Ornithorhynchus anatinus isolate Pmale09 chromosome Y2, mOrnAna1.pri.v4, whole genome shotgun sequence.
type: Entry
definition: Ornithorhynchus anatinus isolate Pmale09 chromosome Y2, mOrnAna1.pri.v4, whole genome shotgun sequence.
sequence version: NC_053176.1
sequence date: 2021-03-08
sequence: sequence
division: CON
label: NC_053176.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA534073
dblink: SAMN08537700
keyword: WGS
keyword: RefSeq
source: Ornithorhynchus anatinus (platypus)
organism: Ornithorhynchus anatinus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM026824.1.\nAssembly name: mOrnAna1.pri.v4\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2020/11/06. The original whole-genome shotgun project has the\naccession RZJT00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 06-DEC-2019\nAssembly Method :: FALCON v. 5.1.1; FALCON Unzip v. 1.0.2;\n purge_haplotigs v. bit 7.10.2018;\n scaff10X v. git 4.28.2018; Bionano Solve\n DLS v. 3.2.1; Salsa2 HiC v. 2.0;\n smrtanalysis Arrow polishing & gap\n fillingt v. 5.1.0.26412; longranger align\n v. 2.2.2; freebayes v. 1.2.0; gEVAL\n manual curation v. 2019-12-06\nAssembly Name :: mOrnAna1.pri.v4\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 58.8x\nSequencing Technology :: PacBio RSII; 10X Genomics linked reads;\n Bionano Genomics DLS; Dovetail Genomics\n HiC; Arima Genomics\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Ornithorhynchus anatinus Annotation\n Release 105\nAnnotation Version :: 105\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.6\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 4600510
topology: linear
so has quality: SO_0000987
location: 1..4600510
location: region:1-4600510:1
RO_0002162: 9258

NC_053176
type: RefSeq
SIO_000068: refseq

PRJNA534073
type: BioProject
SIO_000068: bioproject

SAMN08537700
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4600510:1
position: 4600510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4600510:1:source
so part of: sequence
organism: Ornithorhynchus anatinus
mol type: genomic DNA
isolate: Pmale09
chromosome: Y2
sex: male
tissue type: liver; muscle

9258
type: Taxonomy
SIO_000068: taxonomy

LOC114808672
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808672
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 224645..225954
location: region:224645-225954:1
so has part: feature:224645-225954:1:exon
subclass of: SO_0000011

114808672
type: Gene
SIO_000068: ncbigene

position:224645:1
position: 224645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:225954:1
position: 225954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224645-225954:1:exon

LOC114808672
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9258
nc RNA class: lncRNA
gene: LOC114808672
product: uncharacterized LOC114808672
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XR_003756492.2
SIO_010081: LOC114808672
subclass of: SO_0000673
so part of: LOC114808672
location: join(224645..224793,225449..225954)
location: region:224645-225954:1
so has part: feature:224645-224793:1:exon
so has part: feature:225449-225954:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:224645-224793:1:exon

position:224793:1
position: 224793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:225449-225954:1:exon

position:225449:1
position: 225449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114808663
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808663
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(239201..241860)
location: region:239201-241860:-1
so has part: feature:239201-241860:-1:exon
subclass of: SO_0000010

114808663
type: Gene
SIO_000068: ncbigene

position:239201:-1
position: 239201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:241860:-1
position: 241860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239201-241860:-1:exon

LOC114808663
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808663
product: forkhead box protein C1-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_029056452.2
SIO_010081: LOC114808663
subclass of: SO_0000673
so part of: LOC114808663
location: complement(239201..241860)
location: region:239201-241860:-1
so has part: feature:239201-241860:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:239201-241860:-1:exon

LOC114808663
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808663
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: forkhead box protein C1-like
translation: MQARYSVSSPNSLGVVPYLGGEQSYYRAAAAAAGGGYTAMPAPMSMYSHPAHEQYPGGMARAYGPYTPQPQPKDMVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRDNKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFLRRRRRFKKKDAVKDKEEKDRLHLKEPPQPPHPAPPRQQQQQQQQHQPQQQQPEPPDGGVAGGPGAPPPPPPPPPPPVRIQDIKTENGTCSSPPQAGSPASALGSGSHAAVPKIESPDSSSSSSSSSSSSLSSSGSPSHRTLSLEGSDHPPLQHPQHPQHPQHPQHSHPGQPPPPPPPPGQGFSVDNIMTSLRGSPQGSAGDLGPGLLASPAASRTGLPGSLSLSAYSPGPGSLYGSPCSQSAAGAAGGGGGPSPGGGGGGGGGGGGGGGGPNPNGPGTYHCNMQAMSLYAAGERAGHLAGGPGAAGGAGVDEPLPDYSLPAAGGGGGPGGGGPGGPGGPGGPGGPGGGSSSGLGHAGQDAAHHPAAHQGRLASWYLNQAAGDLGHLASAAAAAAAAAAAGGGYPAQQQNFHSVREMFEAQRLGLNNSPVNGNSSCQMAFPSSQSLYRTSGAFVYDCSKF
SIO_010081: LOC114808663
subclass of: SO_0000673
so part of: LOC114808663
location: complement(239953..241835)
location: region:239953-241835:-1
so has part: feature:239953-241835:-1:exon

XP_028912285.1
type: Protein
SIO_000068: ncbiprotein

position:239953:-1
position: 239953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:241835:-1
position: 241835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239953-241835:-1:exon

LOC114808664
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808664
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(352968..359885)
location: region:352968-359885:-1
so has part: feature:352968-359885:-1:exon
subclass of: SO_0000010

114808664
type: Gene
SIO_000068: ncbigene

position:352968:-1
position: 352968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:359885:-1
position: 359885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:352968-359885:-1:exon

LOC114808664
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808664
product: forkhead box protein F2-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 84% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_029056453.1
SIO_010081: LOC114808664
subclass of: SO_0000673
so part of: LOC114808664
location: complement(join(352968..353893,357578..357866,357969..358883,359766..359885))
location: region:352968-359885:-1
so has part: feature:359766-359885:-1:exon
so has part: feature:357969-358883:-1:exon
so has part: feature:357578-357866:-1:exon
so has part: feature:352968-353893:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:359766-359885:-1:exon

position:359766:-1
position: 359766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:357969-358883:-1:exon

position:357969:-1
position: 357969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:358883:-1
position: 358883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:357578-357866:-1:exon

position:357578:-1
position: 357578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:357866:-1
position: 357866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:352968-353893:-1:exon

position:353893:-1
position: 353893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808664
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808664
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: forkhead box protein F2-like
translation: MGLLVGVRVYFGGYSYGGLAAGAPQHLLTRKPRGQNLRGKPPPPRPPPPPAPPRRPRSPGPGALRSALMNQPPLSSSSSASSSAAALEASSSSSSASSSSSTSSAPSSSSSSSSASSACKGAGGGGGGGGKKATSGLRRPEKPPYSYIALIVMAIQSSPSKRLTLSEIYQFLQARFPFFRGSYQGWKNSVRHNLSLNECFIKLPKGLGRPGKGHYWTIDPASEFMFEEGSFRRRPRGFRRKCQALKPVYHRMVSGLGFGASLLPQPFDFQPAPSAPLGCPAQGGYAGLDVMPGPYDAGGPGHPHHHAPHHHHHHHHHHHHVPHASPNPGSTYVAGCPGPAAAAGGGAGGGGAGGGGGEYGPDSSSSPVPSSPALASAIDCHSPYPSPAAHWSSPGASPYLKQPPALPPGGNPPAPAALHSGMASYSLDQSYLHQNGRDDLSVGLPRYQHHSSPVCDRKDFVLNFNAFHPSASGSYYHHHHHQSVCQDIKPCVM
SIO_010081: LOC114808664
subclass of: SO_0000673
so part of: LOC114808664
location: complement(join(353736..353893,357578..357866,357969..358883,359766..359885))
location: region:353736-359885:-1
so has part: feature:359766-359885:-1:exon
so has part: feature:357969-358883:-1:exon
so has part: feature:357578-357866:-1:exon
so has part: feature:353736-353893:-1:exon

XP_028912286.1
type: Protein
SIO_000068: ncbiprotein

position:353736:-1
position: 353736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:359766-359885:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:357969-358883:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:357578-357866:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:353736-353893:-1:exon

LOC114808665
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808665
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(413183..414997)
location: region:413183-414997:-1
so has part: feature:413183-414997:-1:exon
subclass of: SO_0000010

114808665
type: Gene
SIO_000068: ncbigene

position:413183:-1
position: 413183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:414997:-1
position: 414997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:413183-414997:-1:exon

LOC114808665
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808665
product: forkhead box protein Q1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 74% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_039910963.1
SIO_010081: LOC114808665
subclass of: SO_0000673
so part of: LOC114808665
location: complement(join(413183..413379,413754..414997))
location: region:413183-414997:-1
so has part: feature:413754-414997:-1:exon
so has part: feature:413183-413379:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:413754-414997:-1:exon

position:413754:-1
position: 413754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:413183-413379:-1:exon

position:413379:-1
position: 413379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808665
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: forkhead box protein Q1-like
translation: MKLDVFALRANGDAETGGHLEGAGGAGARAGGGGPLSPVSGPGEDEPGSDGDCAAHGSGGGSGAAVGGDAAAGAGGGRTKPYTRRPKPPYSYIALIAMAIRDSAGGRLTLAEINEYLMAKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLNPNSEYTFADGVFRRRRKRLGHKAAVAAAAAVAAAAAAAEDPAARPPEEEPAAAGTGPALLLPPPPASAPPPAAPSSPSPCPPRCKEEGAGPGAAGKFSSSFAIDSILSKPFRRRGEPSAEPRGHPPAARLLWAAGYPALGPYAVAPRPQPPAALFGGGGGSGLRLRPQRLPALPRRDAPRLSGHRRPDGDGGGTRTDGAAATAGPGAGNIGAPSSALSTYGERDP
SIO_010081: LOC114808665
subclass of: SO_0000673
so part of: LOC114808665
location: complement(join(413183..413379,413754..414729))
location: region:413183-414729:-1
so has part: feature:413754-414729:-1:exon
so has part: feature:413183-413379:-1:exon

XP_039766897.1
type: Protein
SIO_000068: ncbiprotein

position:414729:-1
position: 414729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:413754-414729:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:413183-413379:-1:exon

LOC114808676
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808676
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(584812..594285)
location: region:584812-594285:-1
so has part: feature:584812-594285:-1:exon
subclass of: SO_0000011

114808676
type: Gene
SIO_000068: ncbigene

position:584812:-1
position: 584812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:594285:-1
position: 594285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:584812-594285:-1:exon

LOC114808676
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9258
nc RNA class: lncRNA
gene: LOC114808676
product: uncharacterized LOC114808676
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_003756495.2
SIO_010081: LOC114808676
subclass of: SO_0000673
so part of: LOC114808676
location: complement(join(584812..585747,588047..588318,594121..594285))
location: region:584812-594285:-1
so has part: feature:594121-594285:-1:exon
so has part: feature:588047-588318:-1:exon
so has part: feature:584812-585747:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:594121-594285:-1:exon

position:594121:-1
position: 594121
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:588047-588318:-1:exon

position:588047:-1
position: 588047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:588318:-1
position: 588318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:584812-585747:-1:exon

position:585747:-1
position: 585747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808671
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808671
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 815361..979453
location: region:815361-979453:1
so has part: feature:815361-979453:1:exon
subclass of: SO_0000010

114808671
type: Gene
SIO_000068: ncbigene

position:815361:1
position: 815361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:979453:1
position: 979453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:815361-979453:1:exon

LOC114808671
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808671
product: exocyst complex component 2-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 96% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_039910964.1
SIO_010081: LOC114808671
subclass of: SO_0000673
so part of: LOC114808671
location: join(815361..815478,826282..826408,837912..838025,839493..839617,850693..850773,854095..854240,854332..854413,855276..855378,865191..865309,880533..880658,885580..885704,896558..896623,896913..897070,897333..897478,898989..899050,908481..908561,909581..909640,911701..911728,914177..914213,915901..915967,920877..920993,930013..930154,961919..961974,969096..969218,973218..973279,974722..974781,977786..977923,978241..979453)
location: region:815361-979453:1
so has part: feature:815361-815478:1:exon
so has part: feature:826282-826408:1:exon
so has part: feature:837912-838025:1:exon
so has part: feature:839493-839617:1:exon
so has part: feature:850693-850773:1:exon
so has part: feature:854095-854240:1:exon
so has part: feature:854332-854413:1:exon
so has part: feature:855276-855378:1:exon
so has part: feature:865191-865309:1:exon
so has part: feature:880533-880658:1:exon
so has part: feature:885580-885704:1:exon
so has part: feature:896558-896623:1:exon
so has part: feature:896913-897070:1:exon
so has part: feature:897333-897478:1:exon
so has part: feature:898989-899050:1:exon
so has part: feature:908481-908561:1:exon
so has part: feature:909581-909640:1:exon
so has part: feature:911701-911728:1:exon
so has part: feature:914177-914213:1:exon
so has part: feature:915901-915967:1:exon
so has part: feature:920877-920993:1:exon
so has part: feature:930013-930154:1:exon
so has part: feature:961919-961974:1:exon
so has part: feature:969096-969218:1:exon
so has part: feature:973218-973279:1:exon
so has part: feature:974722-974781:1:exon
so has part: feature:977786-977923:1:exon
so has part: feature:978241-979453:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:815361-815478:1:exon

position:815478:1
position: 815478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:826282-826408:1:exon

position:826282:1
position: 826282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:826408:1
position: 826408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:837912-838025:1:exon

position:837912:1
position: 837912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:838025:1
position: 838025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:839493-839617:1:exon

position:839493:1
position: 839493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:839617:1
position: 839617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:850693-850773:1:exon

position:850693:1
position: 850693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:850773:1
position: 850773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:854095-854240:1:exon

position:854095:1
position: 854095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:854240:1
position: 854240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:854332-854413:1:exon

position:854332:1
position: 854332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:854413:1
position: 854413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:855276-855378:1:exon

position:855276:1
position: 855276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:855378:1
position: 855378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:865191-865309:1:exon

position:865191:1
position: 865191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:865309:1
position: 865309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:880533-880658:1:exon

position:880533:1
position: 880533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:880658:1
position: 880658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:885580-885704:1:exon

position:885580:1
position: 885580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:885704:1
position: 885704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:896558-896623:1:exon

position:896558:1
position: 896558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:896623:1
position: 896623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:896913-897070:1:exon

position:896913:1
position: 896913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:897070:1
position: 897070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:897333-897478:1:exon

position:897333:1
position: 897333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:897478:1
position: 897478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:898989-899050:1:exon

position:898989:1
position: 898989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:899050:1
position: 899050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:908481-908561:1:exon

position:908481:1
position: 908481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:908561:1
position: 908561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:909581-909640:1:exon

position:909581:1
position: 909581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:909640:1
position: 909640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:911701-911728:1:exon

position:911701:1
position: 911701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:911728:1
position: 911728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:914177-914213:1:exon

position:914177:1
position: 914177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:914213:1
position: 914213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:915901-915967:1:exon

position:915901:1
position: 915901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:915967:1
position: 915967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:920877-920993:1:exon

position:920877:1
position: 920877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:920993:1
position: 920993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:930013-930154:1:exon

position:930013:1
position: 930013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:930154:1
position: 930154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:961919-961974:1:exon

position:961919:1
position: 961919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:961974:1
position: 961974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:969096-969218:1:exon

position:969096:1
position: 969096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:969218:1
position: 969218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:973218-973279:1:exon

position:973218:1
position: 973218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:973279:1
position: 973279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:974722-974781:1:exon

position:974722:1
position: 974722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:974781:1
position: 974781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:977786-977923:1:exon

position:977786:1
position: 977786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:977923:1
position: 977923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:978241-979453:1:exon

