Ornithorhynchus anatinus isolate Pmale09 chromosome Y4, mOrnAna1.pri.v4, whole genome shotgun sequence.
type: Entry
definition: Ornithorhynchus anatinus isolate Pmale09 chromosome Y4, mOrnAna1.pri.v4, whole genome shotgun sequence.
sequence version: NC_053178.1
sequence date: 2021-03-08
sequence: sequence
division: CON
label: NC_053178.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA534073
dblink: SAMN08537700
keyword: WGS
keyword: RefSeq
source: Ornithorhynchus anatinus (platypus)
organism: Ornithorhynchus anatinus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM022558.1.\nAssembly name: mOrnAna1.pri.v4\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2020/11/06. The original whole-genome shotgun project has the\naccession RZJT00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 06-DEC-2019\nAssembly Method :: FALCON v. 5.1.1; FALCON Unzip v. 1.0.2;\n purge_haplotigs v. bit 7.10.2018;\n scaff10X v. git 4.28.2018; Bionano Solve\n DLS v. 3.2.1; Salsa2 HiC v. 2.0;\n smrtanalysis Arrow polishing & gap\n fillingt v. 5.1.0.26412; longranger align\n v. 2.2.2; freebayes v. 1.2.0; gEVAL\n manual curation v. 2019-12-06\nAssembly Name :: mOrnAna1.pri.v4\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 58.8x\nSequencing Technology :: PacBio RSII; 10X Genomics linked reads;\n Bionano Genomics DLS; Dovetail Genomics\n HiC; Arima Genomics\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Ornithorhynchus anatinus Annotation\n Release 105\nAnnotation Version :: 105\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.6\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 1018000
topology: linear
so has quality: SO_0000987
location: 1..1018000
location: region:1-1018000:1
RO_0002162: 9258

NC_053178
type: RefSeq
SIO_000068: refseq

PRJNA534073
type: BioProject
SIO_000068: bioproject

SAMN08537700
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1018000:1
position: 1018000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-1018000:1:source
so part of: sequence
organism: Ornithorhynchus anatinus
mol type: genomic DNA
isolate: Pmale09
chromosome: Y4
sex: male
tissue type: liver; muscle

9258
type: Taxonomy
SIO_000068: taxonomy

LOC100079216
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC100079216
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5143..14977
location: region:5143-14977:1
so has part: feature:5143-14977:1:exon
subclass of: SO_0000010

100079216
type: Gene
SIO_000068: ncbigene

position:5143:1
position: 5143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14977:1
position: 14977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5143-14977:1:exon

LOC100079216
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC100079216
product: serine/threonine-protein phosphatase 1 regulatory subunit 10
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 5 bases in 4 codons; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_029056526.2
SIO_010081: LOC100079216
subclass of: SO_0000673
so part of: LOC100079216
location: join(5143..5264,6040..6126,6623..6758,6925..6976,8060..8137,8300..8470,8942..9047,9165..9277,9517..9617,9770..9917,10027..10174,10316..10562,11713..11788,12007..12204,12330..12440,12870..12972,13168..13603,13957..14977)
location: region:5143-14977:1
so has part: feature:5143-5264:1:exon
so has part: feature:6040-6126:1:exon
so has part: feature:6623-6758:1:exon
so has part: feature:6925-6976:1:exon
so has part: feature:8060-8137:1:exon
so has part: feature:8300-8470:1:exon
so has part: feature:8942-9047:1:exon
so has part: feature:9165-9277:1:exon
so has part: feature:9517-9617:1:exon
so has part: feature:9770-9917:1:exon
so has part: feature:10027-10174:1:exon
so has part: feature:10316-10562:1:exon
so has part: feature:11713-11788:1:exon
so has part: feature:12007-12204:1:exon
so has part: feature:12330-12440:1:exon
so has part: feature:12870-12972:1:exon
so has part: feature:13168-13603:1:exon
so has part: feature:13957-14977:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5143-5264:1:exon

position:5264:1
position: 5264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6040-6126:1:exon

position:6040:1
position: 6040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6126:1
position: 6126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6623-6758:1:exon

position:6623:1
position: 6623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6758:1
position: 6758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6925-6976:1:exon

position:6925:1
position: 6925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6976:1
position: 6976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:8060-8137:1:exon

position:8060:1
position: 8060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8137:1
position: 8137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:8300-8470:1:exon

position:8300:1
position: 8300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8470:1
position: 8470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:8942-9047:1:exon

position:8942:1
position: 8942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9047:1
position: 9047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:9165-9277:1:exon

position:9165:1
position: 9165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9277:1
position: 9277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:9517-9617:1:exon

position:9517:1
position: 9517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9617:1
position: 9617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:9770-9917:1:exon

position:9770:1
position: 9770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9917:1
position: 9917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:10027-10174:1:exon

position:10027:1
position: 10027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10174:1
position: 10174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:10316-10562:1:exon

position:10316:1
position: 10316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10562:1
position: 10562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:11713-11788:1:exon

position:11713:1
position: 11713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11788:1
position: 11788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:12007-12204:1:exon

position:12007:1
position: 12007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12204:1
position: 12204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:12330-12440:1:exon

position:12330:1
position: 12330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12440:1
position: 12440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:12870-12972:1:exon

position:12870:1
position: 12870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12972:1
position: 12972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:13168-13603:1:exon

position:13168:1
position: 13168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13603:1
position: 13603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:13957-14977:1:exon

