Ornithorhynchus anatinus isolate Pmale09 chromosome Y3, mOrnAna1.pri.v4, whole genome shotgun sequence.
type: Entry
definition: Ornithorhynchus anatinus isolate Pmale09 chromosome Y3, mOrnAna1.pri.v4, whole genome shotgun sequence.
sequence version: NC_053177.1
sequence date: 2021-03-08
sequence: sequence
division: CON
label: NC_053177.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA534073
dblink: SAMN08537700
keyword: WGS
keyword: RefSeq
source: Ornithorhynchus anatinus (platypus)
organism: Ornithorhynchus anatinus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM026825.1.\nAssembly name: mOrnAna1.pri.v4\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2020/11/06. The original whole-genome shotgun project has the\naccession RZJT00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 06-DEC-2019\nAssembly Method :: FALCON v. 5.1.1; FALCON Unzip v. 1.0.2;\n purge_haplotigs v. bit 7.10.2018;\n scaff10X v. git 4.28.2018; Bionano Solve\n DLS v. 3.2.1; Salsa2 HiC v. 2.0;\n smrtanalysis Arrow polishing & gap\n fillingt v. 5.1.0.26412; longranger align\n v. 2.2.2; freebayes v. 1.2.0; gEVAL\n manual curation v. 2019-12-06\nAssembly Name :: mOrnAna1.pri.v4\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 58.8x\nSequencing Technology :: PacBio RSII; 10X Genomics linked reads;\n Bionano Genomics DLS; Dovetail Genomics\n HiC; Arima Genomics\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Ornithorhynchus anatinus Annotation\n Release 105\nAnnotation Version :: 105\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.6\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 2467712
topology: linear
so has quality: SO_0000987
location: 1..2467712
location: region:1-2467712:1
RO_0002162: 9258

NC_053177
type: RefSeq
SIO_000068: refseq

PRJNA534073
type: BioProject
SIO_000068: bioproject

SAMN08537700
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2467712:1
position: 2467712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-2467712:1:source
so part of: sequence
organism: Ornithorhynchus anatinus
mol type: genomic DNA
isolate: Pmale09
chromosome: Y3
sex: male
tissue type: liver; muscle

9258
type: Taxonomy
SIO_000068: taxonomy

LOC100083829
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC100083829
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 11165..48949
location: region:11165-48949:1
so has part: feature:11165-48949:1:exon
subclass of: SO_0000010

100083829
type: Gene
SIO_000068: ncbigene

position:11165:1
position: 11165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48949:1
position: 48949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11165-48949:1:exon

LOC100083829
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC100083829
product: chloride intracellular channel protein 5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 61% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_039910975.1
SIO_010081: LOC100083829
subclass of: SO_0000673
so part of: LOC100083829
location: join(11165..11290,12184..12241,12613..12728,13404..13583,13756..13886,45199..45420,46892..47017,47115..47221,48086..48261,48407..48949)
location: region:11165-48949:1
so has part: feature:11165-11290:1:exon
so has part: feature:12184-12241:1:exon
so has part: feature:12613-12728:1:exon
so has part: feature:13404-13583:1:exon
so has part: feature:13756-13886:1:exon
so has part: feature:45199-45420:1:exon
so has part: feature:46892-47017:1:exon
so has part: feature:47115-47221:1:exon
so has part: feature:48086-48261:1:exon
so has part: feature:48407-48949:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11165-11290:1:exon

position:11290:1
position: 11290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:12184-12241:1:exon

position:12184:1
position: 12184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12241:1
position: 12241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:12613-12728:1:exon

position:12613:1
position: 12613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12728:1
position: 12728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:13404-13583:1:exon

position:13404:1
position: 13404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13583:1
position: 13583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:13756-13886:1:exon

position:13756:1
position: 13756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13886:1
position: 13886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:45199-45420:1:exon

position:45199:1
position: 45199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45420:1
position: 45420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:46892-47017:1:exon

position:46892:1
position: 46892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47017:1
position: 47017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:47115-47221:1:exon

position:47115:1
position: 47115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47221:1
position: 47221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:48086-48261:1:exon

position:48086:1
position: 48086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48261:1
position: 48261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:48407-48949:1:exon

position:48407:1
position: 48407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100083829
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC100083829
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: chloride intracellular channel protein 5
translation: MVPYNTSHHEPPGKISSWPSKRWANGTLGFLESNNKSGSWKQIAFKAKRLTCPHHKLQLERTLPTMDRPLGRICNWMRQCWVNGTIGCLESPSTTTSGKQFYTPLTTWTTYQNFELDESVLDEQNHRLLQVQQCSMTSSTKMLHWGGPKSRAENQGQAQKIVLKPRRLNRKHHRLQDQSSLSEMYMRMEDWAHITPQAQQKQGTGRIGNTGRDAKARAEDFTSRRSLAPYALADPRLLALQASEDGESVGNCPFCQRLFMILLLKGVPFTLTTVDTKRSLDVLKDFAPGSQLPILLYDGEARTDTLQIEEFLEETLGPPNFPSLVPRYKESNTAGNDVFHKFSAFIKNPVPSQDEALHRMLLRALLKLDGYLSSPLEHELEREPRLTQSRRRFLDGDQMTLADCSLLPKLHIVNTVCDHFRQAPIPAELRGLHRYLANALQIKEFKYTCPQTAEILAAYKPVVRPLPEPSWEFGWWGGGS
SIO_010081: LOC100083829
subclass of: SO_0000673
so part of: LOC100083829
location: join(11165..11290,12184..12241,12613..12728,13404..13583,13756..13886,45199..45420,46892..47017,47115..47221,48086..48261,48407..48607)
location: region:11165-48607:1
so has part: feature:11165-11290:1:exon
so has part: feature:12184-12241:1:exon
so has part: feature:12613-12728:1:exon
so has part: feature:13404-13583:1:exon
so has part: feature:13756-13886:1:exon
so has part: feature:45199-45420:1:exon
so has part: feature:46892-47017:1:exon
so has part: feature:47115-47221:1:exon
so has part: feature:48086-48261:1:exon
so has part: feature:48407-48607:1:exon

XP_039766909.1
type: Protein
SIO_000068: ncbiprotein

position:48607:1
position: 48607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11165-11290:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:12184-12241:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12613-12728:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:13404-13583:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:13756-13886:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:45199-45420:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:46892-47017:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:47115-47221:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:48086-48261:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:48407-48607:1:exon

LOC114808684
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808684
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(50011..55442)
location: region:50011-55442:-1
so has part: feature:50011-55442:-1:exon
subclass of: SO_0000010

114808684
type: Gene
SIO_000068: ncbigene

position:50011:-1
position: 50011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:55442:-1
position: 55442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50011-55442:-1:exon

LOC114808684
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808684
product: protein PAXX-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_029056492.1
SIO_010081: LOC114808684
subclass of: SO_0000673
so part of: LOC114808684
location: complement(join(50011..50288,50642..50726,51377..51445,51570..51765,51870..51919,54124..54184,54304..54437,55422..55442))
location: region:50011-55442:-1
so has part: feature:55422-55442:-1:exon
so has part: feature:54304-54437:-1:exon
so has part: feature:54124-54184:-1:exon
so has part: feature:51870-51919:-1:exon
so has part: feature:51570-51765:-1:exon
so has part: feature:51377-51445:-1:exon
so has part: feature:50642-50726:-1:exon
so has part: feature:50011-50288:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:55422-55442:-1:exon

position:55422:-1
position: 55422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:54304-54437:-1:exon

position:54304:-1
position: 54304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54437:-1
position: 54437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:54124-54184:-1:exon

position:54124:-1
position: 54124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54184:-1
position: 54184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:51870-51919:-1:exon

position:51870:-1
position: 51870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51919:-1
position: 51919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:51570-51765:-1:exon

position:51570:-1
position: 51570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51765:-1
position: 51765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:51377-51445:-1:exon

position:51377:-1
position: 51377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51445:-1
position: 51445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:50642-50726:-1:exon

position:50642:-1
position: 50642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:50726:-1
position: 50726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:50011-50288:-1:exon

position:50288:-1
position: 50288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808684
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808684
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: protein PAXX-like
translation: MQQIHKEARRPWRHGGGGPALCVVTAAGSGRPRYLCYCEGPEAGDEGGLGVCVTDAAEMWATSFSAHSLAGHKSQQGLTPTENYATRFRDACEQQTVSLTLQDDGSTVSLQLRGPSGLTFELPKLPDSEARPRLQALMLELAERVRGLERRLADVEAMAASPRKKSCLSGQKLFMPDSERRRGGSGPGTRKRMPGESLINPGFKSKKAPSGVDFDDS
SIO_010081: LOC114808684
subclass of: SO_0000673
so part of: LOC114808684
location: complement(join(50249..50288,50642..50726,51377..51445,51570..51765,51870..51919,54124..54184,54304..54437,55422..55442))
location: region:50249-55442:-1
so has part: feature:55422-55442:-1:exon
so has part: feature:54304-54437:-1:exon
so has part: feature:54124-54184:-1:exon
so has part: feature:51870-51919:-1:exon
so has part: feature:51570-51765:-1:exon
so has part: feature:51377-51445:-1:exon
so has part: feature:50642-50726:-1:exon
so has part: feature:50249-50288:-1:exon

XP_028912325.1
type: Protein
SIO_000068: ncbiprotein

position:50249:-1
position: 50249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55422-55442:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:54304-54437:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:54124-54184:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:51870-51919:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:51570-51765:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:51377-51445:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:50642-50726:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:50249-50288:-1:exon

LOC107547708
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC107547708
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 58021..64092
location: region:58021-64092:1
so has part: feature:58021-64092:1:exon
subclass of: SO_0000010

107547708
type: Gene
SIO_000068: ncbigene

position:58021:1
position: 58021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64092:1
position: 64092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58021-64092:1:exon