position:978241:1
position: 978241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114808671
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808671
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: exocyst complex component 2-like
translation: MSQSRQRPLVTGISPNEGISWTKVTIRGENLGTGPTDLIGILDQSAVWMDEMNYYDMRTDRNKGIPPLSLRPANPLGIEIEKGKFPQKDLETLFRGMSADFTSENFSAAWYLIENHSTTSFDQLKMAVNNLKKQANKKNEGSLAYVKGGLSTFFEPQDALSAIHQKLEADGTEKVEGSMTQKLENVLNRASNTADTLFQEVLGRKDKADSIRNALNVLQRFKFLFNLPLNIERNIQKGDYDVVINDYEKAKSLFGKTEVQVFKKYYAEVETRIEVLRELLLDKLLETPSILHDQKHYIRYLSDLHADGDPAWQCIGAQHKWIIHLMHNCKEGYVKELKGNPVLHSTLLDMDGDSRPSPLSHLSQTASLKRGSSFQSSRDDIWRYKVPHQVAFVEKLTKLVLSQLPNFWKLLISYVNGSLFSETAEKSGHMERSKNVRQRQNDFKKMIQEVMYSLVKLIRGALLPFSLREGELRQFEGWEMKSELSGQWLTHVIHTVRLTSESLTALEIPNDLLQTIQDLILDLRVHCVMITLQHTAEDKMRKIGNSIKRLAEKEDWIIDNEGLTSLPSQFEQCIVHSLQSIKGVVECKSGETSVFQEPKTQEEVCQLSINIMQVFIHCLEQLKSTKPDGDVDTTHLSVDVSSPDLFGSIHEDFSLSSEQQLLIVLSNCRYLERHTFLNIAEHFEKHNFQGIEKITQVSMALLKELDERLFENYIGLKADPIVGLLEPGIYAGYFDWKNCLTPTGVRNYLKEALVNIIAVHAEVFTISKELVPRVLSKIVEAVFEELSRLMQCVSSFSKNGALQAKLEICALRDAMAVYLTPESRSSFKQALEALPQLSSVTDKTLLEELLNKFKSSMHLQLTCFQASPSTMVKT
SIO_010081: LOC114808671
subclass of: SO_0000673
so part of: LOC114808671
location: join(815361..815478,826282..826408,837912..838025,839493..839617,850693..850773,854095..854240,854332..854413,855276..855378,865191..865309,880533..880658,885580..885704,896558..896623,896913..897070,897333..897478,898989..899050,908481..908561,909581..909640,911701..911728,914177..914213,915901..915967,920877..920993,930013..930154,961919..961974,969096..969218,973218..973279,974722..974781,977786..977879)
location: region:815361-977879:1
so has part: feature:815361-815478:1:exon
so has part: feature:826282-826408:1:exon
so has part: feature:837912-838025:1:exon
so has part: feature:839493-839617:1:exon
so has part: feature:850693-850773:1:exon
so has part: feature:854095-854240:1:exon
so has part: feature:854332-854413:1:exon
so has part: feature:855276-855378:1:exon
so has part: feature:865191-865309:1:exon
so has part: feature:880533-880658:1:exon
so has part: feature:885580-885704:1:exon
so has part: feature:896558-896623:1:exon
so has part: feature:896913-897070:1:exon
so has part: feature:897333-897478:1:exon
so has part: feature:898989-899050:1:exon
so has part: feature:908481-908561:1:exon
so has part: feature:909581-909640:1:exon
so has part: feature:911701-911728:1:exon
so has part: feature:914177-914213:1:exon
so has part: feature:915901-915967:1:exon
so has part: feature:920877-920993:1:exon
so has part: feature:930013-930154:1:exon
so has part: feature:961919-961974:1:exon
so has part: feature:969096-969218:1:exon
so has part: feature:973218-973279:1:exon
so has part: feature:974722-974781:1:exon
so has part: feature:977786-977879:1:exon

XP_039766898.1
type: Protein
SIO_000068: ncbiprotein

position:977879:1
position: 977879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:815361-815478:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:826282-826408:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:837912-838025:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:839493-839617:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:850693-850773:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:854095-854240:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:854332-854413:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:855276-855378:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:865191-865309:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:880533-880658:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:885580-885704:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:896558-896623:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:896913-897070:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:897333-897478:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:898989-899050:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:908481-908561:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:909581-909640:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:911701-911728:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:914177-914213:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:915901-915967:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:920877-920993:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:930013-930154:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:961919-961974:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:969096-969218:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:973218-973279:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:974722-974781:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:977786-977879:1:exon

LOC120638181
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC120638181
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(868050..868772)
location: region:868050-868772:-1
so has part: feature:868050-868772:-1:exon
subclass of: SO_0000011

120638181
type: Gene
SIO_000068: ncbigene

position:868050:-1
position: 868050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:868772:-1
position: 868772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:868050-868772:-1:exon

LOC120638181
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9258
nc RNA class: lncRNA
gene: LOC120638181
product: uncharacterized LOC120638181
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_005659695.1
SIO_010081: LOC120638181
subclass of: SO_0000673
so part of: LOC120638181
location: complement(join(868050..868312,868600..868772))
location: region:868050-868772:-1
so has part: feature:868600-868772:-1:exon
so has part: feature:868050-868312:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:868600-868772:-1:exon

position:868600:-1
position: 868600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:868050-868312:-1:exon

position:868312:-1
position: 868312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808678
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808678
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 1016327..1016463
location: region:1016327-1016463:1
so has part: feature:1016327-1016463:1:exon
subclass of: SO_0000578

114808678
type: Gene
SIO_000068: ncbigene

position:1016327:1
position: 1016327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1016463:1
position: 1016463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1016327-1016463:1:exon

LOC114808678
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9258
nc RNA class: snoRNA
gene: LOC114808678
product: small nucleolar RNA SNORA7
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00409
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003756497.1
SIO_010081: LOC114808678
subclass of: SO_0000673
so part of: LOC114808678
location: 1016327..1016463
location: region:1016327-1016463:1
so has part: feature:1016327-1016463:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1016327-1016463:1:exon

LOC114808669
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808669
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1037250..1058184)
location: region:1037250-1058184:-1
so has part: feature:1037250-1058184:-1:exon
subclass of: SO_0000010

114808669
type: Gene
SIO_000068: ncbigene

position:1037250:-1
position: 1037250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1058184:-1
position: 1058184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1037250-1058184:-1:exon

LOC114808669
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808669
product: interferon regulatory factor 4-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_029056458.2
SIO_010081: LOC114808669
subclass of: SO_0000673
so part of: LOC114808669
location: complement(join(1037250..1039663,1042124..1042236,1046607..1046960,1049945..1050052,1054011..1054152,1054916..1055004,1055806..1055992,1056982..1057224,1058136..1058184))
location: region:1037250-1058184:-1
so has part: feature:1058136-1058184:-1:exon
so has part: feature:1056982-1057224:-1:exon
so has part: feature:1055806-1055992:-1:exon
so has part: feature:1054916-1055004:-1:exon
so has part: feature:1054011-1054152:-1:exon
so has part: feature:1049945-1050052:-1:exon
so has part: feature:1046607-1046960:-1:exon
so has part: feature:1042124-1042236:-1:exon
so has part: feature:1037250-1039663:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1058136-1058184:-1:exon

position:1058136:-1
position: 1058136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1056982-1057224:-1:exon

position:1056982:-1
position: 1056982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1057224:-1
position: 1057224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1055806-1055992:-1:exon

position:1055806:-1
position: 1055806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1055992:-1
position: 1055992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1054916-1055004:-1:exon

position:1054916:-1
position: 1054916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1055004:-1
position: 1055004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1054011-1054152:-1:exon

position:1054011:-1
position: 1054011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1054152:-1
position: 1054152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1049945-1050052:-1:exon

position:1049945:-1
position: 1049945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1050052:-1
position: 1050052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1046607-1046960:-1:exon

position:1046607:-1
position: 1046607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1046960:-1
position: 1046960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1042124-1042236:-1:exon

position:1042124:-1
position: 1042124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1042236:-1
position: 1042236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1037250-1039663:-1:exon

position:1039663:-1
position: 1039663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808669
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808669
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: interferon regulatory factor 4-like
translation: MNLEGGGGGGGGGECGMSSVSCGNGKLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFREGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPEGAKKGAKQLSMEDQQIIMSHPYTMTSPYTSLQPQVPNYMMPHDRNWRDFVPEQPHPDIPYQCPSVPYTARSHHWQGSACENGCQVTGTFYACAPPESQAPGIPIEPSIRSAEALALSDCRLHICLYYREILVKELTTSSPEGCRISHGQSYEASNMDQVLFPYPEDNAQRKNIEKLLSHLERGVLLWMAPDGLYAKRLCQSRIYWDGPLALCSDRPNKLEREQTCKLFDTQQFLSELQVFAHHGRPLPRFQIALCFGEEFPDPQRQRKLITANVEPLLARQLYYFAQQNSGPFLRGYDLPEIISSQEDYHRSIRHSSIQE
SIO_010081: LOC114808669
subclass of: SO_0000673
so part of: LOC114808669
location: complement(join(1039520..1039663,1042124..1042236,1046607..1046960,1049945..1050052,1054011..1054152,1054916..1055004,1055806..1055992,1056982..1057206))
location: region:1039520-1057206:-1
so has part: feature:1056982-1057206:-1:exon
so has part: feature:1055806-1055992:-1:exon
so has part: feature:1054916-1055004:-1:exon
so has part: feature:1054011-1054152:-1:exon
so has part: feature:1049945-1050052:-1:exon
so has part: feature:1046607-1046960:-1:exon
so has part: feature:1042124-1042236:-1:exon
so has part: feature:1039520-1039663:-1:exon

XP_028912291.1
type: Protein
SIO_000068: ncbiprotein

position:1039520:-1
position: 1039520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1057206:-1
position: 1057206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1056982-1057206:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1055806-1055992:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1054916-1055004:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1054011-1054152:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1049945-1050052:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1046607-1046960:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1042124-1042236:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1039520-1039663:-1:exon

LOC103170548
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC103170548
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1104393..1179674)
location: region:1104393-1179674:-1
so has part: feature:1104393-1179674:-1:exon
subclass of: SO_0000010

103170548
type: Gene
SIO_000068: ncbigene

position:1104393:-1
position: 1104393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1179674:-1
position: 1179674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1104393-1179674:-1:exon

LOC103170548
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC103170548
product: dual specificity protein phosphatase 22, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_029056477.1
SIO_010081: LOC103170548
subclass of: SO_0000673
so part of: LOC103170548
location: complement(join(1104393..1105018,1109831..1109903,1110895..1111066,1113330..1113404,1126958..1127007,1157527..1157609,1168481..1168514,1179453..1179674))
location: region:1104393-1179674:-1
so has part: feature:1179453-1179674:-1:exon
so has part: feature:1168481-1168514:-1:exon
so has part: feature:1157527-1157609:-1:exon
so has part: feature:1126958-1127007:-1:exon
so has part: feature:1113330-1113404:-1:exon
so has part: feature:1110895-1111066:-1:exon
so has part: feature:1109831-1109903:-1:exon
so has part: feature:1104393-1105018:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1179453-1179674:-1:exon

position:1179453:-1
position: 1179453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1168481-1168514:-1:exon

position:1168481:-1
position: 1168481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1168514:-1
position: 1168514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1157527-1157609:-1:exon

position:1157527:-1
position: 1157527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1157609:-1
position: 1157609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1126958-1127007:-1:exon

position:1126958:-1
position: 1126958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1127007:-1
position: 1127007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1113330-1113404:-1:exon

position:1113330:-1
position: 1113330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1113404:-1
position: 1113404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1110895-1111066:-1:exon

position:1110895:-1
position: 1110895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1111066:-1
position: 1111066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1109831-1109903:-1:exon

position:1109831:-1
position: 1109831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1109903:-1
position: 1109903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1104393-1105018:-1:exon

position:1105018:-1
position: 1105018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC103170548
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC103170548
product: dual specificity protein phosphatase 22, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_029056475.1
SIO_010081: LOC103170548
subclass of: SO_0000673
so part of: LOC103170548
location: complement(join(1104933..1105504,1109831..1109903,1110895..1111066,1113330..1113404,1126958..1127007,1157527..1157609,1168481..1168514,1179453..1179674))
location: region:1104933-1179674:-1
so has part: feature:1179453-1179674:-1:exon
so has part: feature:1168481-1168514:-1:exon
so has part: feature:1157527-1157609:-1:exon
so has part: feature:1126958-1127007:-1:exon
so has part: feature:1113330-1113404:-1:exon
so has part: feature:1110895-1111066:-1:exon
so has part: feature:1109831-1109903:-1:exon
so has part: feature:1104933-1105504:-1:exon

position:1104933:-1
position: 1104933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1179453-1179674:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1168481-1168514:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1157527-1157609:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1126958-1127007:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1113330-1113404:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1110895-1111066:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1109831-1109903:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1104933-1105504:-1:exon

position:1105504:-1
position: 1105504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC103170548
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC103170548
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dual specificity protein phosphatase 22 isoform X3
translation: MGNGMNKILPGLYIGNFKDARDAEQLNKNKVTHILSIHDSARPMLEGVKYLCIPAADSPSQDLTRHFKESIRFIHECRLRGESCLVHCLAGVSRSVTLVVAYVMTVTDFGWEDALHTVRAGRSCANPNMGFQKQLQEFEKNEVQQFRQWLKEEYGESPLRDAEQAKSILAKPGCLKYLTLLRRL
SIO_010081: LOC103170548
subclass of: SO_0000673
so part of: LOC103170548
location: complement(join(1104972..1105018,1109831..1109903,1110895..1111066,1113330..1113404,1126958..1127007,1157527..1157609,1168481..1168514,1179453..1179473))
location: region:1104972-1179473:-1
so has part: feature:1179453-1179473:-1:exon
so has part: feature:1168481-1168514:-1:exon
so has part: feature:1157527-1157609:-1:exon
so has part: feature:1126958-1127007:-1:exon
so has part: feature:1113330-1113404:-1:exon
so has part: feature:1110895-1111066:-1:exon
so has part: feature:1109831-1109903:-1:exon
so has part: feature:1104972-1105018:-1:exon

XP_028912310.1
type: Protein
SIO_000068: ncbiprotein

position:1104972:-1
position: 1104972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1179473:-1
position: 1179473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1179453-1179473:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1168481-1168514:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1157527-1157609:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1126958-1127007:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1113330-1113404:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1110895-1111066:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1109831-1109903:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1104972-1105018:-1:exon

LOC103170548
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC103170548
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dual specificity protein phosphatase 22 isoform X2
translation: MGNGMNKILPGLYIGNFKDARDAEQLNKNKVTHILSIHDSARPMLEGVKYLCIPAADSPSQDLTRHFKESIRFIHECRLRGESCLVHCLAGVSRSVTLVVAYVMTVTDFGWEDALHTVRAGRSCANPNMGFQKQLQEFEKNEVQQFRQWLKEEYGESPLRDAEQAKSILAHRTTRMKRGVCPTPIKVLQPSSSEFHPKMIPE
SIO_010081: LOC103170548
subclass of: SO_0000673
so part of: LOC103170548
location: complement(join(1105404..1105504,1109831..1109903,1110895..1111066,1113330..1113404,1126958..1127007,1157527..1157609,1168481..1168514,1179453..1179473))
location: region:1105404-1179473:-1
so has part: feature:1179453-1179473:-1:exon
so has part: feature:1168481-1168514:-1:exon
so has part: feature:1157527-1157609:-1:exon
so has part: feature:1126958-1127007:-1:exon
so has part: feature:1113330-1113404:-1:exon
so has part: feature:1110895-1111066:-1:exon
so has part: feature:1109831-1109903:-1:exon
so has part: feature:1105404-1105504:-1:exon

XP_028912308.1
type: Protein
SIO_000068: ncbiprotein

position:1105404:-1
position: 1105404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1179453-1179473:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1168481-1168514:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1157527-1157609:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1126958-1127007:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1113330-1113404:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1110895-1111066:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1109831-1109903:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1105404-1105504:-1:exon

