDECLQATRDLLVALGSMGYRVSGSKAQLCQEEVTYLGFKIKDGTRTLAQSRVQAILQVPAPKTKKQVREFLGTVGYCRLWIPSFAELAQPLYAATRGGDAPLRWTGTEEEAFQRLKTALLQPPALALPNLDKPFQLFVDEAKGVAKGVLMQTLGPWKRPVAYLSRKLDPVAAGWPRCLRAIAAAALLSKEASKLTFEQSLEITSSHNLEGLLRTPPDKWLTNARVTQYQVLLLDPPRVIFKQTAALNPATLLPATDDSLPLHHCADTLDALTTTRPDLTDQPLADAEATLFTDGSSYVKEGLRYAGAAVVTTNSIVWAEALPRGTSAQRAELIALTKALEWSRDKTVNIYTDSRYAFATLHVHAMIYKERGLLTAGGRAIKNASEILALLTAIWLPKRVAVIHCRGHQQGKSLEALGNRLADKTAREVAKKSPAIQASLNDSPRTPVDWVPADTPQYTKEEEALGQRLGGTADPTGWWRLPDGRILLPKAVGRRIVEQTHRASHLGESKLAEVIRKHYLICGIYGAVKDVVRRCEACARVNAQSVPASSAENVRNRGLAPGEHWEIDFTEMTPARGGYKYLLVLVDTFSGWVEAYPARGETAQIVVKHLANDLVPRFGLPLRIGSDNGPAFVAKITQQLASALRITWKLHCAYRPQSSGQVERMNRTLKETITKLKMETGGDWVALLPQALFRARCTPGREGLSPFEIVYGLRPPLVPRVGLDQLAEVTHRSLLKSLQALQATRSLARTTLADQQPGAEVHREREPLFQPGDLVYVKTPDPRQLAPRWDGPFTVVLSTPTAVKLIEDVQALSGTIRDLQDQIDSLATVVLQNRRGLDLLTAEQGGICLALREHCCFYANKSGIVRDKIRKLQEDLAVRRQELANNPLWSGFNGLLPYLLPLLGPLFALILVLSIGPCLFRTGARMLQDRLQAIKVLALMSPYQPVPSEDPSPA
SIO_010081: LOC119946658
subclass of: SO_0000673
so part of: LOC119946658
location: join(1924830..1924856,1925037..1925334,1925420..1925499,1925930..1926103,1926461..1929925,1930528..1930980)
location: region:1924830-1930980:1
so has part: feature:1924830-1924856:1:exon
so has part: feature:1925037-1925334:1:exon
so has part: feature:1925420-1925499:1:exon
so has part: feature:1925930-1926103:1:exon
so has part: feature:1926461-1929925:1:exon
so has part: feature:1930528-1930980:1:exon

XP_038624004.1
type: Protein
SIO_000068: ncbiprotein

position:1930980:1
position: 1930980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1924830-1924856:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1925037-1925334:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1925420-1925499:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1925930-1926103:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1926461-1929925:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1930528-1930980:1:exon

LOC119946682
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946682
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1955001..1973432
location: region:1955001-1973432:1
so has part: feature:1955001-1973432:1:exon
subclass of: SO_0000010

119946682
type: Gene
SIO_000068: ncbigene

position:1955001:1
position: 1955001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1973432:1
position: 1973432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1955001-1973432:1:exon

LOC119946682
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: LOC119946682
product: myosin regulatory light chain interacting protein, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_038768099.1
SIO_010081: LOC119946682
subclass of: SO_0000673
so part of: LOC119946682
location: join(1955001..1955129,1957319..1957509,1967661..1967846,1968747..1968944,1970586..1971006,1971912..1973432)
location: region:1955001-1973432:1
so has part: feature:1955001-1955129:1:exon
so has part: feature:1957319-1957509:1:exon
so has part: feature:1967661-1967846:1:exon
so has part: feature:1968747-1968944:1:exon
so has part: feature:1970586-1971006:1:exon
so has part: feature:1971912-1973432:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1955001-1955129:1:exon

position:1955129:1
position: 1955129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1957319-1957509:1:exon

position:1957319:1
position: 1957319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1957509:1
position: 1957509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1967661-1967846:1:exon

position:1967661:1
position: 1967661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1967846:1
position: 1967846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1968747-1968944:1:exon

position:1968747:1
position: 1968747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1968944:1
position: 1968944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1970586-1971006:1:exon

position:1970586:1
position: 1970586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1971006:1
position: 1971006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1971912-1973432:1:exon

position:1971912:1
position: 1971912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC119946682
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: LOC119946682
product: myosin regulatory light chain interacting protein, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_038768098.1
SIO_010081: LOC119946682
subclass of: SO_0000673
so part of: LOC119946682
location: join(1955005..1955129,1957319..1957509,1967661..1967846,1968747..1968944,1969737..1969901,1970586..1971006,1971912..1973432)
location: region:1955005-1973432:1
so has part: feature:1955005-1955129:1:exon
so has part: feature:1957319-1957509:1:exon
so has part: feature:1967661-1967846:1:exon
so has part: feature:1968747-1968944:1:exon
so has part: feature:1969737-1969901:1:exon
so has part: feature:1970586-1971006:1:exon
so has part: feature:1971912-1973432:1:exon

position:1955005:1
position: 1955005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1955005-1955129:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1957319-1957509:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1967661-1967846:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1968747-1968944:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1969737-1969901:1:exon

position:1969737:1
position: 1969737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1969901:1
position: 1969901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1970586-1971006:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1971912-1973432:1:exon

LOC119946682
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: LOC119946682
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase MYLIP isoform X1
translation: MLCYVTRPDAVLMEVEVEAKANGEDCLNQVCRKLGIIEVDYFGLQFTGSKGENLWLNLRNRISQQLDGLAPYRLKLRVKFFVEPHLILQEQTRHMFFLHIKEDLLAGNLQCSSEHADELSALLAQSKFGDYIQNTAKYSYEELCAKELSSAALDSITTKHKELEGTSQASAEYQVLQIVSAVENYGVEWHSVRDSEGQKLLIGVGPKGISICKDDFSPINRIAYPVVQMATQSGKNVYLTVTKESGNSIVLLFKMISTRAASGLYRAITETHAFYRCDTVTSAVMMQYSRDLKGHLASLFLNENINLGKKYVFDIKRTSKEVYDHARRMLYNAEVVDLVPWRGPSPLSSPLKSSENGRNCGSCEGLSCQQTKALQDKLQNLKEAMLCMVCCEEEINSTLCPCGHTVCCKKCAGQLQACPVCRSHVEHVQHVYLPTHTSLLNLTVI
SIO_010081: LOC119946682
subclass of: SO_0000673
so part of: LOC119946682
location: join(1955043..1955129,1957319..1957509,1967661..1967846,1968747..1968944,1969737..1969901,1970586..1971006,1971912..1972001)
location: region:1955043-1972001:1
so has part: feature:1955043-1955129:1:exon
so has part: feature:1957319-1957509:1:exon
so has part: feature:1967661-1967846:1:exon
so has part: feature:1968747-1968944:1:exon
so has part: feature:1969737-1969901:1:exon
so has part: feature:1970586-1971006:1:exon
so has part: feature:1971912-1972001:1:exon

XP_038624026.1
type: Protein
SIO_000068: ncbiprotein

position:1955043:1
position: 1955043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1972001:1
position: 1972001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1955043-1955129:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1957319-1957509:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1967661-1967846:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1968747-1968944:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1969737-1969901:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1970586-1971006:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1971912-1972001:1:exon

LOC119946682
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: LOC119946682
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase MYLIP isoform X2
translation: MLCYVTRPDAVLMEVEVEAKANGEDCLNQVCRKLGIIEVDYFGLQFTGSKGENLWLNLRNRISQQLDGLAPYRLKLRVKFFVEPHLILQEQTRHMFFLHIKEDLLAGNLQCSSEHADELSALLAQSKFGDYIQNTAKYSYEELCAKELSSAALDSITTKHKELEGTSQASAEYQVLQIVSAVENYGVEWHSVRDSEGQKLLIGVGPKGISICKDDFSPINRCDTVTSAVMMQYSRDLKGHLASLFLNENINLGKKYVFDIKRTSKEVYDHARRMLYNAEVVDLVPWRGPSPLSSPLKSSENGRNCGSCEGLSCQQTKALQDKLQNLKEAMLCMVCCEEEINSTLCPCGHTVCCKKCAGQLQACPVCRSHVEHVQHVYLPTHTSLLNLTVI
SIO_010081: LOC119946682
subclass of: SO_0000673
so part of: LOC119946682
location: join(1955043..1955129,1957319..1957509,1967661..1967846,1968747..1968944,1970586..1971006,1971912..1972001)
location: region:1955043-1972001:1
so has part: feature:1955043-1955129:1:exon
so has part: feature:1957319-1957509:1:exon
so has part: feature:1967661-1967846:1:exon
so has part: feature:1968747-1968944:1:exon
so has part: feature:1970586-1971006:1:exon
so has part: feature:1971912-1972001:1:exon

XP_038624027.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1955043-1955129:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1957319-1957509:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1967661-1967846:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1968747-1968944:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1970586-1971006:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1971912-1972001:1:exon

GMPR
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: GMPR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2004723..2033737
location: region:2004723-2033737:1
so has part: feature:2004723-2033737:1:exon
subclass of: SO_0000010

119946672
type: Gene
SIO_000068: ncbigene

position:2004723:1
position: 2004723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2033737:1
position: 2033737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2004723-2033737:1:exon

GMPR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: GMPR
product: guanosine monophosphate reductase
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_038768088.1
SIO_010081: GMPR
subclass of: SO_0000673
so part of: GMPR
location: join(2004723..2004930,2008443..2008558,2010198..2010281,2012540..2012722,2018700..2018779,2020363..2020471,2029737..2033737)
location: region:2004723-2033737:1
so has part: feature:2004723-2004930:1:exon
so has part: feature:2008443-2008558:1:exon
so has part: feature:2010198-2010281:1:exon
so has part: feature:2012540-2012722:1:exon
so has part: feature:2018700-2018779:1:exon
so has part: feature:2020363-2020471:1:exon
so has part: feature:2029737-2033737:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2004723-2004930:1:exon

position:2004930:1
position: 2004930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2008443-2008558:1:exon

position:2008443:1
position: 2008443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2008558:1
position: 2008558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2010198-2010281:1:exon

position:2010198:1
position: 2010198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2010281:1
position: 2010281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2012540-2012722:1:exon

position:2012540:1
position: 2012540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2012722:1
position: 2012722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2018700-2018779:1:exon

position:2018700:1
position: 2018700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2018779:1
position: 2018779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2020363-2020471:1:exon

position:2020363:1
position: 2020363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2020471:1
position: 2020471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2029737-2033737:1:exon

position:2029737:1
position: 2029737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GMPR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: GMPR
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: GMP reductase 1
translation: MPRIETDLKLDFKGVLLRPKRSSLKSRAEVDLECSYTFRNSKQSYXIPIIVANMEMVGTFEMAAMMTHHAMFTAIHKHYSLEDWKTFASDHPECLEHVAVSSSSGQSDMEWMERTSSVLEAIPDIKYICLDIASGYSEHFVAFVKEVWVKFPSHTIMAGNVVTGEMVEELILSGADIIKVGIGPGSVCTTRHKTGVGYPQLSAVIECADSTHGLKGHIISKRKKRSHLDD
SIO_010081: GMPR
subclass of: SO_0000673
so part of: GMPR
location: join(2004844..2004930,2008443..2008558,2010198..2010281,2012540..2012722,2018700..2018779,2020363..2020471,2029737..2029769)
location: region:2004844-2029769:1
so has part: feature:2004844-2004930:1:exon
so has part: feature:2008443-2008558:1:exon
so has part: feature:2010198-2010281:1:exon
so has part: feature:2012540-2012722:1:exon
so has part: feature:2018700-2018779:1:exon
so has part: feature:2020363-2020471:1:exon
so has part: feature:2029737-2029769:1:exon

XP_038624016.1
type: Protein
SIO_000068: ncbiprotein

position:2004844:1
position: 2004844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2029769:1
position: 2029769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2004844-2004930:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2008443-2008558:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2010198-2010281:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2012540-2012722:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2018700-2018779:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2020363-2020471:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2029737-2029769:1:exon

EQTN
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: EQTN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2431300..2441456)
location: region:2431300-2441456:-1
so has part: feature:2431300-2441456:-1:exon
subclass of: SO_0000010

119946659
type: Gene
SIO_000068: ncbigene

position:2431300:-1
position: 2431300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2441456:-1
position: 2441456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2431300-2441456:-1:exon

EQTN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: EQTN
product: equatorin
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_038768077.1
SIO_010081: EQTN
subclass of: SO_0000673
so part of: EQTN
location: complement(join(2431300..2431456,2435854..2436007,2437288..2437374,2441304..2441456))
location: region:2431300-2441456:-1
so has part: feature:2441304-2441456:-1:exon
so has part: feature:2437288-2437374:-1:exon
so has part: feature:2435854-2436007:-1:exon
so has part: feature:2431300-2431456:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2441304-2441456:-1:exon

position:2441304:-1
position: 2441304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2437288-2437374:-1:exon

position:2437288:-1
position: 2437288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2437374:-1
position: 2437374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2435854-2436007:-1:exon

position:2435854:-1
position: 2435854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2436007:-1
position: 2436007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2431300-2431456:-1:exon

position:2431456:-1
position: 2431456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