position:13957:1
position: 13957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100079216
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC100079216
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 5 bases in 4 codons; deleted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:13376..13378,aa:OTHER)
product: LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 1 regulatory subunit 10
translation: MGSGPIHPKKLLKGLDSFLSWNGEVKSEIGISKIFGLMKEARKMVSRCTYLNIVLQARLPSVLAKFIRVGGYKLLNSWLTYSKTTNNGPLLQQILLTLQHLPLTVGHLKQNNTAKLVKQLSKSSENEELRKLASILVSDWMAVIRSQSGTQPAEDKKKRKEERKSRIVLMERHAPEVKAEAQPREAPEKKKEKPKSLRTMAPSHAKFRFTSLELEAPSLVPVKKNASTIVVSDKYNLKPIPLKQQSSSANPGDMVPLPEKKYKPLNITPSTTKEIKVKIIPPQPMEGLGFLDALNSAPVPRIKIKKKKKVLSPTVVKPNLFEGKLSTEPSMAKPSSPDLGSASEPMDTEQPRTPIPPIEVPELTDTDSMDSDSKPTESPGGPAQLTRKGCKRKTXTWPEEGKLCKYFYFELGKMERVNVNKIKDFGEAAKQEMLKDRHAFETAQRLSHDAMEEKLPWLSPRPLSLPPALVSPGSNSQQCFVQAEREKSILQEIFLSKESVPNSPLKPDPESYEPVPPTLIPLDGECSMDEAPYGEELEGSRVEGSPDGVGSSKLPPVLAKLMGSVGAGKSPQGLGGTAAINMQEILTSIMDSPNSHPSEEXLKQPDYSDKIKQLLGSLQGQPQGPGEVANGFPPGCPGGPKGMQHFPPGPGGPMPDEGRRGRGPGGPGVPVGPHLLGPPGPPPRGGDPFWGPPADPMQGGPMCGGPPGPYHWGRGGRGGNEPLPPPLFWGWXGDHLGXGPPNGRGGPGGGMGGGGHXAHNAHIHGHGPLGTRGHDHHVPPLHHHHGHDGPGIGGSHRGHDSSHSHGGDMPSRPICRHFMMKGSCCYENNCAFYHPGVNGPSLS
SIO_010081: LOC100079216
subclass of: SO_0000673
so part of: LOC100079216
location: join(5158..5264,6040..6126,6623..6758,6925..6976,8060..8137,8300..8470,8942..9047,9165..9277,9517..9617,9770..9917,10027..10174,10316..10562,11713..11788,12007..12204,12330..12440,12870..12972,13168..13603,13957..14066)
location: region:5158-14066:1
so has part: feature:5158-5264:1:exon
so has part: feature:6040-6126:1:exon
so has part: feature:6623-6758:1:exon
so has part: feature:6925-6976:1:exon
so has part: feature:8060-8137:1:exon
so has part: feature:8300-8470:1:exon
so has part: feature:8942-9047:1:exon
so has part: feature:9165-9277:1:exon
so has part: feature:9517-9617:1:exon
so has part: feature:9770-9917:1:exon
so has part: feature:10027-10174:1:exon
so has part: feature:10316-10562:1:exon
so has part: feature:11713-11788:1:exon
so has part: feature:12007-12204:1:exon
so has part: feature:12330-12440:1:exon
so has part: feature:12870-12972:1:exon
so has part: feature:13168-13603:1:exon
so has part: feature:13957-14066:1:exon

XP_028912359.1
type: Protein
SIO_000068: ncbiprotein

position:5158:1
position: 5158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14066:1
position: 14066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5158-5264:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6040-6126:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6623-6758:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6925-6976:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8060-8137:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8300-8470:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8942-9047:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9165-9277:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9517-9617:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:9770-9917:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:10027-10174:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:10316-10562:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11713-11788:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:12007-12204:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:12330-12440:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:12870-12972:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:13168-13603:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:13957-14066:1:exon

LOC114808708
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808708
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 43168..51629
location: region:43168-51629:1
so has part: feature:43168-51629:1:exon

114808708
type: Gene
SIO_000068: ncbigene

position:43168:1
position: 43168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51629:1
position: 51629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43168-51629:1:exon

LOC114808708
type: Exon
subclass of: SO_0000147
RO_0002162: 9258
gene: LOC114808708
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 23% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC114808708
subclass of: SO_0000673
so part of: LOC114808708
location: 43168..43532
location: region:43168-43532:1
so has part: feature:43168-43532:1:exon

position:43532:1
position: 43532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43168-43532:1:exon

LOC114808708
type: Exon
subclass of: SO_0000147
RO_0002162: 9258
gene: LOC114808708
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 23% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC114808708
subclass of: SO_0000673
so part of: LOC114808708
location: 44467..44576
location: region:44467-44576:1
so has part: feature:44467-44576:1:exon

position:44467:1
position: 44467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44576:1
position: 44576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44467-44576:1:exon

LOC114808708
type: Exon
subclass of: SO_0000147
RO_0002162: 9258
gene: LOC114808708
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 23% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC114808708
subclass of: SO_0000673
so part of: LOC114808708
location: 45288..45376
location: region:45288-45376:1
so has part: feature:45288-45376:1:exon

position:45288:1
position: 45288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45376:1
position: 45376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45288-45376:1:exon

LOC114808708
type: Exon
subclass of: SO_0000147
RO_0002162: 9258
gene: LOC114808708
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 23% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC114808708
subclass of: SO_0000673
so part of: LOC114808708
location: 48777..48810
location: region:48777-48810:1
so has part: feature:48777-48810:1:exon

position:48777:1
position: 48777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48810:1
position: 48810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48777-48810:1:exon

LOC114808708
type: Exon
subclass of: SO_0000147
RO_0002162: 9258
gene: LOC114808708
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 23% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC114808708
subclass of: SO_0000673
so part of: LOC114808708
location: 51001..51629
location: region:51001-51629:1
so has part: feature:51001-51629:1:exon

position:51001:1
position: 51001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51001-51629:1:exon

LOC114808706
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808706
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(52000..59245)
location: region:52000-59245:-1
so has part: feature:52000-59245:-1:exon
subclass of: SO_0000010

114808706
type: Gene
SIO_000068: ncbigene

position:52000:-1
position: 52000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:59245:-1
position: 59245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52000-59245:-1:exon

LOC114808706
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808706
product: E3 ubiquitin-protein ligase PPP1R11-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XM_029056524.2
SIO_010081: LOC114808706
subclass of: SO_0000673
so part of: LOC114808706
location: complement(join(52000..53577,56938..57046,58920..59245))
location: region:52000-59245:-1
so has part: feature:58920-59245:-1:exon
so has part: feature:56938-57046:-1:exon
so has part: feature:52000-53577:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:58920-59245:-1:exon

position:58920:-1
position: 58920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:56938-57046:-1:exon

position:56938:-1
position: 56938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57046:-1
position: 57046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:52000-53577:-1:exon

position:53577:-1
position: 53577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808706
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808706
product: E3 ubiquitin-protein ligase PPP1R11-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_029056525.2
SIO_010081: LOC114808706
subclass of: SO_0000673
so part of: LOC114808706
location: complement(join(52000..53577,56938..57046,58634..58913))
location: region:52000-58913:-1
so has part: feature:58634-58913:-1:exon
so has part: feature:56938-57046:-1:exon
so has part: feature:52000-53577:-1:exon

position:58913:-1
position: 58913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58634-58913:-1:exon

position:58634:-1
position: 58634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:56938-57046:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:52000-53577:-1:exon