LOC103170548
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC103170548
product: dual specificity protein phosphatase 22, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XM_029056474.2
SIO_010081: LOC103170548
subclass of: SO_0000673
so part of: LOC103170548
location: complement(join(1109452..1109903,1110895..1111066,1113330..1113404,1126958..1127007,1157527..1157609,1168481..1168514,1179453..1179674))
location: region:1109452-1179674:-1
so has part: feature:1179453-1179674:-1:exon
so has part: feature:1168481-1168514:-1:exon
so has part: feature:1157527-1157609:-1:exon
so has part: feature:1126958-1127007:-1:exon
so has part: feature:1113330-1113404:-1:exon
so has part: feature:1110895-1111066:-1:exon
so has part: feature:1109452-1109903:-1:exon

position:1109452:-1
position: 1109452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1179453-1179674:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1168481-1168514:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1157527-1157609:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1126958-1127007:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1113330-1113404:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1110895-1111066:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1109452-1109903:-1:exon

LOC103170548
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC103170548
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dual specificity protein phosphatase 22 isoform X1
translation: MGNGMNKILPGLYIGNFKDARDAEQLNKNKVTHILSIHDSARPMLEGVKYLCIPAADSPSQDLTRHFKESIRFIHECRLRGESCLVHCLAGVSRSVTLVVAYVMTVTDFGWEDALHTVRAGRSCANPNMGFQKQLQEFEKNEVQQFRQWLKEEYGESPLRDAEQAKSILGKYREQAHAESQQNASGRRWSSFSTLSSLAYSNYTTET
SIO_010081: LOC103170548
subclass of: SO_0000673
so part of: LOC103170548
location: complement(join(1109715..1109903,1110895..1111066,1113330..1113404,1126958..1127007,1157527..1157609,1168481..1168514,1179453..1179473))
location: region:1109715-1179473:-1
so has part: feature:1179453-1179473:-1:exon
so has part: feature:1168481-1168514:-1:exon
so has part: feature:1157527-1157609:-1:exon
so has part: feature:1126958-1127007:-1:exon
so has part: feature:1113330-1113404:-1:exon
so has part: feature:1110895-1111066:-1:exon
so has part: feature:1109715-1109903:-1:exon

XP_028912307.1
type: Protein
SIO_000068: ncbiprotein

position:1109715:-1
position: 1109715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1179453-1179473:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1168481-1168514:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1157527-1157609:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1126958-1127007:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1113330-1113404:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1110895-1111066:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1109715-1109903:-1:exon

LOC114808674
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808674
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 1247626..1257387
location: region:1247626-1257387:1
so has part: feature:1247626-1257387:1:exon

114808674
type: Gene
SIO_000068: ncbigene

position:1247626:1
position: 1247626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1257387:1
position: 1257387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1247626-1257387:1:exon

LOC114808674
type: Exon
subclass of: SO_0000147
RO_0002162: 9258
gene: LOC114808674
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 81% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC114808674
subclass of: SO_0000673
so part of: LOC114808674
location: 1247626..1247691
location: region:1247626-1247691:1
so has part: feature:1247626-1247691:1:exon

position:1247691:1
position: 1247691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1247626-1247691:1:exon

LOC114808674
type: Exon
subclass of: SO_0000147
RO_0002162: 9258
gene: LOC114808674
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 81% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC114808674
subclass of: SO_0000673
so part of: LOC114808674
location: 1248872..1249095
location: region:1248872-1249095:1
so has part: feature:1248872-1249095:1:exon

position:1248872:1
position: 1248872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1249095:1
position: 1249095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1248872-1249095:1:exon

LOC114808674
type: Exon
subclass of: SO_0000147
RO_0002162: 9258
gene: LOC114808674
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 81% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC114808674
subclass of: SO_0000673
so part of: LOC114808674
location: 1250554..1250748
location: region:1250554-1250748:1
so has part: feature:1250554-1250748:1:exon

position:1250554:1
position: 1250554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1250748:1
position: 1250748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1250554-1250748:1:exon

LOC114808674
type: Exon
subclass of: SO_0000147
RO_0002162: 9258
gene: LOC114808674
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 81% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC114808674
subclass of: SO_0000673
so part of: LOC114808674
location: 1255265..1255366
location: region:1255265-1255366:1
so has part: feature:1255265-1255366:1:exon

position:1255265:1
position: 1255265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1255366:1
position: 1255366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1255265-1255366:1:exon

LOC114808674
type: Exon
subclass of: SO_0000147
RO_0002162: 9258
gene: LOC114808674
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 81% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC114808674
subclass of: SO_0000673
so part of: LOC114808674
location: 1257124..1257387
location: region:1257124-1257387:1
so has part: feature:1257124-1257387:1:exon

position:1257124:1
position: 1257124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1257124-1257387:1:exon

LOC114808659
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808659
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1268506..1272170)
location: region:1268506-1272170:-1
so has part: feature:1268506-1272170:-1:exon
subclass of: SO_0000011

114808659
type: Gene
SIO_000068: ncbigene

position:1268506:-1
position: 1268506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1272170:-1
position: 1272170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1268506-1272170:-1:exon

LOC114808659
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9258
nc RNA class: lncRNA
gene: LOC114808659
product: uncharacterized LOC114808659
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_003756491.1
SIO_010081: LOC114808659
subclass of: SO_0000673
so part of: LOC114808659
location: complement(join(1268506..1268790,1269586..1270134,1270331..1271287,1272055..1272170))
location: region:1268506-1272170:-1
so has part: feature:1272055-1272170:-1:exon
so has part: feature:1270331-1271287:-1:exon
so has part: feature:1269586-1270134:-1:exon
so has part: feature:1268506-1268790:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1272055-1272170:-1:exon

position:1272055:-1
position: 1272055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1270331-1271287:-1:exon

position:1270331:-1
position: 1270331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1271287:-1
position: 1271287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1269586-1270134:-1:exon

position:1269586:-1
position: 1269586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1270134:-1
position: 1270134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1268506-1268790:-1:exon

position:1268790:-1
position: 1268790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114805391
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114805391
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1274402..1299754
location: region:1274402-1299754:1
so has part: feature:1274402-1299754:1:exon
subclass of: SO_0000010

114805391
type: Gene
SIO_000068: ncbigene

position:1274402:1
position: 1274402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1299754:1
position: 1299754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1274402-1299754:1:exon

LOC114805391
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114805391
product: receptor-interacting serine/threonine-protein kinase 1-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_029056472.2
SIO_010081: LOC114805391
subclass of: SO_0000673
so part of: LOC114805391
location: join(1274402..1274575,1279358..1279571,1281601..1281754,1283121..1283258,1284924..1285152,1287396..1287545,1289362..1289438,1291101..1291191,1292945..1293538,1297322..1297465,1298110..1299754)
location: region:1274402-1299754:1
so has part: feature:1274402-1274575:1:exon
so has part: feature:1279358-1279571:1:exon
so has part: feature:1281601-1281754:1:exon
so has part: feature:1283121-1283258:1:exon
so has part: feature:1284924-1285152:1:exon
so has part: feature:1287396-1287545:1:exon
so has part: feature:1289362-1289438:1:exon
so has part: feature:1291101-1291191:1:exon
so has part: feature:1292945-1293538:1:exon
so has part: feature:1297322-1297465:1:exon
so has part: feature:1298110-1299754:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1274402-1274575:1:exon

position:1274575:1
position: 1274575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1279358-1279571:1:exon

position:1279358:1
position: 1279358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1279571:1
position: 1279571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1281601-1281754:1:exon

position:1281601:1
position: 1281601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1281754:1
position: 1281754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1283121-1283258:1:exon

position:1283121:1
position: 1283121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1283258:1
position: 1283258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1284924-1285152:1:exon

position:1284924:1
position: 1284924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1285152:1
position: 1285152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1287396-1287545:1:exon

position:1287396:1
position: 1287396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1287545:1
position: 1287545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1289362-1289438:1:exon

position:1289362:1
position: 1289362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1289438:1
position: 1289438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1291101-1291191:1:exon

position:1291101:1
position: 1291101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1291191:1
position: 1291191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1292945-1293538:1:exon

position:1292945:1
position: 1292945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1293538:1
position: 1293538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1297322-1297465:1:exon

position:1297322:1
position: 1297322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1297465:1
position: 1297465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1298110-1299754:1:exon

position:1298110:1
position: 1298110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114805391
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114805391
product: receptor-interacting serine/threonine-protein kinase 1-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_039910965.1
SIO_010081: LOC114805391
subclass of: SO_0000673
so part of: LOC114805391
location: join(1274402..1274575,1279358..1279571,1281601..1281754,1283121..1283258,1284924..1285152,1287396..1287545,1289362..1289438,1291101..1291191,1292945..1293538,1297325..1297465,1298110..1299754)
location: region:1274402-1299754:1
so has part: feature:1274402-1274575:1:exon
so has part: feature:1279358-1279571:1:exon
so has part: feature:1281601-1281754:1:exon
so has part: feature:1283121-1283258:1:exon
so has part: feature:1284924-1285152:1:exon
so has part: feature:1287396-1287545:1:exon
so has part: feature:1289362-1289438:1:exon
so has part: feature:1291101-1291191:1:exon
so has part: feature:1292945-1293538:1:exon
so has part: feature:1297325-1297465:1:exon
so has part: feature:1298110-1299754:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1274402-1274575:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1279358-1279571:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1281601-1281754:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1283121-1283258:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1284924-1285152:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1287396-1287545:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1289362-1289438:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1291101-1291191:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1292945-1293538:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1297325-1297465:1:exon

position:1297325:1
position: 1297325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1298110-1299754:1:exon

LOC114805391
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114805391
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: receptor-interacting serine/threonine-protein kinase 1-like isoform X1
translation: MSLAKMQISSDDLLEKEQLDSGGFGLVSLCFHRSHGLVVLKNVYTGPQRTEFNASLLEEGKIMHKLNHSRVVKLLGFILEDGNYSLVMEYMPKGNLMKVLKTTSIPLSVKGRTILEITEGMNYLHGEGVIHKDLKPENILVDDDFHIKIADLGVAAFKTWSKLTKEENNRQRKMKSAPEAAAGTLFYMAPEHLSSVNTKPTEKSDVYSFAIVLWAIFANKEPYEHAICEQQIYWGIIHGNRPNVEDIRVSCPKEIIDLMEHCWKDHPEDRPTFEGIHQGFSPFYQKHFEINVETDVINLKKKYPAPNEIVQRMHSLQIDSTPYRASSTPPDQPNSLHSSQDLGTCYVDDAMFSPYPGNQPVENEAPLEEPSLQQKLQEEANYHLFGERLDKQQSFQNKYSAAQDIEEERKRRVSHDPFAKAPGPSQTLQPARARAAAYHGPAGSSVGSQQSAAAGAAPSLPRRGSEPASHSVSLRTRPTEVPAASMEYGYEPNPGPLFGLHKIPVPETNFDPLANMPTSSYPKSLASIEDLGRISITRSSAIQIGNCNYMMIDDKSLQPVSTYLNSQTQPELWAIFENPSSLLDEHLHPVRENLAKQWKNCARQLGFTEAQIDEIDHDYERDGLKEKVYQMLQKWLMREGNKGATVGKLAKALYECKRIDLLNGLIRMVQSQPK
SIO_010081: LOC114805391
subclass of: SO_0000673
so part of: LOC114805391
location: join(1279420..1279571,1281601..1281754,1283121..1283258,1284924..1285152,1287396..1287545,1289362..1289438,1291101..1291191,1292945..1293538,1297322..1297465,1298110..1298405)
location: region:1279420-1298405:1
so has part: feature:1279420-1279571:1:exon
so has part: feature:1281601-1281754:1:exon
so has part: feature:1283121-1283258:1:exon
so has part: feature:1284924-1285152:1:exon
so has part: feature:1287396-1287545:1:exon
so has part: feature:1289362-1289438:1:exon
so has part: feature:1291101-1291191:1:exon
so has part: feature:1292945-1293538:1:exon
so has part: feature:1297322-1297465:1:exon
so has part: feature:1298110-1298405:1:exon

XP_028912305.1
type: Protein
SIO_000068: ncbiprotein

position:1279420:1
position: 1279420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1298405:1
position: 1298405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1279420-1279571:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1281601-1281754:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1283121-1283258:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1284924-1285152:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1287396-1287545:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1289362-1289438:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1291101-1291191:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1292945-1293538:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1297322-1297465:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1298110-1298405:1:exon

LOC114805391
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114805391
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: receptor-interacting serine/threonine-protein kinase 1-like isoform X2
translation: MSLAKMQISSDDLLEKEQLDSGGFGLVSLCFHRSHGLVVLKNVYTGPQRTEFNASLLEEGKIMHKLNHSRVVKLLGFILEDGNYSLVMEYMPKGNLMKVLKTTSIPLSVKGRTILEITEGMNYLHGEGVIHKDLKPENILVDDDFHIKIADLGVAAFKTWSKLTKEENNRQRKMKSAPEAAAGTLFYMAPEHLSSVNTKPTEKSDVYSFAIVLWAIFANKEPYEHAICEQQIYWGIIHGNRPNVEDIRVSCPKEIIDLMEHCWKDHPEDRPTFEGIHQGFSPFYQKHFEINVETDVINLKKKYPAPNEIVQRMHSLQIDSTPYRASSTPPDQPNSLHSSQDLGTCYVDDAMFSPYPGNQPVENEAPLEEPSLQQKLQEEANYHLFGERLDKQQSFQNKYSAAQDIEEERKRRVSHDPFAKAPGPSQTLQPARARAAAYHGPAGSSVGSQQSAAAGAAPSLPRRGSEPASHSVSLRTRPTEVPAASMEYGYEPNPGPLFGLHKIPVPETNFDPLANMPTSSYPKSLASIDLGRISITRSSAIQIGNCNYMMIDDKSLQPVSTYLNSQTQPELWAIFENPSSLLDEHLHPVRENLAKQWKNCARQLGFTEAQIDEIDHDYERDGLKEKVYQMLQKWLMREGNKGATVGKLAKALYECKRIDLLNGLIRMVQSQPK
SIO_010081: LOC114805391
subclass of: SO_0000673
so part of: LOC114805391
location: join(1279420..1279571,1281601..1281754,1283121..1283258,1284924..1285152,1287396..1287545,1289362..1289438,1291101..1291191,1292945..1293538,1297325..1297465,1298110..1298405)
location: region:1279420-1298405:1
so has part: feature:1279420-1279571:1:exon
so has part: feature:1281601-1281754:1:exon
so has part: feature:1283121-1283258:1:exon
so has part: feature:1284924-1285152:1:exon
so has part: feature:1287396-1287545:1:exon
so has part: feature:1289362-1289438:1:exon
so has part: feature:1291101-1291191:1:exon
so has part: feature:1292945-1293538:1:exon
so has part: feature:1297325-1297465:1:exon
so has part: feature:1298110-1298405:1:exon

XP_039766899.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1279420-1279571:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1281601-1281754:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1283121-1283258:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1284924-1285152:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1287396-1287545:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1289362-1289438:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1291101-1291191:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1292945-1293538:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1297325-1297465:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1298110-1298405:1:exon

LOC100079776
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC100079776
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1303266..1332102
location: region:1303266-1332102:1
so has part: feature:1303266-1332102:1:exon
subclass of: SO_0000010

100079776
type: Gene
SIO_000068: ncbigene

position:1303266:1
position: 1303266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1332102:1
position: 1332102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1303266-1332102:1:exon