EQTN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: EQTN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: equatorin
translation: MNLPSLIFIFLFILLGTTESTTTLKDLKESSKELEERMSEGKISHRSAVYRARPSSDLHTEIDSARAKQEDYKLKLLLIVTVMIFMLSLFLASVCLGLFCRLKKMAIPNDTSDQVQDIRPDLAHLSYFKPLKDVSDTSFSRTNSSEWSGPPVLMQQK
SIO_010081: EQTN
subclass of: SO_0000673
so part of: EQTN
location: complement(join(2431300..2431456,2435854..2436007,2437288..2437374,2441304..2441379))
location: region:2431300-2441379:-1
so has part: feature:2441304-2441379:-1:exon
so has part: feature:2437288-2437374:-1:exon
so has part: feature:2435854-2436007:-1:exon
so has part: feature:2431300-2431456:-1:exon

XP_038624005.1
type: Protein
SIO_000068: ncbiprotein

position:2441379:-1
position: 2441379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2441304-2441379:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2437288-2437374:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2435854-2436007:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2431300-2431456:-1:exon

MYLK4
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: MYLK4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2442138..2462309)
location: region:2442138-2462309:-1
so has part: feature:2442138-2462309:-1:exon
subclass of: SO_0000010

119946660
type: Gene
SIO_000068: ncbigene

position:2442138:-1
position: 2442138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2462309:-1
position: 2462309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2442138-2462309:-1:exon

MYLK4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: MYLK4
product: myosin light chain kinase family member 4
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 12% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038768079.1
SIO_010081: MYLK4
subclass of: SO_0000673
so part of: MYLK4
location: complement(join(2442138..2442157,2444297..2444499,2445715..2445842,2451679..2451749,2454646..2454787,2457668..2457773,2457836..2457933,2458733..2458835,2462300..2462309))
location: region:2442138-2462309:-1
so has part: feature:2462300-2462309:-1:exon
so has part: feature:2458733-2458835:-1:exon
so has part: feature:2457836-2457933:-1:exon
so has part: feature:2457668-2457773:-1:exon
so has part: feature:2454646-2454787:-1:exon
so has part: feature:2451679-2451749:-1:exon
so has part: feature:2445715-2445842:-1:exon
so has part: feature:2444297-2444499:-1:exon
so has part: feature:2442138-2442157:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2462300-2462309:-1:exon

position:2462300:-1
position: 2462300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2458733-2458835:-1:exon

position:2458733:-1
position: 2458733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2458835:-1
position: 2458835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2457836-2457933:-1:exon

position:2457836:-1
position: 2457836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2457933:-1
position: 2457933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2457668-2457773:-1:exon

position:2457668:-1
position: 2457668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2457773:-1
position: 2457773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2454646-2454787:-1:exon

position:2454646:-1
position: 2454646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2454787:-1
position: 2454787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2451679-2451749:-1:exon

position:2451679:-1
position: 2451679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2451749:-1
position: 2451749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2445715-2445842:-1:exon

position:2445715:-1
position: 2445715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2445842:-1
position: 2445842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2444297-2444499:-1:exon

position:2444297:-1
position: 2444297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2444499:-1
position: 2444499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2442138-2442157:-1:exon

position:2442157:-1
position: 2442157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MYLK4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: MYLK4
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; substituted 4 bases at 4 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(2457766..2457768),aa:OTHER)
transl except: (pos:complement(2457742..2457744),aa:OTHER)
transl except: (pos:complement(2457730..2457732),aa:OTHER)
transl except: (pos:complement(2454703..2454705),aa:OTHER)
product: LOW QUALITY PROTEIN: myosin light chain kinase family member 4
translation: MASYNPTPQAPFDHKIVISKKEMISNLYSVSRTKILGGGCFGQVDKCEEKASGLKLAAKIIKTRGAKEKVNPXNVTSFPGXCEEXNIIQLYNAFESKNDIALVMEYVDGGELFDRIINENYNLTQLYTIVFIKXIWKGVKYMHQMYILHLDLKPENILCVNRDAKQIKLIDFGLVRKYIPREKLKVNFGTPEFLAPEVVSYDFVSFPTDTWXIGVMTHMLLSRLSSFLGEDDAETLNNILACRWNLEDEEFQNISEEAKEFISMLLIEFYNLEQNIRNTSVSYLLSFYVFLCV
SIO_010081: MYLK4
subclass of: SO_0000673
so part of: MYLK4
location: complement(join(2442138..2442157,2444297..2444499,2445715..2445842,2451679..2451749,2454646..2454787,2457668..2457773,2457836..2457933,2458733..2458835,2462300..2462309))
location: region:2442138-2462309:-1
so has part: feature:2462300-2462309:-1:exon
so has part: feature:2458733-2458835:-1:exon
so has part: feature:2457836-2457933:-1:exon
so has part: feature:2457668-2457773:-1:exon
so has part: feature:2454646-2454787:-1:exon
so has part: feature:2451679-2451749:-1:exon
so has part: feature:2445715-2445842:-1:exon
so has part: feature:2444297-2444499:-1:exon
so has part: feature:2442138-2442157:-1:exon

XP_038624007.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2462300-2462309:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2458733-2458835:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2457836-2457933:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2457668-2457773:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2454646-2454787:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2451679-2451749:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2445715-2445842:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2444297-2444499:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2442138-2442157:-1:exon

LOC119946694
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946694
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2515945..2546746
location: region:2515945-2546746:1
so has part: feature:2515945-2546746:1:exon
subclass of: SO_0000010

119946694
type: Gene
SIO_000068: ncbigene

position:2515945:1
position: 2515945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2546746:1
position: 2546746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2515945-2546746:1:exon

LOC119946694
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: LOC119946694
product: translocon-associated protein subunit alpha-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_038768108.1
SIO_010081: LOC119946694
subclass of: SO_0000673
so part of: LOC119946694
location: join(2515945..2516063,2526780..2526892,2537323..2537410,2537739..2538001,2540101..2540177,2540584..2540662,2541793..2541886,2542341..2542355,2545212..2546746)
location: region:2515945-2546746:1
so has part: feature:2515945-2516063:1:exon
so has part: feature:2526780-2526892:1:exon
so has part: feature:2537323-2537410:1:exon
so has part: feature:2537739-2538001:1:exon
so has part: feature:2540101-2540177:1:exon
so has part: feature:2540584-2540662:1:exon
so has part: feature:2541793-2541886:1:exon
so has part: feature:2542341-2542355:1:exon
so has part: feature:2545212-2546746:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2515945-2516063:1:exon

position:2516063:1
position: 2516063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2526780-2526892:1:exon

position:2526780:1
position: 2526780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2526892:1
position: 2526892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2537323-2537410:1:exon

position:2537323:1
position: 2537323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2537410:1
position: 2537410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2537739-2538001:1:exon

position:2537739:1
position: 2537739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2538001:1
position: 2538001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2540101-2540177:1:exon

position:2540101:1
position: 2540101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2540177:1
position: 2540177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2540584-2540662:1:exon

position:2540584:1
position: 2540584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2540662:1
position: 2540662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2541793-2541886:1:exon

position:2541793:1
position: 2541793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2541886:1
position: 2541886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2542341-2542355:1:exon

position:2542341:1
position: 2542341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2542355:1
position: 2542355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2545212-2546746:1:exon

position:2545212:1
position: 2545212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC119946694
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: LOC119946694
product: translocon-associated protein subunit alpha-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_038768109.1
SIO_010081: LOC119946694
subclass of: SO_0000673
so part of: LOC119946694
location: join(2515946..2516063,2526780..2526892,2537323..2537410,2537739..2538001,2540101..2540177,2540584..2540662,2541793..2541886,2545212..2546746)
location: region:2515946-2546746:1
so has part: feature:2515946-2516063:1:exon
so has part: feature:2526780-2526892:1:exon
so has part: feature:2537323-2537410:1:exon
so has part: feature:2537739-2538001:1:exon
so has part: feature:2540101-2540177:1:exon
so has part: feature:2540584-2540662:1:exon
so has part: feature:2541793-2541886:1:exon
so has part: feature:2545212-2546746:1:exon

position:2515946:1
position: 2515946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2515946-2516063:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2526780-2526892:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2537323-2537410:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2537739-2538001:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2540101-2540177:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2540584-2540662:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2541793-2541886:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2545212-2546746:1:exon

LOC119946694
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: LOC119946694
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: translocon-associated protein subunit alpha-like isoform X1
translation: MRPLPRLLLLVLLAVPATVLLGGGAGGTLVLAQDSTEDEEAVEGTVVEDEDDEAEIEEDEPTDLAEDKEEEDLFGEPKASSNADTTILFVKGEDFPANSIVKFLVGFTNKGSEDFVVESLDASFRYPQDYQFFIQNFTALLLNTVVPSQKQATFEYSFIPAEPMGGRPFGLVINLIYKDINGNVFQDAVFNQTVTIVEKEDGLDGETIFMYIFLAGLGLLIIVGLHQLLESRKRKRPVQQVEMGSSNQNDVDMSWIPQETLNQIMHSRRDKASPRRLPRKRVQKRAVGSDE
SIO_010081: LOC119946694
subclass of: SO_0000673
so part of: LOC119946694
location: join(2515985..2516063,2526780..2526892,2537323..2537410,2537739..2538001,2540101..2540177,2540584..2540662,2541793..2541886,2542341..2542355,2545212..2545279)
location: region:2515985-2545279:1
so has part: feature:2515985-2516063:1:exon
so has part: feature:2526780-2526892:1:exon
so has part: feature:2537323-2537410:1:exon
so has part: feature:2537739-2538001:1:exon
so has part: feature:2540101-2540177:1:exon
so has part: feature:2540584-2540662:1:exon
so has part: feature:2541793-2541886:1:exon
so has part: feature:2542341-2542355:1:exon
so has part: feature:2545212-2545279:1:exon

XP_038624036.1
type: Protein
SIO_000068: ncbiprotein

position:2515985:1
position: 2515985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2545279:1
position: 2545279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2515985-2516063:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2526780-2526892:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2537323-2537410:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2537739-2538001:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2540101-2540177:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2540584-2540662:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2541793-2541886:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2542341-2542355:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2545212-2545279:1:exon

LOC119946694
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: LOC119946694
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: translocon-associated protein subunit alpha-like isoform X2
translation: MRPLPRLLLLVLLAVPATVLLGGGAGGTLVLAQDSTEDEEAVEGTVVEDEDDEAEIEEDEPTDLAEDKEEEDLFGEPKASSNADTTILFVKGEDFPANSIVKFLVGFTNKGSEDFVVESLDASFRYPQDYQFFIQNFTALLLNTVVPSQKQATFEYSFIPAEPMGGRPFGLVINLIYKDINGNVFQDAVFNQTVTIVEKEDGLDGETIFMYIFLAGLGLLIIVGLHQLLESRKRKRPVQQVEMGSSNQNDVDMSWIPQETLNQINKASPRRLPRKRVQKRAVGSDE
SIO_010081: LOC119946694
subclass of: SO_0000673
so part of: LOC119946694
location: join(2515985..2516063,2526780..2526892,2537323..2537410,2537739..2538001,2540101..2540177,2540584..2540662,2541793..2541886,2545212..2545279)
location: region:2515985-2545279:1
so has part: feature:2515985-2516063:1:exon
so has part: feature:2526780-2526892:1:exon
so has part: feature:2537323-2537410:1:exon
so has part: feature:2537739-2538001:1:exon
so has part: feature:2540101-2540177:1:exon
so has part: feature:2540584-2540662:1:exon
so has part: feature:2541793-2541886:1:exon
so has part: feature:2545212-2545279:1:exon

XP_038624037.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2515985-2516063:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2526780-2526892:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2537323-2537410:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2537739-2538001:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2540101-2540177:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2540584-2540662:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2541793-2541886:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2545212-2545279:1:exon

LOC119946690
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946690
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2558998..2808259)
location: region:2558998-2808259:-1
so has part: feature:2558998-2808259:-1:exon
subclass of: SO_0000010

119946690
type: Gene
SIO_000068: ncbigene

position:2558998:-1
position: 2558998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2808259:-1
position: 2808259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2558998-2808259:-1:exon

