Ornithorhynchus anatinus isolate Pmale09 chromosome Y1, mOrnAna1.pri.v4, whole genome shotgun sequence.
type: Entry
definition: Ornithorhynchus anatinus isolate Pmale09 chromosome Y1, mOrnAna1.pri.v4, whole genome shotgun sequence.
sequence version: NC_053175.1
sequence date: 2021-03-08
sequence: sequence
division: CON
label: NC_053175.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA534073
dblink: SAMN08537700
keyword: WGS
keyword: RefSeq
source: Ornithorhynchus anatinus (platypus)
organism: Ornithorhynchus anatinus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM022557.1.\nAssembly name: mOrnAna1.pri.v4\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2020/11/06. The original whole-genome shotgun project has the\naccession RZJT00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 06-DEC-2019\nAssembly Method :: FALCON v. 5.1.1; FALCON Unzip v. 1.0.2;\n purge_haplotigs v. bit 7.10.2018;\n scaff10X v. git 4.28.2018; Bionano Solve\n DLS v. 3.2.1; Salsa2 HiC v. 2.0;\n smrtanalysis Arrow polishing & gap\n fillingt v. 5.1.0.26412; longranger align\n v. 2.2.2; freebayes v. 1.2.0; gEVAL\n manual curation v. 2019-12-06\nAssembly Name :: mOrnAna1.pri.v4\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 58.8x\nSequencing Technology :: PacBio RSII; 10X Genomics linked reads;\n Bionano Genomics DLS; Dovetail Genomics\n HiC; Arima Genomics\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Ornithorhynchus anatinus Annotation\n Release 105\nAnnotation Version :: 105\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.6\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 1234000
topology: linear
so has quality: SO_0000987
location: 1..1234000
location: region:1-1234000:1
RO_0002162: 9258

NC_053175
type: RefSeq
SIO_000068: refseq

PRJNA534073
type: BioProject
SIO_000068: bioproject

SAMN08537700
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1234000:1
position: 1234000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-1234000:1:source
so part of: sequence
organism: Ornithorhynchus anatinus
mol type: genomic DNA
isolate: Pmale09
chromosome: Y1
sex: male
tissue type: liver; muscle

9258
type: Taxonomy
SIO_000068: taxonomy

LOC114805390
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114805390
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 43693..47639
location: region:43693-47639:1
so has part: feature:43693-47639:1:exon
subclass of: SO_0000010

114805390
type: Gene
SIO_000068: ncbigene

position:43693:1
position: 43693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47639:1
position: 47639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43693-47639:1:exon

LOC114805390
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114805390
product: pterin-4-alpha-carbinolamine dehydratase 2-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_029056439.2
SIO_010081: LOC114805390
subclass of: SO_0000673
so part of: LOC114805390
location: join(43693..43897,46071..46151,47380..47639)
location: region:43693-47639:1
so has part: feature:43693-43897:1:exon
so has part: feature:46071-46151:1:exon
so has part: feature:47380-47639:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:43693-43897:1:exon

position:43897:1
position: 43897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:46071-46151:1:exon

position:46071:1
position: 46071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46151:1
position: 46151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:47380-47639:1:exon

position:47380:1
position: 47380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114805390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114805390
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pterin-4-alpha-carbinolamine dehydratase 2-like
translation: MERKRTLPCLHPLLQDPEAFGFMSRVALQAEKMNHHPEWFNVYNKVQITLTSHDCGGLTKRDIKLAQFIEKAAGSV
SIO_010081: LOC114805390
subclass of: SO_0000673
so part of: LOC114805390
location: join(43844..43897,46071..46151,47380..47475)
location: region:43844-47475:1
so has part: feature:43844-43897:1:exon
so has part: feature:46071-46151:1:exon
so has part: feature:47380-47475:1:exon

XP_028912272.1
type: Protein
SIO_000068: ncbiprotein

position:43844:1
position: 43844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47475:1
position: 47475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43844-43897:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:46071-46151:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:47380-47475:1:exon

LOC114808653
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808653
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 65830..79198
location: region:65830-79198:1
so has part: feature:65830-79198:1:exon
subclass of: SO_0000010

114808653
type: Gene
SIO_000068: ncbigene

position:65830:1
position: 65830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:79198:1
position: 79198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65830-79198:1:exon

LOC114808653
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808653
product: cation channel sperm-associated protein 3-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_039910962.1
SIO_010081: LOC114808653
subclass of: SO_0000673
so part of: LOC114808653
location: join(65830..66175,79111..79198)
location: region:65830-79198:1
so has part: feature:65830-66175:1:exon
so has part: feature:79111-79198:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:65830-66175:1:exon

position:66175:1
position: 66175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:79111-79198:1:exon

position:79111:1
position: 79111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114808653
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808653
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cation channel sperm-associated protein 3-like
translation: MAPFPPTSYWCDGSHRLQVTTDFFLFQFSETVFMAIYFAEFFLKIFVAPLKYWKNLYNMLDFCVLFIACIPCCLTKLKHGYLYASIASGVQSLRILKLISYCRGMMP
SIO_010081: LOC114808653
subclass of: SO_0000673
so part of: LOC114808653
location: join(65858..66175,79111..79116)
location: region:65858-79116:1
so has part: feature:65858-66175:1:exon
so has part: feature:79111-79116:1:exon