LOC114808706
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808706
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase PPP1R11-like isoform X1
translation: MAEAPAGLSETVTETTVPCTTEPENRSLTIKLRKRKPDKKVEWSSDTVDNEHLGRRSSKCCCIYEKPRVFGESSTESEDEDNEGCGHAHCVRGHRKGQPQCRAPPNLPPDVPQPPGSSQPPSRPVQH
SIO_010081: LOC114808706
subclass of: SO_0000673
so part of: LOC114808706
location: complement(join(53372..53577,56938..57046,58920..58988))
location: region:53372-58988:-1
so has part: feature:58920-58988:-1:exon
so has part: feature:56938-57046:-1:exon
so has part: feature:53372-53577:-1:exon

XP_028912357.1
type: Protein
SIO_000068: ncbiprotein

position:53372:-1
position: 53372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:58988:-1
position: 58988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58920-58988:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:56938-57046:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:53372-53577:-1:exon

LOC114808706
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808706
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase PPP1R11-like isoform X2
translation: MWPLMIVYLIIIITEENRSLTIKLRKRKPDKKVEWSSDTVDNEHLGRRSSKCCCIYEKPRVFGESSTESEDEDNEGCGHAHCVRGHRKGQPQCRAPPNLPPDVPQPPGSSQPPSRPVQH
SIO_010081: LOC114808706
subclass of: SO_0000673
so part of: LOC114808706
location: complement(join(53372..53577,56938..57046,58634..58678))
location: region:53372-58678:-1
so has part: feature:58634-58678:-1:exon
so has part: feature:56938-57046:-1:exon
so has part: feature:53372-53577:-1:exon

XP_028912358.1
type: Protein
SIO_000068: ncbiprotein

position:58678:-1
position: 58678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58634-58678:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:56938-57046:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:53372-53577:-1:exon

LOC114808702
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808702
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(76182..95635)
location: region:76182-95635:-1
so has part: feature:76182-95635:-1:exon
subclass of: SO_0000010

114808702
type: Gene
SIO_000068: ncbigene

position:76182:-1
position: 76182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:95635:-1
position: 95635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:76182-95635:-1:exon

LOC114808702
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808702
product: myelin-oligodendrocyte glycoprotein-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
transcript id: XM_029056522.1
SIO_010081: LOC114808702
subclass of: SO_0000673
so part of: LOC114808702
location: complement(join(76182..76210,76857..76976,78125..78145,78807..78941,80502..80868,82292..82303,95282..95635))
location: region:76182-95635:-1
so has part: feature:95282-95635:-1:exon
so has part: feature:82292-82303:-1:exon
so has part: feature:80502-80868:-1:exon
so has part: feature:78807-78941:-1:exon
so has part: feature:78125-78145:-1:exon
so has part: feature:76857-76976:-1:exon
so has part: feature:76182-76210:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:95282-95635:-1:exon

position:95282:-1
position: 95282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:82292-82303:-1:exon

position:82292:-1
position: 82292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:82303:-1
position: 82303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:80502-80868:-1:exon

position:80502:-1
position: 80502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:80868:-1
position: 80868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:78807-78941:-1:exon

position:78807:-1
position: 78807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:78941:-1
position: 78941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:78125-78145:-1:exon

position:78125:-1
position: 78125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:78145:-1
position: 78145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:76857-76976:-1:exon

position:76857:-1
position: 76857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:76976:-1
position: 76976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:76182-76210:-1:exon

position:76210:-1
position: 76210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808702
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808702
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: myelin-oligodendrocyte glycoprotein-like
translation: MDRAELGKGLVAQLERLSTCPLCGAAFQDPVLLDCDHSFCRRCVGRRWDGQARAGAGLSCPGCGHLCPRRSLRTNVRLDVEVRISCGLRDRLGDAGSRAGRRRGGRIPTMGSQDPQGEILEMQAEQFLVMVPTLSFMAFVGEDVKLPGLLSPEKNVSGMEVGWYRRPFYRVTHMYCHXDQVEEQAPEFLGSTELVKEAISKGQMALQLQMALQLHHVRIISEGGYTCLYXDHSYQEEAAVQLIVEDPFYWINPGMLYLTVVLSILVLQVVVRFGLLCLQWRLTGTLGKEIQNLHRTFDHHFLRVPGWKITLFVVLPILAMITVAMNLCYKWLQCRLAGQFLEELGF
SIO_010081: LOC114808702
subclass of: SO_0000673
so part of: LOC114808702
location: complement(join(76182..76210,76857..76976,78125..78145,78807..78941,80502..80868,82292..82303,95282..95635))
location: region:76182-95635:-1
so has part: feature:95282-95635:-1:exon
so has part: feature:82292-82303:-1:exon
so has part: feature:80502-80868:-1:exon
so has part: feature:78807-78941:-1:exon
so has part: feature:78125-78145:-1:exon
so has part: feature:76857-76976:-1:exon
so has part: feature:76182-76210:-1:exon

XP_028912355.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:95282-95635:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:82292-82303:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:80502-80868:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:78807-78941:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:78125-78145:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:76857-76976:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:76182-76210:-1:exon

LOC114808698
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808698
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(167944..185104)
location: region:167944-185104:-1
so has part: feature:167944-185104:-1:exon
subclass of: SO_0000010

114808698
type: Gene
SIO_000068: ncbigene

position:167944:-1
position: 167944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:185104:-1
position: 185104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:167944-185104:-1:exon

LOC114808698
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808698
product: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_029056519.1
SIO_010081: LOC114808698
subclass of: SO_0000673
so part of: LOC114808698
location: complement(join(167944..170723,185007..185104))
location: region:167944-185104:-1
so has part: feature:185007-185104:-1:exon
so has part: feature:167944-170723:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:185007-185104:-1:exon

position:185007:-1
position: 185007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:167944-170723:-1:exon

position:170723:-1
position: 170723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808698
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808698
product: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_029056518.1
SIO_010081: LOC114808698
subclass of: SO_0000673
so part of: LOC114808698
location: complement(join(167944..170723,184749..184863))
location: region:167944-184863:-1
so has part: feature:184749-184863:-1:exon
so has part: feature:167944-170723:-1:exon

position:184863:-1
position: 184863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:184749-184863:-1:exon

position:184749:-1
position: 184749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:167944-170723:-1:exon

LOC114808698
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808698
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like
translation: MLKKQRTGLVLWGAILFMAWNALLLFFFWTRPSPSGLTPAAPFAKDRASLTREVIRLAQDAEVELERQRGLLQQIREHSALWSRWQAEVAVVGAEAVARGSLAHLPTTPALPALPVLVIACDRSTVRRCLDKLLHYRPSAERFPIIVSQDCGHEETARVIASYGNTVMHIKQPDLGDLPMPPEHRKFQGYYRIARHYRWALSQIFHTFKYQAAVVVEDDLEVAPDFFEYFQATYPLLRADLSLWCVSAWHDNGKEQMVDVTRPDLIYRTDFFPGLGWLLLAELWDELEPKWPRAFWDDWMRRPEQRQERACLRPEISRTLTFGRKGVSQGQFFDQHLKFIKLNQGFVPFSQLDLSYLQREAYDRDFPAQVYAAPVLRVEDLQANRQRELGEVRVQYTSRDSFKAFAKALGVMDDLKSGIPRAGYRGIVSFLFRGRRVYLAPPEDWTGYDPSWS
SIO_010081: LOC114808698
subclass of: SO_0000673
so part of: LOC114808698
location: complement(169215..170576)
location: region:169215-170576:-1
so has part: feature:169215-170576:-1:exon

XP_028912351.1
type: Protein
SIO_000068: ncbiprotein

position:169215:-1
position: 169215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:170576:-1
position: 170576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:169215-170576:-1:exon

LOC114808698
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808698
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like
translation: MLKKQRTGLVLWGAILFMAWNALLLFFFWTRPSPSGLTPAAPFAKDRASLTREVIRLAQDAEVELERQRGLLQQIREHSALWSRWQAEVAVVGAEAVARGSLAHLPTTPALPALPVLVIACDRSTVRRCLDKLLHYRPSAERFPIIVSQDCGHEETARVIASYGNTVMHIKQPDLGDLPMPPEHRKFQGYYRIARHYRWALSQIFHTFKYQAAVVVEDDLEVAPDFFEYFQATYPLLRADLSLWCVSAWHDNGKEQMVDVTRPDLIYRTDFFPGLGWLLLAELWDELEPKWPRAFWDDWMRRPEQRQERACLRPEISRTLTFGRKGVSQGQFFDQHLKFIKLNQGFVPFSQLDLSYLQREAYDRDFPAQVYAAPVLRVEDLQANRQRELGEVRVQYTSRDSFKAFAKALGVMDDLKSGIPRAGYRGIVSFLFRGRRVYLAPPEDWTGYDPSWS
SIO_010081: LOC114808698
subclass of: SO_0000673
so part of: LOC114808698
location: complement(169215..170576)
location: region:169215-170576:-1
so has part: feature:169215-170576:-1:exon

XP_028912352.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:169215-170576:-1:exon

LOC114808698
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9258
gene: LOC114808698
product: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_003756505.1
SIO_010081: LOC114808698
so part of: LOC114808698
location: complement(join(183245..183284,184749..184875))
location: region:183245-184875:-1
so has part: feature:184749-184875:-1:exon
so has part: feature:183245-183284:-1:exon

position:183245:-1
position: 183245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:184875:-1
position: 184875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:184749-184875:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:183245-183284:-1:exon

position:183284:-1
position: 183284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808710
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808710
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 254147..254284
location: region:254147-254284:1
so has part: feature:254147-254284:1:exon
subclass of: SO_0000578

114808710
type: Gene
SIO_000068: ncbigene

position:254147:1
position: 254147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:254284:1
position: 254284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254147-254284:1:exon

LOC114808710
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9258
nc RNA class: snoRNA
gene: LOC114808710
product: small nucleolar RNA SNORA7
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00409
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003756511.1
SIO_010081: LOC114808710
subclass of: SO_0000673
so part of: LOC114808710
location: 254147..254284
location: region:254147-254284:1
so has part: feature:254147-254284:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:254147-254284:1:exon

LOC114808703
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808703
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(264099..280752)
location: region:264099-280752:-1
so has part: feature:264099-280752:-1:exon
subclass of: SO_0000010

114808703
type: Gene
SIO_000068: ncbigene

position:264099:-1
position: 264099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:280752:-1
position: 280752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:264099-280752:-1:exon

LOC114808703
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808703
product: olfactory receptor 2G3-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
transcript id: XM_029056523.1
SIO_010081: LOC114808703
subclass of: SO_0000673
so part of: LOC114808703
location: complement(join(264099..264147,264340..264398,272274..272406,274168..274551,277506..278012,280726..280752))
location: region:264099-280752:-1
so has part: feature:280726-280752:-1:exon
so has part: feature:277506-278012:-1:exon
so has part: feature:274168-274551:-1:exon
so has part: feature:272274-272406:-1:exon
so has part: feature:264340-264398:-1:exon
so has part: feature:264099-264147:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:280726-280752:-1:exon

position:280726:-1
position: 280726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:277506-278012:-1:exon

position:277506:-1
position: 277506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:278012:-1
position: 278012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:274168-274551:-1:exon

position:274168:-1
position: 274168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:274551:-1
position: 274551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:272274-272406:-1:exon

position:272274:-1
position: 272274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:272406:-1
position: 272406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:264340-264398:-1:exon

position:264340:-1
position: 264340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:264398:-1
position: 264398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:264099-264147:-1:exon

position:264147:-1
position: 264147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808703
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808703
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(274472..274474),aa:OTHER)
product: LOW QUALITY PROTEIN: olfactory receptor 2G3-like
translation: MEDKDIEIQGSKIPGRWWKPVKVSSFERVILLGFSDQSPHLEAALFVFVLFFYLLTLLGNTAIMVVSRLDLRLHTPMYFLLSQLSFLDLCFSTSLAPQTLVNLRRPKKTITFGGCVVQLYVSLALGSTECVLLALMALDRYAAICQPLPYAMLMHPSLCRRLAAISWLSGVANSLVHSTFTLQLPRCGNRHLDHFICEVPALIXLACADTTISELVLFTLSILVGLVSPAFILVSYXFIVQAGLRIGSPEGRTKAISTCSSHLLVVIIFYGTIIFMYLQPGGNYSQDHGKFVSFFYTMVAPTLNLIIYTLRSQEVKGALKKLVLGGLFLGEDKTKWEFPMKETPTCYNTECSPPAQKVQRPPNIKFAETRSLSYSLDSSVKMDDI
SIO_010081: LOC114808703
subclass of: SO_0000673
so part of: LOC114808703
location: complement(join(264099..264147,264340..264398,272274..272406,274168..274551,277506..278012,280726..280752))
location: region:264099-280752:-1
so has part: feature:280726-280752:-1:exon
so has part: feature:277506-278012:-1:exon
so has part: feature:274168-274551:-1:exon
so has part: feature:272274-272406:-1:exon
so has part: feature:264340-264398:-1:exon
so has part: feature:264099-264147:-1:exon

XP_028912356.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:280726-280752:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:277506-278012:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:274168-274551:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:272274-272406:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:264340-264398:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:264099-264147:-1:exon

LOC114808704
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808704
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 302860..303765
location: region:302860-303765:1
so has part: feature:302860-303765:1:exon

114808704
type: Gene
SIO_000068: ncbigene

position:302860:1
position: 302860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:303765:1
position: 303765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:302860-303765:1:exon

LOC114808704
type: Exon
subclass of: SO_0000147
RO_0002162: 9258
gene: LOC114808704
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC114808704
subclass of: SO_0000673
so part of: LOC114808704
location: 302860..303765
location: region:302860-303765:1
so has part: feature:302860-303765:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:302860-303765:1:exon

TRNAG-UCC
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: TRNAG-UCC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 329921..329992
location: region:329921-329992:1
so has part: feature:329921-329992:1:exon
subclass of: SO_0000663

114808712
type: Gene
SIO_000068: ncbigene

position:329921:1
position: 329921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:329992:1
position: 329992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:329921-329992:1:exon

TRNAG-UCC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9258
gene: TRNAG-UCC
product: tRNA-Gly
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA glycine (anticodon UCC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:329954..329956,aa:Gly,seq:tcc)
SIO_010081: TRNAG-UCC
subclass of: SO_0000673
so part of: TRNAG-UCC
location: 329921..329992
location: region:329921-329992:1
so has part: feature:329921-329992:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:329921-329992:1:exon

LOC114805387
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114805387
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(356060..356965)
location: region:356060-356965:-1
so has part: feature:356060-356965:-1:exon

114805387
type: Gene
SIO_000068: ncbigene

position:356060:-1
position: 356060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:356965:-1
position: 356965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:356060-356965:-1:exon

LOC114805387
type: Exon
subclass of: SO_0000147
RO_0002162: 9258
gene: LOC114805387
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
pseudo: true
SIO_010081: LOC114805387
subclass of: SO_0000673
so part of: LOC114805387
location: complement(356060..356965)
location: region:356060-356965:-1
so has part: feature:356060-356965:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:356060-356965:-1:exon

LOC114808711
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808711
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(401733..401870)
location: region:401733-401870:-1
so has part: feature:401733-401870:-1:exon
subclass of: SO_0000578

114808711
type: Gene
SIO_000068: ncbigene

position:401733:-1
position: 401733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:401870:-1
position: 401870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:401733-401870:-1:exon

LOC114808711
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9258
nc RNA class: snoRNA
gene: LOC114808711
product: small nucleolar RNA SNORA7
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00409
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003756512.1
SIO_010081: LOC114808711
subclass of: SO_0000673
so part of: LOC114808711
location: complement(401733..401870)
location: region:401733-401870:-1
so has part: feature:401733-401870:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:401733-401870:-1:exon

TRNAG-UCC
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: TRNAG-UCC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 435374..435445
location: region:435374-435445:1
so has part: feature:435374-435445:1:exon
subclass of: SO_0000663

114808713
type: Gene
SIO_000068: ncbigene

position:435374:1
position: 435374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:435445:1
position: 435445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:435374-435445:1:exon

TRNAG-UCC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9258
gene: TRNAG-UCC
product: tRNA-Gly
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA glycine (anticodon UCC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:435407..435409,aa:Gly,seq:tcc)
SIO_010081: TRNAG-UCC
subclass of: SO_0000673
so part of: TRNAG-UCC
location: 435374..435445
location: region:435374-435445:1
so has part: feature:435374-435445:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:435374-435445:1:exon

LOC114808700
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808700
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 534777..548365
location: region:534777-548365:1
so has part: feature:534777-548365:1:exon
subclass of: SO_0000011

114808700
type: Gene
SIO_000068: ncbigene

position:534777:1
position: 534777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:548365:1
position: 548365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:534777-548365:1:exon

LOC114808700
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9258
nc RNA class: lncRNA
gene: LOC114808700
product: uncharacterized LOC114808700
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XR_003756507.1
SIO_010081: LOC114808700
subclass of: SO_0000673
so part of: LOC114808700
location: join(534777..534842,547620..547696,548047..548365)
location: region:534777-548365:1
so has part: feature:534777-534842:1:exon
so has part: feature:547620-547696:1:exon
so has part: feature:548047-548365:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:534777-534842:1:exon

position:534842:1
position: 534842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:547620-547696:1:exon

position:547620:1
position: 547620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:547696:1
position: 547696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:548047-548365:1:exon

position:548047:1
position: 548047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114808701
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808701
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(574920..688866)
location: region:574920-688866:-1
so has part: feature:574920-688866:-1:exon
subclass of: SO_0000010

114808701
type: Gene
SIO_000068: ncbigene

position:574920:-1
position: 574920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:688866:-1
position: 688866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:574920-688866:-1:exon

LOC114808701
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808701
product: RING finger protein 17
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_029056521.2
SIO_010081: LOC114808701
subclass of: SO_0000673
so part of: LOC114808701
location: complement(join(574920..575106,576768..576867,578852..579041,579271..579406,584379..584538,587773..587889,590744..590800,594080..594205,595258..595341,598993..599112,602023..602186,605365..605639,608846..608958,610177..610267,615080..615198,618667..618817,619004..619315,628182..628302,631971..632091,633327..633442,634796..634952,660703..660844,661174..661250,675177..675271,688674..688866))
location: region:574920-688866:-1
so has part: feature:688674-688866:-1:exon
so has part: feature:675177-675271:-1:exon
so has part: feature:661174-661250:-1:exon
so has part: feature:660703-660844:-1:exon
so has part: feature:634796-634952:-1:exon
so has part: feature:633327-633442:-1:exon
so has part: feature:631971-632091:-1:exon
so has part: feature:628182-628302:-1:exon
so has part: feature:619004-619315:-1:exon
so has part: feature:618667-618817:-1:exon
so has part: feature:615080-615198:-1:exon
so has part: feature:610177-610267:-1:exon
so has part: feature:608846-608958:-1:exon
so has part: feature:605365-605639:-1:exon
so has part: feature:602023-602186:-1:exon
so has part: feature:598993-599112:-1:exon
so has part: feature:595258-595341:-1:exon
so has part: feature:594080-594205:-1:exon
so has part: feature:590744-590800:-1:exon
so has part: feature:587773-587889:-1:exon
so has part: feature:584379-584538:-1:exon
so has part: feature:579271-579406:-1:exon
so has part: feature:578852-579041:-1:exon
so has part: feature:576768-576867:-1:exon
so has part: feature:574920-575106:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:688674-688866:-1:exon

position:688674:-1
position: 688674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:675177-675271:-1:exon

position:675177:-1
position: 675177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:675271:-1
position: 675271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:661174-661250:-1:exon

position:661174:-1
position: 661174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:661250:-1
position: 661250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:660703-660844:-1:exon

position:660703:-1
position: 660703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:660844:-1
position: 660844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:634796-634952:-1:exon

position:634796:-1
position: 634796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:634952:-1
position: 634952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:633327-633442:-1:exon

position:633327:-1
position: 633327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:633442:-1
position: 633442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:631971-632091:-1:exon

position:631971:-1
position: 631971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:632091:-1
position: 632091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:628182-628302:-1:exon

position:628182:-1
position: 628182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:628302:-1
position: 628302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:619004-619315:-1:exon

position:619004:-1
position: 619004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:619315:-1
position: 619315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:618667-618817:-1:exon

position:618667:-1
position: 618667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:618817:-1
position: 618817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:615080-615198:-1:exon

position:615080:-1
position: 615080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:615198:-1
position: 615198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:610177-610267:-1:exon

position:610177:-1
position: 610177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:610267:-1
position: 610267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:608846-608958:-1:exon

position:608846:-1
position: 608846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:608958:-1
position: 608958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:605365-605639:-1:exon

position:605365:-1
position: 605365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:605639:-1
position: 605639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:602023-602186:-1:exon

position:602023:-1
position: 602023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:602186:-1
position: 602186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:598993-599112:-1:exon

position:598993:-1
position: 598993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:599112:-1
position: 599112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:595258-595341:-1:exon

position:595258:-1
position: 595258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:595341:-1
position: 595341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:594080-594205:-1:exon

position:594080:-1
position: 594080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:594205:-1
position: 594205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:590744-590800:-1:exon

position:590744:-1
position: 590744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:590800:-1
position: 590800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:587773-587889:-1:exon

position:587773:-1
position: 587773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:587889:-1
position: 587889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:584379-584538:-1:exon

position:584379:-1
position: 584379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:584538:-1
position: 584538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:579271-579406:-1:exon

position:579271:-1
position: 579271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:579406:-1
position: 579406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:578852-579041:-1:exon

position:578852:-1
position: 578852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:579041:-1
position: 579041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:576768-576867:-1:exon

position:576768:-1
position: 576768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:576867:-1
position: 576867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:574920-575106:-1:exon

position:575106:-1
position: 575106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808701
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808701
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RING finger protein 17
translation: MAAAGAGGGYGSGSGWMAARPCPSVPRGENRLRDPDEAICSACRSGFAAARGLPVEIHHRNPPPEACFSRTEDSGAVLCPDCEIVQIPKTGFQSTLSWLESVKLGDFVSLQSLLPYKEPEKNMAIRYGPPVLPKESAEVSVVVCHVNSPGDFYLQLVEDLDFLLFLKIINDAYKNEYEGENLEILCPVKGQACVARFEDGVLYRAEVLGFPGHREVEVKNVDVGSTTRIALQDICKVKDELLSFPRKAINCRLAHIEPSIRTGPWSTEAKEKFEEMISGRFLICSVDRIMEDDVLLVELFLSPHVPGMMANSVNSELVKRGLACYDPGCTPKENPTKHDEIWDPSLEEILLYEAKITGSAVKKPGMDQDAESSVEELLSHGTEVTGSEVKKSMKDQGSELLDIQGLPVQFCHVVSPEKIYFHWFETESLLASLQEEMAAVYEGSNLEPLPWTSGMHCAVLMPQLKQWRRGQITRIISETLVEVFQFDYGVEMEVNVACLRKLKENLMEMGKFAVECCLVDIRPTGGSDRWTATTCDYLSFCLTGAVAKIIIQEKQRNPMPVKILCQDKTGRSFDFSAVLVEKGLALRVKRFPKADKSDLVSEASLAIPLMPVPKNPAVATCLKIFSKSEKEVTGDKASKPAFKPKTVETYKPPVIPSAKFFEAIISWVADDGTVYVIPKSSEPEFTVLMEKMQGIFTSLDLLVPHSWKKEEACVIRGSDSQWYRGVILEIIDSCVKVQYLDLGYVEEIPPCHLYPVECSTELPQFCIPCQLYNTLPVGNFWSPDAVELLRELLLPKREVKIHNMASPEHPAGMLSVHLYFAGMSLSYFMAHHEHCTLEGSEDGLTSDIENRSENSVEEYWKISFEELHRPETKIRVLPPYSLLSLPLPGELFFVQVRHLVVPNEVYVCPEHGDGSSHDQGTEERKISWKSEPESLEEGLQHCNLSASSLPFLTDFKTDMPCLAQYSDGLWYRGKIISANGFDPLTVLVQFVDYGTWEKLPAGRLRQIPDSLMQYPAQAAKVTLTGFKPPKSDLEKVRIPYCPSWSMEAVWSMVDLLQGKRLQALTLTQTPEPMVLLFDDEQNPVYRPLVDMGLADLDE
SIO_010081: LOC114808701
subclass of: SO_0000673
so part of: LOC114808701
location: complement(join(576769..576867,578852..579041,579271..579406,584379..584538,587773..587889,590744..590800,594080..594205,595258..595341,598993..599112,602023..602186,605365..605639,608846..608958,610177..610267,615080..615198,618667..618817,619004..619315,628182..628302,631971..632091,633327..633442,634796..634952,660703..660844,661174..661250,675177..675271,688674..688827))
location: region:576769-688827:-1
so has part: feature:688674-688827:-1:exon
so has part: feature:675177-675271:-1:exon
so has part: feature:661174-661250:-1:exon
so has part: feature:660703-660844:-1:exon
so has part: feature:634796-634952:-1:exon
so has part: feature:633327-633442:-1:exon
so has part: feature:631971-632091:-1:exon
so has part: feature:628182-628302:-1:exon
so has part: feature:619004-619315:-1:exon
so has part: feature:618667-618817:-1:exon
so has part: feature:615080-615198:-1:exon
so has part: feature:610177-610267:-1:exon
so has part: feature:608846-608958:-1:exon
so has part: feature:605365-605639:-1:exon
so has part: feature:602023-602186:-1:exon
so has part: feature:598993-599112:-1:exon
so has part: feature:595258-595341:-1:exon
so has part: feature:594080-594205:-1:exon
so has part: feature:590744-590800:-1:exon
so has part: feature:587773-587889:-1:exon
so has part: feature:584379-584538:-1:exon
so has part: feature:579271-579406:-1:exon
so has part: feature:578852-579041:-1:exon
so has part: feature:576769-576867:-1:exon

XP_028912354.1
type: Protein
SIO_000068: ncbiprotein

position:576769:-1
position: 576769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:688827:-1
position: 688827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:688674-688827:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:675177-675271:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:661174-661250:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:660703-660844:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:634796-634952:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:633327-633442:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:631971-632091:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:628182-628302:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:619004-619315:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:618667-618817:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:615080-615198:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:610177-610267:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:608846-608958:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:605365-605639:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:602023-602186:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:598993-599112:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:595258-595341:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:594080-594205:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:590744-590800:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:587773-587889:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:584379-584538:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:579271-579406:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:578852-579041:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:576769-576867:-1:exon

TRNAG-UCC
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: TRNAG-UCC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(728093..728164)
location: region:728093-728164:-1
so has part: feature:728093-728164:-1:exon
subclass of: SO_0000663

114808714
type: Gene
SIO_000068: ncbigene

position:728093:-1
position: 728093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:728164:-1
position: 728164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:728093-728164:-1:exon

TRNAG-UCC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9258
gene: TRNAG-UCC
product: tRNA-Gly
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA glycine (anticodon UCC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(728129..728131),aa:Gly,seq:tcc)
SIO_010081: TRNAG-UCC
subclass of: SO_0000673
so part of: TRNAG-UCC
location: complement(728093..728164)
location: region:728093-728164:-1
so has part: feature:728093-728164:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:728093-728164:-1:exon

ORNANAV1R-PS3995
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: ORNANAV1R-PS3995
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 769933..773934
location: region:769933-773934:1
so has part: feature:769933-773934:1:exon

100311366
type: Gene
SIO_000068: ncbigene

position:769933:1
position: 769933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:773934:1
position: 773934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:769933-773934:1:exon

LOC114808707
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808707
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(963742..1011632)
location: region:963742-1011632:-1
so has part: feature:963742-1011632:-1:exon
subclass of: SO_0000010

114808707
type: Gene
SIO_000068: ncbigene

position:963742:-1
position: 963742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1011632:-1
position: 1011632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:963742-1011632:-1:exon

LOC114808707
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808707
product: rho GTPase-activating protein 44-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_029056528.1
SIO_010081: LOC114808707
subclass of: SO_0000673
so part of: LOC114808707
location: complement(join(963742..965508,969517..969909,970665..970810,972409..972630,976980..977160,984915..985006,985177..985290,990403..990483,991498..991579,992509..992620,995823..995950,996501..996582,997138..997206,997608..997725,1005649..1005725,1006044..1006155,1011560..1011632))
location: region:963742-1011632:-1
so has part: feature:1011560-1011632:-1:exon
so has part: feature:1006044-1006155:-1:exon
so has part: feature:1005649-1005725:-1:exon
so has part: feature:997608-997725:-1:exon
so has part: feature:997138-997206:-1:exon
so has part: feature:996501-996582:-1:exon
so has part: feature:995823-995950:-1:exon
so has part: feature:992509-992620:-1:exon
so has part: feature:991498-991579:-1:exon
so has part: feature:990403-990483:-1:exon
so has part: feature:985177-985290:-1:exon
so has part: feature:984915-985006:-1:exon
so has part: feature:976980-977160:-1:exon
so has part: feature:972409-972630:-1:exon
so has part: feature:970665-970810:-1:exon
so has part: feature:969517-969909:-1:exon
so has part: feature:963742-965508:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1011560-1011632:-1:exon

position:1011560:-1
position: 1011560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1006044-1006155:-1:exon

position:1006044:-1
position: 1006044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1006155:-1
position: 1006155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1005649-1005725:-1:exon

position:1005649:-1
position: 1005649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1005725:-1
position: 1005725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:997608-997725:-1:exon

position:997608:-1
position: 997608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:997725:-1
position: 997725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:997138-997206:-1:exon

position:997138:-1
position: 997138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:997206:-1
position: 997206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:996501-996582:-1:exon

position:996501:-1
position: 996501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:996582:-1
position: 996582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:995823-995950:-1:exon

position:995823:-1
position: 995823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:995950:-1
position: 995950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:992509-992620:-1:exon

position:992509:-1
position: 992509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:992620:-1
position: 992620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:991498-991579:-1:exon

position:991498:-1
position: 991498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:991579:-1
position: 991579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:990403-990483:-1:exon

position:990403:-1
position: 990403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:990483:-1
position: 990483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:985177-985290:-1:exon

position:985177:-1
position: 985177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:985290:-1
position: 985290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:984915-985006:-1:exon

position:984915:-1
position: 984915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:985006:-1
position: 985006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:976980-977160:-1:exon

position:976980:-1
position: 976980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:977160:-1
position: 977160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:972409-972630:-1:exon

position:972409:-1
position: 972409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:972630:-1
position: 972630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:970665-970810:-1:exon

position:970665:-1
position: 970665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:970810:-1
position: 970810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:969517-969909:-1:exon

position:969517:-1
position: 969517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:969909:-1
position: 969909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:963742-965508:-1:exon

position:965508:-1
position: 965508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808707
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808707
product: rho GTPase-activating protein 44-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_039910978.1
SIO_010081: LOC114808707
subclass of: SO_0000673
so part of: LOC114808707
location: complement(join(963742..965508,969517..969909,970665..970810,972409..972630,973162..973179,976980..977160,984915..985006,985177..985290,990403..990483,991498..991579,992509..992620,995823..995950,996501..996582,997138..997206,997608..997725,1005649..1005734))
location: region:963742-1005734:-1
so has part: feature:1005649-1005734:-1:exon
so has part: feature:997608-997725:-1:exon
so has part: feature:997138-997206:-1:exon
so has part: feature:996501-996582:-1:exon
so has part: feature:995823-995950:-1:exon
so has part: feature:992509-992620:-1:exon
so has part: feature:991498-991579:-1:exon
so has part: feature:990403-990483:-1:exon
so has part: feature:985177-985290:-1:exon
so has part: feature:984915-985006:-1:exon
so has part: feature:976980-977160:-1:exon
so has part: feature:973162-973179:-1:exon
so has part: feature:972409-972630:-1:exon
so has part: feature:970665-970810:-1:exon
so has part: feature:969517-969909:-1:exon
so has part: feature:963742-965508:-1:exon

position:1005734:-1
position: 1005734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1005649-1005734:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:997608-997725:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:997138-997206:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:996501-996582:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:995823-995950:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:992509-992620:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:991498-991579:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:990403-990483:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:985177-985290:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:984915-985006:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:976980-977160:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:973162-973179:-1:exon

position:973162:-1
position: 973162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:973179:-1
position: 973179
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:972409-972630:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:970665-970810:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:969517-969909:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:963742-965508:-1:exon

LOC114808707
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808707
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: rho GTPase-activating protein 44-like isoform X1
translation: MLKLCGEAEDKLVQELIHFELQVERGVIEPLFMLAEVEIPNIQKQRKHLAKLVLDMDSSKTRWQQTSKTSGLSSNLQSTGAKADALREEMEEAANRVEICRDQLSADMYGFVTKEIDYANYFQMLMEVQAEYHRKSLVLLQNVLPQLKAQQEAWVEKPSYGKPLEDHLDVSGREIAFPIEACVTMLLECGMQEEGLFRVAPSASKLKKLKAALDCCVLDLQEYSADPHAIAGALKSYLRELPEPLLTFELYKEWIQASNIQDQDKRLQALWNTCEKLPKANHSNIRYLIKFLAKLSEYQDVNKMTTSNIAIVLGPNLLWPQADGNITEMMTTISLQIVGIIEPIIQHADWFFPGDIEFNVTGSYGSPVHTNHNANYSSMPSPDTDPPDRPPGEQARRPLSVATDNMMLEFYKKDGMGVRVMDMSWVARRRSSFARKSACAPPAIQPPAPPSETAAPPQSPGPEQPPETSASPSPTPTSFGFQLGPERTSTLKSKELSPGAGHAGSPGSSHAAPSAASQLAAGPSLPPPYQNPHTLQKVSKKLAPVPPKPPLGQPTSMTDQSNGQASPVSLSPIPPSTPSPYGFSYPTGYSLLPLGQLFPASAPPPSLPAASPTSSSILAKSRPTPKPRQRPPLPPPPQPPSASLSGSSPQSIDHPVLDGLSPGESVSTDLGHFEIPSIHIELGSGLHQGPLEQMQRHSVARKINLEEEDSESTAL
SIO_010081: LOC114808707
subclass of: SO_0000673
so part of: LOC114808707
location: complement(join(965366..965508,969517..969909,970665..970810,972409..972630,976980..977160,984915..985006,985177..985290,990403..990483,991498..991579,992509..992620,995823..995950,996501..996582,997138..997206,997608..997725,1005649..1005725,1006044..1006151))
location: region:965366-1006151:-1
so has part: feature:1006044-1006151:-1:exon
so has part: feature:1005649-1005725:-1:exon
so has part: feature:997608-997725:-1:exon
so has part: feature:997138-997206:-1:exon
so has part: feature:996501-996582:-1:exon
so has part: feature:995823-995950:-1:exon
so has part: feature:992509-992620:-1:exon
so has part: feature:991498-991579:-1:exon
so has part: feature:990403-990483:-1:exon
so has part: feature:985177-985290:-1:exon
so has part: feature:984915-985006:-1:exon
so has part: feature:976980-977160:-1:exon
so has part: feature:972409-972630:-1:exon
so has part: feature:970665-970810:-1:exon
so has part: feature:969517-969909:-1:exon
so has part: feature:965366-965508:-1:exon

XP_028912361.1
type: Protein
SIO_000068: ncbiprotein

position:965366:-1
position: 965366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1006151:-1
position: 1006151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1006044-1006151:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1005649-1005725:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:997608-997725:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:997138-997206:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:996501-996582:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:995823-995950:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:992509-992620:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:991498-991579:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:990403-990483:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:985177-985290:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:984915-985006:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:976980-977160:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:972409-972630:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:970665-970810:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:969517-969909:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:965366-965508:-1:exon

LOC114808707
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808707
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: rho GTPase-activating protein 44-like isoform X2
translation: MDSSKTRWQQTSKTSGLSSNLQSTGAKADALREEMEEAANRVEICRDQLSADMYGFVTKEIDYANYFQMLMEVQAEYHRKSLVLLQNVLPQLKAQQEAWVEKPSYGKPLEDHLDVSGREIAFPIEACVTMLLECGMQEEGLFRVAPSASKLKKLKAALDCCVLDLQEYSADPHAIAGALKSYLRELPEPLLTFELYKEWIQASNIQDQDKRLQALWNTCEKLPKANHSNIRYLIKFLAKLSEYQDVNKMTTSNIAIVLGPNLLWPQADGNITEMMTTISLQIVGIIEPIIQHADWFFPGDIEFNVTGSYGSPVHTNHNANYSSMPSPDTDPPDRPPGEQARRPLSVATDNMMLEFYKKDGLRKIQSMGVRVMDMSWVARRRSSFARKSACAPPAIQPPAPPSETAAPPQSPGPEQPPETSASPSPTPTSFGFQLGPERTSTLKSKELSPGAGHAGSPGSSHAAPSAASQLAAGPSLPPPYQNPHTLQKVSKKLAPVPPKPPLGQPTSMTDQSNGQASPVSLSPIPPSTPSPYGFSYPTGYSLLPLGQLFPASAPPPSLPAASPTSSSILAKSRPTPKPRQRPPLPPPPQPPSASLSGSSPQSIDHPVLDGLSPGESVSTDLGHFEIPSIHIELGSGLHQGPLEQMQRHSVARKINLEEEDSESTAL
SIO_010081: LOC114808707
subclass of: SO_0000673
so part of: LOC114808707
location: complement(join(965366..965508,969517..969909,970665..970810,972409..972630,973162..973179,976980..977160,984915..985006,985177..985290,990403..990483,991498..991579,992509..992620,995823..995950,996501..996582,997138..997206,997608..997725,1005649..1005668))
location: region:965366-1005668:-1
so has part: feature:1005649-1005668:-1:exon
so has part: feature:997608-997725:-1:exon
so has part: feature:997138-997206:-1:exon
so has part: feature:996501-996582:-1:exon
so has part: feature:995823-995950:-1:exon
so has part: feature:992509-992620:-1:exon
so has part: feature:991498-991579:-1:exon
so has part: feature:990403-990483:-1:exon
so has part: feature:985177-985290:-1:exon
so has part: feature:984915-985006:-1:exon
so has part: feature:976980-977160:-1:exon
so has part: feature:973162-973179:-1:exon
so has part: feature:972409-972630:-1:exon
so has part: feature:970665-970810:-1:exon
so has part: feature:969517-969909:-1:exon
so has part: feature:965366-965508:-1:exon

XP_039766912.1
type: Protein
SIO_000068: ncbiprotein

position:1005668:-1
position: 1005668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1005649-1005668:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:997608-997725:-1:exon

urn:…
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