LOC119946690
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: LOC119946690
product: ras-responsive element-binding protein 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_038768104.1
SIO_010081: LOC119946690
subclass of: SO_0000673
so part of: LOC119946690
location: complement(join(2558998..2560270,2564148..2564993,2601938..2604848,2616415..2616604,2647616..2647752,2649406..2649547,2672732..2672895,2676966..2677055,2684867..2685075,2706176..2706299,2807498..2807710,2807998..2808259))
location: region:2558998-2808259:-1
so has part: feature:2807998-2808259:-1:exon
so has part: feature:2807498-2807710:-1:exon
so has part: feature:2706176-2706299:-1:exon
so has part: feature:2684867-2685075:-1:exon
so has part: feature:2676966-2677055:-1:exon
so has part: feature:2672732-2672895:-1:exon
so has part: feature:2649406-2649547:-1:exon
so has part: feature:2647616-2647752:-1:exon
so has part: feature:2616415-2616604:-1:exon
so has part: feature:2601938-2604848:-1:exon
so has part: feature:2564148-2564993:-1:exon
so has part: feature:2558998-2560270:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2807998-2808259:-1:exon

position:2807998:-1
position: 2807998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2807498-2807710:-1:exon

position:2807498:-1
position: 2807498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2807710:-1
position: 2807710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2706176-2706299:-1:exon

position:2706176:-1
position: 2706176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2706299:-1
position: 2706299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2684867-2685075:-1:exon

position:2684867:-1
position: 2684867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2685075:-1
position: 2685075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2676966-2677055:-1:exon

position:2676966:-1
position: 2676966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2677055:-1
position: 2677055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2672732-2672895:-1:exon

position:2672732:-1
position: 2672732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2672895:-1
position: 2672895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2649406-2649547:-1:exon

position:2649406:-1
position: 2649406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2649547:-1
position: 2649547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2647616-2647752:-1:exon

position:2647616:-1
position: 2647616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2647752:-1
position: 2647752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2616415-2616604:-1:exon

position:2616415:-1
position: 2616415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2616604:-1
position: 2616604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2601938-2604848:-1:exon

position:2601938:-1
position: 2601938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2604848:-1
position: 2604848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2564148-2564993:-1:exon

position:2564148:-1
position: 2564148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2564993:-1
position: 2564993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2558998-2560270:-1:exon

position:2560270:-1
position: 2560270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119946690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: LOC119946690
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ras-responsive element-binding protein 1-like
translation: MMSAVMSMGRVAENGGNSQNIKSPAKSSGLNRIGRRNQETKEEKSSYTCPLCEKICTTQHQLTMHIRQHNSDTGGTDHACSICEKSLSSASSLDRHMLVHSGERPYKCSVCGQSFTTNGNMHRHMKIHEKDPNSTANTVTPSPLKCRRLTSKRKLSQEAEAEKVLTSAKKVVGRSPSGETEKRANEVFHCPVCFKEFVCKYGLDTHMETHLDNSLRCEVCCITFRTHRGLLRHNAIIHKQLPLDPTGKPFIQNNPSIPAGFHDLGFTDFSCRKFPHISQVWCETNLRRCISECHRFICESCNKAFPMLSALTLHNHTHVGEQGNDKLKRQPNPTVVESPDQNIFMASLGLQSTKDIQPTPQESSTSVGIRALWLETQVSHLPQDLDSPALLSMSALDPSCLGNSLMVIPPTKEAMKPLSLQPFQNGFIIQPDSAIVVKPISSESAIELADIQQILKMASAIPPQISLPPLYKAPPAPMQSIFKHMPPLKPKPLVTPRTVVATSTPPPLISAQQASLGCISPSFPPPPLIKNTVEATSSSLLQSQLGAQPQAAVQLFFQPHSEAPGQPEVKAQLEQDCIIEALLPLNMEAKIKQEVMEGDLKAIIAGVTSKKTQTTRKVLYPCRFCDQVFTFSGVLRAHIRSHLGISPYQCNICDYIAADKAALIRHLRTHSGERPYICKICHYPFTIKANCERHLRKKHLKVTRKDIEKNIEYISSNASEMLNSFCSLDTVCRLCGEDLKHYRALRIHMRNHSGGCQKGHKPFKCKECSTAFSAKHSCVHHILKQHLYVPEYEIENYIMTVDHREGRSQEGPLPNSSSSLSYSSSSSCSSSNSTSSSSLPHKGSGRGTCGVLSPLAAVLEPQNGFLCRGPPPSHISIKLEPASNFPPDFSEPLDFSQKSKDPSLVHMKQENPSIFVPSSLAPYDYLMEPIDLSIPKGFRHDIDGSLVSEEAWNPDPGPGGSDPPIGCSPPCPNLSVIFGSSGSLEKPAAAATTVPVLQHLPQLLKGPLHLTVPIISPAILSNTALLRPLRPKPPPPLLPKPSIAKELPPLASIAQIISSVSLAPALLKTEVVDRGFSLTNNSLRLEKPGVTKPKGAPATAAILKEPGDLPLPRDSPGAASPEQGLASSFKKRGRKRGTKNQARAIGSSVDLESSGEFASIEKMLASTNTNKFSPFLQPTDDHVKEEAVTAAAADWKRMSNDDQDGPEGKQQQRGKQNPNTNCIQKVTCPFCPRVFSWASSLQRHVLTHTDSQSDLEMPAKGNGVLDLTSRERQPGTVAVLSHEEEDWSADGQEKQQADSPEEEGVGNKEEEEEDEEEEKEKEKGESKEGEEEEKEEGLEEKDEDDSVSNKSLDLSFASKLMDFKLTDSNQSLGGSGLSSQNEKKYACDICGKSVKFTTSLSCHKKSQIHEHRKNEKTSEDESRSGPEGTSDTPSGDVEPEQEENPVNLKLVVSPEVGKAPPGKKNEESESGSDGENMVERKSSEKSDDDKKQKTNGAKSVSKADKRKKFCTVCNKRFWSLQDLTRHMRSHTGERPYKCQTCERTFTLKHSLVRHQRIHQKVKNTRYQSKSSDKEERSQNDSENESAHSGANPISENEGDLNLVLGSHLAITQSRRESLTRAFKDTGHKEESAGEGMAGVGLAEPSKNT
SIO_010081: LOC119946690
subclass of: SO_0000673
so part of: LOC119946690
location: complement(join(2559918..2560270,2564148..2564993,2601938..2604848,2616415..2616604,2647616..2647752,2649406..2649547,2672732..2672895,2676966..2677055,2684867..2684980))
location: region:2559918-2684980:-1
so has part: feature:2684867-2684980:-1:exon
so has part: feature:2676966-2677055:-1:exon
so has part: feature:2672732-2672895:-1:exon
so has part: feature:2649406-2649547:-1:exon
so has part: feature:2647616-2647752:-1:exon
so has part: feature:2616415-2616604:-1:exon
so has part: feature:2601938-2604848:-1:exon
so has part: feature:2564148-2564993:-1:exon
so has part: feature:2559918-2560270:-1:exon

XP_038624032.1
type: Protein
SIO_000068: ncbiprotein

position:2559918:-1
position: 2559918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2684980:-1
position: 2684980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2684867-2684980:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2676966-2677055:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2672732-2672895:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2649406-2649547:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2647616-2647752:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2616415-2616604:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2601938-2604848:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2564148-2564993:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2559918-2560270:-1:exon

LOC119946661
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946661
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(2997749..2998275)
location: region:2997749-2998275:-1
so has part: feature:2997749-2998275:-1:exon

119946661
type: Gene
SIO_000068: ncbigene

position:2997749:-1
position: 2997749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2998275:-1
position: 2998275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2997749-2998275:-1:exon

LOC119946661
type: Exon
subclass of: SO_0000147
RO_0002162: 9261
gene: LOC119946661
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC119946661
subclass of: SO_0000673
so part of: LOC119946661
location: complement(2997749..2998275)
location: region:2997749-2998275:-1
so has part: feature:2997749-2998275:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2997749-2998275:-1:exon

LOC119946662
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946662
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3062748..3100856
location: region:3062748-3100856:1
so has part: feature:3062748-3100856:1:exon
subclass of: SO_0000010

119946662
type: Gene
SIO_000068: ncbigene

position:3062748:1
position: 3062748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3100856:1
position: 3100856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3062748-3100856:1:exon

LOC119946662
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: LOC119946662
product: ribonuclease P protein subunit p40-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 10% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038768080.1
SIO_010081: LOC119946662
subclass of: SO_0000673
so part of: LOC119946662
location: join(3062748..3062858,3064377..3064395,3068380..3068628,3082026..3082172,3088491..3088598,3088738..3088799,3100441..3100639,3100718..3100856)
location: region:3062748-3100856:1
so has part: feature:3062748-3062858:1:exon
so has part: feature:3064377-3064395:1:exon
so has part: feature:3068380-3068628:1:exon
so has part: feature:3082026-3082172:1:exon
so has part: feature:3088491-3088598:1:exon
so has part: feature:3088738-3088799:1:exon
so has part: feature:3100441-3100639:1:exon
so has part: feature:3100718-3100856:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3062748-3062858:1:exon

position:3062858:1
position: 3062858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3064377-3064395:1:exon

position:3064377:1
position: 3064377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3064395:1
position: 3064395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3068380-3068628:1:exon

position:3068380:1
position: 3068380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3068628:1
position: 3068628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3082026-3082172:1:exon

position:3082026:1
position: 3082026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3082172:1
position: 3082172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3088491-3088598:1:exon

position:3088491:1
position: 3088491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3088598:1
position: 3088598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3088738-3088799:1:exon

position:3088738:1
position: 3088738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3088799:1
position: 3088799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3100441-3100639:1:exon

position:3100441:1
position: 3100441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3100639:1
position: 3100639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3100718-3100856:1:exon

position:3100718:1
position: 3100718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC119946662
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: LOC119946662
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: ribonuclease P protein subunit p40-like
translation: MERCPDFSACFPNQSLGAPVARFTLIGSQGLNQQTHPTGNLGAVAEGGPTRAGASVSRRLGRKTGRGSPAPTGAGGGEGRGGGGGGLSVLRRLRETPRXLMVCEKSNLGHDESRHQQQVEKHYYNHRYLLIPECTVPPKELKNIIMVTEPYYLVKNLSLYKLVDHEFINTFEKKGQFMLCPYSTNIEQDNTVAVLLTGNIFNLKDAKLLKTFEEVGLQGCLSQYSGRKAMKYSGEESMMMSYFSTYQIQAHQPKIKLSILKDLRCPVLQSNELRGKPEESCSAQEVFDWLGKIFNNTKMNNQSFSLLLPYCCLQPNMEVEKVHLCMITSLILLQTVYLFLEQLL
SIO_010081: LOC119946662
subclass of: SO_0000673
so part of: LOC119946662
location: join(3062748..3062858,3064377..3064395,3068380..3068628,3082026..3082172,3088491..3088598,3088738..3088799,3100441..3100639,3100718..3100856)
location: region:3062748-3100856:1
so has part: feature:3062748-3062858:1:exon
so has part: feature:3064377-3064395:1:exon
so has part: feature:3068380-3068628:1:exon
so has part: feature:3082026-3082172:1:exon
so has part: feature:3088491-3088598:1:exon
so has part: feature:3088738-3088799:1:exon
so has part: feature:3100441-3100639:1:exon
so has part: feature:3100718-3100856:1:exon

XP_038624008.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3062748-3062858:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3064377-3064395:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3068380-3068628:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3082026-3082172:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3088491-3088598:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3088738-3088799:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3100441-3100639:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3100718-3100856:1:exon

LOC119946663
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946663
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 3133534..3134287
location: region:3133534-3134287:1
so has part: feature:3133534-3134287:1:exon

119946663
type: Gene
SIO_000068: ncbigene

position:3133534:1
position: 3133534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3134287:1
position: 3134287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3133534-3134287:1:exon

LOC119946663
type: Exon
subclass of: SO_0000147
RO_0002162: 9261
gene: LOC119946663
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC119946663
subclass of: SO_0000673
so part of: LOC119946663
location: 3133534..3134287
location: region:3133534-3134287:1
so has part: feature:3133534-3134287:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3133534-3134287:1:exon

LOC119946676
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946676
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3148699..3323102)
location: region:3148699-3323102:-1
so has part: feature:3148699-3323102:-1:exon
subclass of: SO_0000010

119946676
type: Gene
SIO_000068: ncbigene

position:3148699:-1
position: 3148699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3323102:-1
position: 3323102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3148699-3323102:-1:exon