LOC107547708
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC107547708
product: transmembrane protein 141
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 42 samples with support for all annotated introns
transcript id: XM_029056479.1
SIO_010081: LOC107547708
subclass of: SO_0000673
so part of: LOC107547708
location: join(58021..58110,58889..58955,60954..61037,62417..62524,63814..64092)
location: region:58021-64092:1
so has part: feature:58021-58110:1:exon
so has part: feature:58889-58955:1:exon
so has part: feature:60954-61037:1:exon
so has part: feature:62417-62524:1:exon
so has part: feature:63814-64092:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:58021-58110:1:exon

position:58110:1
position: 58110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:58889-58955:1:exon

position:58889:1
position: 58889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58955:1
position: 58955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:60954-61037:1:exon

position:60954:1
position: 60954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:61037:1
position: 61037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:62417-62524:1:exon

position:62417:1
position: 62417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:62524:1
position: 62524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:63814-64092:1:exon

position:63814:1
position: 63814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC107547708
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC107547708
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transmembrane protein 141
translation: MVNLGLSRVEEAVAARHPGLQEYAACQSHAFLKGIGAFITGFGAAFALQKLLNRKLPYPMQWTVLLAVVAGSAGSYAVTRAETRKCSDLWLFLETGRLPQDGAAEPSIRLDSPESREPAPQRNRYGDVLE
SIO_010081: LOC107547708
subclass of: SO_0000673
so part of: LOC107547708
location: join(58057..58110,58889..58955,60954..61037,62417..62524,63814..63893)
location: region:58057-63893:1
so has part: feature:58057-58110:1:exon
so has part: feature:58889-58955:1:exon
so has part: feature:60954-61037:1:exon
so has part: feature:62417-62524:1:exon
so has part: feature:63814-63893:1:exon

XP_028912312.1
type: Protein
SIO_000068: ncbiprotein

position:58057:1
position: 58057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63893:1
position: 63893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58057-58110:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:58889-58955:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:60954-61037:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:62417-62524:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:63814-63893:1:exon

LOC114808683
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808683
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 67351..74843
location: region:67351-74843:1
so has part: feature:67351-74843:1:exon
subclass of: SO_0000010

114808683
type: Gene
SIO_000068: ncbigene

position:67351:1
position: 67351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74843:1
position: 74843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:67351-74843:1:exon

LOC114808683
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808683
product: coiled-coil domain-containing protein 183-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_029056488.2
SIO_010081: LOC114808683
subclass of: SO_0000673
so part of: LOC114808683
location: join(67351..67529,67849..67970,69468..69545,69657..69824,70295..70399,71965..72087,72370..72495,72669..72720,74722..74843)
location: region:67351-74843:1
so has part: feature:67351-67529:1:exon
so has part: feature:67849-67970:1:exon
so has part: feature:69468-69545:1:exon
so has part: feature:69657-69824:1:exon
so has part: feature:70295-70399:1:exon
so has part: feature:71965-72087:1:exon
so has part: feature:72370-72495:1:exon
so has part: feature:72669-72720:1:exon
so has part: feature:74722-74843:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:67351-67529:1:exon

position:67529:1
position: 67529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:67849-67970:1:exon

position:67849:1
position: 67849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67970:1
position: 67970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:69468-69545:1:exon

position:69468:1
position: 69468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69545:1
position: 69545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:69657-69824:1:exon

position:69657:1
position: 69657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69824:1
position: 69824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:70295-70399:1:exon

position:70295:1
position: 70295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:70399:1
position: 70399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:71965-72087:1:exon

position:71965:1
position: 71965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:72087:1
position: 72087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:72370-72495:1:exon

position:72370:1
position: 72370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:72495:1
position: 72495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:72669-72720:1:exon

position:72669:1
position: 72669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:72720:1
position: 72720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:74722-74843:1:exon

position:74722:1
position: 74722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114808683
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808683
product: coiled-coil domain-containing protein 183-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_029056490.2
SIO_010081: LOC114808683
subclass of: SO_0000673
so part of: LOC114808683
location: join(67351..67529,67849..67970,69468..69545,69657..69824,70295..70399,71965..72087,72370..72495,72672..72720,74722..74843)
location: region:67351-74843:1
so has part: feature:67351-67529:1:exon
so has part: feature:67849-67970:1:exon
so has part: feature:69468-69545:1:exon
so has part: feature:69657-69824:1:exon
so has part: feature:70295-70399:1:exon
so has part: feature:71965-72087:1:exon
so has part: feature:72370-72495:1:exon
so has part: feature:72672-72720:1:exon
so has part: feature:74722-74843:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:67351-67529:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:67849-67970:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:69468-69545:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:69657-69824:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:70295-70399:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:71965-72087:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:72370-72495:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:72672-72720:1:exon

position:72672:1
position: 72672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:74722-74843:1:exon

LOC114808683
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808683
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coiled-coil domain-containing protein 183-like isoform X1
translation: MALRRGTQQEEEEESEPGGAEATMKVQGGKDIRDQIQELRAIIRLQEQGRVLHTQSSKQRVNQNKDTVGLLRGSIRQRTREWQMARKHDERSISWAFREEHLLKLATNKTSMESVQQKLQKYIYDRVKVHDALVHLLRRRAAVLEDLQRELLRLRRLEEPSKETELQHQRIRQLENSIEKMEMKCSSAQSIHQMYENSLASLKQELASYPSKLSNMANMVGAYQSALQDMTQMAQETIEITEVTKLDAAKAETALIAEHEAQESQLNAQKKQVDKAWVRDTGDRHRQQSRRDTDFSFLGEDLTKGKNPEPSKSQMEYEAQIISEVEKVKTAVPVFKTSG
SIO_010081: LOC114808683
subclass of: SO_0000673
so part of: LOC114808683
location: join(67391..67529,67849..67970,69468..69545,69657..69824,70295..70399,71965..72087,72370..72495,72669..72720,74722..74828)
location: region:67391-74828:1
so has part: feature:67391-67529:1:exon
so has part: feature:67849-67970:1:exon
so has part: feature:69468-69545:1:exon
so has part: feature:69657-69824:1:exon
so has part: feature:70295-70399:1:exon
so has part: feature:71965-72087:1:exon
so has part: feature:72370-72495:1:exon
so has part: feature:72669-72720:1:exon
so has part: feature:74722-74828:1:exon

XP_028912321.1
type: Protein
SIO_000068: ncbiprotein

position:67391:1
position: 67391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74828:1
position: 74828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:67391-67529:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:67849-67970:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:69468-69545:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:69657-69824:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:70295-70399:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:71965-72087:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:72370-72495:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:72669-72720:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:74722-74828:1:exon

LOC114808683
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808683
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coiled-coil domain-containing protein 183-like isoform X2
translation: MALRRGTQQEEEEESEPGGAEATMKVQGGKDIRDQIQELRAIIRLQEQGRVLHTQSSKQRVNQNKDTVGLLRGSIRQRTREWQMARKHDERSISWAFREEHLLKLATNKTSMESVQQKLQKYIYDRVKVHDALVHLLRRRAAVLEDLQRELLRLRRLEEPSKETELQHQRIRQLENSIEKMEMKCSSAQSIHQMYENSLASLKQELASYPSKLSNMANMVGAYQSALQDMTQMAQETIEITEVTKLDAAKAETALIAEHEAQESQLNAQKKQVDKAWVRDTGDRHRQSRRDTDFSFLGEDLTKGKNPEPSKSQMEYEAQIISEVEKVKTAVPVFKTSG
SIO_010081: LOC114808683
subclass of: SO_0000673
so part of: LOC114808683
location: join(67391..67529,67849..67970,69468..69545,69657..69824,70295..70399,71965..72087,72370..72495,72672..72720,74722..74828)
location: region:67391-74828:1
so has part: feature:67391-67529:1:exon
so has part: feature:67849-67970:1:exon
so has part: feature:69468-69545:1:exon
so has part: feature:69657-69824:1:exon
so has part: feature:70295-70399:1:exon
so has part: feature:71965-72087:1:exon
so has part: feature:72370-72495:1:exon
so has part: feature:72672-72720:1:exon
so has part: feature:74722-74828:1:exon

XP_028912323.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:67391-67529:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:67849-67970:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:69468-69545:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:69657-69824:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:70295-70399:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:71965-72087:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:72370-72495:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:72672-72720:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:74722-74828:1:exon

LOC114808693
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808693
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 77873..82583
location: region:77873-82583:1
so has part: feature:77873-82583:1:exon
subclass of: SO_0000010

114808693
type: Gene
SIO_000068: ncbigene

position:77873:1
position: 77873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:82583:1
position: 82583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77873-82583:1:exon

LOC114808693
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808693
product: coiled-coil domain-containing protein 183-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_029056512.2
SIO_010081: LOC114808693
subclass of: SO_0000673
so part of: LOC114808693
location: join(77873..78067,80203..80316,80456..80540,82311..82583)
location: region:77873-82583:1
so has part: feature:77873-78067:1:exon
so has part: feature:80203-80316:1:exon
so has part: feature:80456-80540:1:exon
so has part: feature:82311-82583:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:77873-78067:1:exon

position:78067:1
position: 78067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:80203-80316:1:exon

position:80203:1
position: 80203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80316:1
position: 80316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:80456-80540:1:exon

position:80456:1
position: 80456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80540:1
position: 80540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:82311-82583:1:exon

position:82311:1
position: 82311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114808693
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808693
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coiled-coil domain-containing protein 183-like
translation: MEEQLKQKLEAEEARRQQASRSVEKNQELMLTVQNGIDNLFMRLCSISVPGEEDVPTDFKDTFKKLEFCQRKLVHLVSVSKDVPPEEVEKVKHVLEKLAQEDKLNRKVPFEDQDTEITETFNYADMEDYYVPTREEIKRQGKNLIEAKLKASKKKPKN
SIO_010081: LOC114808693
subclass of: SO_0000673
so part of: LOC114808693
location: join(77912..78067,80203..80316,80456..80540,82311..82432)
location: region:77912-82432:1
so has part: feature:77912-78067:1:exon
so has part: feature:80203-80316:1:exon
so has part: feature:80456-80540:1:exon
so has part: feature:82311-82432:1:exon