XP_039766896.1
type: Protein
SIO_000068: ncbiprotein

position:65858:1
position: 65858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:79116:1
position: 79116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65858-66175:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:79111-79116:1:exon

LOC120638006
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC120638006
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <79117..90194
location: region:79117-90194:1
so has part: feature:79117-90194:1:exon
subclass of: SO_0000010

120638006
type: Gene
SIO_000068: ncbigene

position:79117:1
position: 79117
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:90194:1
position: 90194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79117-90194:1:exon

LOC120638006
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC120638006
product: cation channel sperm-associated protein 3-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_039910961.1
SIO_010081: LOC120638006
subclass of: SO_0000673
so part of: LOC120638006
location: join(<79117..79212,80664..80846,83415..83554,85635..85754,89745..90194)
location: region:79117-90194:1
so has part: feature:79117-79212:1:exon
so has part: feature:80664-80846:1:exon
so has part: feature:83415-83554:1:exon
so has part: feature:85635-85754:1:exon
so has part: feature:89745-90194:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:79117-79212:1:exon

position:79212:1
position: 79212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:80664-80846:1:exon

position:80664:1
position: 80664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80846:1
position: 80846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:83415-83554:1:exon

position:83415:1
position: 83415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:83554:1
position: 83554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:85635-85754:1:exon

position:85635:1
position: 85635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:85754:1
position: 85754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:89745-90194:1:exon

position:89745:1
position: 89745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC120638006
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC120638006
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cation channel sperm-associated protein 3-like
translation: GGERDGLAVFREETWRKHQQGVRASRDEHDAETLLKALWRTVNMVASVLALLFLLMFIFAILDHSLFGNQDKGDTQNWGNLASAFFKLFSLATVDGWTFLQNELNVCKFSISGAFTITFILLAFFLFLSMFFGMMIIHTRT
SIO_010081: LOC120638006
subclass of: SO_0000673
so part of: LOC120638006
location: join(<79117..79212,80664..80846,83415..83554,85635..85641)
location: region:79117-85641:1
so has part: feature:79117-79212:1:exon
so has part: feature:80664-80846:1:exon
so has part: feature:83415-83554:1:exon
so has part: feature:85635-85641:1:exon

XP_039766895.1
type: Protein
SIO_000068: ncbiprotein

position:85641:1
position: 85641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79117-79212:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:80664-80846:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:83415-83554:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:85635-85641:1:exon

LOC114808651
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808651
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(144252..153847)
location: region:144252-153847:-1
so has part: feature:144252-153847:-1:exon
subclass of: SO_0000010

114808651
type: Gene
SIO_000068: ncbigene

position:144252:-1
position: 144252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:153847:-1
position: 153847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:144252-153847:-1:exon

LOC114808651
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808651
product: pituitary homeobox 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_029056437.1
SIO_010081: LOC114808651
subclass of: SO_0000673
so part of: LOC114808651
location: complement(join(144252..144933,149755..149960,153652..153847))
location: region:144252-153847:-1
so has part: feature:153652-153847:-1:exon
so has part: feature:149755-149960:-1:exon
so has part: feature:144252-144933:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:153652-153847:-1:exon

position:153652:-1
position: 153652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:149755-149960:-1:exon

position:149755:-1
position: 149755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:149960:-1
position: 149960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:144252-144933:-1:exon

position:144933:-1
position: 144933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808651
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808651
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pituitary homeobox 1-like
translation: MDSFKGGMNLDRLPEGLRPPPPPPPPPPPPPSHDMASGFHLPRSAADPREPLENSASESSDTETPEKERSGEAKSEEGGAEDPAKKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTEPRVRVWFKNRRAKWRKRERNQQMDLCKNGYVPQFSGLMPPYEDVYAGYPYNNWAAKSLTPAPLSTKSFTFFNSMTPLSSQSMFPAPSSISSMSMPTGMGHSAVPGMANSGLNNINNLNNLSGSSLNSAMSSPACPYGPPGSPYSVYRDTCNSSLASLRLKSKQHSSFGYSSLQSHGSGLNACQYNS
SIO_010081: LOC114808651
subclass of: SO_0000673
so part of: LOC114808651
location: complement(join(144385..144933,149755..149960,153652..153847))
location: region:144385-153847:-1
so has part: feature:153652-153847:-1:exon
so has part: feature:149755-149960:-1:exon
so has part: feature:144385-144933:-1:exon

XP_028912270.1
type: Protein
SIO_000068: ncbiprotein

position:144385:-1
position: 144385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:153652-153847:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:149755-149960:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:144385-144933:-1:exon

LOC114808656
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808656
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 196989..197126
location: region:196989-197126:1
so has part: feature:196989-197126:1:exon
subclass of: SO_0000578

114808656
type: Gene
SIO_000068: ncbigene

position:196989:1
position: 196989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:197126:1
position: 197126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:196989-197126:1:exon

LOC114808656
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9258
nc RNA class: snoRNA
gene: LOC114808656
product: small nucleolar RNA SNORA7
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00409
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003756484.1
SIO_010081: LOC114808656
subclass of: SO_0000673
so part of: LOC114808656
location: 196989..197126
location: region:196989-197126:1
so has part: feature:196989-197126:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:196989-197126:1:exon

LOC114808650
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808650
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(677062..781138)
location: region:677062-781138:-1
so has part: feature:677062-781138:-1:exon
subclass of: SO_0000010

114808650
type: Gene
SIO_000068: ncbigene

position:677062:-1
position: 677062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:781138:-1
position: 781138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:677062-781138:-1:exon

LOC114808650
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808650
product: core histone macro-H2A.1-like, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_029056436.2
SIO_010081: LOC114808650
subclass of: SO_0000673
so part of: LOC114808650
location: complement(join(677062..677833,689698..689872,695431..695520,701965..702064,718612..718809,720074..720180,758061..758261,781068..781138))
location: region:677062-781138:-1
so has part: feature:781068-781138:-1:exon
so has part: feature:758061-758261:-1:exon
so has part: feature:720074-720180:-1:exon
so has part: feature:718612-718809:-1:exon
so has part: feature:701965-702064:-1:exon
so has part: feature:695431-695520:-1:exon
so has part: feature:689698-689872:-1:exon
so has part: feature:677062-677833:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:781068-781138:-1:exon

position:781068:-1
position: 781068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:758061-758261:-1:exon

position:758061:-1
position: 758061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:758261:-1
position: 758261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:720074-720180:-1:exon

position:720074:-1
position: 720074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:720180:-1
position: 720180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:718612-718809:-1:exon

position:718612:-1
position: 718612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:718809:-1
position: 718809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:701965-702064:-1:exon

position:701965:-1
position: 701965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:702064:-1
position: 702064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:695431-695520:-1:exon

position:695431:-1
position: 695431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:695520:-1
position: 695520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:689698-689872:-1:exon

position:689698:-1
position: 689698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:689872:-1
position: 689872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:677062-677833:-1:exon

position:677833:-1
position: 677833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808650
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808650
product: core histone macro-H2A.1-like, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_029056435.2
SIO_010081: LOC114808650
subclass of: SO_0000673
so part of: LOC114808650
location: complement(join(677062..677833,689698..689872,695431..695520,700181..700271,713940..714047,718612..718809,720074..720180,758061..758261,781068..781138))
location: region:677062-781138:-1
so has part: feature:781068-781138:-1:exon
so has part: feature:758061-758261:-1:exon
so has part: feature:720074-720180:-1:exon
so has part: feature:718612-718809:-1:exon
so has part: feature:713940-714047:-1:exon
so has part: feature:700181-700271:-1:exon
so has part: feature:695431-695520:-1:exon
so has part: feature:689698-689872:-1:exon
so has part: feature:677062-677833:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:781068-781138:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:758061-758261:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:720074-720180:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:718612-718809:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:713940-714047:-1:exon

position:713940:-1
position: 713940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:714047:-1
position: 714047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:700181-700271:-1:exon

position:700181:-1
position: 700181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:700271:-1
position: 700271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:695431-695520:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:689698-689872:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:677062-677833:-1:exon

LOC114808650
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808650
product: core histone macro-H2A.1-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_029056433.2
SIO_010081: LOC114808650
subclass of: SO_0000673
so part of: LOC114808650
location: complement(join(677062..677833,689698..689872,695431..695520,701965..702064,713940..714047,718612..718809,720074..720180,758061..758261,781068..781138))
location: region:677062-781138:-1
so has part: feature:781068-781138:-1:exon
so has part: feature:758061-758261:-1:exon
so has part: feature:720074-720180:-1:exon
so has part: feature:718612-718809:-1:exon
so has part: feature:713940-714047:-1:exon
so has part: feature:701965-702064:-1:exon
so has part: feature:695431-695520:-1:exon
so has part: feature:689698-689872:-1:exon
so has part: feature:677062-677833:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:781068-781138:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:758061-758261:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:720074-720180:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:718612-718809:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:713940-714047:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:701965-702064:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:695431-695520:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:689698-689872:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:677062-677833:-1:exon

LOC114808650
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808650
product: core histone macro-H2A.1-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_029056434.2
SIO_010081: LOC114808650
subclass of: SO_0000673
so part of: LOC114808650
location: complement(join(677062..677833,689698..689872,695431..695520,700181..700271,713940..714050,718612..718809,720074..720180,758061..758261,781068..781138))
location: region:677062-781138:-1
so has part: feature:781068-781138:-1:exon
so has part: feature:758061-758261:-1:exon
so has part: feature:720074-720180:-1:exon
so has part: feature:718612-718809:-1:exon
so has part: feature:713940-714050:-1:exon
so has part: feature:700181-700271:-1:exon
so has part: feature:695431-695520:-1:exon
so has part: feature:689698-689872:-1:exon
so has part: feature:677062-677833:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:781068-781138:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:758061-758261:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:720074-720180:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:718612-718809:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:713940-714050:-1:exon

position:714050:-1
position: 714050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:700181-700271:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:695431-695520:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:689698-689872:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:677062-677833:-1:exon

LOC114808650
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808650
product: core histone macro-H2A.1-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_029056432.2
SIO_010081: LOC114808650
subclass of: SO_0000673
so part of: LOC114808650
location: complement(join(677062..677833,689698..689872,695431..695520,701965..702064,713940..714050,718612..718809,720074..720180,758061..758261,781068..781138))
location: region:677062-781138:-1
so has part: feature:781068-781138:-1:exon
so has part: feature:758061-758261:-1:exon
so has part: feature:720074-720180:-1:exon
so has part: feature:718612-718809:-1:exon
so has part: feature:713940-714050:-1:exon
so has part: feature:701965-702064:-1:exon
so has part: feature:695431-695520:-1:exon
so has part: feature:689698-689872:-1:exon
so has part: feature:677062-677833:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:781068-781138:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:758061-758261:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:720074-720180:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:718612-718809:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:713940-714050:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:701965-702064:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:695431-695520:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:689698-689872:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:677062-677833:-1:exon

LOC114808650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808650
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: core histone macro-H2A.1-like isoform X5
translation: MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKRGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITAPPAKKAKSPPQKKPVSKKAGGKKGARKSKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGSTLEKKGGKEFVEAVIELRKKNGPLDVAEAAVSVGHGLPAKFVIHCNSPGWGSDKCEELLEKTVKNCLALADEKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN
SIO_010081: LOC114808650
subclass of: SO_0000673
so part of: LOC114808650
location: complement(join(677668..677833,689698..689872,695431..695520,701965..702064,718612..718809,720074..720180,758061..758232))
location: region:677668-758232:-1
so has part: feature:758061-758232:-1:exon
so has part: feature:720074-720180:-1:exon
so has part: feature:718612-718809:-1:exon
so has part: feature:701965-702064:-1:exon
so has part: feature:695431-695520:-1:exon
so has part: feature:689698-689872:-1:exon
so has part: feature:677668-677833:-1:exon

XP_028912269.1
type: Protein
SIO_000068: ncbiprotein

position:677668:-1
position: 677668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:758232:-1
position: 758232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:758061-758232:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:720074-720180:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:718612-718809:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:701965-702064:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:695431-695520:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:689698-689872:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:677668-677833:-1:exon

LOC114808650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808650
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: core histone macro-H2A.1-like isoform X4
translation: MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKRGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITAPPAKKAKSPPQKKPVSKKAGGKKGARKSKKQGEISKAASADSTTEGTPADGFTVLSTKSLFLGQKLQVVQADIAMINSDAVVHPTNSDFYTGGEVGSTLEKKGGKEFVEAVIELRKKNGPLDVAEAAVSVGHGLPAKFVIHCNSPGWGSDKCEELLEKTVKNCLALADEKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN
SIO_010081: LOC114808650
subclass of: SO_0000673
so part of: LOC114808650
location: complement(join(677668..677833,689698..689872,695431..695520,700181..700271,713940..714047,718612..718809,720074..720180,758061..758232))
location: region:677668-758232:-1
so has part: feature:758061-758232:-1:exon
so has part: feature:720074-720180:-1:exon
so has part: feature:718612-718809:-1:exon
so has part: feature:713940-714047:-1:exon
so has part: feature:700181-700271:-1:exon
so has part: feature:695431-695520:-1:exon
so has part: feature:689698-689872:-1:exon
so has part: feature:677668-677833:-1:exon

XP_028912268.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:758061-758232:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:720074-720180:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:718612-718809:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:713940-714047:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:700181-700271:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:695431-695520:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:689698-689872:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:677668-677833:-1:exon

LOC114808650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808650
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: core histone macro-H2A.1-like isoform X2
translation: MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKRGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITAPPAKKAKSPPQKKPVSKKAGGKKGARKSKKQGEISKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGSTLEKKGGKEFVEAVIELRKKNGPLDVAEAAVSVGHGLPAKFVIHCNSPGWGSDKCEELLEKTVKNCLALADEKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN
SIO_010081: LOC114808650
subclass of: SO_0000673
so part of: LOC114808650
location: complement(join(677668..677833,689698..689872,695431..695520,701965..702064,713940..714047,718612..718809,720074..720180,758061..758232))
location: region:677668-758232:-1
so has part: feature:758061-758232:-1:exon
so has part: feature:720074-720180:-1:exon
so has part: feature:718612-718809:-1:exon
so has part: feature:713940-714047:-1:exon
so has part: feature:701965-702064:-1:exon
so has part: feature:695431-695520:-1:exon
so has part: feature:689698-689872:-1:exon
so has part: feature:677668-677833:-1:exon

XP_028912266.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:758061-758232:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:720074-720180:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:718612-718809:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:713940-714047:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:701965-702064:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:695431-695520:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:689698-689872:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:677668-677833:-1:exon

LOC114808650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808650
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: core histone macro-H2A.1-like isoform X3
translation: MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKRGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITAPPAKKAKSPPQKKPVSKKAGGKKGARKSKKKQGEISKAASADSTTEGTPADGFTVLSTKSLFLGQKLQVVQADIAMINSDAVVHPTNSDFYTGGEVGSTLEKKGGKEFVEAVIELRKKNGPLDVAEAAVSVGHGLPAKFVIHCNSPGWGSDKCEELLEKTVKNCLALADEKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN
SIO_010081: LOC114808650
subclass of: SO_0000673
so part of: LOC114808650
location: complement(join(677668..677833,689698..689872,695431..695520,700181..700271,713940..714050,718612..718809,720074..720180,758061..758232))
location: region:677668-758232:-1
so has part: feature:758061-758232:-1:exon
so has part: feature:720074-720180:-1:exon
so has part: feature:718612-718809:-1:exon
so has part: feature:713940-714050:-1:exon
so has part: feature:700181-700271:-1:exon
so has part: feature:695431-695520:-1:exon
so has part: feature:689698-689872:-1:exon
so has part: feature:677668-677833:-1:exon

XP_028912267.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:758061-758232:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:720074-720180:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:718612-718809:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:713940-714050:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:700181-700271:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:695431-695520:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:689698-689872:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:677668-677833:-1:exon

LOC114808650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808650
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: core histone macro-H2A.1-like isoform X1
translation: MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKRGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITAPPAKKAKSPPQKKPVSKKAGGKKGARKSKKKQGEISKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGSTLEKKGGKEFVEAVIELRKKNGPLDVAEAAVSVGHGLPAKFVIHCNSPGWGSDKCEELLEKTVKNCLALADEKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN
SIO_010081: LOC114808650
subclass of: SO_0000673
so part of: LOC114808650
location: complement(join(677668..677833,689698..689872,695431..695520,701965..702064,713940..714050,718612..718809,720074..720180,758061..758232))
location: region:677668-758232:-1
so has part: feature:758061-758232:-1:exon
so has part: feature:720074-720180:-1:exon
so has part: feature:718612-718809:-1:exon
so has part: feature:713940-714050:-1:exon
so has part: feature:701965-702064:-1:exon
so has part: feature:695431-695520:-1:exon
so has part: feature:689698-689872:-1:exon
so has part: feature:677668-677833:-1:exon

XP_028912265.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:758061-758232:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:720074-720180:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:718612-718809:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:713940-714050:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:701965-702064:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:695431-695520:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:689698-689872:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:677668-677833:-1:exon

LOC114808652
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808652
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 810281..826854
location: region:810281-826854:1
so has part: feature:810281-826854:1:exon
subclass of: SO_0000011

114808652
type: Gene
SIO_000068: ncbigene

position:810281:1
position: 810281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:826854:1
position: 826854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:810281-826854:1:exon

LOC114808652
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9258
nc RNA class: lncRNA
gene: LOC114808652
product: uncharacterized LOC114808652
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_003756481.2
SIO_010081: LOC114808652
subclass of: SO_0000673
so part of: LOC114808652
location: join(810281..810403,824563..824680,826742..826854)
location: region:810281-826854:1
so has part: feature:810281-810403:1:exon
so has part: feature:824563-824680:1:exon
so has part: feature:826742-826854:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:810281-810403:1:exon

position:810403:1
position: 810403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:824563-824680:1:exon

position:824563:1
position: 824563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:824680:1
position: 824680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:826742-826854:1:exon

position:826742:1
position: 826742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114808657
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808657
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(887600..887737)
location: region:887600-887737:-1
so has part: feature:887600-887737:-1:exon
subclass of: SO_0000578

114808657
type: Gene
SIO_000068: ncbigene

position:887600:-1
position: 887600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:887737:-1
position: 887737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:887600-887737:-1:exon

LOC114808657
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9258
nc RNA class: snoRNA
gene: LOC114808657
product: small nucleolar RNA SNORA7
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00409
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003756485.1
SIO_010081: LOC114808657
subclass of: SO_0000673
so part of: LOC114808657
location: complement(887600..887737)
location: region:887600-887737:-1
so has part: feature:887600-887737:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:887600-887737:-1:exon

LOC100087101
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC100087101
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(912031..912789)
location: region:912031-912789:-1
so has part: feature:912031-912789:-1:exon
subclass of: SO_0000010

100087101
type: Gene
SIO_000068: ncbigene

position:912031:-1
position: 912031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:912789:-1
position: 912789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:912031-912789:-1:exon

LOC100087101
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC100087101
product: neurogenin-1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 26% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_029056426.1
SIO_010081: LOC100087101
subclass of: SO_0000673
so part of: LOC100087101
location: complement(join(912031..912187,912263..912789))
location: region:912031-912789:-1
so has part: feature:912263-912789:-1:exon
so has part: feature:912031-912187:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:912263-912789:-1:exon

position:912263:-1
position: 912263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:912031-912187:-1:exon

position:912187:-1
position: 912187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100087101
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC100087101
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: neurogenin-1
translation: MASPLDGGPLDPEPASQRSAFPTDEEAGGGGGRGGVGGGVPRRPPASAPPDPKGPPEEERWSRRGRARVRSEAALHSIRKSRRVKANDRERNRMHNLNAPLDELRGVLPTFPDDTKLTKIETLRFAYNYIWALSETLRLADQGLQGAPKDLLLPAFLGPAAPPSPGSDAESWASSVCSSSPLSICTSNPSSPATSEDYCYRPTETLLVFHPLPKDLLAGAPCFVQFH
SIO_010081: LOC100087101
subclass of: SO_0000673
so part of: LOC100087101
location: complement(join(912031..912187,912263..912789))
location: region:912031-912789:-1
so has part: feature:912263-912789:-1:exon
so has part: feature:912031-912187:-1:exon

XP_028912259.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:912263-912789:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:912031-912187:-1:exon

LOC114808649
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808649
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 991029..1055405
location: region:991029-1055405:1
so has part: feature:991029-1055405:1:exon
subclass of: SO_0000010

114808649
type: Gene
SIO_000068: ncbigene

position:991029:1
position: 991029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1055405:1
position: 1055405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:991029-1055405:1:exon

LOC114808649
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808649
product: mothers against decapentaplegic homolog 5-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_029056429.2
SIO_010081: LOC114808649
subclass of: SO_0000673
so part of: LOC114808649
location: join(991029..991289,1028949..1029547,1031311..1031562,1040129..1040248,1045056..1045277,1049732..1049988,1051871..1055405)
location: region:991029-1055405:1
so has part: feature:991029-991289:1:exon
so has part: feature:1028949-1029547:1:exon
so has part: feature:1031311-1031562:1:exon
so has part: feature:1040129-1040248:1:exon
so has part: feature:1045056-1045277:1:exon
so has part: feature:1049732-1049988:1:exon
so has part: feature:1051871-1055405:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:991029-991289:1:exon

position:991289:1
position: 991289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1028949-1029547:1:exon

position:1028949:1
position: 1028949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1029547:1
position: 1029547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1031311-1031562:1:exon

position:1031311:1
position: 1031311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1031562:1
position: 1031562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1040129-1040248:1:exon

position:1040129:1
position: 1040129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1040248:1
position: 1040248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1045056-1045277:1:exon

position:1045056:1
position: 1045056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1045277:1
position: 1045277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1049732-1049988:1:exon

position:1049732:1
position: 1049732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1049988:1
position: 1049988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1051871-1055405:1:exon

position:1051871:1
position: 1051871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC114808649
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808649
product: mothers against decapentaplegic homolog 5-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_029056430.2
SIO_010081: LOC114808649
subclass of: SO_0000673
so part of: LOC114808649
location: join(991921..992208,1028949..1029547,1031311..1031562,1040129..1040248,1045056..1045271,1049732..1049988,1051871..1055405)
location: region:991921-1055405:1
so has part: feature:991921-992208:1:exon
so has part: feature:1028949-1029547:1:exon
so has part: feature:1031311-1031562:1:exon
so has part: feature:1040129-1040248:1:exon
so has part: feature:1045056-1045271:1:exon
so has part: feature:1049732-1049988:1:exon
so has part: feature:1051871-1055405:1:exon

position:991921:1
position: 991921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:991921-992208:1:exon

position:992208:1
position: 992208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1028949-1029547:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1031311-1031562:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1040129-1040248:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1045056-1045271:1:exon

position:1045271:1
position: 1045271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1049732-1049988:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1051871-1055405:1:exon

LOC114808649
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808649
product: mothers against decapentaplegic homolog 5-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_029056428.2
SIO_010081: LOC114808649
subclass of: SO_0000673
so part of: LOC114808649
location: join(991924..992208,1028949..1029547,1031311..1031562,1040129..1040248,1045056..1045277,1049732..1049988,1051871..1055405)
location: region:991924-1055405:1
so has part: feature:991924-992208:1:exon
so has part: feature:1028949-1029547:1:exon
so has part: feature:1031311-1031562:1:exon
so has part: feature:1040129-1040248:1:exon
so has part: feature:1045056-1045277:1:exon
so has part: feature:1049732-1049988:1:exon
so has part: feature:1051871-1055405:1:exon

position:991924:1
position: 991924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:991924-992208:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1028949-1029547:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1031311-1031562:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1040129-1040248:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1045056-1045277:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1049732-1049988:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1051871-1055405:1:exon

LOC114808649
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808649
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mothers against decapentaplegic homolog 5-like isoform X1
translation: MTSMASLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSNPGQPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLDMCEFPFGSKQKEVCINPYHYKRVESPVLPPVLVPRHSEFNPQHSLLVQFRNLSHNEPHMPQNATFPDSFQQPNNISFLLSPNSPYSPSPTSSTYPSSPASSGPASPFELPADTPPPAYMPPDDQVGQDNSQSMDTSNSMIPQIMRNVDNRDVQPVAYEEPKHWCSIVYYELNNRVGEAFQASSTSVLVDGFTDPSNNKSRFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSSIFVQSRNCNYHHGFHRTTVCKIPSGCSLKIFNNQEFAQLLAQSVNHGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPLNPISSVS
SIO_010081: LOC114808649
subclass of: SO_0000673
so part of: LOC114808649
location: join(1029145..1029547,1031311..1031562,1040129..1040248,1045056..1045277,1049732..1049988,1051871..1052014)
location: region:1029145-1052014:1
so has part: feature:1029145-1029547:1:exon
so has part: feature:1031311-1031562:1:exon
so has part: feature:1040129-1040248:1:exon
so has part: feature:1045056-1045277:1:exon
so has part: feature:1049732-1049988:1:exon
so has part: feature:1051871-1052014:1:exon

XP_028912261.1
type: Protein
SIO_000068: ncbiprotein

position:1029145:1
position: 1029145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1052014:1
position: 1052014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1029145-1029547:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1031311-1031562:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1040129-1040248:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1045056-1045277:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1049732-1049988:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1051871-1052014:1:exon

LOC114808649
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808649
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mothers against decapentaplegic homolog 5-like isoform X1
translation: MTSMASLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSNPGQPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLDMCEFPFGSKQKEVCINPYHYKRVESPVLPPVLVPRHSEFNPQHSLLVQFRNLSHNEPHMPQNATFPDSFQQPNNISFLLSPNSPYSPSPTSSTYPSSPASSGPASPFELPADTPPPAYMPPDDQVGQDNSQSMDTSNSMIPQIMRNVDNRDVQPVAYEEPKHWCSIVYYELNNRVGEAFQASSTSVLVDGFTDPSNNKSRFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSSIFVQSRNCNYHHGFHRTTVCKIPSGCSLKIFNNQEFAQLLAQSVNHGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPLNPISSVS
SIO_010081: LOC114808649
subclass of: SO_0000673
so part of: LOC114808649
location: join(1029145..1029547,1031311..1031562,1040129..1040248,1045056..1045277,1049732..1049988,1051871..1052014)
location: region:1029145-1052014:1
so has part: feature:1029145-1029547:1:exon
so has part: feature:1031311-1031562:1:exon
so has part: feature:1040129-1040248:1:exon
so has part: feature:1045056-1045277:1:exon
so has part: feature:1049732-1049988:1:exon
so has part: feature:1051871-1052014:1:exon

XP_028912262.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1029145-1029547:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1031311-1031562:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1040129-1040248:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1045056-1045277:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1049732-1049988:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1051871-1052014:1:exon

LOC114808649
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808649
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mothers against decapentaplegic homolog 5-like isoform X2
translation: MTSMASLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSNPGQPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLDMCEFPFGSKQKEVCINPYHYKRVESPVLPPVLVPRHSEFNPQHSLLVQFRNLSHNEPHMPQNATFPDSFQQPNNISFLLSPNSPYSPSPTSSTYPSSPASSGPASPFELPADTPPPAYMPPDDQVGQDNSQSMDTSNSMIPQIMRNVDNRDVQPVAYEEPKHWCSIVYYELNNRVGEAFQASSTSVLVDGFTDPSNNKSRFCLGLLSNVNRNSTIENTRRHIGVHLYYVGGEVYAECLSDSSIFVQSRNCNYHHGFHRTTVCKIPSGCSLKIFNNQEFAQLLAQSVNHGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPLNPISSVS
SIO_010081: LOC114808649
subclass of: SO_0000673
so part of: LOC114808649
location: join(1029145..1029547,1031311..1031562,1040129..1040248,1045056..1045271,1049732..1049988,1051871..1052014)
location: region:1029145-1052014:1
so has part: feature:1029145-1029547:1:exon
so has part: feature:1031311-1031562:1:exon
so has part: feature:1040129-1040248:1:exon
so has part: feature:1045056-1045271:1:exon
so has part: feature:1049732-1049988:1:exon
so has part: feature:1051871-1052014:1:exon

XP_028912263.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1029145-1029547:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1031311-1031562:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1040129-1040248:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1045056-1045271:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1049732-1049988:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1051871-1052014:1:exon

LOC114808655
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808655
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1116774..1119579
location: region:1116774-1119579:1
so has part: feature:1116774-1119579:1:exon
subclass of: SO_0000010

114808655
type: Gene
SIO_000068: ncbigene

position:1116774:1
position: 1116774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1119579:1
position: 1119579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1116774-1119579:1:exon

LOC114808655
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808655
product: heterogeneous nuclear ribonucleoprotein A0
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_029056440.2
SIO_010081: LOC114808655
subclass of: SO_0000673
so part of: LOC114808655
location: 1116774..1119579
location: region:1116774-1119579:1
so has part: feature:1116774-1119579:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1116774-1119579:1:exon

LOC114808655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808655
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: heterogeneous nuclear ribonucleoprotein A0
translation: MENSQLCKLFIGGLNVQTSESSLRCHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEDDLVEHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPINGHRVEVKKAVPKEDIHPGSSGPRPGRGGRGGRGRSGARDLNGLSKGGGGYNSYDGYSRGGGYNAYIGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGSWGGRSNSGPYRGGYGGGGGSGGYGGSSF
SIO_010081: LOC114808655
subclass of: SO_0000673
so part of: LOC114808655
location: 1117248..1118138
location: region:1117248-1118138:1
so has part: feature:1117248-1118138:1:exon

XP_028912273.1
type: Protein
SIO_000068: ncbiprotein

position:1117248:1
position: 1117248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1118138:1
position: 1118138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1117248-1118138:1:exon

LOC120638180
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC120638180
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1163293..1166405)
location: region:1163293-1166405:-1
so has part: feature:1163293-1166405:-1:exon
subclass of: SO_0000011

120638180
type: Gene
SIO_000068: ncbigene

position:1163293:-1
position: 1163293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1166405:-1
position: 1166405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1163293-1166405:-1:exon

LOC120638180
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9258
nc RNA class: lncRNA
gene: LOC120638180
product: uncharacterized LOC120638180
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_005659694.1
SIO_010081: LOC120638180
subclass of: SO_0000673
so part of: LOC120638180
location: complement(join(1163293..1163835,1164765..1166405))
location: region:1163293-1166405:-1
so has part: feature:1164765-1166405:-1:exon
so has part: feature:1163293-1163835:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1164765-1166405:-1:exon

position:1164765:-1
position: 1164765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1163293-1163835:-1:exon

position:1163835:-1
position: 1163835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808648
type: Gene
subclass of: SO_0000704
RO_0002162: 9258
gene: LOC114808648
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1187037..1190431)
location: region:1187037-1190431:-1
so has part: feature:1187037-1190431:-1:exon
subclass of: SO_0000010

114808648
type: Gene
SIO_000068: ncbigene

position:1187037:-1
position: 1187037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1190431:-1
position: 1190431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1187037-1190431:-1:exon

LOC114808648
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9258
gene: LOC114808648
product: sequestosome-1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XM_029056427.2
SIO_010081: LOC114808648
subclass of: SO_0000673
so part of: LOC114808648
location: complement(join(1187037..1187200,1190051..1190431))
location: region:1187037-1190431:-1
so has part: feature:1190051-1190431:-1:exon
so has part: feature:1187037-1187200:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1190051-1190431:-1:exon

position:1190051:-1
position: 1190051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1187037-1187200:-1:exon

position:1187200:-1
position: 1187200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC114808648
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9258
gene: LOC114808648
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sequestosome-1-like
translation: MPAMSPQLTVKAYLLGKEESHREIRRFTLGPPEPPGGPGCCDRLLRRLDQVFPALRPGTFQAYYRDNMMAFSSDRELKMALPYAKDNIL
SIO_010081: LOC114808648
subclass of: SO_0000673
so part of: LOC114808648
location: complement(join(1187127..1187200,1190051..1190246))
location: region:1187127-1190246:-1
so has part: feature:1190051-1190246:-1:exon
so has part: feature:1187127-1187200:-1:exon

XP_028912260.1
type: Protein
SIO_000068: ncbiprotein

position:1187127:-1
position: 1187127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1190246:-1
position: 1190246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1190051-1190246:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1187127-1187200:-1:exon