LOC119946676
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: LOC119946676
product: chromodomain Y-like protein
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038768092.1
SIO_010081: LOC119946676
subclass of: SO_0000673
so part of: LOC119946676
location: complement(join(3148699..3148996,3150396..3150539,3170678..3170888,3179583..3179755,3181410..3181666,3207133..3207799,3322946..3323102))
location: region:3148699-3323102:-1
so has part: feature:3322946-3323102:-1:exon
so has part: feature:3207133-3207799:-1:exon
so has part: feature:3181410-3181666:-1:exon
so has part: feature:3179583-3179755:-1:exon
so has part: feature:3170678-3170888:-1:exon
so has part: feature:3150396-3150539:-1:exon
so has part: feature:3148699-3148996:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3322946-3323102:-1:exon

position:3322946:-1
position: 3322946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3207133-3207799:-1:exon

position:3207133:-1
position: 3207133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3207799:-1
position: 3207799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3181410-3181666:-1:exon

position:3181410:-1
position: 3181410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3181666:-1
position: 3181666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3179583-3179755:-1:exon

position:3179583:-1
position: 3179583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3179755:-1
position: 3179755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3170678-3170888:-1:exon

position:3170678:-1
position: 3170678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3170888:-1
position: 3170888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3150396-3150539:-1:exon

position:3150396:-1
position: 3150396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3150539:-1
position: 3150539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3148699-3148996:-1:exon

position:3148996:-1
position: 3148996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119946676
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: LOC119946676
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: chromodomain Y-like protein
translation: MASEELYEVKRIVDRRKNKKGKIEYLVRWKGYGSEDDTWEPEQHLVNCEEFIHEFNRCHNEKQKESILTRTNRTSPNNARKQISRSTSSSFSKMSPKSLVIGKDHVSKNNPLFTASQKLRKNTAPSLSNRKTIDFTKSGIKILVPKSPIKSRTAVEDFQNESPDKLDHIDQDQEDSLAPEVAAEKPVGVFLGPGAERARMGSRQRMHSLVPQLPVPVTATIVSTLTINGKGSSTILDALAANGTTNVQTSVSGVTASKRRFMEDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNSLNPEVMKEVQSALNTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKKESTKMAEAIRNFVHTLIQFKKPIIAAVNGPAIGLGASILPLCDVIWANEKAWFQTPYTTFGQSPDGCSSLSFPRIMGLASANEMLFSGRKLTAQEACAKGLVSQVFWPGTFTQEVMVRIKELVTCNSVVLEESKGLVRNVMKMDLEQANERECEVLKKIWGSAQGMDSILKYLQRKIDEF
SIO_010081: LOC119946676
subclass of: SO_0000673
so part of: LOC119946676
location: complement(join(3148838..3148996,3150396..3150539,3170678..3170888,3179583..3179755,3181410..3181666,3207133..3207799,3322946..3322969))
location: region:3148838-3322969:-1
so has part: feature:3322946-3322969:-1:exon
so has part: feature:3207133-3207799:-1:exon
so has part: feature:3181410-3181666:-1:exon
so has part: feature:3179583-3179755:-1:exon
so has part: feature:3170678-3170888:-1:exon
so has part: feature:3150396-3150539:-1:exon
so has part: feature:3148838-3148996:-1:exon

XP_038624020.1
type: Protein
SIO_000068: ncbiprotein

position:3148838:-1
position: 3148838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3322969:-1
position: 3322969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3322946-3322969:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3207133-3207799:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3181410-3181666:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3179583-3179755:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3170678-3170888:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3150396-3150539:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3148838-3148996:-1:exon

LOC119946664
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946664
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3351548..3354627)
location: region:3351548-3354627:-1
so has part: feature:3351548-3354627:-1:exon
subclass of: SO_0000010

119946664
type: Gene
SIO_000068: ncbigene

position:3351548:-1
position: 3351548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3354627:-1
position: 3354627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3351548-3354627:-1:exon

LOC119946664
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: LOC119946664
product: putative protein FAM10A4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 78% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038768081.1
SIO_010081: LOC119946664
subclass of: SO_0000673
so part of: LOC119946664
location: complement(join(3351548..3351551,3354236..3354627))
location: region:3351548-3354627:-1
so has part: feature:3354236-3354627:-1:exon
so has part: feature:3351548-3351551:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3354236-3354627:-1:exon

position:3354236:-1
position: 3354236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3351548-3351551:-1:exon

position:3351551:-1
position: 3351551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119946664
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: LOC119946664
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: putative protein FAM10A4
translation: MKPEEQVKEEQPQREGSDLEIDNEGVIEPDTNDPQEMGDEDAEVTDEMMDQANKKKGAAIDALNAGELQKATDLFTDAIKLNPQLAILYAKTASVFVKLQRPNAAIRDCDQAIDINPDSAQPYKWRGKAHR
SIO_010081: LOC119946664
subclass of: SO_0000673
so part of: LOC119946664
location: complement(join(3351548..3351551,3354236..3354627))
location: region:3351548-3354627:-1
so has part: feature:3354236-3354627:-1:exon
so has part: feature:3351548-3351551:-1:exon

XP_038624009.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3354236-3354627:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3351548-3351551:-1:exon

LOC119946684
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946684
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3448432..3475669)
location: region:3448432-3475669:-1
so has part: feature:3448432-3475669:-1:exon
subclass of: SO_0000010

119946684
type: Gene
SIO_000068: ncbigene

position:3448432:-1
position: 3448432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3475669:-1
position: 3475669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3448432-3475669:-1:exon

LOC119946684
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9261
gene: LOC119946684
product: serine/threonine-protein kinase PRP4 homolog, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005456452.1
SIO_010081: LOC119946684
so part of: LOC119946684
location: complement(join(3448432..3448721,3449247..3449989,3450915..3451001,3453211..3453362,3455035..3455149,3460487..3460640,3461384..3461521,3461792..3461939,3462637..3462727,3463120..3463193,3464166..3464376,3464714..3464795,3465783..3465938,3466196..3466372,3469761..3470939,3475589..3475669))
location: region:3448432-3475669:-1
so has part: feature:3475589-3475669:-1:exon
so has part: feature:3469761-3470939:-1:exon
so has part: feature:3466196-3466372:-1:exon
so has part: feature:3465783-3465938:-1:exon
so has part: feature:3464714-3464795:-1:exon
so has part: feature:3464166-3464376:-1:exon
so has part: feature:3463120-3463193:-1:exon
so has part: feature:3462637-3462727:-1:exon
so has part: feature:3461792-3461939:-1:exon
so has part: feature:3461384-3461521:-1:exon
so has part: feature:3460487-3460640:-1:exon
so has part: feature:3455035-3455149:-1:exon
so has part: feature:3453211-3453362:-1:exon
so has part: feature:3450915-3451001:-1:exon
so has part: feature:3449247-3449989:-1:exon
so has part: feature:3448432-3448721:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3475589-3475669:-1:exon

position:3475589:-1
position: 3475589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3469761-3470939:-1:exon

position:3469761:-1
position: 3469761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3470939:-1
position: 3470939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3466196-3466372:-1:exon

position:3466196:-1
position: 3466196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3466372:-1
position: 3466372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3465783-3465938:-1:exon

position:3465783:-1
position: 3465783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3465938:-1
position: 3465938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3464714-3464795:-1:exon

position:3464714:-1
position: 3464714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3464795:-1
position: 3464795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3464166-3464376:-1:exon

position:3464166:-1
position: 3464166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3464376:-1
position: 3464376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3463120-3463193:-1:exon

position:3463120:-1
position: 3463120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3463193:-1
position: 3463193
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3462637-3462727:-1:exon

position:3462637:-1
position: 3462637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3462727:-1
position: 3462727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3461792-3461939:-1:exon

position:3461792:-1
position: 3461792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3461939:-1
position: 3461939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3461384-3461521:-1:exon

position:3461384:-1
position: 3461384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3461521:-1
position: 3461521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3460487-3460640:-1:exon

position:3460487:-1
position: 3460487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3460640:-1
position: 3460640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3455035-3455149:-1:exon

position:3455035:-1
position: 3455035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3455149:-1
position: 3455149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:3453211-3453362:-1:exon

position:3453211:-1
position: 3453211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3453362:-1
position: 3453362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:3450915-3451001:-1:exon

position:3450915:-1
position: 3450915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3451001:-1
position: 3451001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:3449247-3449989:-1:exon

position:3449247:-1
position: 3449247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3449989:-1
position: 3449989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:3448432-3448721:-1:exon

position:3448721:-1
position: 3448721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119946684
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: LOC119946684
product: serine/threonine-protein kinase PRP4 homolog, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_038768100.1
SIO_010081: LOC119946684
subclass of: SO_0000673
so part of: LOC119946684
location: complement(join(3448432..3449989,3450915..3451001,3453211..3453362,3455035..3455149,3460487..3460640,3461384..3461521,3461792..3461939,3462637..3462727,3463120..3463193,3464166..3464376,3464714..3464795,3465783..3465938,3466196..3466372,3469761..3470939,3475589..3475669))
location: region:3448432-3475669:-1
so has part: feature:3475589-3475669:-1:exon
so has part: feature:3469761-3470939:-1:exon
so has part: feature:3466196-3466372:-1:exon
so has part: feature:3465783-3465938:-1:exon
so has part: feature:3464714-3464795:-1:exon
so has part: feature:3464166-3464376:-1:exon
so has part: feature:3463120-3463193:-1:exon
so has part: feature:3462637-3462727:-1:exon
so has part: feature:3461792-3461939:-1:exon
so has part: feature:3461384-3461521:-1:exon
so has part: feature:3460487-3460640:-1:exon
so has part: feature:3455035-3455149:-1:exon
so has part: feature:3453211-3453362:-1:exon
so has part: feature:3450915-3451001:-1:exon
so has part: feature:3448432-3449989:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3475589-3475669:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3469761-3470939:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3466196-3466372:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3465783-3465938:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3464714-3464795:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3464166-3464376:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3463120-3463193:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3462637-3462727:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3461792-3461939:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3461384-3461521:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3460487-3460640:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3455035-3455149:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3453211-3453362:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3450915-3451001:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3448432-3449989:-1:exon

LOC119946684
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: LOC119946684
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase PRP4 homolog
translation: MAAAEPLAPPREPPETEDAVTSGKSINEENGEILEEEQSQNKHSHHKKKKHKHRSKHKKHKHSSEEKDRKHKHKHKHKKHKWKEAIDASNKEGILPAVKRTKVDDSALLEDLEKQRALIKAELDNELMEGKVQSGMGLILQGYESGSEEEGEIHEKGRNGNRPTTRSSNAKGKLELVANKTSSEKRSKSRSKERTRHRSNKKKSKGSGEGIKEKAMQNKSKERKKSRSPSKRIKYQDQTRKSKSPILKRRSQEKIAKAKSPMEEKLKIDKTKSKDCKKSPVVNENKTRDCGKKSKSPTELRSKSKDRKFKRSEAEKEKKLMKSPSKDASSGKENWSPSRRPGHSPKGRSSSPKHPDKLRQSQSPFLKDCRLKQNKSPSCTQSPGIRAKSRSLERKHREPEKKNLSSSRTRLREDILSRRERSKDVSPISRWTPTRRRSSRSPIRRRSRSPLRRSRSPRRRSRSPWRRDRSRRSRSHMRRRSRSRGRQKRRSRSKVKEDKFKGSLSEGMKVEQESSSDENLEDFDVEEEDEEAVIEQRRIQRQAIVQKYKFLAEDSNLSMPSEPSSPQSSTRTRSPSPEDILERVAADVKEYERENVDTFEASVKAKHNLMTVEQNNGSAQKKLLAPDMFTESDDMFAAYFDSARLRAAGIGKDFKENPNLRDNWTDAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDMARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFGSASHVADNDITPYLVSRFYRAPEIIIGKTYDYGIDMWSVGCTLYELYIGKILFPGKTNNHMLKLAMDLKGKMPNKMIRKGVFKDQHFDQNLNFMYIEVDKVTEREKVTVMSTINPTKDLLTDLIGCQRLPEDQRKKVHQLKDLLDQILMLDPAKRISINQALQHTFIQEKI
SIO_010081: LOC119946684
subclass of: SO_0000673
so part of: LOC119946684
location: complement(join(3449786..3449989,3450915..3451001,3453211..3453362,3455035..3455149,3460487..3460640,3461384..3461521,3461792..3461939,3462637..3462727,3463120..3463193,3464166..3464376,3464714..3464795,3465783..3465938,3466196..3466372,3469761..3470939,3475589..3475632))
location: region:3449786-3475632:-1
so has part: feature:3475589-3475632:-1:exon
so has part: feature:3469761-3470939:-1:exon
so has part: feature:3466196-3466372:-1:exon
so has part: feature:3465783-3465938:-1:exon
so has part: feature:3464714-3464795:-1:exon
so has part: feature:3464166-3464376:-1:exon
so has part: feature:3463120-3463193:-1:exon
so has part: feature:3462637-3462727:-1:exon
so has part: feature:3461792-3461939:-1:exon
so has part: feature:3461384-3461521:-1:exon
so has part: feature:3460487-3460640:-1:exon
so has part: feature:3455035-3455149:-1:exon
so has part: feature:3453211-3453362:-1:exon
so has part: feature:3450915-3451001:-1:exon
so has part: feature:3449786-3449989:-1:exon

XP_038624028.1
type: Protein
SIO_000068: ncbiprotein

position:3449786:-1
position: 3449786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3475632:-1
position: 3475632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3475589-3475632:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3469761-3470939:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3466196-3466372:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3465783-3465938:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3464714-3464795:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3464166-3464376:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3463120-3463193:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3462637-3462727:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3461792-3461939:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3461384-3461521:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3460487-3460640:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3455035-3455149:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3453211-3453362:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3450915-3451001:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3449786-3449989:-1:exon

SLC22A23
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: SLC22A23
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3536036..3669064
location: region:3536036-3669064:1
so has part: feature:3536036-3669064:1:exon
subclass of: SO_0000010

119946697
type: Gene
SIO_000068: ncbigene

position:3536036:1
position: 3536036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3669064:1
position: 3669064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3536036-3669064:1:exon