LOC100079776
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC100079776
product: valacyclovir hydrolase
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_029056459.1
SIO_010081: LOC100079776
subclass of: SO_0000673
so part of: LOC100079776
location: join(1303266..1303513,1313508..1313611,1315161..1315327,1321619..1321778,1324279..1324410,1327758..1327881,1331663..1332102)
location: region:1303266-1332102:1
so has part: feature:1303266-1303513:1:exon
so has part: feature:1313508-1313611:1:exon
so has part: feature:1315161-1315327:1:exon
so has part: feature:1321619-1321778:1:exon
so has part: feature:1324279-1324410:1:exon
so has part: feature:1327758-1327881:1:exon
so has part: feature:1331663-1332102:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1303266-1303513:1:exon

position:1303513:1
position: 1303513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1313508-1313611:1:exon

position:1313508:1
position: 1313508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1313611:1
position: 1313611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1315161-1315327:1:exon

position:1315161:1
position: 1315161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1315327:1
position: 1315327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1321619-1321778:1:exon

position:1321619:1
position: 1321619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1321778:1
position: 1321778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1324279-1324410:1:exon

position:1324279:1
position: 1324279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1324410:1
position: 1324410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1327758-1327881:1:exon

position:1327758:1
position: 1327758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1327881:1
position: 1327881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1331663-1332102:1:exon

position:1331663:1
position: 1331663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100079776
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC100079776
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:1315292..1315294,aa:OTHER)
product: LOW QUALITY PROTEIN: valacyclovir hydrolase
translation: MALGRPGPGSVPLLLRRRRLFLLLPWLKRSPEPRAALAAAYGTSITSSKVEVNGVHLHYRPTGEGEHAVLLLPGMLGSGESDFGPQLKNLNKQRFTVVAWDPRGYGHSIPPQRGYPANFFXRDAKDAVDLMKMLNFKKVSLLGWSDGGITALIAAARYLIFTYIHKMVIWEANAYVTDEDERIYHGIRDVSNWSERIRKPLEALYGRKYLAQTCEGWVDGILQFRDQPDGNICRHLQHLIKRPTLILHGEKDPLVPRFHADFIHKHVKGSRLHLMPEAKHNLHLRFPDEFNKLAEDFLQ
SIO_010081: LOC100079776
subclass of: SO_0000673
so part of: LOC100079776
location: join(1303389..1303513,1313508..1313611,1315161..1315327,1321619..1321778,1324279..1324410,1327758..1327881,1331663..1331750)
location: region:1303389-1331750:1
so has part: feature:1303389-1303513:1:exon
so has part: feature:1313508-1313611:1:exon
so has part: feature:1315161-1315327:1:exon
so has part: feature:1321619-1321778:1:exon
so has part: feature:1324279-1324410:1:exon
so has part: feature:1327758-1327881:1:exon
so has part: feature:1331663-1331750:1:exon

XP_028912292.1
type: Protein
SIO_000068: ncbiprotein

position:1303389:1
position: 1303389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1331750:1
position: 1331750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1303389-1303513:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1313508-1313611:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1315161-1315327:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1321619-1321778:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1324279-1324410:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1327758-1327881:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1331663-1331750:1:exon

LOC100079040
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC100079040
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1332528..1335916)
location: region:1332528-1335916:-1
so has part: feature:1332528-1335916:-1:exon
subclass of: SO_0000010

100079040
type: Gene
SIO_000068: ncbigene

position:1332528:-1
position: 1332528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1335916:-1
position: 1335916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1332528-1335916:-1:exon

LOC100079040
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC100079040
product: tubulin beta-2A chain, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 519 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
transcript id: XM_001507875.5
SIO_010081: LOC100079040
subclass of: SO_0000673
so part of: LOC100079040
location: complement(join(1332528..1333788,1333987..1334097,1334444..1334552,1335774..1335916))
location: region:1332528-1335916:-1
so has part: feature:1335774-1335916:-1:exon
so has part: feature:1334444-1334552:-1:exon
so has part: feature:1333987-1334097:-1:exon
so has part: feature:1332528-1333788:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1335774-1335916:-1:exon

position:1335774:-1
position: 1335774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1334444-1334552:-1:exon

position:1334444:-1
position: 1334444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1334552:-1
position: 1334552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1333987-1334097:-1:exon

position:1333987:-1
position: 1333987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1334097:-1
position: 1334097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1332528-1333788:-1:exon

position:1333788:-1
position: 1333788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100079040
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC100079040
product: tubulin beta-2A chain, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 67 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_007669080.4
SIO_010081: LOC100079040
subclass of: SO_0000673
so part of: LOC100079040
location: complement(join(1332528..1333788,1333987..1334097,1334444..1334552,1335280..1335301))
location: region:1332528-1335301:-1
so has part: feature:1335280-1335301:-1:exon
so has part: feature:1334444-1334552:-1:exon
so has part: feature:1333987-1334097:-1:exon
so has part: feature:1332528-1333788:-1:exon

position:1335301:-1
position: 1335301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1335280-1335301:-1:exon

position:1335280:-1
position: 1335280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1334444-1334552:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1333987-1334097:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1332528-1333788:-1:exon

LOC100079040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC100079040
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tubulin beta-2A chain isoform X1
translation: MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEEGEDEA
SIO_010081: LOC100079040
subclass of: SO_0000673
so part of: LOC100079040
location: complement(join(1332728..1333788,1333987..1334097,1334444..1334552,1335774..1335830))
location: region:1332728-1335830:-1
so has part: feature:1335774-1335830:-1:exon
so has part: feature:1334444-1334552:-1:exon
so has part: feature:1333987-1334097:-1:exon
so has part: feature:1332728-1333788:-1:exon

XP_001507925.1
type: Protein
SIO_000068: ncbiprotein

position:1332728:-1
position: 1332728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1335830:-1
position: 1335830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1335774-1335830:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1334444-1334552:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1333987-1334097:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1332728-1333788:-1:exon

LOC100079040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC100079040
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tubulin beta-2A chain isoform X2
translation: MDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEEGEDEA
SIO_010081: LOC100079040
subclass of: SO_0000673
so part of: LOC100079040
location: complement(join(1332728..1333788,1333987..1334047))
location: region:1332728-1334047:-1
so has part: feature:1333987-1334047:-1:exon
so has part: feature:1332728-1333788:-1:exon

XP_007667270.1
type: Protein
SIO_000068: ncbiprotein

position:1334047:-1
position: 1334047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1333987-1334047:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1332728-1333788:-1:exon

LOC100079562
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC100079562
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1365630..1369076)
location: region:1365630-1369076:-1
so has part: feature:1365630-1369076:-1:exon
subclass of: SO_0000010

100079562
type: Gene
SIO_000068: ncbigene

position:1365630:-1
position: 1365630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1369076:-1
position: 1369076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1365630-1369076:-1:exon

LOC100079562
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC100079562
product: tubulin beta-2B chain
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 510 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 39 samples with support for all annotated introns
transcript id: XM_029056461.2
SIO_010081: LOC100079562
subclass of: SO_0000673
so part of: LOC100079562
location: complement(join(1365630..1366919,1367240..1367350,1368154..1368262,1368890..1369076))
location: region:1365630-1369076:-1
so has part: feature:1368890-1369076:-1:exon
so has part: feature:1368154-1368262:-1:exon
so has part: feature:1367240-1367350:-1:exon
so has part: feature:1365630-1366919:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1368890-1369076:-1:exon

position:1368890:-1
position: 1368890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1368154-1368262:-1:exon

position:1368154:-1
position: 1368154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1368262:-1
position: 1368262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1367240-1367350:-1:exon

position:1367240:-1
position: 1367240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1367350:-1
position: 1367350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1365630-1366919:-1:exon

position:1366919:-1
position: 1366919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100079562
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC100079562
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tubulin beta-2B chain
translation: MERAGRRGFGVAGSGAAVVQPGESGPASPASQPSQPSAMREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEEGEDEA
SIO_010081: LOC100079562
subclass of: SO_0000673
so part of: LOC100079562
location: complement(join(1365859..1366919,1367240..1367350,1368154..1368262,1368890..1369060))
location: region:1365859-1369060:-1
so has part: feature:1368890-1369060:-1:exon
so has part: feature:1368154-1368262:-1:exon
so has part: feature:1367240-1367350:-1:exon
so has part: feature:1365859-1366919:-1:exon

XP_028912294.2
type: Protein
SIO_000068: ncbiprotein

position:1365859:-1
position: 1365859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1369060:-1
position: 1369060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1368890-1369060:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1368154-1368262:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1367240-1367350:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1365859-1366919:-1:exon

LOC114808670
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808670
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1389358..1401799
location: region:1389358-1401799:1
so has part: feature:1389358-1401799:1:exon
subclass of: SO_0000010

114808670
type: Gene
SIO_000068: ncbigene

position:1389358:1
position: 1389358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1401799:1
position: 1401799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1389358-1401799:1:exon

LOC114808670
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808670
product: proteasome assembly chaperone 4-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
transcript id: XM_029056462.2
SIO_010081: LOC114808670
subclass of: SO_0000673
so part of: LOC114808670
location: join(1389358..1389638,1395710..1395785,1401606..1401799)
location: region:1389358-1401799:1
so has part: feature:1389358-1389638:1:exon
so has part: feature:1395710-1395785:1:exon
so has part: feature:1401606-1401799:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1389358-1389638:1:exon

position:1389638:1
position: 1389638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1395710-1395785:1:exon

position:1395710:1
position: 1395710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1395785:1
position: 1395785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1401606-1401799:1:exon

position:1401606:1
position: 1401606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114808670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808670
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proteasome assembly chaperone 4-like
translation: MEEQPGPGPGGRISLHNFSARLWEQLIHFHVMQLTDSLFLWVGAAPSLRNLAVAMCSRYDSIPLTTSLIGDASDTTSNSKAQRLARKTKKQVFVSYILQNTDCNFTLLIENRIKEEMEAFPVKF
SIO_010081: LOC114808670
subclass of: SO_0000673
so part of: LOC114808670
location: join(1389462..1389638,1395710..1395785,1401606..1401727)
location: region:1389462-1401727:1
so has part: feature:1389462-1389638:1:exon
so has part: feature:1395710-1395785:1:exon
so has part: feature:1401606-1401727:1:exon

XP_028912295.1
type: Protein
SIO_000068: ncbiprotein

position:1389462:1
position: 1389462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1401727:1
position: 1401727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1389462-1389638:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1395710-1395785:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1401606-1401727:1:exon

LOC114808666
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808666
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1405567..1536577)
location: region:1405567-1536577:-1
so has part: feature:1405567-1536577:-1:exon
subclass of: SO_0000010

114808666
type: Gene
SIO_000068: ncbigene

position:1405567:-1
position: 1405567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1536577:-1
position: 1536577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1405567-1536577:-1:exon

LOC114808666
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808666
product: solute carrier family 22 member 23-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_039910966.1
SIO_010081: LOC114808666
subclass of: SO_0000673
so part of: LOC114808666
location: complement(join(1405567..1407288,1417461..1417584,1418613..1418645,1421095..1421327,1424162..1424264,1427907..1428034,1439532..1439700,1512847..1513001,1516720..1516823,1535739..1535901,1536008..1536314,1536400..1536577))
location: region:1405567-1536577:-1
so has part: feature:1536400-1536577:-1:exon
so has part: feature:1536008-1536314:-1:exon
so has part: feature:1535739-1535901:-1:exon
so has part: feature:1516720-1516823:-1:exon
so has part: feature:1512847-1513001:-1:exon
so has part: feature:1439532-1439700:-1:exon
so has part: feature:1427907-1428034:-1:exon
so has part: feature:1424162-1424264:-1:exon
so has part: feature:1421095-1421327:-1:exon
so has part: feature:1418613-1418645:-1:exon
so has part: feature:1417461-1417584:-1:exon
so has part: feature:1405567-1407288:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1536400-1536577:-1:exon

position:1536400:-1
position: 1536400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1536008-1536314:-1:exon

position:1536008:-1
position: 1536008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1536314:-1
position: 1536314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1535739-1535901:-1:exon

position:1535739:-1
position: 1535739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1535901:-1
position: 1535901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1516720-1516823:-1:exon

position:1516720:-1
position: 1516720
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1516823:-1
position: 1516823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1512847-1513001:-1:exon

position:1512847:-1
position: 1512847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1513001:-1
position: 1513001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1439532-1439700:-1:exon

position:1439532:-1
position: 1439532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1439700:-1
position: 1439700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1427907-1428034:-1:exon

position:1427907:-1
position: 1427907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1428034:-1
position: 1428034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1424162-1424264:-1:exon

position:1424162:-1
position: 1424162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1424264:-1
position: 1424264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1421095-1421327:-1:exon

position:1421095:-1
position: 1421095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1421327:-1
position: 1421327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1418613-1418645:-1:exon

position:1418613:-1
position: 1418613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1418645:-1
position: 1418645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1417461-1417584:-1:exon

position:1417461:-1
position: 1417461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1417584:-1
position: 1417584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1405567-1407288:-1:exon

position:1407288:-1
position: 1407288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808666
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808666
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: solute carrier family 22 member 23-like
translation: MAIDRRREARGGEGGGGRYQPPPEENGALPAGGAGGAGGPGGAAAVAAAAAAAAGSGGGGSPAGGGAGPSALLVDYDASVLPLLGGLGGGYQKTLVLLTWIPALFIGFSQYSDSFLLAQPDYWCRGARRGSAAAAAAPLPANWTGPPPTPRTTTGTGTGTGTGRGTRTPPPPPPPXASNSTDCQCHQWHYRIRAGLVQNVVSKWDLVCDSAWKVHIAKFSLLVGLIFGYLVTGCIADWFGRRPVLLFSIVFILVFGLTVALSVNVTMFSTLRFFEGFCLAGIILTLYALRIELCPPGHRFMVAMVASFVAMAGQFLMPGLAALCRDWQVLQALIICPFLLMLLYWSIFPESLRWLMATQQYEPAKKLILHFTYKNRMNTEGDIKGVMPELEKELSRRPKKVCIVKVVGTRNLWKNIVVLCVNSLTGFGIHHCFARSMMGHETKVMILNNFYADYYTMAGITLASCLAMCPVVGFLGRRGGLLLFMILTALASLLQLGLLNLIGKYSHHLDSGMTESVREKFSTTFSIIGMFASHAVGSLSVFFCAEITPTVIRCGGLGLVLASAGFGMLTAPIMDLHNQKGYFLHHVIFACCTLICIICILLLPESKNQNLPENIFNGEHYTRQPLLPHRRGEQPLLPTTSELKDYSGLHDVVAVGDRLPDNATVNGVRSM
SIO_010081: LOC114808666
subclass of: SO_0000673
so part of: LOC114808666
location: complement(join(1406931..1407288,1417461..1417584,1418613..1418645,1421095..1421327,1424162..1424264,1427907..1428034,1439532..1439700,1512847..1513001,1516720..1516823,1535739..1535901,1536008..1536314,1536400..1536537))
location: region:1406931-1536537:-1
so has part: feature:1536400-1536537:-1:exon
so has part: feature:1536008-1536314:-1:exon
so has part: feature:1535739-1535901:-1:exon
so has part: feature:1516720-1516823:-1:exon
so has part: feature:1512847-1513001:-1:exon
so has part: feature:1439532-1439700:-1:exon
so has part: feature:1427907-1428034:-1:exon
so has part: feature:1424162-1424264:-1:exon
so has part: feature:1421095-1421327:-1:exon
so has part: feature:1418613-1418645:-1:exon
so has part: feature:1417461-1417584:-1:exon
so has part: feature:1406931-1407288:-1:exon

XP_039766900.1
type: Protein
SIO_000068: ncbiprotein

position:1406931:-1
position: 1406931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1536537:-1
position: 1536537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1536400-1536537:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1536008-1536314:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1535739-1535901:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1516720-1516823:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1512847-1513001:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1439532-1439700:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1427907-1428034:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1424162-1424264:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1421095-1421327:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1418613-1418645:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1417461-1417584:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1406931-1407288:-1:exon

LOC114808677
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808677
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 1527450..1527588
location: region:1527450-1527588:1
so has part: feature:1527450-1527588:1:exon
subclass of: SO_0000578

114808677
type: Gene
SIO_000068: ncbigene

position:1527450:1
position: 1527450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1527588:1
position: 1527588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1527450-1527588:1:exon

LOC114808677
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9258
nc RNA class: snoRNA
gene: LOC114808677
product: small nucleolar RNA SNORA7
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00409
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003756496.1
SIO_010081: LOC114808677
subclass of: SO_0000673
so part of: LOC114808677
location: 1527450..1527588
location: region:1527450-1527588:1
so has part: feature:1527450-1527588:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1527450-1527588:1:exon

LOC114805393
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114805393
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1577540..1604310
location: region:1577540-1604310:1
so has part: feature:1577540-1604310:1:exon
subclass of: SO_0000010

114805393
type: Gene
SIO_000068: ncbigene

position:1577540:1
position: 1577540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1604310:1
position: 1604310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1577540-1604310:1:exon

LOC114805393
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114805393
product: serine/threonine-protein kinase PRP4 homolog
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_039910967.1
SIO_010081: LOC114805393
subclass of: SO_0000673
so part of: LOC114805393
location: join(1577540..1577723,1578659..1579864,1583211..1583387,1583646..1583801,1584734..1584815,1585161..1585371,1586306..1586379,1586770..1586860,1587554..1587701,1587979..1588116,1588845..1588998,1593931..1594045,1595722..1595873,1598406..1598492,1601190..1603141,1604236..1604310)
location: region:1577540-1604310:1
so has part: feature:1577540-1577723:1:exon
so has part: feature:1578659-1579864:1:exon
so has part: feature:1583211-1583387:1:exon
so has part: feature:1583646-1583801:1:exon
so has part: feature:1584734-1584815:1:exon
so has part: feature:1585161-1585371:1:exon
so has part: feature:1586306-1586379:1:exon
so has part: feature:1586770-1586860:1:exon
so has part: feature:1587554-1587701:1:exon
so has part: feature:1587979-1588116:1:exon
so has part: feature:1588845-1588998:1:exon
so has part: feature:1593931-1594045:1:exon
so has part: feature:1595722-1595873:1:exon
so has part: feature:1598406-1598492:1:exon
so has part: feature:1601190-1603141:1:exon
so has part: feature:1604236-1604310:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1577540-1577723:1:exon

position:1577723:1
position: 1577723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1578659-1579864:1:exon

position:1578659:1
position: 1578659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1579864:1
position: 1579864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1583211-1583387:1:exon

position:1583211:1
position: 1583211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1583387:1
position: 1583387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1583646-1583801:1:exon

position:1583646:1
position: 1583646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1583801:1
position: 1583801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1584734-1584815:1:exon

position:1584734:1
position: 1584734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1584815:1
position: 1584815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1585161-1585371:1:exon

position:1585161:1
position: 1585161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1585371:1
position: 1585371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1586306-1586379:1:exon

position:1586306:1
position: 1586306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1586379:1
position: 1586379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1586770-1586860:1:exon

position:1586770:1
position: 1586770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1586860:1
position: 1586860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1587554-1587701:1:exon

position:1587554:1
position: 1587554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1587701:1
position: 1587701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1587979-1588116:1:exon

position:1587979:1
position: 1587979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1588116:1
position: 1588116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1588845-1588998:1:exon

position:1588845:1
position: 1588845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1588998:1
position: 1588998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1593931-1594045:1:exon

position:1593931:1
position: 1593931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1594045:1
position: 1594045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1595722-1595873:1:exon

position:1595722:1
position: 1595722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1595873:1
position: 1595873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1598406-1598492:1:exon

position:1598406:1
position: 1598406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1598492:1
position: 1598492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1601190-1603141:1:exon

position:1601190:1
position: 1601190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1603141:1
position: 1603141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1604236-1604310:1:exon

position:1604236:1
position: 1604236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114805393
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114805393
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase PRP4 homolog
translation: MAAAEPQPPREPPETEDANTSEKSIKEENGEISGNEQPQDKHSRHKKKKHKHRSKRKKHKHSSEEDKDKKHKHKHKHKKHKRKEAIDASDKDGISPMVKRTKIDDLAVLEDLEKQRALIKAELDNELMEGKVQSGMGLILQGYESGSEEEGEIYEKGRNGNRSTTWSSNVKGKLDLVANKTSSKTRSKSRSKERTRHRSNKKKSKGSGEGIKEKTMRSKSKERKKSKSPSKRSKSQDEMSKSKSPILKRRSQEKIGKAKSPMEEKLKIEDKTKSKDCKKSPDVNENKTRDHGKISKSPAELRCKFKDTRSRSRDQKFKRSEVEKEKKPLKSPCKDASSGKENRSPSRRPGRSPKGRSSSPKQPDKLRRSWSPLLNDHRLKQNKSPSRTQSPGRRAKSRSLERKRREPERRRLSSPRTRLREDILSRRERSRDVSPISRWSPTRRRFSRSPIRRRSRSSLRRSRSPRRRSRSPRRRERSHRSRSHLRRRSRSRGRQKRRSRSKVKEDKFKGSLSEGMKVEQESSSDENLEDFDVEEEDEEAVIEQRRIQRQAIVQKYKYLAEDSNLSMPSEPSSPQSSTRTRSPSPEDILERVAADVKEYERENVDTFEASVKAKHNLMTVEQSSGLAQKKLLAPDMFTESDDMFAAYFDSARLRAAGIGKDFKENPNLRDNWTDAEGYYRVNIGEVLDKRYNVYGYTGQGVFSNVVRARDMARANQEVAVKIIRNNELMQKTGLKELEFLKKLNDADPDDKFHCLRLFRHFYHKQHLCLVFEPLSMNLREVLKKYGKDVGLHIKAVRSYSQQLFLALKLLKRCNILHADIKPDNILVNESKTILKLCDFGSASHVADNDITPYLVSRFYRAPEIIIGKSYDYGIDMWSVGCTLCELYTGKILFPGKTNNHMLKLAMDLKGKMPNKMIRKGVFKDQHFDLNLNFMYIEVDKVTEREKVTVMSTINPTKDLLADLIGCQRLPEDQRKKVHQLKDLLDQILMLDPVKRISINQALQHAFIQEKI
SIO_010081: LOC114805393
subclass of: SO_0000673
so part of: LOC114805393
location: join(1577683..1577723,1578659..1579864,1583211..1583387,1583646..1583801,1584734..1584815,1585161..1585371,1586306..1586379,1586770..1586860,1587554..1587701,1587979..1588116,1588845..1588998,1593931..1594045,1595722..1595873,1598406..1598492,1601190..1601393)
location: region:1577683-1601393:1
so has part: feature:1577683-1577723:1:exon
so has part: feature:1578659-1579864:1:exon
so has part: feature:1583211-1583387:1:exon
so has part: feature:1583646-1583801:1:exon
so has part: feature:1584734-1584815:1:exon
so has part: feature:1585161-1585371:1:exon
so has part: feature:1586306-1586379:1:exon
so has part: feature:1586770-1586860:1:exon
so has part: feature:1587554-1587701:1:exon
so has part: feature:1587979-1588116:1:exon
so has part: feature:1588845-1588998:1:exon
so has part: feature:1593931-1594045:1:exon
so has part: feature:1595722-1595873:1:exon
so has part: feature:1598406-1598492:1:exon
so has part: feature:1601190-1601393:1:exon

XP_039766901.1
type: Protein
SIO_000068: ncbiprotein

position:1577683:1
position: 1577683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1601393:1
position: 1601393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1577683-1577723:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1578659-1579864:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1583211-1583387:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1583646-1583801:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1584734-1584815:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1585161-1585371:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1586306-1586379:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1586770-1586860:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1587554-1587701:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1587979-1588116:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1588845-1588998:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1593931-1594045:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1595722-1595873:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1598406-1598492:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1601190-1601393:1:exon

LOC114808675
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808675
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1655178..1802951
location: region:1655178-1802951:1
so has part: feature:1655178-1802951:1:exon
subclass of: SO_0000010

114808675
type: Gene
SIO_000068: ncbigene

position:1655178:1
position: 1655178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1802951:1
position: 1802951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1655178-1802951:1:exon

LOC114808675
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808675
product: chromodomain Y-like protein, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_029056464.1
SIO_010081: LOC114808675
subclass of: SO_0000673
so part of: LOC114808675
location: join(1655178..1655317,1730015..1730681,1774298..1774554,1776227..1776399,1781396..1781606,1799145..1799288,1801321..1802951)
location: region:1655178-1802951:1
so has part: feature:1655178-1655317:1:exon
so has part: feature:1730015-1730681:1:exon
so has part: feature:1774298-1774554:1:exon
so has part: feature:1776227-1776399:1:exon
so has part: feature:1781396-1781606:1:exon
so has part: feature:1799145-1799288:1:exon
so has part: feature:1801321-1802951:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1655178-1655317:1:exon

position:1655317:1
position: 1655317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1730015-1730681:1:exon

position:1730015:1
position: 1730015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1730681:1
position: 1730681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1774298-1774554:1:exon

position:1774298:1
position: 1774298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1774554:1
position: 1774554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1776227-1776399:1:exon

position:1776227:1
position: 1776227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1776399:1
position: 1776399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1781396-1781606:1:exon

position:1781396:1
position: 1781396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1781606:1
position: 1781606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1799145-1799288:1:exon

position:1799145:1
position: 1799145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1799288:1
position: 1799288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1801321-1802951:1:exon

position:1801321:1
position: 1801321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114808675
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808675
product: chromodomain Y-like protein, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_029056468.1
SIO_010081: LOC114808675
subclass of: SO_0000673
so part of: LOC114808675
location: join(1655178..1655317,1730015..1730681,1774364..1774554,1776227..1776399,1781396..1781606,1799145..1799288,1801321..1802951)
location: region:1655178-1802951:1
so has part: feature:1655178-1655317:1:exon
so has part: feature:1730015-1730681:1:exon
so has part: feature:1774364-1774554:1:exon
so has part: feature:1776227-1776399:1:exon
so has part: feature:1781396-1781606:1:exon
so has part: feature:1799145-1799288:1:exon
so has part: feature:1801321-1802951:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1655178-1655317:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1730015-1730681:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1774364-1774554:1:exon

position:1774364:1
position: 1774364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1776227-1776399:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1781396-1781606:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1799145-1799288:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1801321-1802951:1:exon

LOC114808675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808675
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: chromodomain Y-like protein isoform X1
translation: MASEELYEVERIVDRRKNKKGKIEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHEFNRHHNEKQKESILTRANRMSLNNARKQISRSTNSSFSKTSPKSLVIGKVHQSKNNPLFTASQKLRKNTSPSFSNRKDMDLAKSGIKILVPKSPIKSRTAVDDFQNESPNKLDQIDQDQEDSLAPEMAAEKPVGAFLGPGAERARMGSRPRIHSLVPQLPVPVTATITSTLTINGKGSSTFLDTLATNGTTSVQTSVSGVTASKRRFMEDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNSLNPEVMKEVQSALNTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESSKMVEAIRNFVHTLIQFKKPIIAAINGPAIGLGASILPLCDVIWANEKAWFQTPYTTFGQSPDGCSSLSFPRIMGLASANEMLFSGRKLTAQEACAKGLVSQVFWPGTFTQEVMFRIKELATCNSLVLEESKGLVRNVMKMDLEQANERECEMLKKIWGSAQGMDSILKYLQRKIDEF
SIO_010081: LOC114808675
subclass of: SO_0000673
so part of: LOC114808675
location: join(1655294..1655317,1730015..1730681,1774298..1774554,1776227..1776399,1781396..1781606,1799145..1799288,1801321..1801479)
location: region:1655294-1801479:1
so has part: feature:1655294-1655317:1:exon
so has part: feature:1730015-1730681:1:exon
so has part: feature:1774298-1774554:1:exon
so has part: feature:1776227-1776399:1:exon
so has part: feature:1781396-1781606:1:exon
so has part: feature:1799145-1799288:1:exon
so has part: feature:1801321-1801479:1:exon

XP_028912297.1
type: Protein
SIO_000068: ncbiprotein

position:1655294:1
position: 1655294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1801479:1
position: 1801479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1655294-1655317:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1730015-1730681:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1774298-1774554:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1776227-1776399:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1781396-1781606:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1799145-1799288:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1801321-1801479:1:exon

LOC114808675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808675
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: chromodomain Y-like protein isoform X2
translation: MASEELYEVERIVDRRKNKKGKIEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHEFNRHHNEKQKESILTRANRMSLNNARKQISRSTNSSFSKTSPKSLVIGKVHQSKNNPLFTASQKLRKNTSPSFSNRKDMDLAKSGIKILVPKSPIKSRTAVDDFQNESPNKLDQIDQDQEDSLAPEMAAEKPVGAFLGPGAERARMGSRPRIHSLVPQLPVPVTATITSTLTINGKGVTASKRRFMEDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNSLNPEVMKEVQSALNTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESSKMVEAIRNFVHTLIQFKKPIIAAINGPAIGLGASILPLCDVIWANEKAWFQTPYTTFGQSPDGCSSLSFPRIMGLASANEMLFSGRKLTAQEACAKGLVSQVFWPGTFTQEVMFRIKELATCNSLVLEESKGLVRNVMKMDLEQANERECEMLKKIWGSAQGMDSILKYLQRKIDEF
SIO_010081: LOC114808675
subclass of: SO_0000673
so part of: LOC114808675
location: join(1655294..1655317,1730015..1730681,1774364..1774554,1776227..1776399,1781396..1781606,1799145..1799288,1801321..1801479)
location: region:1655294-1801479:1
so has part: feature:1655294-1655317:1:exon
so has part: feature:1730015-1730681:1:exon
so has part: feature:1774364-1774554:1:exon
so has part: feature:1776227-1776399:1:exon
so has part: feature:1781396-1781606:1:exon
so has part: feature:1799145-1799288:1:exon
so has part: feature:1801321-1801479:1:exon

XP_028912301.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1655294-1655317:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1730015-1730681:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1774364-1774554:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1776227-1776399:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1781396-1781606:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1799145-1799288:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1801321-1801479:1:exon

LOC114808660
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808660
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2433237..2639155
location: region:2433237-2639155:1
so has part: feature:2433237-2639155:1:exon
subclass of: SO_0000010

114808660
type: Gene
SIO_000068: ncbigene

position:2433237:1
position: 2433237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2639155:1
position: 2639155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2433237-2639155:1:exon

LOC114808660
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808660
product: ras-responsive element-binding protein 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_039910969.1
SIO_010081: LOC114808660
subclass of: SO_0000673
so part of: LOC114808660
location: join(2433237..2433521,2480090..2480338,2510753..2510876,2533521..2533717,2541514..2541603,2545002..2545165,2569733..2569874,2571820..2571956,2590373..2590562,2598379..2601295,2630674..2631516,2635537..2639155)
location: region:2433237-2639155:1
so has part: feature:2433237-2433521:1:exon
so has part: feature:2480090-2480338:1:exon
so has part: feature:2510753-2510876:1:exon
so has part: feature:2533521-2533717:1:exon
so has part: feature:2541514-2541603:1:exon
so has part: feature:2545002-2545165:1:exon
so has part: feature:2569733-2569874:1:exon
so has part: feature:2571820-2571956:1:exon
so has part: feature:2590373-2590562:1:exon
so has part: feature:2598379-2601295:1:exon
so has part: feature:2630674-2631516:1:exon
so has part: feature:2635537-2639155:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2433237-2433521:1:exon

position:2433521:1
position: 2433521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2480090-2480338:1:exon

position:2480090:1
position: 2480090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2480338:1
position: 2480338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2510753-2510876:1:exon

position:2510753:1
position: 2510753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2510876:1
position: 2510876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2533521-2533717:1:exon

position:2533521:1
position: 2533521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2533717:1
position: 2533717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2541514-2541603:1:exon

position:2541514:1
position: 2541514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2541603:1
position: 2541603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2545002-2545165:1:exon

position:2545002:1
position: 2545002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2545165:1
position: 2545165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2569733-2569874:1:exon

position:2569733:1
position: 2569733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2569874:1
position: 2569874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2571820-2571956:1:exon

position:2571820:1
position: 2571820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2571956:1
position: 2571956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2590373-2590562:1:exon

position:2590373:1
position: 2590373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2590562:1
position: 2590562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2598379-2601295:1:exon

position:2598379:1
position: 2598379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2601295:1
position: 2601295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2630674-2631516:1:exon

position:2630674:1
position: 2630674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2631516:1
position: 2631516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2635537-2639155:1:exon

position:2635537:1
position: 2635537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114808660
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808660
product: ras-responsive element-binding protein 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_039910971.1
SIO_010081: LOC114808660
subclass of: SO_0000673
so part of: LOC114808660
location: join(2433237..2433521,2480103..2480338,2510753..2510876,2533521..2533717,2541514..2541603,2545002..2545165,2569733..2569874,2571820..2571956,2590373..2590562,2598379..2601295,2630674..2631516,2635537..2639155)
location: region:2433237-2639155:1
so has part: feature:2433237-2433521:1:exon
so has part: feature:2480103-2480338:1:exon
so has part: feature:2510753-2510876:1:exon
so has part: feature:2533521-2533717:1:exon
so has part: feature:2541514-2541603:1:exon
so has part: feature:2545002-2545165:1:exon
so has part: feature:2569733-2569874:1:exon
so has part: feature:2571820-2571956:1:exon
so has part: feature:2590373-2590562:1:exon
so has part: feature:2598379-2601295:1:exon
so has part: feature:2630674-2631516:1:exon
so has part: feature:2635537-2639155:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2433237-2433521:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2480103-2480338:1:exon

position:2480103:1
position: 2480103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2510753-2510876:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2533521-2533717:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2541514-2541603:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2545002-2545165:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2569733-2569874:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2571820-2571956:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2590373-2590562:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2598379-2601295:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2630674-2631516:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2635537-2639155:1:exon

LOC114808660
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808660
product: ras-responsive element-binding protein 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_039910970.1
SIO_010081: LOC114808660
subclass of: SO_0000673
so part of: LOC114808660
location: join(2459205..2459312,2480090..2480338,2510753..2510876,2533521..2533717,2541514..2541603,2545002..2545165,2569733..2569874,2571820..2571956,2590373..2590562,2598379..2601295,2630674..2631516,2635537..2639155)
location: region:2459205-2639155:1
so has part: feature:2459205-2459312:1:exon
so has part: feature:2480090-2480338:1:exon
so has part: feature:2510753-2510876:1:exon
so has part: feature:2533521-2533717:1:exon
so has part: feature:2541514-2541603:1:exon
so has part: feature:2545002-2545165:1:exon
so has part: feature:2569733-2569874:1:exon
so has part: feature:2571820-2571956:1:exon
so has part: feature:2590373-2590562:1:exon
so has part: feature:2598379-2601295:1:exon
so has part: feature:2630674-2631516:1:exon
so has part: feature:2635537-2639155:1:exon

position:2459205:1
position: 2459205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2459205-2459312:1:exon

position:2459312:1
position: 2459312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2480090-2480338:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2510753-2510876:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2533521-2533717:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2541514-2541603:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2545002-2545165:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2569733-2569874:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2571820-2571956:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2590373-2590562:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2598379-2601295:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2630674-2631516:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2635537-2639155:1:exon

LOC114808660
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808660
product: ras-responsive element-binding protein 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_039910968.1
SIO_010081: LOC114808660
subclass of: SO_0000673
so part of: LOC114808660
location: join(2459205..2459312,2480103..2480338,2510753..2510876,2533521..2533717,2541514..2541603,2545002..2545165,2569733..2569874,2571820..2571956,2590373..2590562,2598379..2601295,2630674..2631516,2635537..2639155)
location: region:2459205-2639155:1
so has part: feature:2459205-2459312:1:exon
so has part: feature:2480103-2480338:1:exon
so has part: feature:2510753-2510876:1:exon
so has part: feature:2533521-2533717:1:exon
so has part: feature:2541514-2541603:1:exon
so has part: feature:2545002-2545165:1:exon
so has part: feature:2569733-2569874:1:exon
so has part: feature:2571820-2571956:1:exon
so has part: feature:2590373-2590562:1:exon
so has part: feature:2598379-2601295:1:exon
so has part: feature:2630674-2631516:1:exon
so has part: feature:2635537-2639155:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2459205-2459312:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2480103-2480338:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2510753-2510876:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2533521-2533717:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2541514-2541603:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2545002-2545165:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2569733-2569874:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2571820-2571956:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2590373-2590562:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2598379-2601295:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2630674-2631516:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2635537-2639155:1:exon

LOC114808660
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9258
gene: LOC114808660
product: ras-responsive element-binding protein 1, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005659696.1
SIO_010081: LOC114808660
so part of: LOC114808660
location: join(2459205..2459312,2480103..2480338,2510753..2510876,2533521..2533717,2541514..2541603,2545002..2545165,2569733..2569874,2571820..2571956,2590373..2590562,2598379..2601295,2630674..2631516,2635537..2637530,2638605..2639155)
location: region:2459205-2639155:1
so has part: feature:2459205-2459312:1:exon
so has part: feature:2480103-2480338:1:exon
so has part: feature:2510753-2510876:1:exon
so has part: feature:2533521-2533717:1:exon
so has part: feature:2541514-2541603:1:exon
so has part: feature:2545002-2545165:1:exon
so has part: feature:2569733-2569874:1:exon
so has part: feature:2571820-2571956:1:exon
so has part: feature:2590373-2590562:1:exon
so has part: feature:2598379-2601295:1:exon
so has part: feature:2630674-2631516:1:exon
so has part: feature:2635537-2637530:1:exon
so has part: feature:2638605-2639155:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2459205-2459312:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2480103-2480338:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2510753-2510876:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2533521-2533717:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2541514-2541603:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2545002-2545165:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2569733-2569874:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2571820-2571956:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2590373-2590562:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2598379-2601295:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2630674-2631516:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2635537-2637530:1:exon

position:2637530:1
position: 2637530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2638605-2639155:1:exon

position:2638605:1
position: 2638605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114808660
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808660
product: ras-responsive element-binding protein 1, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_039910972.1
SIO_010081: LOC114808660
subclass of: SO_0000673
so part of: LOC114808660
location: join(2459205..2459312,2480103..2480338,2510753..2510876,2541514..2541603,2545002..2545165,2569733..2569874,2571820..2571956,2590373..2590562,2598379..2601295,2630674..2631516,2635537..2639155)
location: region:2459205-2639155:1
so has part: feature:2459205-2459312:1:exon
so has part: feature:2480103-2480338:1:exon
so has part: feature:2510753-2510876:1:exon
so has part: feature:2541514-2541603:1:exon
so has part: feature:2545002-2545165:1:exon
so has part: feature:2569733-2569874:1:exon
so has part: feature:2571820-2571956:1:exon
so has part: feature:2590373-2590562:1:exon
so has part: feature:2598379-2601295:1:exon
so has part: feature:2630674-2631516:1:exon
so has part: feature:2635537-2639155:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2459205-2459312:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2480103-2480338:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2510753-2510876:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2541514-2541603:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2545002-2545165:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2569733-2569874:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2571820-2571956:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2590373-2590562:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2598379-2601295:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2630674-2631516:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2635537-2639155:1:exon

LOC114808660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808660
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ras-responsive element-binding protein 1 isoform X1
translation: MSMGKVAQNGGSSQNVKSPAKSSGQNRIGRRNQEAKEEKYSNTCPLCEKICTTQHQLTMHIRQHNTHTGGAEHSCSICRKTLSSASSLDRHMLVHSGERPYKCSVCGQSFTTNGNMHRHMKIHEKNPNSTANTVTSSPLKRRRLTSKRKLSQEAEAEKELTPAKKVVGNSPSGETEKRTDEVFHCPVCFKEFVCKYGLETHMESHPDNSLRCDICCISFRTHRGLLRHNAVIHRQFPRDPKGKPFIQNNPSIPAGFHDLGFIDFSCRKFPHISQVWCETNLRRCISECHHFICQTCNKAFPMLSALTLHTYTHVGDQGNDKYELQPNHTVGESPDQNVFMASLGLRSTKDIQPTRQESSTSDVLHGVCLETQMSHLHQEPGSPALLSTSALDPSGLGSSLGVLPPTKEALKPLSLQPFQKGFIIQPDSSTVVKPISSESAIELADIQQILKMACSVPPQISLPPLSKAPSMPMQSIFKHMPPLKPKPLVTPRMVVATSTPPPLISAQQASLGCINPSLLPPPVRLIKNTVEAASTSLLQSQVGAQPHAAVQVFFQRNTEAPRQPEVKTQLEQDRITEALLPLNMEAKIKQEVMEGDLKAIIAGAASKKTQAMRKVLYPCRFCDQVFTFSGVLRAHVRSHLGISPYQCNICDYIAADKAALIRHLRTHSGERPYICKICHYPFTVKANCERHLRKKHLKATRKDIEKNIEYVSSNAAEMVDAFCSPGTVCQVCGEDLKHYRALRIHMRTHSGGSQKGHKPFKCKECSTAFSAKRSCVHHILKQHLHVPECEIENYVLAVDYRGGRYQKGPLPESSSSLSSSSTSSSSSSSSSTSFLSLLNKGSGKGTCGVHKPLAAILEPQNGFLWGGAPSPHISIKLEPASNSLSDFSEPLDFSQKSKDPSLVKVKQENPSILSPSSLAPYDCLVEPIDLSIPKGFRRDIDGPLALGKAWKPDLGPGGSDPPYGCQPPCPNPSVIFGSRRSLEKPAATTTTVPVLQHLPQLLKGPLHLTMPIVSPSFLSNAALLRPLRPKPPPLLPKPSVAKELPPLASIAQIISSVSLAPALLKAEVVDTGFNLASCSLRLEKPGATKPKGDSATATILKEPGDPPLPRDSPGADSPELGLASSFKKWCHKKVTKNQARVIGSGVDLESSGEFASIENMLATTDTNKFSPFLQPADEHVTEEGATLAAADWNRMSSDNQDGPVDKQQQRGQQNPYTNCLQKVICPFCPRVFSWTSSLQRHVLTHTDSQSDIEMPATGIEILDLTSREKQPETVAVLSHEEEDCPADGQDKQQADSPDEEGMSNEEEEEEEDEEEDEEEKKGEGEEEEEAEEGLEEKDEDDSISSKSLDLNFASKLMDFKLTDSDQSLGANGVSSQNEKKYACDICRKSVKFTASMSRHKKSHTREHRRNEKTSEDESRSGPEGNSDTPFGDIDPEQEERLVNLKVVESPVVGKAPTGKENEESESGSEGENMLERKSSGKSDNDKKPKTNGAKSISKADKRKKVCTVCNKRFWSLQDLTRHMRSHTGERPYKCQTCERTFTLKHSLVRHQRIHQKVKNTKHQSKRRAKKERSECNSENESAHSSANPISENEGDLNLALSSHLAITQSQRESLTRAVKDLAHKEESAGEGLAGVGLPEPSKNAQQSALGGSIQEQESQGNTDGRSPSVFIQDLLGGHGKVMPVNHIFASTDSASQLVGME
SIO_010081: LOC114808660
subclass of: SO_0000673
so part of: LOC114808660
location: join(2533619..2533717,2541514..2541603,2545002..2545165,2569733..2569874,2571820..2571956,2590373..2590562,2598379..2601295,2630674..2631516,2635537..2636060)
location: region:2533619-2636060:1
so has part: feature:2533619-2533717:1:exon
so has part: feature:2541514-2541603:1:exon
so has part: feature:2545002-2545165:1:exon
so has part: feature:2569733-2569874:1:exon
so has part: feature:2571820-2571956:1:exon
so has part: feature:2590373-2590562:1:exon
so has part: feature:2598379-2601295:1:exon
so has part: feature:2630674-2631516:1:exon
so has part: feature:2635537-2636060:1:exon

XP_039766902.1
type: Protein
SIO_000068: ncbiprotein

position:2533619:1
position: 2533619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2636060:1
position: 2636060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2533619-2533717:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2541514-2541603:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2545002-2545165:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2569733-2569874:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2571820-2571956:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2590373-2590562:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2598379-2601295:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2630674-2631516:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2635537-2636060:1:exon

LOC114808660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808660
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ras-responsive element-binding protein 1 isoform X1
translation: MSMGKVAQNGGSSQNVKSPAKSSGQNRIGRRNQEAKEEKYSNTCPLCEKICTTQHQLTMHIRQHNTHTGGAEHSCSICRKTLSSASSLDRHMLVHSGERPYKCSVCGQSFTTNGNMHRHMKIHEKNPNSTANTVTSSPLKRRRLTSKRKLSQEAEAEKELTPAKKVVGNSPSGETEKRTDEVFHCPVCFKEFVCKYGLETHMESHPDNSLRCDICCISFRTHRGLLRHNAVIHRQFPRDPKGKPFIQNNPSIPAGFHDLGFIDFSCRKFPHISQVWCETNLRRCISECHHFICQTCNKAFPMLSALTLHTYTHVGDQGNDKYELQPNHTVGESPDQNVFMASLGLRSTKDIQPTRQESSTSDVLHGVCLETQMSHLHQEPGSPALLSTSALDPSGLGSSLGVLPPTKEALKPLSLQPFQKGFIIQPDSSTVVKPISSESAIELADIQQILKMACSVPPQISLPPLSKAPSMPMQSIFKHMPPLKPKPLVTPRMVVATSTPPPLISAQQASLGCINPSLLPPPVRLIKNTVEAASTSLLQSQVGAQPHAAVQVFFQRNTEAPRQPEVKTQLEQDRITEALLPLNMEAKIKQEVMEGDLKAIIAGAASKKTQAMRKVLYPCRFCDQVFTFSGVLRAHVRSHLGISPYQCNICDYIAADKAALIRHLRTHSGERPYICKICHYPFTVKANCERHLRKKHLKATRKDIEKNIEYVSSNAAEMVDAFCSPGTVCQVCGEDLKHYRALRIHMRTHSGGSQKGHKPFKCKECSTAFSAKRSCVHHILKQHLHVPECEIENYVLAVDYRGGRYQKGPLPESSSSLSSSSTSSSSSSSSSTSFLSLLNKGSGKGTCGVHKPLAAILEPQNGFLWGGAPSPHISIKLEPASNSLSDFSEPLDFSQKSKDPSLVKVKQENPSILSPSSLAPYDCLVEPIDLSIPKGFRRDIDGPLALGKAWKPDLGPGGSDPPYGCQPPCPNPSVIFGSRRSLEKPAATTTTVPVLQHLPQLLKGPLHLTMPIVSPSFLSNAALLRPLRPKPPPLLPKPSVAKELPPLASIAQIISSVSLAPALLKAEVVDTGFNLASCSLRLEKPGATKPKGDSATATILKEPGDPPLPRDSPGADSPELGLASSFKKWCHKKVTKNQARVIGSGVDLESSGEFASIENMLATTDTNKFSPFLQPADEHVTEEGATLAAADWNRMSSDNQDGPVDKQQQRGQQNPYTNCLQKVICPFCPRVFSWTSSLQRHVLTHTDSQSDIEMPATGIEILDLTSREKQPETVAVLSHEEEDCPADGQDKQQADSPDEEGMSNEEEEEEEDEEEDEEEKKGEGEEEEEAEEGLEEKDEDDSISSKSLDLNFASKLMDFKLTDSDQSLGANGVSSQNEKKYACDICRKSVKFTASMSRHKKSHTREHRRNEKTSEDESRSGPEGNSDTPFGDIDPEQEERLVNLKVVESPVVGKAPTGKENEESESGSEGENMLERKSSGKSDNDKKPKTNGAKSISKADKRKKVCTVCNKRFWSLQDLTRHMRSHTGERPYKCQTCERTFTLKHSLVRHQRIHQKVKNTKHQSKRRAKKERSECNSENESAHSSANPISENEGDLNLALSSHLAITQSQRESLTRAVKDLAHKEESAGEGLAGVGLPEPSKNAQQSALGGSIQEQESQGNTDGRSPSVFIQDLLGGHGKVMPVNHIFASTDSASQLVGME
SIO_010081: LOC114808660
subclass of: SO_0000673
so part of: LOC114808660
location: join(2533619..2533717,2541514..2541603,2545002..2545165,2569733..2569874,2571820..2571956,2590373..2590562,2598379..2601295,2630674..2631516,2635537..2636060)
location: region:2533619-2636060:1
so has part: feature:2533619-2533717:1:exon
so has part: feature:2541514-2541603:1:exon
so has part: feature:2545002-2545165:1:exon
so has part: feature:2569733-2569874:1:exon
so has part: feature:2571820-2571956:1:exon
so has part: feature:2590373-2590562:1:exon
so has part: feature:2598379-2601295:1:exon
so has part: feature:2630674-2631516:1:exon
so has part: feature:2635537-2636060:1:exon

XP_039766903.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2533619-2533717:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2541514-2541603:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2545002-2545165:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2569733-2569874:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2571820-2571956:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2590373-2590562:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2598379-2601295:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2630674-2631516:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2635537-2636060:1:exon

LOC114808660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808660
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ras-responsive element-binding protein 1 isoform X1
translation: MSMGKVAQNGGSSQNVKSPAKSSGQNRIGRRNQEAKEEKYSNTCPLCEKICTTQHQLTMHIRQHNTHTGGAEHSCSICRKTLSSASSLDRHMLVHSGERPYKCSVCGQSFTTNGNMHRHMKIHEKNPNSTANTVTSSPLKRRRLTSKRKLSQEAEAEKELTPAKKVVGNSPSGETEKRTDEVFHCPVCFKEFVCKYGLETHMESHPDNSLRCDICCISFRTHRGLLRHNAVIHRQFPRDPKGKPFIQNNPSIPAGFHDLGFIDFSCRKFPHISQVWCETNLRRCISECHHFICQTCNKAFPMLSALTLHTYTHVGDQGNDKYELQPNHTVGESPDQNVFMASLGLRSTKDIQPTRQESSTSDVLHGVCLETQMSHLHQEPGSPALLSTSALDPSGLGSSLGVLPPTKEALKPLSLQPFQKGFIIQPDSSTVVKPISSESAIELADIQQILKMACSVPPQISLPPLSKAPSMPMQSIFKHMPPLKPKPLVTPRMVVATSTPPPLISAQQASLGCINPSLLPPPVRLIKNTVEAASTSLLQSQVGAQPHAAVQVFFQRNTEAPRQPEVKTQLEQDRITEALLPLNMEAKIKQEVMEGDLKAIIAGAASKKTQAMRKVLYPCRFCDQVFTFSGVLRAHVRSHLGISPYQCNICDYIAADKAALIRHLRTHSGERPYICKICHYPFTVKANCERHLRKKHLKATRKDIEKNIEYVSSNAAEMVDAFCSPGTVCQVCGEDLKHYRALRIHMRTHSGGSQKGHKPFKCKECSTAFSAKRSCVHHILKQHLHVPECEIENYVLAVDYRGGRYQKGPLPESSSSLSSSSTSSSSSSSSSTSFLSLLNKGSGKGTCGVHKPLAAILEPQNGFLWGGAPSPHISIKLEPASNSLSDFSEPLDFSQKSKDPSLVKVKQENPSILSPSSLAPYDCLVEPIDLSIPKGFRRDIDGPLALGKAWKPDLGPGGSDPPYGCQPPCPNPSVIFGSRRSLEKPAATTTTVPVLQHLPQLLKGPLHLTMPIVSPSFLSNAALLRPLRPKPPPLLPKPSVAKELPPLASIAQIISSVSLAPALLKAEVVDTGFNLASCSLRLEKPGATKPKGDSATATILKEPGDPPLPRDSPGADSPELGLASSFKKWCHKKVTKNQARVIGSGVDLESSGEFASIENMLATTDTNKFSPFLQPADEHVTEEGATLAAADWNRMSSDNQDGPVDKQQQRGQQNPYTNCLQKVICPFCPRVFSWTSSLQRHVLTHTDSQSDIEMPATGIEILDLTSREKQPETVAVLSHEEEDCPADGQDKQQADSPDEEGMSNEEEEEEEDEEEDEEEKKGEGEEEEEAEEGLEEKDEDDSISSKSLDLNFASKLMDFKLTDSDQSLGANGVSSQNEKKYACDICRKSVKFTASMSRHKKSHTREHRRNEKTSEDESRSGPEGNSDTPFGDIDPEQEERLVNLKVVESPVVGKAPTGKENEESESGSEGENMLERKSSGKSDNDKKPKTNGAKSISKADKRKKVCTVCNKRFWSLQDLTRHMRSHTGERPYKCQTCERTFTLKHSLVRHQRIHQKVKNTKHQSKRRAKKERSECNSENESAHSSANPISENEGDLNLALSSHLAITQSQRESLTRAVKDLAHKEESAGEGLAGVGLPEPSKNAQQSALGGSIQEQESQGNTDGRSPSVFIQDLLGGHGKVMPVNHIFASTDSASQLVGME
SIO_010081: LOC114808660
subclass of: SO_0000673
so part of: LOC114808660
location: join(2533619..2533717,2541514..2541603,2545002..2545165,2569733..2569874,2571820..2571956,2590373..2590562,2598379..2601295,2630674..2631516,2635537..2636060)
location: region:2533619-2636060:1
so has part: feature:2533619-2533717:1:exon
so has part: feature:2541514-2541603:1:exon
so has part: feature:2545002-2545165:1:exon
so has part: feature:2569733-2569874:1:exon
so has part: feature:2571820-2571956:1:exon
so has part: feature:2590373-2590562:1:exon
so has part: feature:2598379-2601295:1:exon
so has part: feature:2630674-2631516:1:exon
so has part: feature:2635537-2636060:1:exon

XP_039766904.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2533619-2533717:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2541514-2541603:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2545002-2545165:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2569733-2569874:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2571820-2571956:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2590373-2590562:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2598379-2601295:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2630674-2631516:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2635537-2636060:1:exon

LOC114808660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808660
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ras-responsive element-binding protein 1 isoform X1
translation: MSMGKVAQNGGSSQNVKSPAKSSGQNRIGRRNQEAKEEKYSNTCPLCEKICTTQHQLTMHIRQHNTHTGGAEHSCSICRKTLSSASSLDRHMLVHSGERPYKCSVCGQSFTTNGNMHRHMKIHEKNPNSTANTVTSSPLKRRRLTSKRKLSQEAEAEKELTPAKKVVGNSPSGETEKRTDEVFHCPVCFKEFVCKYGLETHMESHPDNSLRCDICCISFRTHRGLLRHNAVIHRQFPRDPKGKPFIQNNPSIPAGFHDLGFIDFSCRKFPHISQVWCETNLRRCISECHHFICQTCNKAFPMLSALTLHTYTHVGDQGNDKYELQPNHTVGESPDQNVFMASLGLRSTKDIQPTRQESSTSDVLHGVCLETQMSHLHQEPGSPALLSTSALDPSGLGSSLGVLPPTKEALKPLSLQPFQKGFIIQPDSSTVVKPISSESAIELADIQQILKMACSVPPQISLPPLSKAPSMPMQSIFKHMPPLKPKPLVTPRMVVATSTPPPLISAQQASLGCINPSLLPPPVRLIKNTVEAASTSLLQSQVGAQPHAAVQVFFQRNTEAPRQPEVKTQLEQDRITEALLPLNMEAKIKQEVMEGDLKAIIAGAASKKTQAMRKVLYPCRFCDQVFTFSGVLRAHVRSHLGISPYQCNICDYIAADKAALIRHLRTHSGERPYICKICHYPFTVKANCERHLRKKHLKATRKDIEKNIEYVSSNAAEMVDAFCSPGTVCQVCGEDLKHYRALRIHMRTHSGGSQKGHKPFKCKECSTAFSAKRSCVHHILKQHLHVPECEIENYVLAVDYRGGRYQKGPLPESSSSLSSSSTSSSSSSSSSTSFLSLLNKGSGKGTCGVHKPLAAILEPQNGFLWGGAPSPHISIKLEPASNSLSDFSEPLDFSQKSKDPSLVKVKQENPSILSPSSLAPYDCLVEPIDLSIPKGFRRDIDGPLALGKAWKPDLGPGGSDPPYGCQPPCPNPSVIFGSRRSLEKPAATTTTVPVLQHLPQLLKGPLHLTMPIVSPSFLSNAALLRPLRPKPPPLLPKPSVAKELPPLASIAQIISSVSLAPALLKAEVVDTGFNLASCSLRLEKPGATKPKGDSATATILKEPGDPPLPRDSPGADSPELGLASSFKKWCHKKVTKNQARVIGSGVDLESSGEFASIENMLATTDTNKFSPFLQPADEHVTEEGATLAAADWNRMSSDNQDGPVDKQQQRGQQNPYTNCLQKVICPFCPRVFSWTSSLQRHVLTHTDSQSDIEMPATGIEILDLTSREKQPETVAVLSHEEEDCPADGQDKQQADSPDEEGMSNEEEEEEEDEEEDEEEKKGEGEEEEEAEEGLEEKDEDDSISSKSLDLNFASKLMDFKLTDSDQSLGANGVSSQNEKKYACDICRKSVKFTASMSRHKKSHTREHRRNEKTSEDESRSGPEGNSDTPFGDIDPEQEERLVNLKVVESPVVGKAPTGKENEESESGSEGENMLERKSSGKSDNDKKPKTNGAKSISKADKRKKVCTVCNKRFWSLQDLTRHMRSHTGERPYKCQTCERTFTLKHSLVRHQRIHQKVKNTKHQSKRRAKKERSECNSENESAHSSANPISENEGDLNLALSSHLAITQSQRESLTRAVKDLAHKEESAGEGLAGVGLPEPSKNAQQSALGGSIQEQESQGNTDGRSPSVFIQDLLGGHGKVMPVNHIFASTDSASQLVGME
SIO_010081: LOC114808660
subclass of: SO_0000673
so part of: LOC114808660
location: join(2533619..2533717,2541514..2541603,2545002..2545165,2569733..2569874,2571820..2571956,2590373..2590562,2598379..2601295,2630674..2631516,2635537..2636060)
location: region:2533619-2636060:1
so has part: feature:2533619-2533717:1:exon
so has part: feature:2541514-2541603:1:exon
so has part: feature:2545002-2545165:1:exon
so has part: feature:2569733-2569874:1:exon
so has part: feature:2571820-2571956:1:exon
so has part: feature:2590373-2590562:1:exon
so has part: feature:2598379-2601295:1:exon
so has part: feature:2630674-2631516:1:exon
so has part: feature:2635537-2636060:1:exon

XP_039766905.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2533619-2533717:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2541514-2541603:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2545002-2545165:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2569733-2569874:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2571820-2571956:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2590373-2590562:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2598379-2601295:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2630674-2631516:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2635537-2636060:1:exon

LOC114808660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808660
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ras-responsive element-binding protein 1 isoform X2
translation: MHIRQHNTHTGGAEHSCSICRKTLSSASSLDRHMLVHSGERPYKCSVCGQSFTTNGNMHRHMKIHEKNPNSTANTVTSSPLKRRRLTSKRKLSQEAEAEKELTPAKKVVGNSPSGETEKRTDEVFHCPVCFKEFVCKYGLETHMESHPDNSLRCDICCISFRTHRGLLRHNAVIHRQFPRDPKGKPFIQNNPSIPAGFHDLGFIDFSCRKFPHISQVWCETNLRRCISECHHFICQTCNKAFPMLSALTLHTYTHVGDQGNDKYELQPNHTVGESPDQNVFMASLGLRSTKDIQPTRQESSTSDVLHGVCLETQMSHLHQEPGSPALLSTSALDPSGLGSSLGVLPPTKEALKPLSLQPFQKGFIIQPDSSTVVKPISSESAIELADIQQILKMACSVPPQISLPPLSKAPSMPMQSIFKHMPPLKPKPLVTPRMVVATSTPPPLISAQQASLGCINPSLLPPPVRLIKNTVEAASTSLLQSQVGAQPHAAVQVFFQRNTEAPRQPEVKTQLEQDRITEALLPLNMEAKIKQEVMEGDLKAIIAGAASKKTQAMRKVLYPCRFCDQVFTFSGVLRAHVRSHLGISPYQCNICDYIAADKAALIRHLRTHSGERPYICKICHYPFTVKANCERHLRKKHLKATRKDIEKNIEYVSSNAAEMVDAFCSPGTVCQVCGEDLKHYRALRIHMRTHSGGSQKGHKPFKCKECSTAFSAKRSCVHHILKQHLHVPECEIENYVLAVDYRGGRYQKGPLPESSSSLSSSSTSSSSSSSSSTSFLSLLNKGSGKGTCGVHKPLAAILEPQNGFLWGGAPSPHISIKLEPASNSLSDFSEPLDFSQKSKDPSLVKVKQENPSILSPSSLAPYDCLVEPIDLSIPKGFRRDIDGPLALGKAWKPDLGPGGSDPPYGCQPPCPNPSVIFGSRRSLEKPAATTTTVPVLQHLPQLLKGPLHLTMPIVSPSFLSNAALLRPLRPKPPPLLPKPSVAKELPPLASIAQIISSVSLAPALLKAEVVDTGFNLASCSLRLEKPGATKPKGDSATATILKEPGDPPLPRDSPGADSPELGLASSFKKWCHKKVTKNQARVIGSGVDLESSGEFASIENMLATTDTNKFSPFLQPADEHVTEEGATLAAADWNRMSSDNQDGPVDKQQQRGQQNPYTNCLQKVICPFCPRVFSWTSSLQRHVLTHTDSQSDIEMPATGIEILDLTSREKQPETVAVLSHEEEDCPADGQDKQQADSPDEEGMSNEEEEEEEDEEEDEEEKKGEGEEEEEAEEGLEEKDEDDSISSKSLDLNFASKLMDFKLTDSDQSLGANGVSSQNEKKYACDICRKSVKFTASMSRHKKSHTREHRRNEKTSEDESRSGPEGNSDTPFGDIDPEQEERLVNLKVVESPVVGKAPTGKENEESESGSEGENMLERKSSGKSDNDKKPKTNGAKSISKADKRKKVCTVCNKRFWSLQDLTRHMRSHTGERPYKCQTCERTFTLKHSLVRHQRIHQKVKNTKHQSKRRAKKERSECNSENESAHSSANPISENEGDLNLALSSHLAITQSQRESLTRAVKDLAHKEESAGEGLAGVGLPEPSKNAQQSALGGSIQEQESQGNTDGRSPSVFIQDLLGGHGKVMPVNHIFASTDSASQLVGME
SIO_010081: LOC114808660
subclass of: SO_0000673
so part of: LOC114808660
location: join(2541589..2541603,2545002..2545165,2569733..2569874,2571820..2571956,2590373..2590562,2598379..2601295,2630674..2631516,2635537..2636060)
location: region:2541589-2636060:1
so has part: feature:2541589-2541603:1:exon
so has part: feature:2545002-2545165:1:exon
so has part: feature:2569733-2569874:1:exon
so has part: feature:2571820-2571956:1:exon
so has part: feature:2590373-2590562:1:exon
so has part: feature:2598379-2601295:1:exon
so has part: feature:2630674-2631516:1:exon
so has part: feature:2635537-2636060:1:exon

XP_039766906.1
type: Protein
SIO_000068: ncbiprotein

position:2541589:1
position: 2541589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2541589-2541603:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2545002-2545165:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2569733-2569874:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2571820-2571956:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2590373-2590562:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2598379-2601295:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2630674-2631516:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2635537-2636060:1:exon

LOC114808661
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808661
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2649984..2686495)
location: region:2649984-2686495:-1
so has part: feature:2649984-2686495:-1:exon
subclass of: SO_0000010

114808661
type: Gene
SIO_000068: ncbigene

position:2649984:-1
position: 2649984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2686495:-1
position: 2686495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2649984-2686495:-1:exon

LOC114808661
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808661
product: translocon-associated protein subunit alpha, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_039910973.1
SIO_010081: LOC114808661
subclass of: SO_0000673
so part of: LOC114808661
location: complement(join(2649984..2652101,2657370..2657460,2658577..2658655,2659053..2659129,2661199..2661461,2661800..2661887,2669872..2669981,2686304..2686495))
location: region:2649984-2686495:-1
so has part: feature:2686304-2686495:-1:exon
so has part: feature:2669872-2669981:-1:exon
so has part: feature:2661800-2661887:-1:exon
so has part: feature:2661199-2661461:-1:exon
so has part: feature:2659053-2659129:-1:exon
so has part: feature:2658577-2658655:-1:exon
so has part: feature:2657370-2657460:-1:exon
so has part: feature:2649984-2652101:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2686304-2686495:-1:exon

position:2686304:-1
position: 2686304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2669872-2669981:-1:exon

position:2669872:-1
position: 2669872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2669981:-1
position: 2669981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2661800-2661887:-1:exon

position:2661800:-1
position: 2661800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2661887:-1
position: 2661887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2661199-2661461:-1:exon

position:2661199:-1
position: 2661199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2661461:-1
position: 2661461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2659053-2659129:-1:exon

position:2659053:-1
position: 2659053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2659129:-1
position: 2659129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2658577-2658655:-1:exon

position:2658577:-1
position: 2658577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2658655:-1
position: 2658655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2657370-2657460:-1:exon

position:2657370:-1
position: 2657370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2657460:-1
position: 2657460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2649984-2652101:-1:exon

position:2652101:-1
position: 2652101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808661
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808661
product: translocon-associated protein subunit alpha, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_029056448.1
SIO_010081: LOC114808661
subclass of: SO_0000673
so part of: LOC114808661
location: complement(join(2649984..2652101,2656859..2656873,2657370..2657460,2658577..2658655,2659053..2659129,2661199..2661461,2661800..2661887,2669872..2669981,2686304..2686495))
location: region:2649984-2686495:-1
so has part: feature:2686304-2686495:-1:exon
so has part: feature:2669872-2669981:-1:exon
so has part: feature:2661800-2661887:-1:exon
so has part: feature:2661199-2661461:-1:exon
so has part: feature:2659053-2659129:-1:exon
so has part: feature:2658577-2658655:-1:exon
so has part: feature:2657370-2657460:-1:exon
so has part: feature:2656859-2656873:-1:exon
so has part: feature:2649984-2652101:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2686304-2686495:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2669872-2669981:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2661800-2661887:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2661199-2661461:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2659053-2659129:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2658577-2658655:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2657370-2657460:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2656859-2656873:-1:exon

position:2656859:-1
position: 2656859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2656873:-1
position: 2656873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2649984-2652101:-1:exon

LOC114808661
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808661
product: translocon-associated protein subunit alpha, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_029056449.1
SIO_010081: LOC114808661
subclass of: SO_0000673
so part of: LOC114808661
location: complement(join(2649984..2652101,2657370..2657463,2658577..2658655,2659053..2659129,2661199..2661461,2661800..2661887,2669872..2669981,2686304..2686495))
location: region:2649984-2686495:-1
so has part: feature:2686304-2686495:-1:exon
so has part: feature:2669872-2669981:-1:exon
so has part: feature:2661800-2661887:-1:exon
so has part: feature:2661199-2661461:-1:exon
so has part: feature:2659053-2659129:-1:exon
so has part: feature:2658577-2658655:-1:exon
so has part: feature:2657370-2657463:-1:exon
so has part: feature:2649984-2652101:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2686304-2686495:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2669872-2669981:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2661800-2661887:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2661199-2661461:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2659053-2659129:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2658577-2658655:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2657370-2657463:-1:exon

position:2657463:-1
position: 2657463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2649984-2652101:-1:exon

LOC114808661
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808661
product: translocon-associated protein subunit alpha, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_029056447.1
SIO_010081: LOC114808661
subclass of: SO_0000673
so part of: LOC114808661
location: complement(join(2649984..2652101,2656859..2656873,2657370..2657463,2658577..2658655,2659053..2659129,2661199..2661461,2661800..2661887,2669872..2669981,2686304..2686495))
location: region:2649984-2686495:-1
so has part: feature:2686304-2686495:-1:exon
so has part: feature:2669872-2669981:-1:exon
so has part: feature:2661800-2661887:-1:exon
so has part: feature:2661199-2661461:-1:exon
so has part: feature:2659053-2659129:-1:exon
so has part: feature:2658577-2658655:-1:exon
so has part: feature:2657370-2657463:-1:exon
so has part: feature:2656859-2656873:-1:exon
so has part: feature:2649984-2652101:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2686304-2686495:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2669872-2669981:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2661800-2661887:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2661199-2661461:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2659053-2659129:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2658577-2658655:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2657370-2657463:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2656859-2656873:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2649984-2652101:-1:exon

LOC114808661
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808661
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: translocon-associated protein subunit alpha isoform X4
translation: MRFLPRLLLLALLVLPATLLLGGGVGGTLVLAQDSTEDEETVEDTVVEDEDDEAEIEDEPTDLAEDKEEEDLFGEAKASSNADTTILFVKGEDFPANNIVKFLVGFTNKGLEDFVIESLDASFRYPQDYQFFIQNFTALPLNTVVPPQKQATFEYSFIPAEPMGGRPFGLVINLNYKDVNGNVFQDAVFNQTVTITEKEDSLDGEMIFMYVFLVGLGLLIIVSLHQLLESRKKRPVQQVEMGSANQNDVDMSWIPQETLNQINKASPRRLPRKRVQKRTVGSDE
SIO_010081: LOC114808661
subclass of: SO_0000673
so part of: LOC114808661
location: complement(join(2652034..2652101,2657370..2657460,2658577..2658655,2659053..2659129,2661199..2661461,2661800..2661887,2669872..2669981,2686304..2686382))
location: region:2652034-2686382:-1
so has part: feature:2686304-2686382:-1:exon
so has part: feature:2669872-2669981:-1:exon
so has part: feature:2661800-2661887:-1:exon
so has part: feature:2661199-2661461:-1:exon
so has part: feature:2659053-2659129:-1:exon
so has part: feature:2658577-2658655:-1:exon
so has part: feature:2657370-2657460:-1:exon
so has part: feature:2652034-2652101:-1:exon

XP_039766907.1
type: Protein
SIO_000068: ncbiprotein

position:2652034:-1
position: 2652034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2686382:-1
position: 2686382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2686304-2686382:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2669872-2669981:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2661800-2661887:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2661199-2661461:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2659053-2659129:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2658577-2658655:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2657370-2657460:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2652034-2652101:-1:exon

LOC114808661
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808661
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: translocon-associated protein subunit alpha isoform X2
translation: MRFLPRLLLLALLVLPATLLLGGGVGGTLVLAQDSTEDEETVEDTVVEDEDDEAEIEDEPTDLAEDKEEEDLFGEAKASSNADTTILFVKGEDFPANNIVKFLVGFTNKGLEDFVIESLDASFRYPQDYQFFIQNFTALPLNTVVPPQKQATFEYSFIPAEPMGGRPFGLVINLNYKDVNGNVFQDAVFNQTVTITEKEDSLDGEMIFMYVFLVGLGLLIIVSLHQLLESRKKRPVQQVEMGSANQNDVDMSWIPQETLNQIMHSRRDKASPRRLPRKRVQKRTVGSDE
SIO_010081: LOC114808661
subclass of: SO_0000673
so part of: LOC114808661
location: complement(join(2652034..2652101,2656859..2656873,2657370..2657460,2658577..2658655,2659053..2659129,2661199..2661461,2661800..2661887,2669872..2669981,2686304..2686382))
location: region:2652034-2686382:-1
so has part: feature:2686304-2686382:-1:exon
so has part: feature:2669872-2669981:-1:exon
so has part: feature:2661800-2661887:-1:exon
so has part: feature:2661199-2661461:-1:exon
so has part: feature:2659053-2659129:-1:exon
so has part: feature:2658577-2658655:-1:exon
so has part: feature:2657370-2657460:-1:exon
so has part: feature:2656859-2656873:-1:exon
so has part: feature:2652034-2652101:-1:exon

XP_028912281.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2686304-2686382:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2669872-2669981:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2661800-2661887:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2661199-2661461:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2659053-2659129:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2658577-2658655:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2657370-2657460:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2656859-2656873:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2652034-2652101:-1:exon

LOC114808661
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808661
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: translocon-associated protein subunit alpha isoform X3
translation: MRFLPRLLLLALLVLPATLLLGGGVGGTLVLAQDSTEDEETVEDTVVEDEDDEAEIEDEPTDLAEDKEEEDLFGEAKASSNADTTILFVKGEDFPANNIVKFLVGFTNKGLEDFVIESLDASFRYPQDYQFFIQNFTALPLNTVVPPQKQATFEYSFIPAEPMGGRPFGLVINLNYKDVNGNVFQDAVFNQTVTITEKEDSLDGEMIFMYVFLVGLGLLIIVSLHQLLESRKKKRPVQQVEMGSANQNDVDMSWIPQETLNQINKASPRRLPRKRVQKRTVGSDE
SIO_010081: LOC114808661
subclass of: SO_0000673
so part of: LOC114808661
location: complement(join(2652034..2652101,2657370..2657463,2658577..2658655,2659053..2659129,2661199..2661461,2661800..2661887,2669872..2669981,2686304..2686382))
location: region:2652034-2686382:-1
so has part: feature:2686304-2686382:-1:exon
so has part: feature:2669872-2669981:-1:exon
so has part: feature:2661800-2661887:-1:exon
so has part: feature:2661199-2661461:-1:exon
so has part: feature:2659053-2659129:-1:exon
so has part: feature:2658577-2658655:-1:exon
so has part: feature:2657370-2657463:-1:exon
so has part: feature:2652034-2652101:-1:exon

XP_028912282.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2686304-2686382:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2669872-2669981:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2661800-2661887:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2661199-2661461:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2659053-2659129:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2658577-2658655:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2657370-2657463:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2652034-2652101:-1:exon

LOC114808661
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808661
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: translocon-associated protein subunit alpha isoform X1
translation: MRFLPRLLLLALLVLPATLLLGGGVGGTLVLAQDSTEDEETVEDTVVEDEDDEAEIEDEPTDLAEDKEEEDLFGEAKASSNADTTILFVKGEDFPANNIVKFLVGFTNKGLEDFVIESLDASFRYPQDYQFFIQNFTALPLNTVVPPQKQATFEYSFIPAEPMGGRPFGLVINLNYKDVNGNVFQDAVFNQTVTITEKEDSLDGEMIFMYVFLVGLGLLIIVSLHQLLESRKKKRPVQQVEMGSANQNDVDMSWIPQETLNQIMHSRRDKASPRRLPRKRVQKRTVGSDE
SIO_010081: LOC114808661
subclass of: SO_0000673
so part of: LOC114808661
location: complement(join(2652034..2652101,2656859..2656873,2657370..2657463,2658577..2658655,2659053..2659129,2661199..2661461,2661800..2661887,2669872..2669981,2686304..2686382))
location: region:2652034-2686382:-1
so has part: feature:2686304-2686382:-1:exon
so has part: feature:2669872-2669981:-1:exon
so has part: feature:2661800-2661887:-1:exon
so has part: feature:2661199-2661461:-1:exon
so has part: feature:2659053-2659129:-1:exon
so has part: feature:2658577-2658655:-1:exon
so has part: feature:2657370-2657463:-1:exon
so has part: feature:2656859-2656873:-1:exon
so has part: feature:2652034-2652101:-1:exon

XP_028912280.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2686304-2686382:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2669872-2669981:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2661800-2661887:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2661199-2661461:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2659053-2659129:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2658577-2658655:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2657370-2657463:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2656859-2656873:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2652034-2652101:-1:exon

LOC114808667
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808667
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2723898..2730711)
location: region:2723898-2730711:-1
so has part: feature:2723898-2730711:-1:exon
subclass of: SO_0000010

114808667
type: Gene
SIO_000068: ncbigene

position:2723898:-1
position: 2723898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2730711:-1
position: 2730711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2723898-2730711:-1:exon

LOC114808667
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808667
product: equatorin-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 97% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_029056456.2
SIO_010081: LOC114808667
subclass of: SO_0000673
so part of: LOC114808667
location: complement(join(2723898..2724069,2728605..2728758,2730600..2730711))
location: region:2723898-2730711:-1
so has part: feature:2730600-2730711:-1:exon
so has part: feature:2728605-2728758:-1:exon
so has part: feature:2723898-2724069:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2730600-2730711:-1:exon

position:2730600:-1
position: 2730600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2728605-2728758:-1:exon

position:2728605:-1
position: 2728605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2728758:-1
position: 2728758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2723898-2724069:-1:exon

position:2724069:-1
position: 2724069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808667
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808667
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: equatorin-like
translation: MPIVSILTDLKESSKELEERISEGKISHRSAVYRARPSSDLHSEIDSATAKQEDYKLKLLLILTLMIFMFFLFLASVCLGLFCRLKKMAVPNDTSDQLQGVRPDLAHLSYFKPLKGVSDTSFSRTNSSEWSDPSVLMLQK
SIO_010081: LOC114808667
subclass of: SO_0000673
so part of: LOC114808667
location: complement(join(2723913..2724069,2728605..2728758,2730600..2730711))
location: region:2723913-2730711:-1
so has part: feature:2730600-2730711:-1:exon
so has part: feature:2728605-2728758:-1:exon
so has part: feature:2723913-2724069:-1:exon

XP_028912289.1
type: Protein
SIO_000068: ncbiprotein

position:2723913:-1
position: 2723913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2730600-2730711:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2728605-2728758:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2723913-2724069:-1:exon

LOC114808662
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808662
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2733131..2742244
location: region:2733131-2742244:1
so has part: feature:2733131-2742244:1:exon
subclass of: SO_0000010

114808662
type: Gene
SIO_000068: ncbigene

position:2733131:1
position: 2733131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2742244:1
position: 2742244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2733131-2742244:1:exon

LOC114808662
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808662
product: equatorin-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_029056451.1
SIO_010081: LOC114808662
subclass of: SO_0000673
so part of: LOC114808662
location: join(2733131..2733323,2735455..2735541,2737382..2737535,2742072..2742244)
location: region:2733131-2742244:1
so has part: feature:2733131-2733323:1:exon
so has part: feature:2735455-2735541:1:exon
so has part: feature:2737382-2737535:1:exon
so has part: feature:2742072-2742244:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2733131-2733323:1:exon

position:2733323:1
position: 2733323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2735455-2735541:1:exon

position:2735455:1
position: 2735455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2735541:1
position: 2735541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2737382-2737535:1:exon

position:2737382:1
position: 2737382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2737535:1
position: 2737535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2742072-2742244:1:exon

position:2742072:1
position: 2742072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114808662
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808662
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: equatorin-like
translation: MNLPSLTYIFLFILLGITERTTTLKDLKESSKELEERISEGKISHRSAVYRARPSSDLHSEIDSATAKQEDYKLKLLLILTLMIFMFFLFLASVCLGLFCRLKKMAVPNDTSDQLQGVRPDLAHLSYFKPLKGVSDTSFSPNK
SIO_010081: LOC114808662
subclass of: SO_0000673
so part of: LOC114808662
location: join(2733248..2733323,2735455..2735541,2737382..2737535,2742072..2742186)
location: region:2733248-2742186:1
so has part: feature:2733248-2733323:1:exon
so has part: feature:2735455-2735541:1:exon
so has part: feature:2737382-2737535:1:exon
so has part: feature:2742072-2742186:1:exon

XP_028912284.1
type: Protein
SIO_000068: ncbiprotein

position:2733248:1
position: 2733248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2742186:1
position: 2742186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2733248-2733323:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2735455-2735541:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2737382-2737535:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2742072-2742186:1:exon

LOC120638182
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC120638182
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3854764..3938928)
location: region:3854764-3938928:-1
so has part: feature:3854764-3938928:-1:exon
subclass of: SO_0000011

120638182
type: Gene
SIO_000068: ncbigene

position:3854764:-1
position: 3854764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3938928:-1
position: 3938928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3854764-3938928:-1:exon

LOC120638182
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9258
nc RNA class: lncRNA
gene: LOC120638182
product: uncharacterized LOC120638182
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_005659697.1
SIO_010081: LOC120638182
subclass of: SO_0000673
so part of: LOC120638182
location: complement(join(3854764..3854868,3938765..3938928))
location: region:3854764-3938928:-1
so has part: feature:3938765-3938928:-1:exon
so has part: feature:3854764-3854868:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3938765-3938928:-1:exon

position:3938765:-1
position: 3938765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3854764-3854868:-1:exon

position:3854868:-1
position: 3854868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition