Xanthomonas vesicatoria ATCC 35937 strain LMG911 plasmid pLMG911.2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
Complete genome sequences of four Solanaceae pathogen copper-resistant Xanthomonas: X. gardneri, X. euvesicatoria, X. vesicatoria and X. perforans
Submitted (12-DEC-2016) BIOS, CIRAD, 7 ch. de l'IRAT, Saint-Pierre 97410, Reunion
REFSEQ INFORMATION: The reference sequence is identical to\nCP018727.1.\nBacteria and source DNA available from Source DNA is available from\nthe CIRAD research center collection: 7 ch. de IRAT, 97410\nSaint-Pierre, Reunion.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2016\nAssembly Method :: SMRT Analysis HGAP protocol v. 2.3\nGenome Coverage :: 151.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 02:14:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,604\nCDSs (total) :: 4,496\nGenes (coding) :: 4,374\nCDSs (with protein) :: 4,374\nGenes (RNA) :: 108\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 46\nPseudo Genes (total) :: 122\nCDSs (without protein) :: 122\nPseudo Genes (ambiguous residues) :: 0 of 122\nPseudo Genes (frameshifted) :: 78 of 122\nPseudo Genes (incomplete) :: 49 of 122\nPseudo Genes (internal stop) :: 19 of 122\nPseudo Genes (multiple problems) :: 21 of 122\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_017113485.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005989203.1
COORDINATES: similar to AA sequence:RefSeq:WP_007973141.1
COORDINATES: protein motif:HMM:NF014045.2
COORDINATES: similar to AA sequence:RefSeq:WP_005918295.1
COORDINATES: similar to AA sequence:RefSeq:WP_005998076.1
COORDINATES: similar to AA sequence:RefSeq:WP_005998075.1
COORDINATES: similar to AA sequence:RefSeq:WP_017166310.1
COORDINATES: similar to AA sequence:RefSeq:WP_003490060.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_076612266.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017164029.1
COORDINATES: similar to AA sequence:RefSeq:WP_003490066.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017164027.1
COORDINATES: similar to AA sequence:RefSeq:WP_008575015.1
COORDINATES: similar to AA sequence:RefSeq:WP_008575014.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113420.1
COORDINATES: similar to AA sequence:RefSeq:WP_019238157.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_019238158.1
COORDINATES: similar to AA sequence:RefSeq:WP_017160738.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_017164020.1
COORDINATES: protein motif:HMM:NF016957.2
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_017162817.1
COORDINATES: similar to AA sequence:RefSeq:WP_005995704.1
COORDINATES: similar to AA sequence:RefSeq:WP_017164018.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017113981.1
COORDINATES: similar to AA sequence:RefSeq:WP_007974941.1
COORDINATES: similar to AA sequence:RefSeq:WP_017158413.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003469588.1
tannase/feruloyl esterase family alpha/beta hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_017113410.1
COORDINATES: similar to AA sequence:RefSeq:WP_017164084.1
COORDINATES: similar to AA sequence:RefSeq:WP_006451398.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113465.1
IncP-type conjugal transfer protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_017114728.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113463.1
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF021981.2
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019238174.1
COORDINATES: similar to AA sequence:RefSeq:WP_017163695.1
COORDINATES: similar to AA sequence:RefSeq:WP_017163694.1
COORDINATES: similar to AA sequence:RefSeq:WP_017162873.1
COORDINATES: similar to AA sequence:RefSeq:WP_007968746.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113443.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113444.1
COORDINATES: similar to AA sequence:RefSeq:WP_017163878.1
COORDINATES: similar to AA sequence:RefSeq:WP_017164699.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113441.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113440.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113439.1
COORDINATES: similar to AA sequence:RefSeq:WP_005993569.1
COORDINATES: similar to AA sequence:RefSeq:WP_017158590.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011347479.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_099982816.1
type III secretion system YopJ family effector AvrBsT