SLC22A23
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: SLC22A23
product: solute carrier family 22 member 23
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038768112.1
SIO_010081: SLC22A23
subclass of: SO_0000673
so part of: SLC22A23
location: join(3536036..3537051,3573941..3574044,3588044..3588198,3639119..3639287,3645511..3645638,3653221..3653323,3656577..3656809,3659317..3659349,3660447..3660570,3668075..3669064)
location: region:3536036-3669064:1
so has part: feature:3536036-3537051:1:exon
so has part: feature:3573941-3574044:1:exon
so has part: feature:3588044-3588198:1:exon
so has part: feature:3639119-3639287:1:exon
so has part: feature:3645511-3645638:1:exon
so has part: feature:3653221-3653323:1:exon
so has part: feature:3656577-3656809:1:exon
so has part: feature:3659317-3659349:1:exon
so has part: feature:3660447-3660570:1:exon
so has part: feature:3668075-3669064:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3536036-3537051:1:exon

position:3537051:1
position: 3537051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3573941-3574044:1:exon

position:3573941:1
position: 3573941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3574044:1
position: 3574044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3588044-3588198:1:exon

position:3588044:1
position: 3588044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3588198:1
position: 3588198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3639119-3639287:1:exon

position:3639119:1
position: 3639119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3639287:1
position: 3639287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3645511-3645638:1:exon

position:3645511:1
position: 3645511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3645638:1
position: 3645638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3653221-3653323:1:exon

position:3653221:1
position: 3653221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3653323:1
position: 3653323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3656577-3656809:1:exon

position:3656577:1
position: 3656577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3656809:1
position: 3656809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3659317-3659349:1:exon

position:3659317:1
position: 3659317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3659349:1
position: 3659349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3660447-3660570:1:exon

position:3660447:1
position: 3660447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3660570:1
position: 3660570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3668075-3669064:1:exon

position:3668075:1
position: 3668075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SLC22A23
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: SLC22A23
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:3645554..3645556,aa:OTHER)
product: LOW QUALITY PROTEIN: solute carrier family 22 member 23
translation: MAIDRRREAGGGGRRQPPPGENGSLPPGEAEEAAAAAAAVIPGAAAGVDGGEIQSVPAQSSSAAAPALPGGGGGAAPSALLVDYDASVLPLLGGLGGGYQKTLVLLTWIPALFIGFSQYSDSFLLDQPHYWYRGARQGAGPGAPKLTAVPGNWTGPPPPFSPTPYWGPPPTDGRLPAGDTVPLNPPADDDTAANSSNCQCHHWHYRIRAGFVQHVVSKWDLVYDSAWKVHIAKFSLLVGLIFGHLVTGCIADWFGGRPVLLFSIIFILVFGLTASLSVNVTMFSTLRFFEGFCLAGIILTLFALRIELCPPSRRFMVTMVASFVAMAGQFLMPGLAALCGDWQVLQALIICPFLLMLLYCSIFPESLRWLMATQQXEPAKNLIIHFTHKNRMNTEGDIKGVMPELEKALSRRPKKVCIVKVVGTRNLWKNTVVLCVNSLTGFGIHHCFARSMMGHETKVMILNNFYADYYTMAGIALASCLAMCPFVRFLGRRGGLLLFMILKALASLLQLGLLNLIGKYSHHLDSGMTESIREKFSTTFSIIGMFASHVVGSLSVFFCAEITPMVIRCGGLGLVLASAGFGMMTAPIMDLHNQKGYFLHHVIFACCMLICIICILLLPESKNQNLPENTFNGEHYTRQPLLPHQRGEQPLLPTTSELKDYLDLHDVVAMGDRLPDNTTVNGVRSM
SIO_010081: SLC22A23
subclass of: SO_0000673
so part of: SLC22A23
location: join(3536397..3537051,3573941..3574044,3588044..3588198,3639119..3639287,3645511..3645638,3653221..3653323,3656577..3656809,3659317..3659349,3660447..3660570,3668075..3668432)
location: region:3536397-3668432:1
so has part: feature:3536397-3537051:1:exon
so has part: feature:3573941-3574044:1:exon
so has part: feature:3588044-3588198:1:exon
so has part: feature:3639119-3639287:1:exon
so has part: feature:3645511-3645638:1:exon
so has part: feature:3653221-3653323:1:exon
so has part: feature:3656577-3656809:1:exon
so has part: feature:3659317-3659349:1:exon
so has part: feature:3660447-3660570:1:exon
so has part: feature:3668075-3668432:1:exon

XP_038624040.1
type: Protein
SIO_000068: ncbiprotein

position:3536397:1
position: 3536397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3668432:1
position: 3668432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3536397-3537051:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3573941-3574044:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3588044-3588198:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3639119-3639287:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3645511-3645638:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3653221-3653323:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3656577-3656809:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3659317-3659349:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3660447-3660570:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3668075-3668432:1:exon

PSMG4
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: PSMG4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3673658..3698564)
location: region:3673658-3698564:-1
so has part: feature:3673658-3698564:-1:exon
subclass of: SO_0000010

119946688
type: Gene
SIO_000068: ncbigene

position:3673658:-1
position: 3673658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3698564:-1
position: 3698564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3673658-3698564:-1:exon

PSMG4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: PSMG4
product: proteasome assembly chaperone 4
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_038768103.1
SIO_010081: PSMG4
subclass of: SO_0000673
so part of: PSMG4
location: complement(join(3673658..3673856,3680071..3680144,3698312..3698564))
location: region:3673658-3698564:-1
so has part: feature:3698312-3698564:-1:exon
so has part: feature:3680071-3680144:-1:exon
so has part: feature:3673658-3673856:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3698312-3698564:-1:exon

position:3698312:-1
position: 3698312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3680071-3680144:-1:exon

position:3680071:-1
position: 3680071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3680144:-1
position: 3680144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3673658-3673856:-1:exon

position:3673856:-1
position: 3673856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PSMG4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: PSMG4
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(3680075..3680077),aa:OTHER)
product: LOW QUALITY PROTEIN: proteasome assembly chaperone 4
translation: MEEPPGAGESGRISVHNFSARLWEQLSHFHAMQLTDSLFLWVGAAPSLRNLAVAMCNRYDSIPMSVSLLRDASDSXSNSIAQXLARKTKKQVFVSCNLQNTDCTFTLLIENRIKEEMEAFLKKF
SIO_010081: PSMG4
subclass of: SO_0000673
so part of: PSMG4
location: complement(join(3673735..3673856,3680071..3680144,3698312..3698488))
location: region:3673735-3698488:-1
so has part: feature:3698312-3698488:-1:exon
so has part: feature:3680071-3680144:-1:exon
so has part: feature:3673735-3673856:-1:exon

XP_038624031.1
type: Protein
SIO_000068: ncbiprotein

position:3673735:-1
position: 3673735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3698488:-1
position: 3698488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3698312-3698488:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3680071-3680144:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3673735-3673856:-1:exon

LOC119946685
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946685
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3732716..3737136
location: region:3732716-3737136:1
so has part: feature:3732716-3737136:1:exon
subclass of: SO_0000010

119946685
type: Gene
SIO_000068: ncbigene

position:3732716:1
position: 3732716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3737136:1
position: 3737136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3732716-3737136:1:exon

LOC119946685
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: LOC119946685
product: tubulin beta-2B chain
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 366 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_038768101.1
SIO_010081: LOC119946685
subclass of: SO_0000673
so part of: LOC119946685
location: join(3732716..3732823,3733319..3733427,3735413..3735523,3735842..3737136)
location: region:3732716-3737136:1
so has part: feature:3732716-3732823:1:exon
so has part: feature:3733319-3733427:1:exon
so has part: feature:3735413-3735523:1:exon
so has part: feature:3735842-3737136:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3732716-3732823:1:exon

position:3732823:1
position: 3732823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3733319-3733427:1:exon

position:3733319:1
position: 3733319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3733427:1
position: 3733427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3735413-3735523:1:exon

position:3735413:1
position: 3735413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3735523:1
position: 3735523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3735842-3737136:1:exon

position:3735842:1
position: 3735842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC119946685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: LOC119946685
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tubulin beta-2B chain
translation: MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEEEGEDDA
SIO_010081: LOC119946685
subclass of: SO_0000673
so part of: LOC119946685
location: join(3732767..3732823,3733319..3733427,3735413..3735523,3735842..3736905)
location: region:3732767-3736905:1
so has part: feature:3732767-3732823:1:exon
so has part: feature:3733319-3733427:1:exon
so has part: feature:3735413-3735523:1:exon
so has part: feature:3735842-3736905:1:exon

XP_038624029.1
type: Protein
SIO_000068: ncbiprotein

position:3732767:1
position: 3732767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3736905:1
position: 3736905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3732767-3732823:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3733319-3733427:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3735413-3735523:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3735842-3736905:1:exon

LOC119946689
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946689
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3769802..3783995)
location: region:3769802-3783995:-1
so has part: feature:3769802-3783995:-1:exon
subclass of: SO_0000011

119946689
type: Gene
SIO_000068: ncbigene

position:3769802:-1
position: 3769802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3783995:-1
position: 3783995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3769802-3783995:-1:exon

LOC119946689
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9261
nc RNA class: lncRNA
gene: LOC119946689
product: uncharacterized LOC119946689, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_005456453.1
SIO_010081: LOC119946689
subclass of: SO_0000673
so part of: LOC119946689
location: complement(join(3769802..3769976,3770244..3770387,3783894..3783995))
location: region:3769802-3783995:-1
so has part: feature:3783894-3783995:-1:exon
so has part: feature:3770244-3770387:-1:exon
so has part: feature:3769802-3769976:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3783894-3783995:-1:exon

position:3783894:-1
position: 3783894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3770244-3770387:-1:exon

position:3770244:-1
position: 3770244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3770387:-1
position: 3770387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3769802-3769976:-1:exon

position:3769976:-1
position: 3769976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119946689
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9261
nc RNA class: lncRNA
gene: LOC119946689
product: uncharacterized LOC119946689, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005456454.1
SIO_010081: LOC119946689
subclass of: SO_0000673
so part of: LOC119946689
location: complement(join(3769802..3769976,3770244..3770387,3781994..3782071))
location: region:3769802-3782071:-1
so has part: feature:3781994-3782071:-1:exon
so has part: feature:3770244-3770387:-1:exon
so has part: feature:3769802-3769976:-1:exon

position:3782071:-1
position: 3782071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3781994-3782071:-1:exon

position:3781994:-1
position: 3781994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3770244-3770387:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3769802-3769976:-1:exon

LOC119946686
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946686
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3783652..3787576
location: region:3783652-3787576:1
so has part: feature:3783652-3787576:1:exon
subclass of: SO_0000010

119946686
type: Gene
SIO_000068: ncbigene

position:3783652:1
position: 3783652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3787576:1
position: 3787576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3783652-3787576:1:exon

LOC119946686
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: LOC119946686
product: tubulin beta chain-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_038768102.1
SIO_010081: LOC119946686
subclass of: SO_0000673
so part of: LOC119946686
location: join(3783652..3783777,3785596..3785704,3786043..3786153,3786342..3787576)
location: region:3783652-3787576:1
so has part: feature:3783652-3783777:1:exon
so has part: feature:3785596-3785704:1:exon
so has part: feature:3786043-3786153:1:exon
so has part: feature:3786342-3787576:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3783652-3783777:1:exon

position:3783777:1
position: 3783777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3785596-3785704:1:exon

position:3785596:1
position: 3785596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3785704:1
position: 3785704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3786043-3786153:1:exon

position:3786043:1
position: 3786043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3786153:1
position: 3786153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3786342-3787576:1:exon

position:3786342:1
position: 3786342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC119946686
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: LOC119946686
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tubulin beta chain-like
translation: MNTVSIQLAVTMVTVTCNWRESTFTIMKPLVTNTFREQSWWIWSPARWTRSDLDASARSSDLITLYLSSAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDWIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSNDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFLGQLNTDLRELAVNMVPFPLLHFFMPGFAHLTSHGSQQYRALTVPELMQQMFDSKNTMATCDPHHGRYLTVAAIFRGRVSMKELDEQMLNVQNKNSSYFTEWIPNNVKTAMCDIPPRGLTISATIIGNSTAIQELFKCISEQFIAMFRRKAFLHWYTGEGMDEMEFTEAESNMYDLVSEYQQYQHATANERGSLRRRSGRMMLKEMPAVITPLK
SIO_010081: LOC119946686
subclass of: SO_0000673
so part of: LOC119946686
location: join(3785615..3785704,3786043..3786153,3786342..3787430)
location: region:3785615-3787430:1
so has part: feature:3785615-3785704:1:exon
so has part: feature:3786043-3786153:1:exon
so has part: feature:3786342-3787430:1:exon

XP_038624030.1
type: Protein
SIO_000068: ncbiprotein

position:3785615:1
position: 3785615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3787430:1
position: 3787430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3785615-3785704:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3786043-3786153:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3786342-3787430:1:exon

RIPK1
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: RIPK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3788393..3816956)
location: region:3788393-3816956:-1
so has part: feature:3788393-3816956:-1:exon
subclass of: SO_0000010

119946665
type: Gene
SIO_000068: ncbigene

position:3788393:-1
position: 3788393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3816956:-1
position: 3816956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3788393-3816956:-1:exon

RIPK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: RIPK1
product: receptor interacting serine/threonine kinase 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 34% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038768082.1
SIO_010081: RIPK1
subclass of: SO_0000673
so part of: RIPK1
location: complement(join(3788393..3788420,3794104..3794194,3796112..3796188,3798056..3798269,3801927..3801953,3802206..3802340,3802460..3802624,3807399..3807628,3810223..3810360,3812498..3812672,3814582..3814781,3816951..3816956))
location: region:3788393-3816956:-1
so has part: feature:3816951-3816956:-1:exon
so has part: feature:3814582-3814781:-1:exon
so has part: feature:3812498-3812672:-1:exon
so has part: feature:3810223-3810360:-1:exon
so has part: feature:3807399-3807628:-1:exon
so has part: feature:3802460-3802624:-1:exon
so has part: feature:3802206-3802340:-1:exon
so has part: feature:3801927-3801953:-1:exon
so has part: feature:3798056-3798269:-1:exon
so has part: feature:3796112-3796188:-1:exon
so has part: feature:3794104-3794194:-1:exon
so has part: feature:3788393-3788420:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3816951-3816956:-1:exon

position:3816951:-1
position: 3816951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3814582-3814781:-1:exon

position:3814582:-1
position: 3814582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3814781:-1
position: 3814781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3812498-3812672:-1:exon

position:3812498:-1
position: 3812498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3812672:-1
position: 3812672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3810223-3810360:-1:exon

position:3810223:-1
position: 3810223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3810360:-1
position: 3810360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3807399-3807628:-1:exon

position:3807399:-1
position: 3807399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3807628:-1
position: 3807628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3802460-3802624:-1:exon

position:3802460:-1
position: 3802460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3802624:-1
position: 3802624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3802206-3802340:-1:exon

position:3802206:-1
position: 3802206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3802340:-1
position: 3802340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3801927-3801953:-1:exon

position:3801927:-1
position: 3801927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3801953:-1
position: 3801953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3798056-3798269:-1:exon

position:3798056:-1
position: 3798056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3798269:-1
position: 3798269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3796112-3796188:-1:exon

position:3796112:-1
position: 3796112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3796188:-1
position: 3796188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3794104-3794194:-1:exon

position:3794104:-1
position: 3794104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3794194:-1
position: 3794194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3788393-3788420:-1:exon

position:3788420:-1
position: 3788420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RIPK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: RIPK1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(3810337..3810339),aa:OTHER)
product: LOW QUALITY PROTEIN: receptor-interacting serine/threonine-protein kinase 1
translation: MERQVWGAERLGLMRSTDMSLANLQISSDDLLEKEQLDNGGFGLVSLCFHGSRGLVMLKNVYTSPQHTEYNASLLEEGKIMHKLSHSRLVKLLGFILKDGNYSLVVEYMQKGNLMKVLNSLCDCFLHTSIPLSVXRRAILEIIKEMNYLHGEGVIHQDLKPENILVDDDFHIKIANLXVATFKTWSRLTKEENNRQRKMNSAPEPAAGTLFYMAPEHLSNFNTKTAVKSDVYSFTIVLWPVFANKEPYEHTEQIRVPRGWAVSVGGRGLPSDGAGSGSGLVVLVGGADAEMPVAAPPPATVAPGTLLHQRAGGPVDLMQFAEHGLSAHGLVLLGIAHGSPPPPPNWTAAATHVAKWQKQLQTSGSQIPEGTNAYGKETLEEKDPNESSLCVADAIWGIIGGNRPNMEDIRESCPKEIIDLMEQCWKDPEDRIHQRFSPFYQKHFDKNVETDVINLKKKYSAPDEIVQRMHSLQIDSVPYHASSTPPGFI
SIO_010081: RIPK1
subclass of: SO_0000673
so part of: RIPK1
location: complement(join(3788410..3788420,3794104..3794194,3796112..3796188,3798056..3798269,3801927..3801953,3802206..3802340,3802460..3802624,3807399..3807628,3810223..3810360,3812498..3812672,3814582..3814781,3816951..3816956))
location: region:3788410-3816956:-1
so has part: feature:3816951-3816956:-1:exon
so has part: feature:3814582-3814781:-1:exon
so has part: feature:3812498-3812672:-1:exon
so has part: feature:3810223-3810360:-1:exon
so has part: feature:3807399-3807628:-1:exon
so has part: feature:3802460-3802624:-1:exon
so has part: feature:3802206-3802340:-1:exon
so has part: feature:3801927-3801953:-1:exon
so has part: feature:3798056-3798269:-1:exon
so has part: feature:3796112-3796188:-1:exon
so has part: feature:3794104-3794194:-1:exon
so has part: feature:3788410-3788420:-1:exon

XP_038624010.1
type: Protein
SIO_000068: ncbiprotein

position:3788410:-1
position: 3788410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3816951-3816956:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3814582-3814781:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3812498-3812672:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3810223-3810360:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3807399-3807628:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3802460-3802624:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3802206-3802340:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3801927-3801953:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3798056-3798269:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3796112-3796188:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3794104-3794194:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3788410-3788420:-1:exon

NQO2
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: NQO2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3816958..3822472)
location: region:3816958-3822472:-1
so has part: feature:3816958-3822472:-1:exon
subclass of: SO_0000010

119946666
type: Gene
SIO_000068: ncbigene

position:3816958:-1
position: 3816958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3822472:-1
position: 3822472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3816958-3822472:-1:exon

NQO2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: NQO2
product: N-ribosyldihydronicotinamide:quinone reductase 2
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_038768083.1
SIO_010081: NQO2
subclass of: SO_0000673
so part of: NQO2
location: complement(join(3816958..3816975,3817275..3817388,3818947..3819111,3822303..3822333,3822392..3822472))
location: region:3816958-3822472:-1
so has part: feature:3822392-3822472:-1:exon
so has part: feature:3822303-3822333:-1:exon
so has part: feature:3818947-3819111:-1:exon
so has part: feature:3817275-3817388:-1:exon
so has part: feature:3816958-3816975:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3822392-3822472:-1:exon

position:3822392:-1
position: 3822392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3822303-3822333:-1:exon

position:3822303:-1
position: 3822303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3822333:-1
position: 3822333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3818947-3819111:-1:exon

position:3818947:-1
position: 3818947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3819111:-1
position: 3819111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3817275-3817388:-1:exon

position:3817275:-1
position: 3817275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3817388:-1
position: 3817388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3816958-3816975:-1:exon

position:3816975:-1
position: 3816975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NQO2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: NQO2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(3819020..3819022),aa:OTHER)
product: LOW QUALITY PROTEIN: ribosyldihydronicotinamide dehydrogenase [quinone]
translation: MQLFINEGHSLAQRAAAKQHHLTPEQQLGAFGTCCSGGKNVLIVYAHQEPKSLNGSLKDIAVVILSKXGFQVTVSDLYPMEFDLRAMRKDISGSLHNPESFNYGLXQTGRLASSVVEEQKKAQEADLVIFQVQFQR
SIO_010081: NQO2
subclass of: SO_0000673
so part of: NQO2
location: complement(join(3816958..3816975,3817275..3817388,3818947..3819111,3822303..3822333,3822392..3822472))
location: region:3816958-3822472:-1
so has part: feature:3822392-3822472:-1:exon
so has part: feature:3822303-3822333:-1:exon
so has part: feature:3818947-3819111:-1:exon
so has part: feature:3817275-3817388:-1:exon
so has part: feature:3816958-3816975:-1:exon

XP_038624011.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3822392-3822472:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3822303-3822333:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3818947-3819111:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3817275-3817388:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3816958-3816975:-1:exon

LOC119946703
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946703
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 3876256..3876393
location: region:3876256-3876393:1
so has part: feature:3876256-3876393:1:exon
subclass of: SO_0000578

119946703
type: Gene
SIO_000068: ncbigene

position:3876256:1
position: 3876256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3876393:1
position: 3876393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3876256-3876393:1:exon

LOC119946703
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9261
nc RNA class: snoRNA
gene: LOC119946703
product: small nucleolar RNA SNORA7
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00409
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_005456460.1
SIO_010081: LOC119946703
subclass of: SO_0000673
so part of: LOC119946703
location: 3876256..3876393
location: region:3876256-3876393:1
so has part: feature:3876256-3876393:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3876256-3876393:1:exon

DUSP22
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: DUSP22
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3980274..3992701
location: region:3980274-3992701:1
so has part: feature:3980274-3992701:1:exon
subclass of: SO_0000010

119946668
type: Gene
SIO_000068: ncbigene

position:3980274:1
position: 3980274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3992701:1
position: 3992701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3980274-3992701:1:exon

DUSP22
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: DUSP22
product: dual specificity phosphatase 22
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 47% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038768084.1
SIO_010081: DUSP22
subclass of: SO_0000673
so part of: DUSP22
location: join(3980274..3980491,3988882..3988956,3991380..3991551,3992513..3992701)
location: region:3980274-3992701:1
so has part: feature:3980274-3980491:1:exon
so has part: feature:3988882-3988956:1:exon
so has part: feature:3991380-3991551:1:exon
so has part: feature:3992513-3992701:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3980274-3980491:1:exon

position:3980491:1
position: 3980491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3988882-3988956:1:exon

position:3988882:1
position: 3988882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3988956:1
position: 3988956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3991380-3991551:1:exon

position:3991380:1
position: 3991380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3991551:1
position: 3991551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3992513-3992701:1:exon

position:3992513:1
position: 3992513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DUSP22
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: DUSP22
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dual specificity protein phosphatase 22
translation: MPEVAAKELLVKVRERAGDGEEEKQRCLVGNGNRTSGVTATISSSATKGMAVTTGFLFYSLKMDATAKPGKPWTRHFKENIKFIHVCRLRGESCLVHCLAGVSRSVTLVVAYVMTVNDFGWKDGLHTVWAGRSCATLNVGFPKQLQEFEKNEVQQFQQWLKEAYGESPLRDAEQAISILGKYREQVHAESQQNASRWRWSSFSTPPSLAYGNYKMET
SIO_010081: DUSP22
subclass of: SO_0000673
so part of: DUSP22
location: join(3980274..3980491,3988882..3988956,3991380..3991551,3992513..3992701)
location: region:3980274-3992701:1
so has part: feature:3980274-3980491:1:exon
so has part: feature:3988882-3988956:1:exon
so has part: feature:3991380-3991551:1:exon
so has part: feature:3992513-3992701:1:exon

XP_038624012.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3980274-3980491:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3988882-3988956:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3991380-3991551:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3992513-3992701:1:exon

LOC119946653
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946653
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3997844..3999479
location: region:3997844-3999479:1
so has part: feature:3997844-3999479:1:exon
subclass of: SO_0000011

119946653
type: Gene
SIO_000068: ncbigene

position:3997844:1
position: 3997844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3999479:1
position: 3999479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3997844-3999479:1:exon

LOC119946653
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9261
nc RNA class: lncRNA
gene: LOC119946653
product: uncharacterized LOC119946653
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_005456449.1
SIO_010081: LOC119946653
subclass of: SO_0000673
so part of: LOC119946653
location: join(3997844..3998535,3998859..3999479)
location: region:3997844-3999479:1
so has part: feature:3997844-3998535:1:exon
so has part: feature:3998859-3999479:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3997844-3998535:1:exon

position:3998535:1
position: 3998535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3998859-3999479:1:exon

position:3998859:1
position: 3998859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

IRF4
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: IRF4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4052824..4073311
location: region:4052824-4073311:1
so has part: feature:4052824-4073311:1:exon
subclass of: SO_0000010

119946680
type: Gene
SIO_000068: ncbigene

position:4052824:1
position: 4052824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4073311:1
position: 4073311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4052824-4073311:1:exon

IRF4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: IRF4
product: interferon regulatory factor 4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_038768094.1
SIO_010081: IRF4
subclass of: SO_0000673
so part of: IRF4
location: join(4052824..4053039,4053977..4054163,4054977..4055065,4055718..4055859,4060605..4060712,4063570..4063923,4070139..4070251,4072829..4073311)
location: region:4052824-4073311:1
so has part: feature:4052824-4053039:1:exon
so has part: feature:4053977-4054163:1:exon
so has part: feature:4054977-4055065:1:exon
so has part: feature:4055718-4055859:1:exon
so has part: feature:4060605-4060712:1:exon
so has part: feature:4063570-4063923:1:exon
so has part: feature:4070139-4070251:1:exon
so has part: feature:4072829-4073311:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4052824-4053039:1:exon

position:4053039:1
position: 4053039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4053977-4054163:1:exon

position:4053977:1
position: 4053977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4054163:1
position: 4054163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4054977-4055065:1:exon

position:4054977:1
position: 4054977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4055065:1
position: 4055065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4055718-4055859:1:exon

position:4055718:1
position: 4055718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4055859:1
position: 4055859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4060605-4060712:1:exon

position:4060605:1
position: 4060605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4060712:1
position: 4060712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4063570-4063923:1:exon

position:4063570:1
position: 4063570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4063923:1
position: 4063923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4070139-4070251:1:exon

position:4070139:1
position: 4070139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4070251:1
position: 4070251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4072829-4073311:1:exon

position:4072829:1
position: 4072829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

IRF4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: IRF4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: interferon regulatory factor 4
translation: MNLEGGGGGGECGMSSVSCGNGKLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFREGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVSEGAKKGAKQLNMEDQQIIMSHPYTMTSPYTSIQPQVPNYMMPHDRNWRDYVPEQPHPDIPYQCPSVPYTTRSHQWQGSGCENGCQVTGTFYACAPPELQAPGMPIEPSIRSAEALALSDCRLHICLYYREILVKELTTSSPEGCRISHGQSYEASNMDQVLFPYPEDNAQRKNIEKLLSHLERGVLLWMAPDGLYAKRLCQSRIYWDGPLALCSDRPNKLEREQTCKLFDTQQFLSELQVFAHHGRPLPRFQIALCFGEEFPDPQRQRKLITANVEPLLARQLYYFAQQNSGPFLRGCDLPEIISSQEDYHRSIHHSSIQE
SIO_010081: IRF4
subclass of: SO_0000673
so part of: IRF4
location: join(4052824..4053039,4053977..4054163,4054977..4055065,4055718..4055859,4060605..4060712,4063570..4063923,4070139..4070251,4072829..4072972)
location: region:4052824-4072972:1
so has part: feature:4052824-4053039:1:exon
so has part: feature:4053977-4054163:1:exon
so has part: feature:4054977-4055065:1:exon
so has part: feature:4055718-4055859:1:exon
so has part: feature:4060605-4060712:1:exon
so has part: feature:4063570-4063923:1:exon
so has part: feature:4070139-4070251:1:exon
so has part: feature:4072829-4072972:1:exon

XP_038624022.1
type: Protein
SIO_000068: ncbiprotein

position:4072972:1
position: 4072972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4052824-4053039:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4053977-4054163:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4054977-4055065:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4055718-4055859:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4060605-4060712:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4063570-4063923:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4070139-4070251:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4072829-4072972:1:exon

LOC119946704
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946704
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(4097896..4098032)
location: region:4097896-4098032:-1
so has part: feature:4097896-4098032:-1:exon
subclass of: SO_0000578

119946704
type: Gene
SIO_000068: ncbigene

position:4097896:-1
position: 4097896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4098032:-1
position: 4098032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4097896-4098032:-1:exon

LOC119946704
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9261
nc RNA class: snoRNA
gene: LOC119946704
product: small nucleolar RNA SNORA7
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00409
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_005456461.1
SIO_010081: LOC119946704
subclass of: SO_0000673
so part of: LOC119946704
location: complement(4097896..4098032)
location: region:4097896-4098032:-1
so has part: feature:4097896-4098032:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4097896-4098032:-1:exon

EXOC2
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: EXOC2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4106251..4361088)
location: region:4106251-4361088:-1
so has part: feature:4106251-4361088:-1:exon
subclass of: SO_0000010

119946669
type: Gene
SIO_000068: ncbigene

position:4106251:-1
position: 4106251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4361088:-1
position: 4361088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4106251-4361088:-1:exon

EXOC2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: EXOC2
product: exocyst complex component 2
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 27% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038768085.1
SIO_010081: EXOC2
subclass of: SO_0000673
so part of: EXOC2
location: complement(join(4106251..4106514,4117030..4117161,4117553..4117625,4139037..4139136,4140292..4140346,4140555..4140676,4143974..4144029,4144865..4145024,4148532..4148675,4149768..4149862,4160662..4160702,4173187..4173240,4178741..4178821,4188696..4188798,4195368..4195444,4201411..4201472,4205034..4205093,4207062..4207142,4218777..4218838,4220343..4220464,4220730..4220887,4221122..4221183,4227260..4227388,4229079..4229204,4245143..4245261,4255361..4255463,4256347..4256428,4256519..4256664,4260736..4260816,4268814..4268872,4269777..4269848,4269945..4270058,4274303..4274429,4278774..4278950,4360971..4361088))
location: region:4106251-4361088:-1
so has part: feature:4360971-4361088:-1:exon
so has part: feature:4278774-4278950:-1:exon
so has part: feature:4274303-4274429:-1:exon
so has part: feature:4269945-4270058:-1:exon
so has part: feature:4269777-4269848:-1:exon
so has part: feature:4268814-4268872:-1:exon
so has part: feature:4260736-4260816:-1:exon
so has part: feature:4256519-4256664:-1:exon
so has part: feature:4256347-4256428:-1:exon
so has part: feature:4255361-4255463:-1:exon
so has part: feature:4245143-4245261:-1:exon
so has part: feature:4229079-4229204:-1:exon
so has part: feature:4227260-4227388:-1:exon
so has part: feature:4221122-4221183:-1:exon
so has part: feature:4220730-4220887:-1:exon
so has part: feature:4220343-4220464:-1:exon
so has part: feature:4218777-4218838:-1:exon
so has part: feature:4207062-4207142:-1:exon
so has part: feature:4205034-4205093:-1:exon
so has part: feature:4201411-4201472:-1:exon
so has part: feature:4195368-4195444:-1:exon
so has part: feature:4188696-4188798:-1:exon
so has part: feature:4178741-4178821:-1:exon
so has part: feature:4173187-4173240:-1:exon
so has part: feature:4160662-4160702:-1:exon
so has part: feature:4149768-4149862:-1:exon
so has part: feature:4148532-4148675:-1:exon
so has part: feature:4144865-4145024:-1:exon
so has part: feature:4143974-4144029:-1:exon
so has part: feature:4140555-4140676:-1:exon
so has part: feature:4140292-4140346:-1:exon
so has part: feature:4139037-4139136:-1:exon
so has part: feature:4117553-4117625:-1:exon
so has part: feature:4117030-4117161:-1:exon
so has part: feature:4106251-4106514:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4360971-4361088:-1:exon

position:4360971:-1
position: 4360971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4278774-4278950:-1:exon

position:4278774:-1
position: 4278774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4278950:-1
position: 4278950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4274303-4274429:-1:exon

position:4274303:-1
position: 4274303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4274429:-1
position: 4274429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4269945-4270058:-1:exon

position:4269945:-1
position: 4269945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4270058:-1
position: 4270058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4269777-4269848:-1:exon

position:4269777:-1
position: 4269777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4269848:-1
position: 4269848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4268814-4268872:-1:exon

position:4268814:-1
position: 4268814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4268872:-1
position: 4268872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4260736-4260816:-1:exon

position:4260736:-1
position: 4260736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4260816:-1
position: 4260816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4256519-4256664:-1:exon

position:4256519:-1
position: 4256519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4256664:-1
position: 4256664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4256347-4256428:-1:exon

position:4256347:-1
position: 4256347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4256428:-1
position: 4256428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4255361-4255463:-1:exon

position:4255361:-1
position: 4255361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4255463:-1
position: 4255463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4245143-4245261:-1:exon

position:4245143:-1
position: 4245143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4245261:-1
position: 4245261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4229079-4229204:-1:exon

position:4229079:-1
position: 4229079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4229204:-1
position: 4229204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:4227260-4227388:-1:exon

position:4227260:-1
position: 4227260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4227388:-1
position: 4227388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:4221122-4221183:-1:exon

position:4221122:-1
position: 4221122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4221183:-1
position: 4221183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:4220730-4220887:-1:exon

position:4220730:-1
position: 4220730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4220887:-1
position: 4220887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:4220343-4220464:-1:exon

position:4220343:-1
position: 4220343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4220464:-1
position: 4220464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:4218777-4218838:-1:exon

position:4218777:-1
position: 4218777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4218838:-1
position: 4218838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:4207062-4207142:-1:exon

position:4207062:-1
position: 4207062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4207142:-1
position: 4207142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:4205034-4205093:-1:exon

position:4205034:-1
position: 4205034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4205093:-1
position: 4205093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:4201411-4201472:-1:exon

position:4201411:-1
position: 4201411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4201472:-1
position: 4201472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:4195368-4195444:-1:exon

position:4195368:-1
position: 4195368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4195444:-1
position: 4195444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:4188696-4188798:-1:exon

position:4188696:-1
position: 4188696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4188798:-1
position: 4188798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:4178741-4178821:-1:exon

position:4178741:-1
position: 4178741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4178821:-1
position: 4178821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:4173187-4173240:-1:exon

position:4173187:-1
position: 4173187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4173240:-1
position: 4173240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:4160662-4160702:-1:exon

position:4160662:-1
position: 4160662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4160702:-1
position: 4160702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:4149768-4149862:-1:exon

position:4149768:-1
position: 4149768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4149862:-1
position: 4149862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:4148532-4148675:-1:exon

position:4148532:-1
position: 4148532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4148675:-1
position: 4148675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:4144865-4145024:-1:exon

position:4144865:-1
position: 4144865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4145024:-1
position: 4145024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:4143974-4144029:-1:exon

position:4143974:-1
position: 4143974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4144029:-1
position: 4144029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:4140555-4140676:-1:exon

position:4140555:-1
position: 4140555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4140676:-1
position: 4140676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:4140292-4140346:-1:exon

position:4140292:-1
position: 4140292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4140346:-1
position: 4140346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:4139037-4139136:-1:exon

position:4139037:-1
position: 4139037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4139136:-1
position: 4139136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:4117553-4117625:-1:exon

position:4117553:-1
position: 4117553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4117625:-1
position: 4117625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:4117030-4117161:-1:exon

position:4117030:-1
position: 4117030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4117161:-1
position: 4117161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 35
SIO_000628: feature:4106251-4106514:-1:exon

position:4106514:-1
position: 4106514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

EXOC2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: EXOC2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; substituted 8 bases at 8 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(4361080..4361082),aa:OTHER)
transl except: (pos:complement(4256600..4256602),aa:OTHER)
transl except: (pos:complement(4256522..4256524),aa:OTHER)
transl except: (pos:complement(4256399..4256401),aa:OTHER)
transl except: (pos:complement(4227321..4227323),aa:OTHER)
transl except: (pos:complement(4227306..4227308),aa:OTHER)
transl except: (pos:complement(4220383..4220385),aa:OTHER)
transl except: (pos:complement(4140600..4140602),aa:OTHER)
product: LOW QUALITY PROTEIN: exocyst complex component 2
translation: MSXSHQPPLVTSVSSNEGISWTKVTIRGENLGTGPVNLIGLTVCGHNCLLTAEWMSASKIVCRVGPAKNDMGNIVVTTKSGGKGTSIVSFKLLKLEKISILDQSTIWVDELNYYNVHTDRNKGISPFSLQPANLLGIEIEKSETGREGTLSQLDESLKQLRFLGNTAECLLALHQENLLQSFGDGCITDIINAVISFFYTLYEFLRRVYIWESLKEKWLKLESIHQKLEADEMEKVEGSMTQKLENILNRATTTADTLFQEVLGRKDKADXTRNALNVLQRFKFLFNLPLNIERNIXKGDYDVVINDXEKAKSLFGKTEVQVFKKYYAEVEARIEALRELLLDTLLETPLTLHDQKCYIRYLSSLHADGDPAWQCIGAQHKWIIQLMHNCKEGYVKELKGYPVLHSTILDMDGDARPSSLSHLSQTASLKRGSSFQSGRDDTWRYKLPHQVAFVEKLTKLVLCXLPKFXKLWISYVNGSLYSEVSEMSGHMERSKNIRQRQNYFKKMIQEVMYSLVKLIRGALLPFSLREGELKQFGRWKMTSELSGQCLTHVIPTVRLTSESLTALEIPNDLLQTIQDLILDLXIHFVKITLQHTAEDTRDKSKKEDWIIENEGLTSLPSQFEQCIVHSLQSIKGVRECKSGETNVFKQPKTLEEVCQLSINIMQVFIHCLEQLSTKPDGDIDTTHLILDVSSPDLFGSIHEDFTLSSISGILIVLSNCSYLERHTFLNVAEHFEKHSFQGIKKITQVSMALLKELDERLFENYTELKADQNRASIRVIQSRSYIKNAISGEQNLLAALIAPNSINCLKIFLYPLIVSKLKKAIMFPESLQSLEPKKHYEQNEEFPGEILVPQKEGCRILKRHCNIHIQQMSILLFAANSVILWSQIKLVCYLGHKVERKSSVGLLPLSKDFRSQNGVSSILMERVLVIKYAECASKIVRNYLKEALVNIIAANAEVFTISKDLVPLVLSKIXEAVFDELSXLMQCVSSFSKNGALQSELAGHLGSHLYKVHGAGEFKDIENQTLAIAYQKITSIESRVNRFRNLIFVRPSVREQLETQSPKLHFNHSNVSNLLTELYSQHALCTVGYPPGLKPLLLVPQTYPPDGLHDYSGHQLSPVLREFGLEFEEDKAICEKLVLCLMHRMKDDKLARELIAYKMNKREVRITLELLNAFEHEFGKQEDDHSQERRQAFWAKRHHFHSGTY
SIO_010081: EXOC2
subclass of: SO_0000673
so part of: EXOC2
location: complement(join(4106251..4106514,4117030..4117161,4117553..4117625,4139037..4139136,4140292..4140346,4140555..4140676,4143974..4144029,4144865..4145024,4148532..4148675,4149768..4149862,4160662..4160702,4173187..4173240,4178741..4178821,4188696..4188798,4195368..4195444,4201411..4201472,4205034..4205093,4207062..4207142,4218777..4218838,4220343..4220464,4220730..4220887,4221122..4221183,4227260..4227388,4229079..4229204,4245143..4245261,4255361..4255463,4256347..4256428,4256519..4256664,4260736..4260816,4268814..4268872,4269777..4269848,4269945..4270058,4274303..4274429,4278774..4278950,4360971..4361088))
location: region:4106251-4361088:-1
so has part: feature:4360971-4361088:-1:exon
so has part: feature:4278774-4278950:-1:exon
so has part: feature:4274303-4274429:-1:exon
so has part: feature:4269945-4270058:-1:exon
so has part: feature:4269777-4269848:-1:exon
so has part: feature:4268814-4268872:-1:exon
so has part: feature:4260736-4260816:-1:exon
so has part: feature:4256519-4256664:-1:exon
so has part: feature:4256347-4256428:-1:exon
so has part: feature:4255361-4255463:-1:exon
so has part: feature:4245143-4245261:-1:exon
so has part: feature:4229079-4229204:-1:exon
so has part: feature:4227260-4227388:-1:exon
so has part: feature:4221122-4221183:-1:exon
so has part: feature:4220730-4220887:-1:exon
so has part: feature:4220343-4220464:-1:exon
so has part: feature:4218777-4218838:-1:exon
so has part: feature:4207062-4207142:-1:exon
so has part: feature:4205034-4205093:-1:exon
so has part: feature:4201411-4201472:-1:exon
so has part: feature:4195368-4195444:-1:exon
so has part: feature:4188696-4188798:-1:exon
so has part: feature:4178741-4178821:-1:exon
so has part: feature:4173187-4173240:-1:exon
so has part: feature:4160662-4160702:-1:exon
so has part: feature:4149768-4149862:-1:exon
so has part: feature:4148532-4148675:-1:exon
so has part: feature:4144865-4145024:-1:exon
so has part: feature:4143974-4144029:-1:exon
so has part: feature:4140555-4140676:-1:exon
so has part: feature:4140292-4140346:-1:exon
so has part: feature:4139037-4139136:-1:exon
so has part: feature:4117553-4117625:-1:exon
so has part: feature:4117030-4117161:-1:exon
so has part: feature:4106251-4106514:-1:exon

XP_038624013.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4360971-4361088:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4278774-4278950:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4274303-4274429:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4269945-4270058:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4269777-4269848:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4268814-4268872:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4260736-4260816:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4256519-4256664:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4256347-4256428:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4255361-4255463:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4245143-4245261:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4229079-4229204:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4227260-4227388:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4221122-4221183:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4220730-4220887:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4220343-4220464:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:4218777-4218838:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:4207062-4207142:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:4205034-4205093:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:4201411-4201472:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:4195368-4195444:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:4188696-4188798:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:4178741-4178821:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:4173187-4173240:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:4160662-4160702:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:4149768-4149862:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:4148532-4148675:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:4144865-4145024:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:4143974-4144029:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:4140555-4140676:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:4140292-4140346:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:4139037-4139136:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:4117553-4117625:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:4117030-4117161:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:4106251-4106514:-1:exon

FOXQ1
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: FOXQ1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4561596..4562873
location: region:4561596-4562873:1
so has part: feature:4561596-4562873:1:exon
subclass of: SO_0000010

119946670
type: Gene
SIO_000068: ncbigene

position:4561596:1
position: 4561596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4562873:1
position: 4562873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4561596-4562873:1:exon

FOXQ1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: FOXQ1
product: forkhead box Q1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 8% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038768086.1
SIO_010081: FOXQ1
subclass of: SO_0000673
so part of: FOXQ1
location: 4561596..4562873
location: region:4561596-4562873:1
so has part: feature:4561596-4562873:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4561596-4562873:1:exon

FOXQ1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: FOXQ1
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:4562331..4562333,aa:OTHER)
product: LOW QUALITY PROTEIN: forkhead box protein Q1
translation: MKLDVFAPQANGEAETGGDLEGAGGGGVGSSSPVSGPGVDETGSGGDCAAHCPGSGEGAAAGGNSAGAGAAGVAGGGRTKPYTRRPKPPYSYIALIAMAIRDSARGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDTYWMLNPNSEYTFADGVFRRRRKRLGHKARAAALGPSARPTAEGPLVAGPGPARLLPRPSALAPLPPAPSFPPRCKEEEAGAGASAXFSSSFAIESILSKPFRRGGEPGAKPRPHPPRPCGCCGPPATRHSTRTARPRSLSPPRLSSPEAVEEEGARREAGLSCSYTPKAFNEPQLLEAWRRGAPPAPNTDPCSEPPPEPGHPPGQPQQQQQHHLFLSASLAAAAKVFRGPQAGGGSQLYCPLRLSAASRYGPSAYLTYPVETLLA
SIO_010081: FOXQ1
subclass of: SO_0000673
so part of: FOXQ1
location: 4561596..4562873
location: region:4561596-4562873:1
so has part: feature:4561596-4562873:1:exon

XP_038624014.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4561596-4562873:1:exon

LOC119946671
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946671
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 4594017..4595245
location: region:4594017-4595245:1
so has part: feature:4594017-4595245:1:exon

119946671
type: Gene
SIO_000068: ncbigene

position:4594017:1
position: 4594017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4595245:1
position: 4595245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4594017-4595245:1:exon

LOC119946671
type: Exon
subclass of: SO_0000147
RO_0002162: 9261
gene: LOC119946671
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
pseudo: true
SIO_010081: LOC119946671
subclass of: SO_0000673
so part of: LOC119946671
location: 4594017..4595245
location: region:4594017-4595245:1
so has part: feature:4594017-4595245:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4594017-4595245:1:exon

FOXC1
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: FOXC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4636964..4638799
location: region:4636964-4638799:1
so has part: feature:4636964-4638799:1:exon
subclass of: SO_0000010

119946691
type: Gene
SIO_000068: ncbigene

position:4636964:1
position: 4636964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4638799:1
position: 4638799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4636964-4638799:1:exon

FOXC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: FOXC1
product: forkhead box C1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 44% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038768106.1
SIO_010081: FOXC1
subclass of: SO_0000673
so part of: FOXC1
location: 4636964..4638799
location: region:4636964-4638799:1
so has part: feature:4636964-4638799:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4636964-4638799:1:exon

FOXC1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: FOXC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: forkhead box protein C1
translation: MQARYSVSSPNSLGVVPYLGGEQSYYRAAAAAAGGGYTAMPAPMSLYSDPAHEQYPGGMARAYGPYTPQPQPKDMVKPPYSYIALITMAIQNTPEKKITLNGIYQFIMDRFPFYRDNKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFLRRRRCFKKKDAVKDKEEKDRLHVKEQPHPQHLAPPRQQQQQHYQQQQQQQAEPPGGSVAGGPGPGAPPPPVSIQDIKTENGTCSSPPQAGSPASALVSGSHAAVPKTENPDSGSSSSSSSSSSILLSSGSPSHRTLGLEGSDHPPPQHPHPYPEQQQHQPPPPPPHPGQGFSVDNIMTSMRGSPQGSTGELGPGLLASPAASRTGLPASLSLGAYSPGPDSLYGSPCNQDAAGVASGGGPSPGGPSGGPSSGGGDPGGSGGGGGPSGPGTCNMQAMSLNAAGERAGQLPGGPGGAGGAGVDEPLPDYSLPAAGGGPGGPGGGSSSALGHGGQEAGHHPTAHQGRLASWYLNQAAGDLGHLASAAAAAAAAAAAAAAAAGGGYPAQQQNFHSVREMFEAQRLGLNNSPVNGNSSCQMAFPSSQSLYRTSGAFVYDCSKF
SIO_010081: FOXC1
subclass of: SO_0000673
so part of: FOXC1
location: 4636964..4638781
location: region:4636964-4638781:1
so has part: feature:4636964-4638781:1:exon

XP_038624034.1
type: Protein
SIO_000068: ncbiprotein

position:4638781:1
position: 4638781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4636964-4638781:1:exon

LOC119946678
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946678
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 5261598..5273895
location: region:5261598-5273895:1
so has part: feature:5261598-5273895:1:exon

119946678
type: Gene
SIO_000068: ncbigene

position:5261598:1
position: 5261598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5273895:1
position: 5273895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5261598-5273895:1:exon

LOC119946678
type: Exon
subclass of: SO_0000147
RO_0002162: 9261
gene: LOC119946678
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 19% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC119946678
subclass of: SO_0000673
so part of: LOC119946678
location: 5261598..5263239
location: region:5261598-5263239:1
so has part: feature:5261598-5263239:1:exon

position:5263239:1
position: 5263239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5261598-5263239:1:exon

LOC119946678
type: Exon
subclass of: SO_0000147
RO_0002162: 9261
gene: LOC119946678
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 19% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC119946678
subclass of: SO_0000673
so part of: LOC119946678
location: 5266335..5266497
location: region:5266335-5266497:1
so has part: feature:5266335-5266497:1:exon

position:5266335:1
position: 5266335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5266497:1
position: 5266497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5266335-5266497:1:exon

LOC119946678
type: Exon
subclass of: SO_0000147
RO_0002162: 9261
gene: LOC119946678
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 19% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC119946678
subclass of: SO_0000673
so part of: LOC119946678
location: 5269420..5269498
location: region:5269420-5269498:1
so has part: feature:5269420-5269498:1:exon

position:5269420:1
position: 5269420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5269498:1
position: 5269498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5269420-5269498:1:exon

LOC119946678
type: Exon
subclass of: SO_0000147
RO_0002162: 9261
gene: LOC119946678
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 19% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC119946678
subclass of: SO_0000673
so part of: LOC119946678
location: 5271296..5271354
location: region:5271296-5271354:1
so has part: feature:5271296-5271354:1:exon

position:5271296:1
position: 5271296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5271354:1
position: 5271354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5271296-5271354:1:exon

LOC119946678
type: Exon
subclass of: SO_0000147
RO_0002162: 9261
gene: LOC119946678
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 19% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC119946678
subclass of: SO_0000673
so part of: LOC119946678
location: 5273851..5273895
location: region:5273851-5273895:1
so has part: feature:5273851-5273895:1:exon

position:5273851:1
position: 5273851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5273851-5273895:1:exon

LOC119946700
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: LOC119946700
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(5366283..5366420)
location: region:5366283-5366420:-1
so has part: feature:5366283-5366420:-1:exon
subclass of: SO_0000578

119946700
type: Gene
SIO_000068: ncbigene

position:5366283:-1
position: 5366283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5366420:-1
position: 5366420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5366283-5366420:-1:exon

LOC119946700
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9261
nc RNA class: snoRNA
gene: LOC119946700
product: small nucleolar RNA SNORA7
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00409
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_005456457.1
SIO_010081: LOC119946700
subclass of: SO_0000673
so part of: LOC119946700
location: complement(5366283..5366420)
location: region:5366283-5366420:-1
so has part: feature:5366283-5366420:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5366283-5366420:-1:exon

WRNIP1
type: Gene
subclass of: SO_0000704
RO_0002162: 9261
gene: WRNIP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5481198..5497510
location: region:5481198-5497510:1
so has part: feature:5481198-5497510:1:exon
subclass of: SO_0000010

119946679
type: Gene
SIO_000068: ncbigene

position:5481198:1
position: 5481198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5497510:1
position: 5497510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5481198-5497510:1:exon

WRNIP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9261
gene: WRNIP1
product: WRN helicase interacting protein 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038768093.1
SIO_010081: WRNIP1
subclass of: SO_0000673
so part of: WRNIP1
location: join(5481198..5481273,5481378..5481430,5481997..5482188,5483272..5483507,5492903..5493114,5496585..5497510)
location: region:5481198-5497510:1
so has part: feature:5481198-5481273:1:exon
so has part: feature:5481378-5481430:1:exon
so has part: feature:5481997-5482188:1:exon
so has part: feature:5483272-5483507:1:exon
so has part: feature:5492903-5493114:1:exon
so has part: feature:5496585-5497510:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5481198-5481273:1:exon

position:5481273:1
position: 5481273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5481378-5481430:1:exon

position:5481378:1
position: 5481378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5481430:1
position: 5481430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5481997-5482188:1:exon

position:5481997:1
position: 5481997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5482188:1
position: 5482188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5483272-5483507:1:exon

position:5483272:1
position: 5483272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5483507:1
position: 5483507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5492903-5493114:1:exon

position:5492903:1
position: 5492903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5493114:1
position: 5493114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5496585-5497510:1:exon

position:5496585:1
position: 5496585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

WRNIP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9261
gene: WRNIP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ATPase WRNIP1
translation: MQEKEKKKNVSEGTTLEEIQGSFAKGSEVSLLLLLETDSPWSPTTLAHIIANNSKRNSIRFVTLLAASSKTNDVRDIIKQAQDEKRLFKRKTILFIDEIHHFNKAQQDTFLPHVEHRTVTLIGATTENPSFQVNSALLSCCQVIVLEKLLVQAMEAILLRALGSLGICMVD
SIO_010081: WRNIP1
subclass of: SO_0000673
so part of: WRNIP1
location: join(5481198..5481273,5481378..5481430,5481997..5482188,5483272..5483466)
location: region:5481198-5483466:1
so has part: feature:5481198-5481273:1:exon
so has part: feature:5481378-5481430:1:exon
so has part: feature:5481997-5482188:1:exon
so has part: feature:5483272-5483466:1:exon

XP_038624021.1
type: Protein
SIO_000068: ncbiprotein

position:5483466:1
position: 5483466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5481198-5481273:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5481378-5481430:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5481997-5482188:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5483272-5483466:1:exon