XP_028912345.1
type: Protein
SIO_000068: ncbiprotein

position:77912:1
position: 77912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:82432:1
position: 82432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77912-78067:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:80203-80316:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:80456-80540:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:82311-82432:1:exon

FBXW5
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: FBXW5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 91000..107604
location: region:91000-107604:1
so has part: feature:91000-107604:1:exon
subclass of: SO_0000010

114808685
type: Gene
SIO_000068: ncbigene

position:91000:1
position: 91000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:107604:1
position: 107604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:91000-107604:1:exon

FBXW5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: FBXW5
product: F-box and WD repeat domain containing 5
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_029056493.1
SIO_010081: FBXW5
subclass of: SO_0000673
so part of: FBXW5
location: join(91000..91195,92853..93010,100168..100342,101264..101412,101611..102074,106043..106190,106374..106405,106692..106866,107364..107604)
location: region:91000-107604:1
so has part: feature:91000-91195:1:exon
so has part: feature:92853-93010:1:exon
so has part: feature:100168-100342:1:exon
so has part: feature:101264-101412:1:exon
so has part: feature:101611-102074:1:exon
so has part: feature:106043-106190:1:exon
so has part: feature:106374-106405:1:exon
so has part: feature:106692-106866:1:exon
so has part: feature:107364-107604:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:91000-91195:1:exon

position:91195:1
position: 91195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:92853-93010:1:exon

position:92853:1
position: 92853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:93010:1
position: 93010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:100168-100342:1:exon

position:100168:1
position: 100168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:100342:1
position: 100342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:101264-101412:1:exon

position:101264:1
position: 101264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:101412:1
position: 101412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:101611-102074:1:exon

position:101611:1
position: 101611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:102074:1
position: 102074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:106043-106190:1:exon

position:106043:1
position: 106043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:106190:1
position: 106190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:106374-106405:1:exon

position:106374:1
position: 106374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:106405:1
position: 106405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:106692-106866:1:exon

position:106692:1
position: 106692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:106866:1
position: 106866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:107364-107604:1:exon

position:107364:1
position: 107364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

FBXW5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: FBXW5
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: F-box/WD repeat-containing protein 5
translation: MDEGAASPLLPNSLVYQIFLNLGHADVLATGLVCRQWQAVACDEFLWKALFYRYYHVDQDVPRHPAAVSWYEEFRWLTDIIPCVEVQTLREHSDQVLHLSFSQKCFLFASCSKNCTIKIWDNDLAISLLHSSNMRPYNWSYTLFSQFNWDDTLLLVSGVFVGPHSSSSGEIAVISLDNFTFLSRVRNKPYDVFGCWLNETKLISGNLHRIGHITSCSVLWLNIAFQGIELENVNMVKRLFKIQNLNASTXRMVMMANCSHHDSPDLLLDYGEQRAATADVFDPADEEEEAGRAPERAGCPGGATCGGRGVVRFLDDLEEQGRPLLSEQELETKVAELLARSRTKLPQGSGGGPPPMGEQEAQKKYLIFTTGCLTYSPRQIGIKQILAHQITMAGLVLGEERWSDEFFDSLDHVIDVQGHIIGMGLFPDQRYLYVNSRSWPALVSDPMHPPPIAEEIDLHVFDLKTMWEVKQALRVLWAYTPNDESFFIFLDISRDLVDSGAEDRRGYIWDQHYNICLAKFQHEDVVNSVAFSPVDQELLLSTNDDTTFKAWRLPRVVRAGQPPHPGMPRFSWLSGQKS
SIO_010081: FBXW5
subclass of: SO_0000673
so part of: FBXW5
location: join(91000..91195,92853..93010,100168..100342,101264..101412,101611..102074,106043..106190,106374..106405,106692..106866,107364..107604)
location: region:91000-107604:1
so has part: feature:91000-91195:1:exon
so has part: feature:92853-93010:1:exon
so has part: feature:100168-100342:1:exon
so has part: feature:101264-101412:1:exon
so has part: feature:101611-102074:1:exon
so has part: feature:106043-106190:1:exon
so has part: feature:106374-106405:1:exon
so has part: feature:106692-106866:1:exon
so has part: feature:107364-107604:1:exon

XP_028912326.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:91000-91195:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:92853-93010:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:100168-100342:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:101264-101412:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:101611-102074:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:106043-106190:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:106374-106405:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:106692-106866:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:107364-107604:1:exon

TRAF2
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: TRAF2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(109616..195459)
location: region:109616-195459:-1
so has part: feature:109616-195459:-1:exon
subclass of: SO_0000010

100681935
type: Gene
SIO_000068: ncbigene

position:109616:-1
position: 109616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:195459:-1
position: 195459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:109616-195459:-1:exon

TRAF2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: TRAF2
product: TNF receptor associated factor 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_029056501.2
SIO_010081: TRAF2
subclass of: SO_0000673
so part of: TRAF2
location: complement(join(109616..111942,115362..115510,125678..125855,126376..126729,129021..129095,135852..135926,157207..157305,160698..160776,163270..163478,194971..195127,195238..195459))
location: region:109616-195459:-1
so has part: feature:195238-195459:-1:exon
so has part: feature:194971-195127:-1:exon
so has part: feature:163270-163478:-1:exon
so has part: feature:160698-160776:-1:exon
so has part: feature:157207-157305:-1:exon
so has part: feature:135852-135926:-1:exon
so has part: feature:129021-129095:-1:exon
so has part: feature:126376-126729:-1:exon
so has part: feature:125678-125855:-1:exon
so has part: feature:115362-115510:-1:exon
so has part: feature:109616-111942:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:195238-195459:-1:exon

position:195238:-1
position: 195238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:194971-195127:-1:exon

position:194971:-1
position: 194971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:195127:-1
position: 195127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:163270-163478:-1:exon

position:163270:-1
position: 163270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:163478:-1
position: 163478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:160698-160776:-1:exon

position:160698:-1
position: 160698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:160776:-1
position: 160776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:157207-157305:-1:exon

position:157207:-1
position: 157207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:157305:-1
position: 157305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:135852-135926:-1:exon

position:135852:-1
position: 135852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:135926:-1
position: 135926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:129021-129095:-1:exon

position:129021:-1
position: 129021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:129095:-1
position: 129095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:126376-126729:-1:exon

position:126376:-1
position: 126376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:126729:-1
position: 126729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:125678-125855:-1:exon

position:125678:-1
position: 125678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:125855:-1
position: 125855
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:115362-115510:-1:exon

position:115362:-1
position: 115362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:115510:-1
position: 115510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:109616-111942:-1:exon

position:111942:-1
position: 111942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TRAF2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: TRAF2
product: TNF receptor associated factor 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_029056500.2
SIO_010081: TRAF2
subclass of: SO_0000673
so part of: TRAF2
location: complement(join(109616..111942,115362..115510,125678..125855,126376..126729,129021..129095,135852..135926,157207..157305,160698..160776,163270..163478,194971..195130,195238..195459))
location: region:109616-195459:-1
so has part: feature:195238-195459:-1:exon
so has part: feature:194971-195130:-1:exon
so has part: feature:163270-163478:-1:exon
so has part: feature:160698-160776:-1:exon
so has part: feature:157207-157305:-1:exon
so has part: feature:135852-135926:-1:exon
so has part: feature:129021-129095:-1:exon
so has part: feature:126376-126729:-1:exon
so has part: feature:125678-125855:-1:exon
so has part: feature:115362-115510:-1:exon
so has part: feature:109616-111942:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:195238-195459:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:194971-195130:-1:exon

position:195130:-1
position: 195130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:163270-163478:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:160698-160776:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:157207-157305:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:135852-135926:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:129021-129095:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:126376-126729:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:125678-125855:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:115362-115510:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:109616-111942:-1:exon

TRAF2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: TRAF2
product: TNF receptor associated factor 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_029056507.2
SIO_010081: TRAF2
subclass of: SO_0000673
so part of: TRAF2
location: complement(join(109616..111942,115362..115510,125678..125855,126376..126729,129021..129095,135852..135926,157207..157305,160698..160776,163270..163478,185179..185261))
location: region:109616-185261:-1
so has part: feature:185179-185261:-1:exon
so has part: feature:163270-163478:-1:exon
so has part: feature:160698-160776:-1:exon
so has part: feature:157207-157305:-1:exon
so has part: feature:135852-135926:-1:exon
so has part: feature:129021-129095:-1:exon
so has part: feature:126376-126729:-1:exon
so has part: feature:125678-125855:-1:exon
so has part: feature:115362-115510:-1:exon
so has part: feature:109616-111942:-1:exon

position:185261:-1
position: 185261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:185179-185261:-1:exon

position:185179:-1
position: 185179
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:163270-163478:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:160698-160776:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:157207-157305:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:135852-135926:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:129021-129095:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:126376-126729:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:125678-125855:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:115362-115510:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:109616-111942:-1:exon

TRAF2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: TRAF2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: TNF receptor-associated factor 2 isoform X2
translation: MDLELGHLGSFPSPAAHLLCDLGAVDIPLYASVSPPVTRGKVVLDNRFPAGEQRQLDTPWSVISSGHGEIKAPKEALLPRQGTGLPLPGSDALRLALKQGIEEPVLMAAANCTPPGSLDLQQPGFLKVILGTKLEDKYLCSACKNILRRPFQAQCGHRYCSYCLNSIISSGPQNCAACVQEGIFEEGISILESSSAFPDNAARREVESLPAFCVNDGCSWKGTIKEYEAHDKICPKFPLTCEGCGKKKIPREKFQDHVKTCGKCRTPCKFQVVGCSEMVENEKLQEHESQWMTQHLCMLLSFVLETKAQHGDIKNILGLGQGDGAIPLTNSFANGPELAPFAELLQRCEALQRKAVTFENIVCVLNREVERVSMTAEACSRQHRLDQEKIEALSTKVQQLERSIGLKDLAMADMQQQIHDMEASTYDGIFIWKITDFSRKRQEALAGRSPAIFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGLNDALLRWPFNQKVTLMLLDQNNREHIIDAFRPDMSSSSFQRPVSDMNIASGCPLFCPVSKMESKNSYVRDDAIFIKAIVDLTGL
SIO_010081: TRAF2
subclass of: SO_0000673
so part of: TRAF2
location: complement(join(111724..111942,115362..115510,125678..125855,126376..126729,129021..129095,135852..135926,157207..157305,160698..160776,163270..163478,194971..195127,195238..195377))
location: region:111724-195377:-1
so has part: feature:195238-195377:-1:exon
so has part: feature:194971-195127:-1:exon
so has part: feature:163270-163478:-1:exon
so has part: feature:160698-160776:-1:exon
so has part: feature:157207-157305:-1:exon
so has part: feature:135852-135926:-1:exon
so has part: feature:129021-129095:-1:exon
so has part: feature:126376-126729:-1:exon
so has part: feature:125678-125855:-1:exon
so has part: feature:115362-115510:-1:exon
so has part: feature:111724-111942:-1:exon

XP_028912334.1
type: Protein
SIO_000068: ncbiprotein

position:111724:-1
position: 111724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:195377:-1
position: 195377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:195238-195377:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:194971-195127:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:163270-163478:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:160698-160776:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:157207-157305:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:135852-135926:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:129021-129095:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:126376-126729:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:125678-125855:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:115362-115510:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:111724-111942:-1:exon

TRAF2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: TRAF2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: TNF receptor-associated factor 2 isoform X1
translation: MDLELGHLGSFPSPAAHLLCDLGAVDIPLYASVSPPVTRGKVVLDNSRFPAGEQRQLDTPWSVISSGHGEIKAPKEALLPRQGTGLPLPGSDALRLALKQGIEEPVLMAAANCTPPGSLDLQQPGFLKVILGTKLEDKYLCSACKNILRRPFQAQCGHRYCSYCLNSIISSGPQNCAACVQEGIFEEGISILESSSAFPDNAARREVESLPAFCVNDGCSWKGTIKEYEAHDKICPKFPLTCEGCGKKKIPREKFQDHVKTCGKCRTPCKFQVVGCSEMVENEKLQEHESQWMTQHLCMLLSFVLETKAQHGDIKNILGLGQGDGAIPLTNSFANGPELAPFAELLQRCEALQRKAVTFENIVCVLNREVERVSMTAEACSRQHRLDQEKIEALSTKVQQLERSIGLKDLAMADMQQQIHDMEASTYDGIFIWKITDFSRKRQEALAGRSPAIFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGLNDALLRWPFNQKVTLMLLDQNNREHIIDAFRPDMSSSSFQRPVSDMNIASGCPLFCPVSKMESKNSYVRDDAIFIKAIVDLTGL
SIO_010081: TRAF2
subclass of: SO_0000673
so part of: TRAF2
location: complement(join(111724..111942,115362..115510,125678..125855,126376..126729,129021..129095,135852..135926,157207..157305,160698..160776,163270..163478,194971..195130,195238..195377))
location: region:111724-195377:-1
so has part: feature:195238-195377:-1:exon
so has part: feature:194971-195130:-1:exon
so has part: feature:163270-163478:-1:exon
so has part: feature:160698-160776:-1:exon
so has part: feature:157207-157305:-1:exon
so has part: feature:135852-135926:-1:exon
so has part: feature:129021-129095:-1:exon
so has part: feature:126376-126729:-1:exon
so has part: feature:125678-125855:-1:exon
so has part: feature:115362-115510:-1:exon
so has part: feature:111724-111942:-1:exon

XP_028912333.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:195238-195377:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:194971-195130:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:163270-163478:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:160698-160776:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:157207-157305:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:135852-135926:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:129021-129095:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:126376-126729:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:125678-125855:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:115362-115510:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:111724-111942:-1:exon

TRAF2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: TRAF2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: TNF receptor-associated factor 2 isoform X4
translation: MAAANCTPPGSLDLQQPGFLKVILGTKLEDKYLCSACKNILRRPFQAQCGHRYCSYCLNSIISSGPQNCAACVQEGIFEEGISILESSSAFPDNAARREVESLPAFCVNDGCSWKGTIKEYEAHDKICPKFPLTCEGCGKKKIPREKFQDHVKTCGKCRTPCKFQVVGCSEMVENEKLQEHESQWMTQHLCMLLSFVLETKAQHGDIKNILGLGQGDGAIPLTNSFANGPELAPFAELLQRCEALQRKAVTFENIVCVLNREVERVSMTAEACSRQHRLDQEKIEALSTKVQQLERSIGLKDLAMADMQQQIHDMEASTYDGIFIWKITDFSRKRQEALAGRSPAIFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGLNDALLRWPFNQKVTLMLLDQNNREHIIDAFRPDMSSSSFQRPVSDMNIASGCPLFCPVSKMESKNSYVRDDAIFIKAIVDLTGL
SIO_010081: TRAF2
subclass of: SO_0000673
so part of: TRAF2
location: complement(join(111724..111942,115362..115510,125678..125855,126376..126729,129021..129095,135852..135926,157207..157305,160698..160776,163270..163457))
location: region:111724-163457:-1
so has part: feature:163270-163457:-1:exon
so has part: feature:160698-160776:-1:exon
so has part: feature:157207-157305:-1:exon
so has part: feature:135852-135926:-1:exon
so has part: feature:129021-129095:-1:exon
so has part: feature:126376-126729:-1:exon
so has part: feature:125678-125855:-1:exon
so has part: feature:115362-115510:-1:exon
so has part: feature:111724-111942:-1:exon

XP_028912340.1
type: Protein
SIO_000068: ncbiprotein

position:163457:-1
position: 163457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163270-163457:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:160698-160776:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:157207-157305:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:135852-135926:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:129021-129095:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:126376-126729:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:125678-125855:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:115362-115510:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:111724-111942:-1:exon

TRAF2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: TRAF2
product: TNF receptor associated factor 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_029056506.2
SIO_010081: TRAF2
subclass of: SO_0000673
so part of: TRAF2
location: complement(join(111807..111942,125678..125855,126376..126729,129021..129095,135852..135926,157207..157305,160698..160776,163270..163478,194971..195130,195238..195458))
location: region:111807-195458:-1
so has part: feature:195238-195458:-1:exon
so has part: feature:194971-195130:-1:exon
so has part: feature:163270-163478:-1:exon
so has part: feature:160698-160776:-1:exon
so has part: feature:157207-157305:-1:exon
so has part: feature:135852-135926:-1:exon
so has part: feature:129021-129095:-1:exon
so has part: feature:126376-126729:-1:exon
so has part: feature:125678-125855:-1:exon
so has part: feature:111807-111942:-1:exon

position:111807:-1
position: 111807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:195458:-1
position: 195458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:195238-195458:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:194971-195130:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:163270-163478:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:160698-160776:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:157207-157305:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:135852-135926:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:129021-129095:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:126376-126729:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:125678-125855:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:111807-111942:-1:exon

TRAF2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: TRAF2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: TNF receptor-associated factor 2 isoform X3
translation: MDLELGHLGSFPSPAAHLLCDLGAVDIPLYASVSPPVTRGKVVLDNSRFPAGEQRQLDTPWSVISSGHGEIKAPKEALLPRQGTGLPLPGSDALRLALKQGIEEPVLMAAANCTPPGSLDLQQPGFLKVILGTKLEDKYLCSACKNILRRPFQAQCGHRYCSYCLNSIISSGPQNCAACVQEGIFEEGISILESSSAFPDNAARREVESLPAFCVNDGCSWKGTIKEYEAHDKICPKFPLTCEGCGKKKIPREKFQDHVKTCGKCRTPCKFQVVGCSEMVENEKLQEHESQWMTQHLCMLLSFVLETKAQHGDIKNILGLGQGDGAIPLTNSFANGPELAPFAELLQRCEALQRKAVTFENIVCVLNREVERVSMTAEACSRQHRLDQEKIEALSTKVQQLERSIGLKDLAMADMQQQIHDMEASTYDGIFIWKITDFSRKRQEALAGRSPAIFSPGDVDAAGSEQQRAHH
SIO_010081: TRAF2
subclass of: SO_0000673
so part of: TRAF2
location: complement(join(111896..111942,125678..125855,126376..126729,129021..129095,135852..135926,157207..157305,160698..160776,163270..163478,194971..195130,195238..195377))
location: region:111896-195377:-1
so has part: feature:195238-195377:-1:exon
so has part: feature:194971-195130:-1:exon
so has part: feature:163270-163478:-1:exon
so has part: feature:160698-160776:-1:exon
so has part: feature:157207-157305:-1:exon
so has part: feature:135852-135926:-1:exon
so has part: feature:129021-129095:-1:exon
so has part: feature:126376-126729:-1:exon
so has part: feature:125678-125855:-1:exon
so has part: feature:111896-111942:-1:exon

XP_028912339.1
type: Protein
SIO_000068: ncbiprotein

position:111896:-1
position: 111896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:195238-195377:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:194971-195130:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:163270-163478:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:160698-160776:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:157207-157305:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:135852-135926:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:129021-129095:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:126376-126729:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:125678-125855:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:111896-111942:-1:exon

LOC114805394
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114805394
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 201219..211465
location: region:201219-211465:1
so has part: feature:201219-211465:1:exon
subclass of: SO_0000010

114805394
type: Gene
SIO_000068: ncbigene

position:201219:1
position: 201219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211465:1
position: 211465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:201219-211465:1:exon

LOC114805394
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114805394
product: endothelial differentiation-related factor 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XM_029056509.2
SIO_010081: LOC114805394
subclass of: SO_0000673
so part of: LOC114805394
location: join(201219..201475,206445..206496,206992..207152,207641..207731,208077..208596)
location: region:201219-208596:1
so has part: feature:201219-201475:1:exon
so has part: feature:206445-206496:1:exon
so has part: feature:206992-207152:1:exon
so has part: feature:207641-207731:1:exon
so has part: feature:208077-208596:1:exon

position:208596:1
position: 208596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:201219-201475:1:exon

position:201475:1
position: 201475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:206445-206496:1:exon

position:206445:1
position: 206445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:206496:1
position: 206496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:206992-207152:1:exon

position:206992:1
position: 206992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:207152:1
position: 207152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:207641-207731:1:exon

position:207641:1
position: 207641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:207731:1
position: 207731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:208077-208596:1:exon

position:208077:1
position: 208077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114805394
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114805394
product: endothelial differentiation-related factor 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XM_029056508.2
SIO_010081: LOC114805394
subclass of: SO_0000673
so part of: LOC114805394
location: join(201223..201475,206445..206496,206992..207152,207638..207731,208077..208596)
location: region:201223-208596:1
so has part: feature:201223-201475:1:exon
so has part: feature:206445-206496:1:exon
so has part: feature:206992-207152:1:exon
so has part: feature:207638-207731:1:exon
so has part: feature:208077-208596:1:exon

position:201223:1
position: 201223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:201223-201475:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:206445-206496:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:206992-207152:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:207638-207731:1:exon

position:207638:1
position: 207638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:208077-208596:1:exon

LOC114805394
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114805394
product: endothelial differentiation-related factor 1, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_029056511.2
SIO_010081: LOC114805394
subclass of: SO_0000673
so part of: LOC114805394
location: join(201232..201475,206445..206496,206992..207152,211222..211465)
location: region:201232-211465:1
so has part: feature:201232-201475:1:exon
so has part: feature:206445-206496:1:exon
so has part: feature:206992-207152:1:exon
so has part: feature:211222-211465:1:exon

position:201232:1
position: 201232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:201232-201475:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:206445-206496:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:206992-207152:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:211222-211465:1:exon

position:211222:1
position: 211222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114805394
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114805394
product: endothelial differentiation-related factor 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
transcript id: XM_039910976.1
SIO_010081: LOC114805394
subclass of: SO_0000673
so part of: LOC114805394
location: join(201233..201475,206445..206496,206992..207152,207641..207731,211222..211465)
location: region:201233-211465:1
so has part: feature:201233-201475:1:exon
so has part: feature:206445-206496:1:exon
so has part: feature:206992-207152:1:exon
so has part: feature:207641-207731:1:exon
so has part: feature:211222-211465:1:exon

position:201233:1
position: 201233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:201233-201475:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:206445-206496:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:206992-207152:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:207641-207731:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:211222-211465:1:exon

LOC114805394
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114805394
product: endothelial differentiation-related factor 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
transcript id: XM_029056510.2
SIO_010081: LOC114805394
subclass of: SO_0000673
so part of: LOC114805394
location: join(201240..201475,206445..206496,206992..207152,207638..207731,211222..211465)
location: region:201240-211465:1
so has part: feature:201240-201475:1:exon
so has part: feature:206445-206496:1:exon
so has part: feature:206992-207152:1:exon
so has part: feature:207638-207731:1:exon
so has part: feature:211222-211465:1:exon

position:201240:1
position: 201240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:201240-201475:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:206445-206496:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:206992-207152:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:207638-207731:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:211222-211465:1:exon

LOC114805394
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114805394
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: endothelial differentiation-related factor 1 isoform X5
translation: MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQGKGLTQKDLATVSSYGGRTLGSHLKQAQRGNENKASKSVVETDLV
SIO_010081: LOC114805394
subclass of: SO_0000673
so part of: LOC114805394
location: join(201398..201475,206445..206496,206992..207152,211222..211326)
location: region:201398-211326:1
so has part: feature:201398-201475:1:exon
so has part: feature:206445-206496:1:exon
so has part: feature:206992-207152:1:exon
so has part: feature:211222-211326:1:exon

XP_028912344.1
type: Protein
SIO_000068: ncbiprotein

position:201398:1
position: 201398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211326:1
position: 211326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:201398-201475:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:206445-206496:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:206992-207152:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:211222-211326:1:exon

LOC114805394
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114805394
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: endothelial differentiation-related factor 1 isoform X3
translation: MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQGKGLTQKDLATKINEKPQVIADYECGRAIPNNQVLGKIERVIGLKLRGKDIGKPLETGPKGK
SIO_010081: LOC114805394
subclass of: SO_0000673
so part of: LOC114805394
location: join(201398..201475,206445..206496,206992..207152,207638..207731,211222..211283)
location: region:201398-211283:1
so has part: feature:201398-201475:1:exon
so has part: feature:206445-206496:1:exon
so has part: feature:206992-207152:1:exon
so has part: feature:207638-207731:1:exon
so has part: feature:211222-211283:1:exon

XP_028912343.1
type: Protein
SIO_000068: ncbiprotein

position:211283:1
position: 211283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:201398-201475:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:206445-206496:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:206992-207152:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:207638-207731:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:211222-211283:1:exon

LOC114805394
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114805394
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: endothelial differentiation-related factor 1 isoform X4
translation: MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQGKGLTQKDLATINEKPQVIADYECGRAIPNNQVLGKIERVIGLKLRGKDIGKPLETGPKGK
SIO_010081: LOC114805394
subclass of: SO_0000673
so part of: LOC114805394
location: join(201398..201475,206445..206496,206992..207152,207641..207731,211222..211283)
location: region:201398-211283:1
so has part: feature:201398-201475:1:exon
so has part: feature:206445-206496:1:exon
so has part: feature:206992-207152:1:exon
so has part: feature:207641-207731:1:exon
so has part: feature:211222-211283:1:exon

XP_039766910.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:201398-201475:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:206445-206496:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:206992-207152:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:207641-207731:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:211222-211283:1:exon

LOC114805394
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114805394
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: endothelial differentiation-related factor 1 isoform X1
translation: MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQGKGLTQKDLATKINEKPQVIADYECGRAIPNNQVLGKIERVIGHRCWVARPLTSVTLPLVNPLRRTDRQ
SIO_010081: LOC114805394
subclass of: SO_0000673
so part of: LOC114805394
location: join(201398..201475,206445..206496,206992..207152,207638..207731,208077..208159)
location: region:201398-208159:1
so has part: feature:201398-201475:1:exon
so has part: feature:206445-206496:1:exon
so has part: feature:206992-207152:1:exon
so has part: feature:207638-207731:1:exon
so has part: feature:208077-208159:1:exon

XP_028912341.1
type: Protein
SIO_000068: ncbiprotein

position:208159:1
position: 208159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:201398-201475:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:206445-206496:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:206992-207152:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:207638-207731:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:208077-208159:1:exon

LOC114805394
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114805394
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: endothelial differentiation-related factor 1 isoform X2
translation: MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQGKGLTQKDLATINEKPQVIADYECGRAIPNNQVLGKIERVIGHRCWVARPLTSVTLPLVNPLRRTDRQ
SIO_010081: LOC114805394
subclass of: SO_0000673
so part of: LOC114805394
location: join(201398..201475,206445..206496,206992..207152,207641..207731,208077..208159)
location: region:201398-208159:1
so has part: feature:201398-201475:1:exon
so has part: feature:206445-206496:1:exon
so has part: feature:206992-207152:1:exon
so has part: feature:207641-207731:1:exon
so has part: feature:208077-208159:1:exon

XP_028912342.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:201398-201475:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:206445-206496:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:206992-207152:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:207641-207731:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:208077-208159:1:exon

LOC114808696
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808696
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(219873..253785)
location: region:219873-253785:-1
so has part: feature:219873-253785:-1:exon
subclass of: SO_0000010

114808696
type: Gene
SIO_000068: ncbigene

position:219873:-1
position: 219873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:253785:-1
position: 253785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219873-253785:-1:exon

LOC114808696
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808696
product: apical endosomal glycoprotein-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_039910977.1
SIO_010081: LOC114808696
subclass of: SO_0000673
so part of: LOC114808696
location: complement(join(219873..220226,220690..220874,228914..229004,230867..231004,231118..231230,231546..231664,232541..232674,234254..234327,236295..236390,237566..237697,238665..238778,239386..239574,241901..242047,242358..242487,243219..243364,244195..244320,244733..244991,246016..246123,253751..253785))
location: region:219873-253785:-1
so has part: feature:253751-253785:-1:exon
so has part: feature:246016-246123:-1:exon
so has part: feature:244733-244991:-1:exon
so has part: feature:244195-244320:-1:exon
so has part: feature:243219-243364:-1:exon
so has part: feature:242358-242487:-1:exon
so has part: feature:241901-242047:-1:exon
so has part: feature:239386-239574:-1:exon
so has part: feature:238665-238778:-1:exon
so has part: feature:237566-237697:-1:exon
so has part: feature:236295-236390:-1:exon
so has part: feature:234254-234327:-1:exon
so has part: feature:232541-232674:-1:exon
so has part: feature:231546-231664:-1:exon
so has part: feature:231118-231230:-1:exon
so has part: feature:230867-231004:-1:exon
so has part: feature:228914-229004:-1:exon
so has part: feature:220690-220874:-1:exon
so has part: feature:219873-220226:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:253751-253785:-1:exon

position:253751:-1
position: 253751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:246016-246123:-1:exon

position:246016:-1
position: 246016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:246123:-1
position: 246123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:244733-244991:-1:exon

position:244733:-1
position: 244733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:244991:-1
position: 244991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:244195-244320:-1:exon

position:244195:-1
position: 244195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:244320:-1
position: 244320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:243219-243364:-1:exon

position:243219:-1
position: 243219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:243364:-1
position: 243364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:242358-242487:-1:exon

position:242358:-1
position: 242358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:242487:-1
position: 242487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:241901-242047:-1:exon

position:241901:-1
position: 241901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:242047:-1
position: 242047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:239386-239574:-1:exon

position:239386:-1
position: 239386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:239574:-1
position: 239574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:238665-238778:-1:exon

position:238665:-1
position: 238665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:238778:-1
position: 238778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:237566-237697:-1:exon

position:237566:-1
position: 237566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:237697:-1
position: 237697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:236295-236390:-1:exon

position:236295:-1
position: 236295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:236390:-1
position: 236390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:234254-234327:-1:exon

position:234254:-1
position: 234254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:234327:-1
position: 234327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:232541-232674:-1:exon

position:232541:-1
position: 232541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:232674:-1
position: 232674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:231546-231664:-1:exon

position:231546:-1
position: 231546
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:231664:-1
position: 231664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:231118-231230:-1:exon

position:231118:-1
position: 231118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:231230:-1
position: 231230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:230867-231004:-1:exon

position:230867:-1
position: 230867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:231004:-1
position: 231004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:228914-229004:-1:exon

position:228914:-1
position: 228914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:229004:-1
position: 229004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:220690-220874:-1:exon

position:220690:-1
position: 220690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:220874:-1
position: 220874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:219873-220226:-1:exon

position:220226:-1
position: 220226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808696
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808696
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: apical endosomal glycoprotein-like
translation: MGGRPAPHSDLTWSIHLGWYMVIGAHREKDATTVVQQTSTVHEAAPACEMHLWYRGWGEGEETPDPGELLVEVTHGQETLMLWQSTSPVGDFWKELVVPMGRVPGSFWAQCPQGHFCCARRACVEPDLVCDGEDDCGDRLDGDKEEEASHSATGMVTDLEDFESGLEPWEIAQGWVLSNGSTASGLSAQHRRDHGKNSVTADLLLISARFRGGQPPPLPAALDPDPHVRPQGPGLLPVLEPGRRPGGGLGQRCGSDLIQSALPAEDPCSPGQFACDDRCLRNEQRCDFIAQCTDSTDEEGCGHFLSLQKALGKLLGLAWAHTLPLGPSGPDCTLRLAYFLQSGPGAGQSCRVTSRRAPCGWYPQRRSDVVYNHTMGKGYFMYLDPTAPSARGPRVHLLTAFQGP
SIO_010081: LOC114808696
subclass of: SO_0000673
so part of: LOC114808696
location: complement(join(232666..232674,234254..234327,236295..236390,237566..237697,238665..238778,239386..239574,241901..242047,242358..242487,243219..243364,244195..244320,244733..244784))
location: region:232666-244784:-1
so has part: feature:244733-244784:-1:exon
so has part: feature:244195-244320:-1:exon
so has part: feature:243219-243364:-1:exon
so has part: feature:242358-242487:-1:exon
so has part: feature:241901-242047:-1:exon
so has part: feature:239386-239574:-1:exon
so has part: feature:238665-238778:-1:exon
so has part: feature:237566-237697:-1:exon
so has part: feature:236295-236390:-1:exon
so has part: feature:234254-234327:-1:exon
so has part: feature:232666-232674:-1:exon

XP_039766911.1
type: Protein
SIO_000068: ncbiprotein

position:232666:-1
position: 232666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:244784:-1
position: 244784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:244733-244784:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:244195-244320:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:243219-243364:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:242358-242487:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:241901-242047:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:239386-239574:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:238665-238778:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:237566-237697:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:236295-236390:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:234254-234327:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:232666-232674:-1:exon

LOC114808686
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808686
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(254462..>260921)
location: region:254462-260921:-1
so has part: feature:254462-260921:-1:exon
subclass of: SO_0000010

114808686
type: Gene
SIO_000068: ncbigene

position:254462:-1
position: 254462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:260921:-1
position: 260921
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254462-260921:-1:exon

LOC114808686
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808686
product: 14 kDa phosphohistidine phosphatase-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_029056494.2
SIO_010081: LOC114808686
subclass of: SO_0000673
so part of: LOC114808686
location: complement(join(254462..254612,260778..>260921))
location: region:254462-260921:-1
so has part: feature:260778-260921:-1:exon
so has part: feature:254462-254612:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:260778-260921:-1:exon

position:260778:-1
position: 260778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:254462-254612:-1:exon

position:254612:-1
position: 254612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808686
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808686
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 14 kDa phosphohistidine phosphatase-like
translation: ADRSPPAVIYDKVAGEIQKQGYNCECLGGGRISLQSQEKKIHVYSYSMGFGRAQHSTAEKIKAKYPDYEVTWADDSY
SIO_010081: LOC114808686
subclass of: SO_0000673
so part of: LOC114808686
location: complement(join(254523..254612,260778..>260921))
location: region:254523-260921:-1
so has part: feature:260778-260921:-1:exon
so has part: feature:254523-254612:-1:exon

XP_028912327.1
type: Protein
SIO_000068: ncbiprotein

position:254523:-1
position: 254523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:260778-260921:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:254523-254612:-1:exon

LOC114808695
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808695
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 262781..265919
location: region:262781-265919:1
so has part: feature:262781-265919:1:exon
subclass of: SO_0000011

114808695
type: Gene
SIO_000068: ncbigene

position:262781:1
position: 262781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:265919:1
position: 265919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:262781-265919:1:exon

LOC114808695
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9258
nc RNA class: lncRNA
gene: LOC114808695
product: uncharacterized LOC114808695
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
transcript id: XR_003756503.1
SIO_010081: LOC114808695
subclass of: SO_0000673
so part of: LOC114808695
location: join(262781..262865,264244..264351,265641..265919)
location: region:262781-265919:1
so has part: feature:262781-262865:1:exon
so has part: feature:264244-264351:1:exon
so has part: feature:265641-265919:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:262781-262865:1:exon

position:262865:1
position: 262865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:264244-264351:1:exon

position:264244:1
position: 264244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:264351:1
position: 264351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:265641-265919:1:exon

position:265641:1
position: 265641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114808680
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808680
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 269135..283752
location: region:269135-283752:1
so has part: feature:269135-283752:1:exon
subclass of: SO_0000010

114808680
type: Gene
SIO_000068: ncbigene

position:269135:1
position: 269135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:283752:1
position: 283752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:269135-283752:1:exon

LOC114808680
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808680
product: coiled-coil domain-containing protein 183-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_029056484.2
SIO_010081: LOC114808680
subclass of: SO_0000673
so part of: LOC114808680
location: join(269135..269318,269638..269759,270643..270720,270832..270999,271469..271573,273139..273261,273544..273669,273843..273894,275896..275996,277910..278070,279070..279235,281372..281485,281625..281709,283480..283752)
location: region:269135-283752:1
so has part: feature:269135-269318:1:exon
so has part: feature:269638-269759:1:exon
so has part: feature:270643-270720:1:exon
so has part: feature:270832-270999:1:exon
so has part: feature:271469-271573:1:exon
so has part: feature:273139-273261:1:exon
so has part: feature:273544-273669:1:exon
so has part: feature:273843-273894:1:exon
so has part: feature:275896-275996:1:exon
so has part: feature:277910-278070:1:exon
so has part: feature:279070-279235:1:exon
so has part: feature:281372-281485:1:exon
so has part: feature:281625-281709:1:exon
so has part: feature:283480-283752:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:269135-269318:1:exon

position:269318:1
position: 269318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:269638-269759:1:exon

position:269638:1
position: 269638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:269759:1
position: 269759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:270643-270720:1:exon

position:270643:1
position: 270643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:270720:1
position: 270720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:270832-270999:1:exon

position:270832:1
position: 270832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:270999:1
position: 270999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:271469-271573:1:exon

position:271469:1
position: 271469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:271573:1
position: 271573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:273139-273261:1:exon

position:273139:1
position: 273139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:273261:1
position: 273261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:273544-273669:1:exon

position:273544:1
position: 273544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:273669:1
position: 273669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:273843-273894:1:exon

position:273843:1
position: 273843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:273894:1
position: 273894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:275896-275996:1:exon

position:275896:1
position: 275896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:275996:1
position: 275996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:277910-278070:1:exon

position:277910:1
position: 277910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:278070:1
position: 278070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:279070-279235:1:exon

position:279070:1
position: 279070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:279235:1
position: 279235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:281372-281485:1:exon

position:281372:1
position: 281372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:281485:1
position: 281485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:281625-281709:1:exon

position:281625:1
position: 281625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:281709:1
position: 281709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:283480-283752:1:exon

position:283480:1
position: 283480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114808680
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808680
product: coiled-coil domain-containing protein 183-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_029056485.2
SIO_010081: LOC114808680
subclass of: SO_0000673
so part of: LOC114808680
location: join(269140..269318,269638..269759,270643..270720,270832..270999,271469..271573,273139..273261,273544..273669,273846..273894,275896..275996,277910..278070,279070..279235,281372..281485,281625..281709,283480..283752)
location: region:269140-283752:1
so has part: feature:269140-269318:1:exon
so has part: feature:269638-269759:1:exon
so has part: feature:270643-270720:1:exon
so has part: feature:270832-270999:1:exon
so has part: feature:271469-271573:1:exon
so has part: feature:273139-273261:1:exon
so has part: feature:273544-273669:1:exon
so has part: feature:273846-273894:1:exon
so has part: feature:275896-275996:1:exon
so has part: feature:277910-278070:1:exon
so has part: feature:279070-279235:1:exon
so has part: feature:281372-281485:1:exon
so has part: feature:281625-281709:1:exon
so has part: feature:283480-283752:1:exon

position:269140:1
position: 269140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:269140-269318:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:269638-269759:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:270643-270720:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:270832-270999:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:271469-271573:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:273139-273261:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:273544-273669:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:273846-273894:1:exon

position:273846:1
position: 273846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:275896-275996:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:277910-278070:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:279070-279235:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:281372-281485:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:281625-281709:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:283480-283752:1:exon

LOC114808680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808680
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coiled-coil domain-containing protein 183-like isoform X1
translation: MALRGGTQQEEEEESEPGGAEATMKVQGGKDIRDQIQELRAIIRLQEQGRVLHTQSSKQRVNQNKDTVGLLQGSIRQRTREWQMARKHDERSISWAFREEHLLKLATNKTSMESVQQKLQKYIYDRVKVHDALVHLLRRRAAVLEDLQRELLRLRRLEEPSKETELQHQRIRQLENSIEKMEMKCSSAQSIHQMYENSLASLKQELASYPSKLSNMANMVGAYQSALQDMTQMAQETIEITEVTKLDAAKAETALIAEHEAQESQLNAQKKQVDKAWVRDTGDRHRQQSRRDTDFSFLGEDLTKGKNPEPSKSQMEYEAQIISEVEKVKTAVQCSNIWDITGRFQAQKVTEEKLVQQIAECEQKRKELKALLHKLDLERTELKYHQTPSSIRYKQMEEQLKQKLEAEEARRQQASRSVEKNQELMLTVQNGIDNLFMRLCSISVPGEEDVPTDFKDTFKKLEFCQRKLVHLVSVSKDVPPEEVEKVKHVLEKLAQEDKLNRKVPFEDQDTEITETFNYADMEDYYVPTREEIKRQGKNLIEAKLKASKKKPKN
SIO_010081: LOC114808680
subclass of: SO_0000673
so part of: LOC114808680
location: join(269180..269318,269638..269759,270643..270720,270832..270999,271469..271573,273139..273261,273544..273669,273843..273894,275896..275996,277910..278070,279070..279235,281372..281485,281625..281709,283480..283601)
location: region:269180-283601:1
so has part: feature:269180-269318:1:exon
so has part: feature:269638-269759:1:exon
so has part: feature:270643-270720:1:exon
so has part: feature:270832-270999:1:exon
so has part: feature:271469-271573:1:exon
so has part: feature:273139-273261:1:exon
so has part: feature:273544-273669:1:exon
so has part: feature:273843-273894:1:exon
so has part: feature:275896-275996:1:exon
so has part: feature:277910-278070:1:exon
so has part: feature:279070-279235:1:exon
so has part: feature:281372-281485:1:exon
so has part: feature:281625-281709:1:exon
so has part: feature:283480-283601:1:exon

XP_028912317.1
type: Protein
SIO_000068: ncbiprotein

position:269180:1
position: 269180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:283601:1
position: 283601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:269180-269318:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:269638-269759:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:270643-270720:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:270832-270999:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:271469-271573:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:273139-273261:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:273544-273669:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:273843-273894:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:275896-275996:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:277910-278070:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:279070-279235:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:281372-281485:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:281625-281709:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:283480-283601:1:exon

LOC114808680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808680
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coiled-coil domain-containing protein 183-like isoform X2
translation: MALRGGTQQEEEEESEPGGAEATMKVQGGKDIRDQIQELRAIIRLQEQGRVLHTQSSKQRVNQNKDTVGLLQGSIRQRTREWQMARKHDERSISWAFREEHLLKLATNKTSMESVQQKLQKYIYDRVKVHDALVHLLRRRAAVLEDLQRELLRLRRLEEPSKETELQHQRIRQLENSIEKMEMKCSSAQSIHQMYENSLASLKQELASYPSKLSNMANMVGAYQSALQDMTQMAQETIEITEVTKLDAAKAETALIAEHEAQESQLNAQKKQVDKAWVRDTGDRHRQSRRDTDFSFLGEDLTKGKNPEPSKSQMEYEAQIISEVEKVKTAVQCSNIWDITGRFQAQKVTEEKLVQQIAECEQKRKELKALLHKLDLERTELKYHQTPSSIRYKQMEEQLKQKLEAEEARRQQASRSVEKNQELMLTVQNGIDNLFMRLCSISVPGEEDVPTDFKDTFKKLEFCQRKLVHLVSVSKDVPPEEVEKVKHVLEKLAQEDKLNRKVPFEDQDTEITETFNYADMEDYYVPTREEIKRQGKNLIEAKLKASKKKPKN
SIO_010081: LOC114808680
subclass of: SO_0000673
so part of: LOC114808680
location: join(269180..269318,269638..269759,270643..270720,270832..270999,271469..271573,273139..273261,273544..273669,273846..273894,275896..275996,277910..278070,279070..279235,281372..281485,281625..281709,283480..283601)
location: region:269180-283601:1
so has part: feature:269180-269318:1:exon
so has part: feature:269638-269759:1:exon
so has part: feature:270643-270720:1:exon
so has part: feature:270832-270999:1:exon
so has part: feature:271469-271573:1:exon
so has part: feature:273139-273261:1:exon
so has part: feature:273544-273669:1:exon
so has part: feature:273846-273894:1:exon
so has part: feature:275896-275996:1:exon
so has part: feature:277910-278070:1:exon
so has part: feature:279070-279235:1:exon
so has part: feature:281372-281485:1:exon
so has part: feature:281625-281709:1:exon
so has part: feature:283480-283601:1:exon

XP_028912318.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:269180-269318:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:269638-269759:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:270643-270720:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:270832-270999:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:271469-271573:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:273139-273261:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:273544-273669:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:273846-273894:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:275896-275996:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:277910-278070:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:279070-279235:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:281372-281485:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:281625-281709:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:283480-283601:1:exon

LOC114808687
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808687
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 288520..306217
location: region:288520-306217:1
so has part: feature:288520-306217:1:exon
subclass of: SO_0000010

114808687
type: Gene
SIO_000068: ncbigene

position:288520:1
position: 288520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:306217:1
position: 306217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:288520-306217:1:exon

LOC114808687
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808687
product: rab-like protein 6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XM_029056495.2
SIO_010081: LOC114808687
subclass of: SO_0000673
so part of: LOC114808687
location: join(288520..288812,297789..297923,306021..306217)
location: region:288520-306217:1
so has part: feature:288520-288812:1:exon
so has part: feature:297789-297923:1:exon
so has part: feature:306021-306217:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:288520-288812:1:exon

position:288812:1
position: 288812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:297789-297923:1:exon

position:297789:1
position: 297789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:297923:1
position: 297923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:306021-306217:1:exon

position:306021:1
position: 306021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114808687
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808687
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: rab-like protein 6
translation: MLSALKKLVGSEAGAGRERPIPAGLQSMNRALQRRFAKGVQYNMKIVIRGDRNTGKTTLWHRLQGKAFIEEYIPTQEIQVTSIHWNYKTTDDIVKVEVWDVVDKGKRAPTSSAASSGSAACSPPIGENKSFPFLRIRPAVLFAEPLLCAKPRA
SIO_010081: LOC114808687
subclass of: SO_0000673
so part of: LOC114808687
location: join(288683..288812,297789..297923,306021..306217)
location: region:288683-306217:1
so has part: feature:288683-288812:1:exon
so has part: feature:297789-297923:1:exon
so has part: feature:306021-306217:1:exon

XP_028912328.1
type: Protein
SIO_000068: ncbiprotein

position:288683:1
position: 288683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:288683-288812:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:297789-297923:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:306021-306217:1:exon

LOC120638184
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC120638184
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2202077..2245685)
location: region:2202077-2245685:-1
so has part: feature:2202077-2245685:-1:exon
subclass of: SO_0000011

120638184
type: Gene
SIO_000068: ncbigene

position:2202077:-1
position: 2202077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2245685:-1
position: 2245685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2202077-2245685:-1:exon

LOC120638184
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9258
nc RNA class: lncRNA
gene: LOC120638184
product: uncharacterized LOC120638184
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_005659700.1
SIO_010081: LOC120638184
subclass of: SO_0000673
so part of: LOC120638184
location: complement(join(2202077..2202135,2229654..2229745,2245344..2245685))
location: region:2202077-2245685:-1
so has part: feature:2245344-2245685:-1:exon
so has part: feature:2229654-2229745:-1:exon
so has part: feature:2202077-2202135:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2245344-2245685:-1:exon

position:2245344:-1
position: 2245344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2229654-2229745:-1:exon

position:2229654:-1
position: 2229654
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2229745:-1
position: 2229745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2202077-2202135:-1:exon

position:2202135:-1
position: 2202135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808689
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808689
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2202131..2227261
location: region:2202131-2227261:1
so has part: feature:2202131-2227261:1:exon
subclass of: SO_0000011

114808689
type: Gene
SIO_000068: ncbigene

position:2202131:1
position: 2202131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2227261:1
position: 2227261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2202131-2227261:1:exon

LOC114808689
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9258
nc RNA class: lncRNA
gene: LOC114808689
product: uncharacterized LOC114808689
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_005659701.1
SIO_010081: LOC114808689
subclass of: SO_0000673
so part of: LOC114808689
location: join(2202131..2202228,2227161..2227261)
location: region:2202131-2227261:1
so has part: feature:2202131-2202228:1:exon
so has part: feature:2227161-2227261:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2202131-2202228:1:exon

position:2202228:1
position: 2202228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2227161-2227261:1:exon

position:2227161:1
position: 2227161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114808691
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808691
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2343856..2351472)
location: region:2343856-2351472:-1
so has part: feature:2343856-2351472:-1:exon
subclass of: SO_0000010

114808691
type: Gene
SIO_000068: ncbigene

position:2343856:-1
position: 2343856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2351472:-1
position: 2351472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2343856-2351472:-1:exon

LOC114808691
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808691
product: synaptonemal complex protein 3-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_029056499.2
SIO_010081: LOC114808691
subclass of: SO_0000673
so part of: LOC114808691
location: complement(join(2343856..2344246,2344443..2344547,2348177..2348275,2349301..2349453,2351140..2351472))
location: region:2343856-2351472:-1
so has part: feature:2351140-2351472:-1:exon
so has part: feature:2349301-2349453:-1:exon
so has part: feature:2348177-2348275:-1:exon
so has part: feature:2344443-2344547:-1:exon
so has part: feature:2343856-2344246:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2351140-2351472:-1:exon

position:2351140:-1
position: 2351140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2349301-2349453:-1:exon

position:2349301:-1
position: 2349301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2349453:-1
position: 2349453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2348177-2348275:-1:exon

position:2348177:-1
position: 2348177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2348275:-1
position: 2348275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2344443-2344547:-1:exon

position:2344443:-1
position: 2344443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2344547:-1
position: 2344547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2343856-2344246:-1:exon

position:2344246:-1
position: 2344246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808691
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808691
product: synaptonemal complex protein 3-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_029056498.2
SIO_010081: LOC114808691
subclass of: SO_0000673
so part of: LOC114808691
location: complement(join(2343856..2344246,2344443..2344547,2348177..2348275,2349301..2349400,2351140..2351463))
location: region:2343856-2351463:-1
so has part: feature:2351140-2351463:-1:exon
so has part: feature:2349301-2349400:-1:exon
so has part: feature:2348177-2348275:-1:exon
so has part: feature:2344443-2344547:-1:exon
so has part: feature:2343856-2344246:-1:exon

position:2351463:-1
position: 2351463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2351140-2351463:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2349301-2349400:-1:exon

position:2349400:-1
position: 2349400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2348177-2348275:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2344443-2344547:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2343856-2344246:-1:exon

LOC114808691
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9258
gene: LOC114808691
product: synaptonemal complex protein 3-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_003756501.2
SIO_010081: LOC114808691
so part of: LOC114808691
location: complement(join(2343856..2344246,2348177..2348275,2349301..2349400,2351140..2351459))
location: region:2343856-2351459:-1
so has part: feature:2351140-2351459:-1:exon
so has part: feature:2349301-2349400:-1:exon
so has part: feature:2348177-2348275:-1:exon
so has part: feature:2343856-2344246:-1:exon

position:2351459:-1
position: 2351459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2351140-2351459:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2349301-2349400:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2348177-2348275:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2343856-2344246:-1:exon

LOC114808691
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808691
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: synaptonemal complex protein 3-like
translation: MIQKDYSLHFLTIFKQWDKDIQKTEECKEKLGKLIYEQQKVCQQLRLIQSQRLNTIKQICEQFSKVNEEMEKKNEIVLIKSQNEIEKEFLAQRSKIRLDSRE
SIO_010081: LOC114808691
subclass of: SO_0000673
so part of: LOC114808691
location: complement(join(2344238..2344246,2344443..2344547,2348177..2348275,2349301..2349396))
location: region:2344238-2349396:-1
so has part: feature:2349301-2349396:-1:exon
so has part: feature:2348177-2348275:-1:exon
so has part: feature:2344443-2344547:-1:exon
so has part: feature:2344238-2344246:-1:exon

XP_028912331.1
type: Protein
SIO_000068: ncbiprotein

position:2344238:-1
position: 2344238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2349396:-1
position: 2349396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2349301-2349396:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2348177-2348275:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2344443-2344547:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2344238-2344246:-1:exon

LOC114808691
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808691
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: synaptonemal complex protein 3-like
translation: MIQKDYSLHFLTIFKQWDKDIQKTEECKEKLGKLIYEQQKVCQQLRLIQSQRLNTIKQICEQFSKVNEEMEKKNEIVLIKSQNEIEKEFLAQRSKIRLDSRE
SIO_010081: LOC114808691
subclass of: SO_0000673
so part of: LOC114808691
location: complement(join(2344238..2344246,2344443..2344547,2348177..2348275,2349301..2349396))
location: region:2344238-2349396:-1
so has part: feature:2349301-2349396:-1:exon
so has part: feature:2348177-2348275:-1:exon
so has part: feature:2344443-2344547:-1:exon
so has part: feature:2344238-2344246:-1:exon

XP_028912332.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2349301-2349396:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2348177-2348275:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2344443-2344547:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2344238-2344246:-1:exon

LOC114808690
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808690
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2395353..2408224
location: region:2395353-2408224:1
so has part: feature:2395353-2408224:1:exon
subclass of: SO_0000010

114808690
type: Gene
SIO_000068: ncbigene

position:2395353:1
position: 2395353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2408224:1
position: 2408224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2395353-2408224:1:exon

LOC114808690
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808690
product: putative olfactory receptor 14L1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
transcript id: XM_039910974.1
SIO_010081: LOC114808690
subclass of: SO_0000673
so part of: LOC114808690
location: join(2395353..2395415,2396889..2396962,2397122..2397307,2403987..2404164,2405416..2405564,2407681..2408224)
location: region:2395353-2408224:1
so has part: feature:2395353-2395415:1:exon
so has part: feature:2396889-2396962:1:exon
so has part: feature:2397122-2397307:1:exon
so has part: feature:2403987-2404164:1:exon
so has part: feature:2405416-2405564:1:exon
so has part: feature:2407681-2408224:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2395353-2395415:1:exon

position:2395415:1
position: 2395415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2396889-2396962:1:exon

position:2396889:1
position: 2396889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2396962:1
position: 2396962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2397122-2397307:1:exon

position:2397122:1
position: 2397122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2397307:1
position: 2397307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2403987-2404164:1:exon

position:2403987:1
position: 2403987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2404164:1
position: 2404164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2405416-2405564:1:exon

position:2405416:1
position: 2405416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2405564:1
position: 2405564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2407681-2408224:1:exon

position:2407681:1
position: 2407681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114808690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808690
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: putative olfactory receptor 14L1
translation: MTICSEILTSEFGQSGISEYWGYCFSPFISRWSSTFNCGFEHISLMTSKKDMANQKAVMELPRLGFSEVRKPHLVQVALFLLVYLGALMGNLIILALTAFNRCLYTPIPTASVSSSTLLSQFTPAIQSVTNTCRSHLQNTAKMHTFLYIQTTIVLVLALKNSRLHYSITFPEQLPSTTFSLTTQNIYLEMANSTKVMEFALLGYSEVWEWELVHAAIGSYRKMAANLWLGGGLSNLMNMTNTYSVPLGGSNVIHQFSSESPHIIKLFQSSRKLQEYGVTSFSSLLASTCFVSIVISYMGFFRVMLRIPTAEGQDKAFSTCLPHLSIITIFVSNSDEAYRKPVSNSHSVLDMLISPFCYGATPRPPAPNPNPLVYNLRNRDLKMALGTVLVKKSINRR
SIO_010081: LOC114808690
subclass of: SO_0000673
so part of: LOC114808690
location: join(2395353..2395415,2396889..2396962,2397122..2397307,2403987..2404164,2405416..2405564,2407681..2408224)
location: region:2395353-2408224:1
so has part: feature:2395353-2395415:1:exon
so has part: feature:2396889-2396962:1:exon
so has part: feature:2397122-2397307:1:exon
so has part: feature:2403987-2404164:1:exon
so has part: feature:2405416-2405564:1:exon
so has part: feature:2407681-2408224:1:exon

XP_039766908.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2395353-2395415:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2396889-2396962:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2397122-2397307:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2403987-2404164:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2405416-2405564:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2407681-2408224:1:exon

LOC114808682
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808682
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2430575..2447572
location: region:2430575-2447572:1
so has part: feature:2430575-2447572:1:exon
subclass of: SO_0000011

114808682
type: Gene
SIO_000068: ncbigene

position:2430575:1
position: 2430575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2447572:1
position: 2447572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2430575-2447572:1:exon

LOC114808682
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9258
nc RNA class: lncRNA
gene: LOC114808682
product: uncharacterized LOC114808682, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_003756499.1
SIO_010081: LOC114808682
subclass of: SO_0000673
so part of: LOC114808682
location: join(2430575..2430655,2445962..2446053,2447418..2447572)
location: region:2430575-2447572:1
so has part: feature:2430575-2430655:1:exon
so has part: feature:2445962-2446053:1:exon
so has part: feature:2447418-2447572:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2430575-2430655:1:exon

position:2430655:1
position: 2430655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2445962-2446053:1:exon

position:2445962:1
position: 2445962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2446053:1
position: 2446053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2447418-2447572:1:exon

position:2447418:1
position: 2447418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114808682
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9258
nc RNA class: lncRNA
gene: LOC114808682
product: uncharacterized LOC114808682, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_003756498.1
SIO_010081: LOC114808682
subclass of: SO_0000673
so part of: LOC114808682
location: join(2443965..2444495,2445962..2446053,2447418..2447572)
location: region:2443965-2447572:1
so has part: feature:2443965-2444495:1:exon
so has part: feature:2445962-2446053:1:exon
so has part: feature:2447418-2447572:1:exon

position:2443965:1
position: 2443965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2443965-2444495:1:exon

position:2444495:1
position: 2444495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2445962-2446053:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2447418-2447572:1:exon

LOC114808681
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808681
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2449935..2450820)
location: region:2449935-2450820:-1
so has part: feature:2449935-2450820:-1:exon
subclass of: SO_0000011

114808681
type: Gene
SIO_000068: ncbigene

position:2449935:-1
position: 2449935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2450820:-1
position: 2450820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2449935-2450820:-1:exon

LOC114808681
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9258
nc RNA class: lncRNA
gene: LOC114808681
product: uncharacterized LOC114808681
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_005659698.1
SIO_010081: LOC114808681
subclass of: SO_0000673
so part of: LOC114808681
location: complement(join(2449935..2450322,2450524..2450820))
location: region:2449935-2450820:-1
so has part: feature:2450524-2450820:-1:exon
so has part: feature:2449935-2450322:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2450524-2450820:-1:exon

position:2450524:-1
position: 2450524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2449935-2450322:-1:exon

position:2450322:-1
position: 2450322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition