Calypte anna isolate BGI_N300 chromosome 10, bCalAnn1_v1.p, whole genome shotgun sequence.
type: Entry
definition: Calypte anna isolate BGI_N300 chromosome 10, bCalAnn1_v1.p, whole genome shotgun sequence.
sequence version: NC_044256.1
sequence date: 2019-08-24
sequence: sequence
division: CON
label: NC_044256.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA558503
dblink: SAMN02265252
keyword: WGS
keyword: RefSeq
source: Calypte anna (Anna's hummingbird)
organism: Calypte anna
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Apodiformes; Trochilidae; Calypte.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM012123.1.\nAssembly name: bCalAnn1_v1.p\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2019/05/16. The original whole-genome shotgun project has the\naccession RRCD00000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 26-SEP-2018\nAssembly Method :: FALCON v. 5.1.1; FALCON unzip v. 1.0.2;\n scaff10X v. git 4.28.2018; Bionano Solve\n DLS v. 3.2.1; Salsa2 HiC v. 2.0;\n smrtanalysis Arrow polishing & gap\n filling v. 5.1.0.26412; longranger align\n v. 2.2.2; freebayes v. 1.2.0;\n purge_haplotigs v. bit 7.10.2018; gEVAL\n manual curation v. 2018-09-07\nAssembly Name :: bCalAnn1_v1.p\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 54.0x\nSequencing Technology :: PacBio RSII; 10X Genomics linked reads;\n Bionano Genomics DLS; Arima Genomics HiC\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Calypte anna Annotation Release 101\nAnnotation Version :: 101\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.2\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 22664390
topology: linear
so has quality: SO_0000987
location: 1..22664390
location: region:1-22664390:1
RO_0002162: 9244

NC_044256
type: RefSeq
SIO_000068: refseq

PRJNA558503
type: BioProject
SIO_000068: bioproject

SAMN02265252
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22664390:1
position: 22664390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22664390:1:source
so part of: sequence
organism: Calypte anna
mol type: genomic DNA
isolate: BGI_N300
chromosome: 10
sex: female
country: USA

9244
type: Taxonomy
SIO_000068: taxonomy

LOC115598814
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: LOC115598814
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(<59..11155)
location: region:59-11155:-1
so has part: feature:59-11155:-1:exon
subclass of: SO_0000010

115598814
type: Gene
SIO_000068: ncbigene

position:59:-1
position: 59
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:11155:-1
position: 11155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59-11155:-1:exon

LOC115598814
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: LOC115598814
product: Bardet-Biedl syndrome 4 protein-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 93% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030456734.1
SIO_010081: LOC115598814
subclass of: SO_0000673
so part of: LOC115598814
location: complement(join(<59..113,5369..5441,6069..6180,6973..7037,11074..11155))
location: region:59-11155:-1
so has part: feature:11074-11155:-1:exon
so has part: feature:6973-7037:-1:exon
so has part: feature:6069-6180:-1:exon
so has part: feature:5369-5441:-1:exon
so has part: feature:59-113:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11074-11155:-1:exon

position:11074:-1
position: 11074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6973-7037:-1:exon

position:6973:-1
position: 6973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7037:-1
position: 7037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6069-6180:-1:exon

position:6069:-1
position: 6069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6180:-1
position: 6180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5369-5441:-1:exon

position:5369:-1
position: 5369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5441:-1
position: 5441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:59-113:-1:exon

position:113:-1
position: 113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115598814
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: LOC115598814
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Bardet-Biedl syndrome 4 protein-like
translation: MFSKTTRSVRLSSRSSSRSPTGCVNMQSTVQALIFRLEGKIQESLELFQTCSILNPRSADNLKQVARSLFLLGKHKAAIEVYNEAAKLDEKDWVFSRKHRPPYDIGVAVLA
SIO_010081: LOC115598814
subclass of: SO_0000673
so part of: LOC115598814
location: complement(join(<59..113,5369..5441,6069..6180,6973..7037,11074..11102))
location: region:59-11102:-1
so has part: feature:11074-11102:-1:exon
so has part: feature:6973-7037:-1:exon
so has part: feature:6069-6180:-1:exon
so has part: feature:5369-5441:-1:exon
so has part: feature:59-113:-1:exon

XP_030312594.1
type: Protein
SIO_000068: ncbiprotein

position:11102:-1
position: 11102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11074-11102:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6973-7037:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6069-6180:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5369-5441:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:59-113:-1:exon

LOC115598891
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: LOC115598891
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(26730..27999)
location: region:26730-27999:-1
so has part: feature:26730-27999:-1:exon
subclass of: SO_0000011

115598891
type: Gene
SIO_000068: ncbigene

position:26730:-1
position: 26730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27999:-1
position: 27999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26730-27999:-1:exon

LOC115598891
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9244
nc RNA class: lncRNA
gene: LOC115598891
product: uncharacterized LOC115598891
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_003987999.1
SIO_010081: LOC115598891
subclass of: SO_0000673
so part of: LOC115598891
location: complement(join(26730..26773,26968..27037,27950..27999))
location: region:26730-27999:-1
so has part: feature:27950-27999:-1:exon
so has part: feature:26968-27037:-1:exon
so has part: feature:26730-26773:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:27950-27999:-1:exon

position:27950:-1
position: 27950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:26968-27037:-1:exon

position:26968:-1
position: 26968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27037:-1
position: 27037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:26730-26773:-1:exon

position:26773:-1
position: 26773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ARIH1
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: ARIH1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(29883..88858)
location: region:29883-88858:-1
so has part: feature:29883-88858:-1:exon
subclass of: SO_0000010

103526268
type: Gene
SIO_000068: ncbigene

position:29883:-1
position: 29883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:88858:-1
position: 88858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29883-88858:-1:exon

ARIH1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: ARIH1
product: ariadne RBR E3 ubiquitin protein ligase 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 3 codons; deleted 7 bases in 6 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 1 Protein, and 54% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030457168.1
SIO_010081: ARIH1
subclass of: SO_0000673
so part of: ARIH1
location: complement(join(29883..30679,33493..33606,34458..34723,35958..36006,36103..36233,44244..44315,44710..44752,45257..45363,46393..46459,50552..50607,50991..51083,55809..55951,64116..64183,88218..88858))
location: region:29883-88858:-1
so has part: feature:88218-88858:-1:exon
so has part: feature:64116-64183:-1:exon
so has part: feature:55809-55951:-1:exon
so has part: feature:50991-51083:-1:exon
so has part: feature:50552-50607:-1:exon
so has part: feature:46393-46459:-1:exon
so has part: feature:45257-45363:-1:exon
so has part: feature:44710-44752:-1:exon
so has part: feature:44244-44315:-1:exon
so has part: feature:36103-36233:-1:exon
so has part: feature:35958-36006:-1:exon
so has part: feature:34458-34723:-1:exon
so has part: feature:33493-33606:-1:exon
so has part: feature:29883-30679:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:88218-88858:-1:exon

position:88218:-1
position: 88218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:64116-64183:-1:exon

position:64116:-1
position: 64116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:64183:-1
position: 64183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:55809-55951:-1:exon

position:55809:-1
position: 55809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:55951:-1
position: 55951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:50991-51083:-1:exon

position:50991:-1
position: 50991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51083:-1
position: 51083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:50552-50607:-1:exon

position:50552:-1
position: 50552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:50607:-1
position: 50607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:46393-46459:-1:exon

position:46393:-1
position: 46393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:46459:-1
position: 46459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:45257-45363:-1:exon

position:45257:-1
position: 45257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45363:-1
position: 45363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:44710-44752:-1:exon

position:44710:-1
position: 44710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44752:-1
position: 44752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:44244-44315:-1:exon

position:44244:-1
position: 44244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44315:-1
position: 44315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:36103-36233:-1:exon

position:36103:-1
position: 36103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36233:-1
position: 36233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:35958-36006:-1:exon

position:35958:-1
position: 35958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36006:-1
position: 36006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:34458-34723:-1:exon

position:34458:-1
position: 34458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34723:-1
position: 34723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:33493-33606:-1:exon

position:33493:-1
position: 33493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33606:-1
position: 33606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:29883-30679:-1:exon

position:30679:-1
position: 30679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ARIH1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: ARIH1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 3 codons; deleted 7 bases in 6 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase ARIH1
translation: MDSDEGYNYEFDEDEECSEDSGAEEDEEDEEEDEPDDNLDLGEVELVEPGLRVGGERDGLLGGETGGLGPGGGGGGGGLGGGPGPGGGGGPEQEEDYRYEVLTAEQILQHMVECIREVNEVIQVRPPGPAGGVGGRGRPGGPQRQQAWPGGRRARPSRGSQRLARSQEAPLGERGGSSAPPSRTRPLGAGRELASCRGSVGNQARGFGRAPRSLTQATITRILLSHFNWDKXKLMERYFDGNLEKLFAECHVINPSXKSRTRQMXTRSSAQDMPCQICYLNYPNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNTVMRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQYPDAKPVRCKCGRQFCFNCGENWHDPVKCKWLKKWIKKCDDDSETSNWIAANTKECPKCHITIEKDGGCNHMVCQNQNCKAEFCWVCLGPWEPHGSAWYNCNCYNEDDARDAQERSRAALQRYLFYCNRYMNHMQSLRFEHKLYAQVKQKMEEMQQHQLSWIEVQFLKKAVESSCQCRAHSMYTYVFAFYLKKNNQSIIFENNQADLENATEVLSGYLERDISQDSLQDIKQKVQDKYRYCESRRRVLLQHVHEGYEKDLWEYIED
SIO_010081: ARIH1
subclass of: SO_0000673
so part of: ARIH1
location: complement(join(30594..30679,33493..33606,34458..34723,35958..36006,36103..36233,44244..44315,44710..44752,45257..45363,46393..46459,50552..50607,50991..51083,55809..55951,64116..64183,88218..88858))
location: region:30594-88858:-1
so has part: feature:88218-88858:-1:exon
so has part: feature:64116-64183:-1:exon
so has part: feature:55809-55951:-1:exon
so has part: feature:50991-51083:-1:exon
so has part: feature:50552-50607:-1:exon
so has part: feature:46393-46459:-1:exon
so has part: feature:45257-45363:-1:exon
so has part: feature:44710-44752:-1:exon
so has part: feature:44244-44315:-1:exon
so has part: feature:36103-36233:-1:exon
so has part: feature:35958-36006:-1:exon
so has part: feature:34458-34723:-1:exon
so has part: feature:33493-33606:-1:exon
so has part: feature:30594-30679:-1:exon

XP_030313028.1
type: Protein
SIO_000068: ncbiprotein

position:30594:-1
position: 30594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:88218-88858:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:64116-64183:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:55809-55951:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:50991-51083:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:50552-50607:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:46393-46459:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:45257-45363:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:44710-44752:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:44244-44315:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:36103-36233:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:35958-36006:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:34458-34723:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:33493-33606:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:30594-30679:-1:exon

HEXA
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: HEXA
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 97056..108359
location: region:97056-108359:1
so has part: feature:97056-108359:1:exon
subclass of: SO_0000010

103526168
type: Gene
SIO_000068: ncbigene

position:97056:1
position: 97056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:108359:1
position: 108359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97056-108359:1:exon

HEXA
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: HEXA
product: hexosaminidase subunit alpha
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 ESTs, 1 long SRA read, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_030457432.1
SIO_010081: HEXA
subclass of: SO_0000673
so part of: HEXA
location: join(97056..97319,100841..100939,101272..101337,101503..101549,101883..101993,102795..102896,102970..103102,104134..104314,104606..104692,105044..105116,105537..105717,106026..106116,106518..106622,107401..108359)
location: region:97056-108359:1
so has part: feature:97056-97319:1:exon
so has part: feature:100841-100939:1:exon
so has part: feature:101272-101337:1:exon
so has part: feature:101503-101549:1:exon
so has part: feature:101883-101993:1:exon
so has part: feature:102795-102896:1:exon
so has part: feature:102970-103102:1:exon
so has part: feature:104134-104314:1:exon
so has part: feature:104606-104692:1:exon
so has part: feature:105044-105116:1:exon
so has part: feature:105537-105717:1:exon
so has part: feature:106026-106116:1:exon
so has part: feature:106518-106622:1:exon
so has part: feature:107401-108359:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:97056-97319:1:exon

position:97319:1
position: 97319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:100841-100939:1:exon

position:100841:1
position: 100841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:100939:1
position: 100939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:101272-101337:1:exon

position:101272:1
position: 101272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:101337:1
position: 101337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:101503-101549:1:exon

position:101503:1
position: 101503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:101549:1
position: 101549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:101883-101993:1:exon

position:101883:1
position: 101883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:101993:1
position: 101993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:102795-102896:1:exon

position:102795:1
position: 102795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:102896:1
position: 102896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:102970-103102:1:exon

position:102970:1
position: 102970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:103102:1
position: 103102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:104134-104314:1:exon

position:104134:1
position: 104134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:104314:1
position: 104314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:104606-104692:1:exon

position:104606:1
position: 104606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:104692:1
position: 104692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:105044-105116:1:exon

position:105044:1
position: 105044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:105116:1
position: 105116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:105537-105717:1:exon

position:105537:1
position: 105537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:105717:1
position: 105717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:106026-106116:1:exon

position:106026:1
position: 106026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:106116:1
position: 106116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:106518-106622:1:exon

position:106518:1
position: 106518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:106622:1
position: 106622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:107401-108359:1:exon

position:107401:1
position: 107401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HEXA
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: HEXA
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta-hexosaminidase subunit alpha
translation: MAAVRVLRVLLLLLEPAAALWPQPQAQRSPPASGRCPLPPRRFRFAHANDSAVGPGCAVLQAAFQRYWALLFAAARPTEDEPPWGTPCTQLLVFVATPGCDGFPSLDSKENYKLSVSEGSLLLSADAVWGALRGLETFSQLVGRDENGTYYINKTEIVDFPRFPHRGLLLDTSRHYLPLRAILETLDVMAYNKFNVFHWHIVDDPSFPYESLTFPELSKQGAFNAMTHVYTASDVQTVIEYARLRGIRVVAEFDTPGHTLSWGPGAPGLLTPCYLGKEPSGSYGPINPILNSTYQFVTSLFKEVSTVFPDFFLHLGGDEVDFTCWKSNPKINAFMKEMGFGEDYKKLESFYIQRLLDIVSSLGKGYIVWQEVFDNGVKVRPDTIIHVWKENSTPYMEEMGNVTRAGYRALLSAPWYLNRISYGQDWIAAYQVEPLEFEGSPEQKERVIGGEACMWGEYVDVTNLAPRLWPRAGAVAERLWSNKTVRDLQDAYMRLAEFRCRLLGRGVPAQPLYIGYCDNEFGGL
SIO_010081: HEXA
subclass of: SO_0000673
so part of: HEXA
location: join(97085..97319,100841..100939,101272..101337,101503..101549,101883..101993,102795..102896,102970..103102,104134..104314,104606..104692,105044..105116,105537..105717,106026..106116,106518..106622,107401..107464)
location: region:97085-107464:1
so has part: feature:97085-97319:1:exon
so has part: feature:100841-100939:1:exon
so has part: feature:101272-101337:1:exon
so has part: feature:101503-101549:1:exon
so has part: feature:101883-101993:1:exon
so has part: feature:102795-102896:1:exon
so has part: feature:102970-103102:1:exon
so has part: feature:104134-104314:1:exon
so has part: feature:104606-104692:1:exon
so has part: feature:105044-105116:1:exon
so has part: feature:105537-105717:1:exon
so has part: feature:106026-106116:1:exon
so has part: feature:106518-106622:1:exon
so has part: feature:107401-107464:1:exon

XP_030313292.1
type: Protein
SIO_000068: ncbiprotein

position:97085:1
position: 97085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:107464:1
position: 107464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97085-97319:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:100841-100939:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:101272-101337:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:101503-101549:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:101883-101993:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:102795-102896:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:102970-103102:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:104134-104314:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:104606-104692:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:105044-105116:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:105537-105717:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:106026-106116:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:106518-106622:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:107401-107464:1:exon

CELF6
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: CELF6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 110300..124794
location: region:110300-124794:1
so has part: feature:110300-124794:1:exon
subclass of: SO_0000010

103539686
type: Gene
SIO_000068: ncbigene

position:110300:1
position: 110300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:124794:1
position: 124794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:110300-124794:1:exon

CELF6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: CELF6
product: CUGBP Elav-like family member 6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 41 Proteins, and 83% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_008490146.2
SIO_010081: CELF6
subclass of: SO_0000673
so part of: CELF6
location: join(110300..110459,113213..113295,118382..118430,119856..119984,120106..120185,120674..120817,121206..121350,121430..121579,121899..121961,122768..122848,122962..123105,123838..123993,124566..124794)
location: region:110300-124794:1
so has part: feature:110300-110459:1:exon
so has part: feature:113213-113295:1:exon
so has part: feature:118382-118430:1:exon
so has part: feature:119856-119984:1:exon
so has part: feature:120106-120185:1:exon
so has part: feature:120674-120817:1:exon
so has part: feature:121206-121350:1:exon
so has part: feature:121430-121579:1:exon
so has part: feature:121899-121961:1:exon
so has part: feature:122768-122848:1:exon
so has part: feature:122962-123105:1:exon
so has part: feature:123838-123993:1:exon
so has part: feature:124566-124794:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:110300-110459:1:exon

position:110459:1
position: 110459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:113213-113295:1:exon

position:113213:1
position: 113213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:113295:1
position: 113295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:118382-118430:1:exon

position:118382:1
position: 118382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:118430:1
position: 118430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:119856-119984:1:exon

position:119856:1
position: 119856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:119984:1
position: 119984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:120106-120185:1:exon

position:120106:1
position: 120106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:120185:1
position: 120185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:120674-120817:1:exon

position:120674:1
position: 120674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:120817:1
position: 120817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:121206-121350:1:exon

position:121206:1
position: 121206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:121350:1
position: 121350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:121430-121579:1:exon

position:121430:1
position: 121430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:121579:1
position: 121579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:121899-121961:1:exon

position:121899:1
position: 121899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:121961:1
position: 121961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:122768-122848:1:exon

position:122768:1
position: 122768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:122848:1
position: 122848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:122962-123105:1:exon

position:122962:1
position: 122962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:123105:1
position: 123105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:123838-123993:1:exon

position:123838:1
position: 123838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:123993:1
position: 123993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:124566-124794:1:exon

position:124566:1
position: 124566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CELF6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: CELF6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CUGBP Elav-like family member 6
translation: MKDHDAIKLFVGQIPRNLEESDLKPLFEEFGRIYELTVLKDRFTGMHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSEGRGEDRKLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPDGASKGCAFVKYGSHAEAQAAINSLHGSQTMPGASSSLVVKFADTDKERTLRRMHHMAGQLGIFNPMTIQFGAYGAYTQAIMQQQAALMAAAQGTCLNPMAAIAAAQMQQMAAFNVSGLVATPLTPSSGTSTPPGIGTAPVPSIAAPIGVNGFSPLPPQTNGQPASETIYTNGIHPYPAQSPTVADPLQQAYAGMQHYAAAYPTAYAPISQAFPQQAPIIPQQQREGPEGCNLFIYHLPQEFGDAELTQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPTSAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY
SIO_010081: CELF6
subclass of: SO_0000673
so part of: CELF6
location: join(110315..110459,113213..113295,118382..118430,119856..119984,120106..120185,120674..120817,121206..121350,121430..121579,121899..121961,122768..122848,122962..123105,123838..123965)
location: region:110315-123965:1
so has part: feature:110315-110459:1:exon
so has part: feature:113213-113295:1:exon
so has part: feature:118382-118430:1:exon
so has part: feature:119856-119984:1:exon
so has part: feature:120106-120185:1:exon
so has part: feature:120674-120817:1:exon
so has part: feature:121206-121350:1:exon
so has part: feature:121430-121579:1:exon
so has part: feature:121899-121961:1:exon
so has part: feature:122768-122848:1:exon
so has part: feature:122962-123105:1:exon
so has part: feature:123838-123965:1:exon

XP_008488368.2
type: Protein
SIO_000068: ncbiprotein

position:110315:1
position: 110315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:123965:1
position: 123965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:110315-110459:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:113213-113295:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:118382-118430:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:119856-119984:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:120106-120185:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:120674-120817:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:121206-121350:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:121430-121579:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:121899-121961:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:122768-122848:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:122962-123105:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:123838-123965:1:exon

PARP6
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: PARP6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(126980..133925)
location: region:126980-133925:-1
so has part: feature:126980-133925:-1:exon
subclass of: SO_0000010

103526067
type: Gene
SIO_000068: ncbigene

position:126980:-1
position: 126980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:133925:-1
position: 133925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:126980-133925:-1:exon

PARP6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: PARP6
product: poly(ADP-ribose) polymerase family member 6, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 4 ESTs, 1 long SRA read, 5 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030456851.1
SIO_010081: PARP6
subclass of: SO_0000673
so part of: PARP6
location: complement(join(126980..127444,127527..127611,127746..127809,127920..127999,128351..128420,128566..128638,128747..128859,129268..129316,129585..129652,129801..129866,129967..130092,130166..130258,130345..130440,130691..130744,131111..131291,131525..131674,131937..132003,132095..132185,132320..132380,132830..132924,133057..133134,133829..133925))
location: region:126980-133925:-1
so has part: feature:133829-133925:-1:exon
so has part: feature:133057-133134:-1:exon
so has part: feature:132830-132924:-1:exon
so has part: feature:132320-132380:-1:exon
so has part: feature:132095-132185:-1:exon
so has part: feature:131937-132003:-1:exon
so has part: feature:131525-131674:-1:exon
so has part: feature:131111-131291:-1:exon
so has part: feature:130691-130744:-1:exon
so has part: feature:130345-130440:-1:exon
so has part: feature:130166-130258:-1:exon
so has part: feature:129967-130092:-1:exon
so has part: feature:129801-129866:-1:exon
so has part: feature:129585-129652:-1:exon
so has part: feature:129268-129316:-1:exon
so has part: feature:128747-128859:-1:exon
so has part: feature:128566-128638:-1:exon
so has part: feature:128351-128420:-1:exon
so has part: feature:127920-127999:-1:exon
so has part: feature:127746-127809:-1:exon
so has part: feature:127527-127611:-1:exon
so has part: feature:126980-127444:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:133829-133925:-1:exon

position:133829:-1
position: 133829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:133057-133134:-1:exon

position:133057:-1
position: 133057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:133134:-1
position: 133134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:132830-132924:-1:exon

position:132830:-1
position: 132830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:132924:-1
position: 132924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:132320-132380:-1:exon

position:132320:-1
position: 132320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:132380:-1
position: 132380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:132095-132185:-1:exon

position:132095:-1
position: 132095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:132185:-1
position: 132185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:131937-132003:-1:exon

position:131937:-1
position: 131937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:132003:-1
position: 132003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:131525-131674:-1:exon

position:131525:-1
position: 131525
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:131674:-1
position: 131674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:131111-131291:-1:exon

position:131111:-1
position: 131111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:131291:-1
position: 131291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:130691-130744:-1:exon

position:130691:-1
position: 130691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:130744:-1
position: 130744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:130345-130440:-1:exon

position:130345:-1
position: 130345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:130440:-1
position: 130440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:130166-130258:-1:exon

position:130166:-1
position: 130166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:130258:-1
position: 130258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:129967-130092:-1:exon

position:129967:-1
position: 129967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:130092:-1
position: 130092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:129801-129866:-1:exon

position:129801:-1
position: 129801
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:129866:-1
position: 129866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:129585-129652:-1:exon

position:129585:-1
position: 129585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:129652:-1
position: 129652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:129268-129316:-1:exon

position:129268:-1
position: 129268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:129316:-1
position: 129316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:128747-128859:-1:exon

position:128747:-1
position: 128747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:128859:-1
position: 128859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:128566-128638:-1:exon

position:128566:-1
position: 128566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:128638:-1
position: 128638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:128351-128420:-1:exon

position:128351:-1
position: 128351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:128420:-1
position: 128420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:127920-127999:-1:exon

position:127920:-1
position: 127920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:127999:-1
position: 127999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:127746-127809:-1:exon

position:127746:-1
position: 127746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:127809:-1
position: 127809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:127527-127611:-1:exon

position:127527:-1
position: 127527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:127611:-1
position: 127611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:126980-127444:-1:exon

position:127444:-1
position: 127444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PARP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: PARP6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein mono-ADP-ribosyltransferase PARP6
translation: MDLKGQYWTDDDSDGDNESEEFLYGVQGTCAADLYRHPQLDADIEAVKEIYSENAVAIREYGTIDDVDIDLHVNISFLDEEVATAWKVLRTEPIVLRLRFSLSQYLDGPEPSIEVFQPSNKEGFGLGLQLKKILGMFTSQQWKHLSNDFLKTQQEKRHSWFKTSGTIKKFRAGLSIFSPIPKSPSFPVIQESVLKGKLSIPEARVNRLMNRSVSCTMKNPKVEVFGYPPPSTQAGVAPFNILVGGHCKNIPTLEYGFLVQIMKYAEQRIPTLNEYCVVCDEQHVFQNGSMLKPAVCTRELCVFSFYTLGVMSGAAEEVATGAEVVDLLVAMCRAALESPRKSIIFEPYPSVVDPNDPKTLAFNPKKKNYERLQKALDSVMSIREMTQGSYLEIKKQMDKLDPLAHPLLQWIISSNRSHIVKLPLSRQLKFMHTSHQFLLLSSPPAKEARFRTAKKLYGSTFAFHGSHIENWHSILRNGLVNASYTKLQLHGAAYGKGIYLSPISSISFGYSGMGKGQHRMPSKDELVQRYNRMNTIPQTRSIQSRFLQSRNLNCIALCEVITSKDLQKHGNIWVCPVSDHVCTRFFFVYEDGQVGDANINTQDPKIQKEIMRVIGTQVYTN
SIO_010081: PARP6
subclass of: SO_0000673
so part of: PARP6
location: complement(join(127342..127444,127527..127611,127746..127809,127920..127999,128351..128420,128566..128638,128747..128859,129268..129316,129585..129652,129801..129866,129967..130092,130166..130258,130345..130440,130691..130744,131111..131291,131525..131674,131937..132003,132095..132185,132320..132380,132830..132924,133057..133134,133829..133831))
location: region:127342-133831:-1
so has part: feature:133829-133831:-1:exon
so has part: feature:133057-133134:-1:exon
so has part: feature:132830-132924:-1:exon
so has part: feature:132320-132380:-1:exon
so has part: feature:132095-132185:-1:exon
so has part: feature:131937-132003:-1:exon
so has part: feature:131525-131674:-1:exon
so has part: feature:131111-131291:-1:exon
so has part: feature:130691-130744:-1:exon
so has part: feature:130345-130440:-1:exon
so has part: feature:130166-130258:-1:exon
so has part: feature:129967-130092:-1:exon
so has part: feature:129801-129866:-1:exon
so has part: feature:129585-129652:-1:exon
so has part: feature:129268-129316:-1:exon
so has part: feature:128747-128859:-1:exon
so has part: feature:128566-128638:-1:exon
so has part: feature:128351-128420:-1:exon
so has part: feature:127920-127999:-1:exon
so has part: feature:127746-127809:-1:exon
so has part: feature:127527-127611:-1:exon
so has part: feature:127342-127444:-1:exon

XP_030312711.1
type: Protein
SIO_000068: ncbiprotein

position:127342:-1
position: 127342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:133831:-1
position: 133831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:133829-133831:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:133057-133134:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:132830-132924:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:132320-132380:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:132095-132185:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:131937-132003:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:131525-131674:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:131111-131291:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:130691-130744:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:130345-130440:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:130166-130258:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:129967-130092:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:129801-129866:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:129585-129652:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:129268-129316:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:128747-128859:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:128566-128638:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:128351-128420:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:127920-127999:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:127746-127809:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:127527-127611:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:127342-127444:-1:exon

PARP6
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9244
gene: PARP6
product: poly(ADP-ribose) polymerase family member 6, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 5 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_003987943.1
SIO_010081: PARP6
so part of: PARP6
location: complement(join(127554..127611,127746..127809,127920..127999,128566..128638,128747..128859,129268..129316,129585..129652,129801..129866,129967..130092,130166..130258,130345..130440,130691..130744,131111..131291,131525..131674,131937..132003,132095..132185,132320..132380,132830..132924,133057..133134,133829..133896))
location: region:127554-133896:-1
so has part: feature:133829-133896:-1:exon
so has part: feature:133057-133134:-1:exon
so has part: feature:132830-132924:-1:exon
so has part: feature:132320-132380:-1:exon
so has part: feature:132095-132185:-1:exon
so has part: feature:131937-132003:-1:exon
so has part: feature:131525-131674:-1:exon
so has part: feature:131111-131291:-1:exon
so has part: feature:130691-130744:-1:exon
so has part: feature:130345-130440:-1:exon
so has part: feature:130166-130258:-1:exon
so has part: feature:129967-130092:-1:exon
so has part: feature:129801-129866:-1:exon
so has part: feature:129585-129652:-1:exon
so has part: feature:129268-129316:-1:exon
so has part: feature:128747-128859:-1:exon
so has part: feature:128566-128638:-1:exon
so has part: feature:127920-127999:-1:exon
so has part: feature:127746-127809:-1:exon
so has part: feature:127554-127611:-1:exon

position:127554:-1
position: 127554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:133896:-1
position: 133896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:133829-133896:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:133057-133134:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:132830-132924:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:132320-132380:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:132095-132185:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:131937-132003:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:131525-131674:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:131111-131291:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:130691-130744:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:130345-130440:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:130166-130258:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:129967-130092:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:129801-129866:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:129585-129652:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:129268-129316:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:128747-128859:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:128566-128638:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:127920-127999:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:127746-127809:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:127554-127611:-1:exon

PKM
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: PKM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 135230..155177
location: region:135230-155177:1
so has part: feature:135230-155177:1:exon
subclass of: SO_0000010

103539514
type: Gene
SIO_000068: ncbigene

position:135230:1
position: 135230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:155177:1
position: 155177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:135230-155177:1:exon

PKM
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: PKM
product: pyruvate kinase M1/2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 139 ESTs, 5 long SRA reads, 26 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_030457388.1
SIO_010081: PKM
subclass of: SO_0000673
so part of: PKM
location: join(135230..135372,140522..140691,141078..141169,144072..144203,144399..144585,145371..145641,146223..146373,147696..147848,151522..151688,153764..153945,154429..154772)
location: region:135230-154772:1
so has part: feature:135230-135372:1:exon
so has part: feature:140522-140691:1:exon
so has part: feature:141078-141169:1:exon
so has part: feature:144072-144203:1:exon
so has part: feature:144399-144585:1:exon
so has part: feature:145371-145641:1:exon
so has part: feature:146223-146373:1:exon
so has part: feature:147696-147848:1:exon
so has part: feature:151522-151688:1:exon
so has part: feature:153764-153945:1:exon
so has part: feature:154429-154772:1:exon

position:154772:1
position: 154772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:135230-135372:1:exon

position:135372:1
position: 135372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:140522-140691:1:exon

position:140522:1
position: 140522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:140691:1
position: 140691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:141078-141169:1:exon

position:141078:1
position: 141078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:141169:1
position: 141169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:144072-144203:1:exon

position:144072:1
position: 144072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:144203:1
position: 144203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:144399-144585:1:exon

position:144399:1
position: 144399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:144585:1
position: 144585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:145371-145641:1:exon

position:145371:1
position: 145371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:145641:1
position: 145641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:146223-146373:1:exon

position:146223:1
position: 146223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:146373:1
position: 146373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:147696-147848:1:exon

position:147696:1
position: 147696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:147848:1
position: 147848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:151522-151688:1:exon

position:151522:1
position: 151522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:151688:1
position: 151688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:153764-153945:1:exon

position:153764:1
position: 153764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:153945:1
position: 153945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:154429-154772:1:exon

position:154429:1
position: 154429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PKM
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: PKM
product: pyruvate kinase M1/2, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 138 ESTs, 5 long SRA reads, 8 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_030457391.1
SIO_010081: PKM
subclass of: SO_0000673
so part of: PKM
location: join(135262..135495,140522..140691,141078..141169,144072..144203,144399..144585,145371..145641,146223..146373,147696..147848,150869..151035,153764..153945,154429..154772)
location: region:135262-154772:1
so has part: feature:135262-135495:1:exon
so has part: feature:140522-140691:1:exon
so has part: feature:141078-141169:1:exon
so has part: feature:144072-144203:1:exon
so has part: feature:144399-144585:1:exon
so has part: feature:145371-145641:1:exon
so has part: feature:146223-146373:1:exon
so has part: feature:147696-147848:1:exon
so has part: feature:150869-151035:1:exon
so has part: feature:153764-153945:1:exon
so has part: feature:154429-154772:1:exon

position:135262:1
position: 135262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:135262-135495:1:exon

position:135495:1
position: 135495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:140522-140691:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:141078-141169:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:144072-144203:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:144399-144585:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:145371-145641:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:146223-146373:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:147696-147848:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:150869-151035:1:exon

position:150869:1
position: 150869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:151035:1
position: 151035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:153764-153945:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:154429-154772:1:exon

PKM
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: PKM
product: pyruvate kinase M1/2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 138 ESTs, 7 long SRA reads, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_030457389.1
SIO_010081: PKM
subclass of: SO_0000673
so part of: PKM
location: join(135264..135372,140522..140691,141078..141169,144072..144203,144399..144585,145371..145641,146223..146373,147696..147848,150869..151035,153764..153945,154429..154772)
location: region:135264-154772:1
so has part: feature:135264-135372:1:exon
so has part: feature:140522-140691:1:exon
so has part: feature:141078-141169:1:exon
so has part: feature:144072-144203:1:exon
so has part: feature:144399-144585:1:exon
so has part: feature:145371-145641:1:exon
so has part: feature:146223-146373:1:exon
so has part: feature:147696-147848:1:exon
so has part: feature:150869-151035:1:exon
so has part: feature:153764-153945:1:exon
so has part: feature:154429-154772:1:exon

position:135264:1
position: 135264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:135264-135372:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:140522-140691:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:141078-141169:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:144072-144203:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:144399-144585:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:145371-145641:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:146223-146373:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:147696-147848:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:150869-151035:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:153764-153945:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:154429-154772:1:exon

PKM
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: PKM
product: pyruvate kinase M1/2, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 139 ESTs, 7 long SRA reads, 26 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_030457390.1
SIO_010081: PKM
subclass of: SO_0000673
so part of: PKM
location: join(135290..135495,140522..140691,141078..141169,144072..144203,144399..144585,145371..145641,146223..146373,147696..147848,151522..151688,153764..153945,154429..154772)
location: region:135290-154772:1
so has part: feature:135290-135495:1:exon
so has part: feature:140522-140691:1:exon
so has part: feature:141078-141169:1:exon
so has part: feature:144072-144203:1:exon
so has part: feature:144399-144585:1:exon
so has part: feature:145371-145641:1:exon
so has part: feature:146223-146373:1:exon
so has part: feature:147696-147848:1:exon
so has part: feature:151522-151688:1:exon
so has part: feature:153764-153945:1:exon
so has part: feature:154429-154772:1:exon

position:135290:1
position: 135290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:135290-135495:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:140522-140691:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:141078-141169:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:144072-144203:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:144399-144585:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:145371-145641:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:146223-146373:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:147696-147848:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:151522-151688:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:153764-153945:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:154429-154772:1:exon

PKM
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: PKM
product: pyruvate kinase M1/2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 140 ESTs, 4 long SRA reads, 11 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_030457387.1
SIO_010081: PKM
subclass of: SO_0000673
so part of: PKM
location: join(135327..135495,140254..140313,140522..140691,141078..141169,144072..144203,144399..144585,145371..145641,146223..146373,147696..147848,150869..151035,153764..153945,154429..155177)
location: region:135327-155177:1
so has part: feature:135327-135495:1:exon
so has part: feature:140254-140313:1:exon
so has part: feature:140522-140691:1:exon
so has part: feature:141078-141169:1:exon
so has part: feature:144072-144203:1:exon
so has part: feature:144399-144585:1:exon
so has part: feature:145371-145641:1:exon
so has part: feature:146223-146373:1:exon
so has part: feature:147696-147848:1:exon
so has part: feature:150869-151035:1:exon
so has part: feature:153764-153945:1:exon
so has part: feature:154429-155177:1:exon

position:135327:1
position: 135327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:135327-135495:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:140254-140313:1:exon

position:140254:1
position: 140254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:140313:1
position: 140313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:140522-140691:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:141078-141169:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:144072-144203:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:144399-144585:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:145371-145641:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:146223-146373:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:147696-147848:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:150869-151035:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:153764-153945:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:154429-155177:1:exon

PKM
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: PKM
product: pyruvate kinase M1/2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 141 ESTs, 3 long SRA reads, 27 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_030457385.1
SIO_010081: PKM
subclass of: SO_0000673
so part of: PKM
location: join(135354..135372,140254..140313,140522..140691,141078..141169,144072..144203,144399..144585,145371..145641,146223..146373,147696..147848,151522..151688,153764..153945,154429..155177)
location: region:135354-155177:1
so has part: feature:135354-135372:1:exon
so has part: feature:140254-140313:1:exon
so has part: feature:140522-140691:1:exon
so has part: feature:141078-141169:1:exon
so has part: feature:144072-144203:1:exon
so has part: feature:144399-144585:1:exon
so has part: feature:145371-145641:1:exon
so has part: feature:146223-146373:1:exon
so has part: feature:147696-147848:1:exon
so has part: feature:151522-151688:1:exon
so has part: feature:153764-153945:1:exon
so has part: feature:154429-155177:1:exon

position:135354:1
position: 135354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:135354-135372:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:140254-140313:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:140522-140691:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:141078-141169:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:144072-144203:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:144399-144585:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:145371-145641:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:146223-146373:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:147696-147848:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:151522-151688:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:153764-153945:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:154429-155177:1:exon

PKM
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: PKM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pyruvate kinase PKM isoform X2
translation: MKRSYEGNICIAGRQRITATMSKHHDAGTAFIQTQQLHAAMADTFLEHMCRLDIDSEPTIARNTGIICTIGPASRSVDKLKEMIKSGMNVARLNFSHGTHEYHAGTIKNVREATESFASDPITYRPVAIALDTKGPEIRTGLIKGSGTAEVELKKGAQLKVTLDDAYMENCDENVLWVDYKNITKVIEIGSKIYVDDGLISLLVKEKGKDYIMTEIENGGMLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQNVDMVFASFIRKAADVHAVRKVLGEKGKNIKIISKIENHEGVRRFDEIMEASDGIMVARGDLGIEIPAEKVFVAQKMMIGRCNRAGKPIICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHAIAREAEAAMFHRQLFEEILRLNVKNTDPADAMAAGAVEASFKCLAAALIVLTESGRSAHLVSRYRPRAPIIAVTRNDQTARQAHLYRGIFPVLCKEAALDAWAEDVDLRVNLGMNVGKARGFFKSGDLVVVLTGWRPGSGYTNTMRVVPVP
SIO_010081: PKM
subclass of: SO_0000673
so part of: PKM
location: join(140273..140313,140522..140691,141078..141169,144072..144203,144399..144585,145371..145641,146223..146373,147696..147848,150869..151035,153764..153945,154429..154535)
location: region:140273-154535:1
so has part: feature:140273-140313:1:exon
so has part: feature:140522-140691:1:exon
so has part: feature:141078-141169:1:exon
so has part: feature:144072-144203:1:exon
so has part: feature:144399-144585:1:exon
so has part: feature:145371-145641:1:exon
so has part: feature:146223-146373:1:exon
so has part: feature:147696-147848:1:exon
so has part: feature:150869-151035:1:exon
so has part: feature:153764-153945:1:exon
so has part: feature:154429-154535:1:exon

XP_030313247.1
type: Protein
SIO_000068: ncbiprotein

position:140273:1
position: 140273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:154535:1
position: 154535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:140273-140313:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:140522-140691:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:141078-141169:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:144072-144203:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:144399-144585:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:145371-145641:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:146223-146373:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:147696-147848:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:150869-151035:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:153764-153945:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:154429-154535:1:exon

PKM
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: PKM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pyruvate kinase PKM isoform X1
translation: MKRSYEGNICIAGRQRITATMSKHHDAGTAFIQTQQLHAAMADTFLEHMCRLDIDSEPTIARNTGIICTIGPASRSVDKLKEMIKSGMNVARLNFSHGTHEYHAGTIKNVREATESFASDPITYRPVAIALDTKGPEIRTGLIKGSGTAEVELKKGAQLKVTLDDAYMENCDENVLWVDYKNITKVIEIGSKIYVDDGLISLLVKEKGKDYIMTEIENGGMLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQNVDMVFASFIRKAADVHAVRKVLGEKGKNIKIISKIENHEGVRRFDEIMEASDGIMVARGDLGIEIPAEKVFVAQKMMIGRCNRAGKPIICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHAIAREAEAAIFHRQLFEELRRLTSLNCDPTEAAAVGAVEASFKCCSGAIIVLTKSGRSAHLVSRYRPRAPIIAVTRNDQTARQAHLYRGIFPVLCKEAALDAWAEDVDLRVNLGMNVGKARGFFKSGDLVVVLTGWRPGSGYTNTMRVVPVP
SIO_010081: PKM
subclass of: SO_0000673
so part of: PKM
location: join(140273..140313,140522..140691,141078..141169,144072..144203,144399..144585,145371..145641,146223..146373,147696..147848,151522..151688,153764..153945,154429..154535)
location: region:140273-154535:1
so has part: feature:140273-140313:1:exon
so has part: feature:140522-140691:1:exon
so has part: feature:141078-141169:1:exon
so has part: feature:144072-144203:1:exon
so has part: feature:144399-144585:1:exon
so has part: feature:145371-145641:1:exon
so has part: feature:146223-146373:1:exon
so has part: feature:147696-147848:1:exon
so has part: feature:151522-151688:1:exon
so has part: feature:153764-153945:1:exon
so has part: feature:154429-154535:1:exon

XP_030313245.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:140273-140313:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:140522-140691:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:141078-141169:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:144072-144203:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:144399-144585:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:145371-145641:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:146223-146373:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:147696-147848:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:151522-151688:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:153764-153945:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:154429-154535:1:exon

PKM
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: PKM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pyruvate kinase PKM isoform X4
translation: MSKHHDAGTAFIQTQQLHAAMADTFLEHMCRLDIDSEPTIARNTGIICTIGPASRSVDKLKEMIKSGMNVARLNFSHGTHEYHAGTIKNVREATESFASDPITYRPVAIALDTKGPEIRTGLIKGSGTAEVELKKGAQLKVTLDDAYMENCDENVLWVDYKNITKVIEIGSKIYVDDGLISLLVKEKGKDYIMTEIENGGMLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQNVDMVFASFIRKAADVHAVRKVLGEKGKNIKIISKIENHEGVRRFDEIMEASDGIMVARGDLGIEIPAEKVFVAQKMMIGRCNRAGKPIICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHAIAREAEAAMFHRQLFEEILRLNVKNTDPADAMAAGAVEASFKCLAAALIVLTESGRSAHLVSRYRPRAPIIAVTRNDQTARQAHLYRGIFPVLCKEAALDAWAEDVDLRVNLGMNVGKARGFFKSGDLVVVLTGWRPGSGYTNTMRVVPVP
SIO_010081: PKM
subclass of: SO_0000673
so part of: PKM
location: join(140541..140691,141078..141169,144072..144203,144399..144585,145371..145641,146223..146373,147696..147848,150869..151035,153764..153945,154429..154535)
location: region:140541-154535:1
so has part: feature:140541-140691:1:exon
so has part: feature:141078-141169:1:exon
so has part: feature:144072-144203:1:exon
so has part: feature:144399-144585:1:exon
so has part: feature:145371-145641:1:exon
so has part: feature:146223-146373:1:exon
so has part: feature:147696-147848:1:exon
so has part: feature:150869-151035:1:exon
so has part: feature:153764-153945:1:exon
so has part: feature:154429-154535:1:exon

XP_030313249.1
type: Protein
SIO_000068: ncbiprotein

position:140541:1
position: 140541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:140541-140691:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:141078-141169:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:144072-144203:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:144399-144585:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:145371-145641:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:146223-146373:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:147696-147848:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:150869-151035:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:153764-153945:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:154429-154535:1:exon

PKM
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: PKM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pyruvate kinase PKM isoform X4
translation: MSKHHDAGTAFIQTQQLHAAMADTFLEHMCRLDIDSEPTIARNTGIICTIGPASRSVDKLKEMIKSGMNVARLNFSHGTHEYHAGTIKNVREATESFASDPITYRPVAIALDTKGPEIRTGLIKGSGTAEVELKKGAQLKVTLDDAYMENCDENVLWVDYKNITKVIEIGSKIYVDDGLISLLVKEKGKDYIMTEIENGGMLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQNVDMVFASFIRKAADVHAVRKVLGEKGKNIKIISKIENHEGVRRFDEIMEASDGIMVARGDLGIEIPAEKVFVAQKMMIGRCNRAGKPIICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHAIAREAEAAMFHRQLFEEILRLNVKNTDPADAMAAGAVEASFKCLAAALIVLTESGRSAHLVSRYRPRAPIIAVTRNDQTARQAHLYRGIFPVLCKEAALDAWAEDVDLRVNLGMNVGKARGFFKSGDLVVVLTGWRPGSGYTNTMRVVPVP
SIO_010081: PKM
subclass of: SO_0000673
so part of: PKM
location: join(140541..140691,141078..141169,144072..144203,144399..144585,145371..145641,146223..146373,147696..147848,150869..151035,153764..153945,154429..154535)
location: region:140541-154535:1
so has part: feature:140541-140691:1:exon
so has part: feature:141078-141169:1:exon
so has part: feature:144072-144203:1:exon
so has part: feature:144399-144585:1:exon
so has part: feature:145371-145641:1:exon
so has part: feature:146223-146373:1:exon
so has part: feature:147696-147848:1:exon
so has part: feature:150869-151035:1:exon
so has part: feature:153764-153945:1:exon
so has part: feature:154429-154535:1:exon

XP_030313251.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:140541-140691:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:141078-141169:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:144072-144203:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:144399-144585:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:145371-145641:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:146223-146373:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:147696-147848:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:150869-151035:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:153764-153945:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:154429-154535:1:exon

PKM
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: PKM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pyruvate kinase PKM isoform X3
translation: MSKHHDAGTAFIQTQQLHAAMADTFLEHMCRLDIDSEPTIARNTGIICTIGPASRSVDKLKEMIKSGMNVARLNFSHGTHEYHAGTIKNVREATESFASDPITYRPVAIALDTKGPEIRTGLIKGSGTAEVELKKGAQLKVTLDDAYMENCDENVLWVDYKNITKVIEIGSKIYVDDGLISLLVKEKGKDYIMTEIENGGMLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQNVDMVFASFIRKAADVHAVRKVLGEKGKNIKIISKIENHEGVRRFDEIMEASDGIMVARGDLGIEIPAEKVFVAQKMMIGRCNRAGKPIICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHAIAREAEAAIFHRQLFEELRRLTSLNCDPTEAAAVGAVEASFKCCSGAIIVLTKSGRSAHLVSRYRPRAPIIAVTRNDQTARQAHLYRGIFPVLCKEAALDAWAEDVDLRVNLGMNVGKARGFFKSGDLVVVLTGWRPGSGYTNTMRVVPVP
SIO_010081: PKM
subclass of: SO_0000673
so part of: PKM
location: join(140541..140691,141078..141169,144072..144203,144399..144585,145371..145641,146223..146373,147696..147848,151522..151688,153764..153945,154429..154535)
location: region:140541-154535:1
so has part: feature:140541-140691:1:exon
so has part: feature:141078-141169:1:exon
so has part: feature:144072-144203:1:exon
so has part: feature:144399-144585:1:exon
so has part: feature:145371-145641:1:exon
so has part: feature:146223-146373:1:exon
so has part: feature:147696-147848:1:exon
so has part: feature:151522-151688:1:exon
so has part: feature:153764-153945:1:exon
so has part: feature:154429-154535:1:exon

XP_030313248.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:140541-140691:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:141078-141169:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:144072-144203:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:144399-144585:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:145371-145641:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:146223-146373:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:147696-147848:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:151522-151688:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:153764-153945:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:154429-154535:1:exon

PKM
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: PKM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pyruvate kinase PKM isoform X3
translation: MSKHHDAGTAFIQTQQLHAAMADTFLEHMCRLDIDSEPTIARNTGIICTIGPASRSVDKLKEMIKSGMNVARLNFSHGTHEYHAGTIKNVREATESFASDPITYRPVAIALDTKGPEIRTGLIKGSGTAEVELKKGAQLKVTLDDAYMENCDENVLWVDYKNITKVIEIGSKIYVDDGLISLLVKEKGKDYIMTEIENGGMLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQNVDMVFASFIRKAADVHAVRKVLGEKGKNIKIISKIENHEGVRRFDEIMEASDGIMVARGDLGIEIPAEKVFVAQKMMIGRCNRAGKPIICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHAIAREAEAAIFHRQLFEELRRLTSLNCDPTEAAAVGAVEASFKCCSGAIIVLTKSGRSAHLVSRYRPRAPIIAVTRNDQTARQAHLYRGIFPVLCKEAALDAWAEDVDLRVNLGMNVGKARGFFKSGDLVVVLTGWRPGSGYTNTMRVVPVP
SIO_010081: PKM
subclass of: SO_0000673
so part of: PKM
location: join(140541..140691,141078..141169,144072..144203,144399..144585,145371..145641,146223..146373,147696..147848,151522..151688,153764..153945,154429..154535)
location: region:140541-154535:1
so has part: feature:140541-140691:1:exon
so has part: feature:141078-141169:1:exon
so has part: feature:144072-144203:1:exon
so has part: feature:144399-144585:1:exon
so has part: feature:145371-145641:1:exon
so has part: feature:146223-146373:1:exon
so has part: feature:147696-147848:1:exon
so has part: feature:151522-151688:1:exon
so has part: feature:153764-153945:1:exon
so has part: feature:154429-154535:1:exon

XP_030313250.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:140541-140691:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:141078-141169:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:144072-144203:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:144399-144585:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:145371-145641:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:146223-146373:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:147696-147848:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:151522-151688:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:153764-153945:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:154429-154535:1:exon

GRAMD2A
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: GRAMD2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 155382..167980
location: region:155382-167980:1
so has part: feature:155382-167980:1:exon
subclass of: SO_0000010

103525970
type: Gene
SIO_000068: ncbigene

position:155382:1
position: 155382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:167980:1
position: 167980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:155382-167980:1:exon

GRAMD2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: GRAMD2A
product: GRAM domain containing 2A, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_030457077.1
SIO_010081: GRAMD2A
subclass of: SO_0000673
so part of: GRAMD2A
location: join(155382..155442,156000..156335,159423..159536,159910..159967,161237..161309,161391..161494,162255..162353,163383..163454,164394..164456,165682..165838,166195..166294,166403..166510,166921..167980)
location: region:155382-167980:1
so has part: feature:155382-155442:1:exon
so has part: feature:156000-156335:1:exon
so has part: feature:159423-159536:1:exon
so has part: feature:159910-159967:1:exon
so has part: feature:161237-161309:1:exon
so has part: feature:161391-161494:1:exon
so has part: feature:162255-162353:1:exon
so has part: feature:163383-163454:1:exon
so has part: feature:164394-164456:1:exon
so has part: feature:165682-165838:1:exon
so has part: feature:166195-166294:1:exon
so has part: feature:166403-166510:1:exon
so has part: feature:166921-167980:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:155382-155442:1:exon

position:155442:1
position: 155442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:156000-156335:1:exon

position:156000:1
position: 156000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:156335:1
position: 156335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:159423-159536:1:exon

position:159423:1
position: 159423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:159536:1
position: 159536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:159910-159967:1:exon

position:159910:1
position: 159910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:159967:1
position: 159967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:161237-161309:1:exon

position:161237:1
position: 161237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:161309:1
position: 161309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:161391-161494:1:exon

position:161391:1
position: 161391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:161494:1
position: 161494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:162255-162353:1:exon

position:162255:1
position: 162255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:162353:1
position: 162353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:163383-163454:1:exon

position:163383:1
position: 163383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:163454:1
position: 163454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:164394-164456:1:exon

position:164394:1
position: 164394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:164456:1
position: 164456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:165682-165838:1:exon

position:165682:1
position: 165682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:165838:1
position: 165838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:166195-166294:1:exon

position:166195:1
position: 166195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:166294:1
position: 166294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:166403-166510:1:exon

position:166403:1
position: 166403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:166510:1
position: 166510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:166921-167980:1:exon

position:166921:1
position: 166921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GRAMD2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: GRAMD2A
product: GRAM domain containing 2A, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030457073.1
SIO_010081: GRAMD2A
subclass of: SO_0000673
so part of: GRAMD2A
location: join(155395..155442,156000..156335,159409..159536,159910..159967,161237..161309,161391..161494,162255..162353,163359..163454,164394..164540,165682..165838,166195..166294,166403..166510,166921..167980)
location: region:155395-167980:1
so has part: feature:155395-155442:1:exon
so has part: feature:156000-156335:1:exon
so has part: feature:159409-159536:1:exon
so has part: feature:159910-159967:1:exon
so has part: feature:161237-161309:1:exon
so has part: feature:161391-161494:1:exon
so has part: feature:162255-162353:1:exon
so has part: feature:163359-163454:1:exon
so has part: feature:164394-164540:1:exon
so has part: feature:165682-165838:1:exon
so has part: feature:166195-166294:1:exon
so has part: feature:166403-166510:1:exon
so has part: feature:166921-167980:1:exon

position:155395:1
position: 155395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:155395-155442:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:156000-156335:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:159409-159536:1:exon

position:159409:1
position: 159409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:159910-159967:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:161237-161309:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:161391-161494:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:162255-162353:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:163359-163454:1:exon

position:163359:1
position: 163359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:164394-164540:1:exon

position:164540:1
position: 164540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:165682-165838:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:166195-166294:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:166403-166510:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:166921-167980:1:exon

GRAMD2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: GRAMD2A
product: GRAM domain containing 2A, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030457071.1
SIO_010081: GRAMD2A
subclass of: SO_0000673
so part of: GRAMD2A
location: join(155395..155442,156000..156335,159423..159536,159910..159967,161237..161309,161391..161494,162255..162353,163359..163454,164394..164540,165682..165838,166195..166294,166403..166510,166921..167980)
location: region:155395-167980:1
so has part: feature:155395-155442:1:exon
so has part: feature:156000-156335:1:exon
so has part: feature:159423-159536:1:exon
so has part: feature:159910-159967:1:exon
so has part: feature:161237-161309:1:exon
so has part: feature:161391-161494:1:exon
so has part: feature:162255-162353:1:exon
so has part: feature:163359-163454:1:exon
so has part: feature:164394-164540:1:exon
so has part: feature:165682-165838:1:exon
so has part: feature:166195-166294:1:exon
so has part: feature:166403-166510:1:exon
so has part: feature:166921-167980:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:155395-155442:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:156000-156335:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:159423-159536:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:159910-159967:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:161237-161309:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:161391-161494:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:162255-162353:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:163359-163454:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:164394-164540:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:165682-165838:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:166195-166294:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:166403-166510:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:166921-167980:1:exon

GRAMD2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: GRAMD2A
product: GRAM domain containing 2A, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030457076.1
SIO_010081: GRAMD2A
subclass of: SO_0000673
so part of: GRAMD2A
location: join(155395..155442,156000..156335,159423..159536,159910..159967,161237..161309,161391..161494,162255..162353,163359..163454,164394..164456,165682..165838,166195..166294,166403..166510,166921..167980)
location: region:155395-167980:1
so has part: feature:155395-155442:1:exon
so has part: feature:156000-156335:1:exon
so has part: feature:159423-159536:1:exon
so has part: feature:159910-159967:1:exon
so has part: feature:161237-161309:1:exon
so has part: feature:161391-161494:1:exon
so has part: feature:162255-162353:1:exon
so has part: feature:163359-163454:1:exon
so has part: feature:164394-164456:1:exon
so has part: feature:165682-165838:1:exon
so has part: feature:166195-166294:1:exon
so has part: feature:166403-166510:1:exon
so has part: feature:166921-167980:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:155395-155442:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:156000-156335:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:159423-159536:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:159910-159967:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:161237-161309:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:161391-161494:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:162255-162353:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:163359-163454:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:164394-164456:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:165682-165838:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:166195-166294:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:166403-166510:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:166921-167980:1:exon

GRAMD2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: GRAMD2A
product: GRAM domain containing 2A, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_030457075.1
SIO_010081: GRAMD2A
subclass of: SO_0000673
so part of: GRAMD2A
location: join(155395..155442,156000..156335,159423..159536,159910..159967,161237..161309,161391..161494,162255..162353,163383..163454,164394..164540,165682..165838,166195..166294,166403..166510,166921..167980)
location: region:155395-167980:1
so has part: feature:155395-155442:1:exon
so has part: feature:156000-156335:1:exon
so has part: feature:159423-159536:1:exon
so has part: feature:159910-159967:1:exon
so has part: feature:161237-161309:1:exon
so has part: feature:161391-161494:1:exon
so has part: feature:162255-162353:1:exon
so has part: feature:163383-163454:1:exon
so has part: feature:164394-164540:1:exon
so has part: feature:165682-165838:1:exon
so has part: feature:166195-166294:1:exon
so has part: feature:166403-166510:1:exon
so has part: feature:166921-167980:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:155395-155442:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:156000-156335:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:159423-159536:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:159910-159967:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:161237-161309:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:161391-161494:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:162255-162353:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:163383-163454:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:164394-164540:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:165682-165838:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:166195-166294:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:166403-166510:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:166921-167980:1:exon

GRAMD2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: GRAMD2A
product: GRAM domain containing 2A, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_030457072.1
SIO_010081: GRAMD2A
subclass of: SO_0000673
so part of: GRAMD2A
location: join(155783..156335,159423..159536,159910..159967,161237..161309,161391..161494,162255..162353,163359..163454,164394..164540,165682..165838,166195..166294,166403..166510,166921..167980)
location: region:155783-167980:1
so has part: feature:155783-156335:1:exon
so has part: feature:159423-159536:1:exon
so has part: feature:159910-159967:1:exon
so has part: feature:161237-161309:1:exon
so has part: feature:161391-161494:1:exon
so has part: feature:162255-162353:1:exon
so has part: feature:163359-163454:1:exon
so has part: feature:164394-164540:1:exon
so has part: feature:165682-165838:1:exon
so has part: feature:166195-166294:1:exon
so has part: feature:166403-166510:1:exon
so has part: feature:166921-167980:1:exon

position:155783:1
position: 155783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:155783-156335:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:159423-159536:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:159910-159967:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:161237-161309:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:161391-161494:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:162255-162353:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:163359-163454:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:164394-164540:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:165682-165838:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:166195-166294:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:166403-166510:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:166921-167980:1:exon

GRAMD2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: GRAMD2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GRAM domain-containing protein 2A isoform X1
translation: MHEKVSPLKSPEPMHGREKLEASHKEKSLDSLDGSLHLNEALKDEDIKKCHREVAASKYNSQYHKLFKDIPTEESVLKVCSCALQRDILIQGRLYISPNWLCFYANLFGKDIKVVIPVVSVQLIKKHKTARLLPNGLAITTTASRKILSLSLLQYIFVSLISRDSVYDVLRRVCTHLQVSSKKSLSLKELSEEPDAVSLVRVRAALGEGRTPTNSPCGQESSHLAPSEVIVPEGKWRKVSPASLSLSLPDTDYQCIHRTSVSSLSAKESSCTSEEPLVSESAINTEEELEVEQSCVAELRPSDYQLLKIFIVLICLLVVSSSYLAFRIFRLEQQLCSLNRDYLSRGHRR
SIO_010081: GRAMD2A
subclass of: SO_0000673
so part of: GRAMD2A
location: join(159433..159536,159910..159967,161237..161309,161391..161494,162255..162353,163359..163454,164394..164540,165682..165838,166195..166294,166403..166510,166921..166924)
location: region:159433-166924:1
so has part: feature:159433-159536:1:exon
so has part: feature:159910-159967:1:exon
so has part: feature:161237-161309:1:exon
so has part: feature:161391-161494:1:exon
so has part: feature:162255-162353:1:exon
so has part: feature:163359-163454:1:exon
so has part: feature:164394-164540:1:exon
so has part: feature:165682-165838:1:exon
so has part: feature:166195-166294:1:exon
so has part: feature:166403-166510:1:exon
so has part: feature:166921-166924:1:exon

XP_030312931.1
type: Protein
SIO_000068: ncbiprotein

position:159433:1
position: 159433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:166924:1
position: 166924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:159433-159536:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:159910-159967:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:161237-161309:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:161391-161494:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:162255-162353:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:163359-163454:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:164394-164540:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:165682-165838:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:166195-166294:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:166403-166510:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:166921-166924:1:exon

GRAMD2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: GRAMD2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GRAM domain-containing protein 2A isoform X1
translation: MHEKVSPLKSPEPMHGREKLEASHKEKSLDSLDGSLHLNEALKDEDIKKCHREVAASKYNSQYHKLFKDIPTEESVLKVCSCALQRDILIQGRLYISPNWLCFYANLFGKDIKVVIPVVSVQLIKKHKTARLLPNGLAITTTASRKILSLSLLQYIFVSLISRDSVYDVLRRVCTHLQVSSKKSLSLKELSEEPDAVSLVRVRAALGEGRTPTNSPCGQESSHLAPSEVIVPEGKWRKVSPASLSLSLPDTDYQCIHRTSVSSLSAKESSCTSEEPLVSESAINTEEELEVEQSCVAELRPSDYQLLKIFIVLICLLVVSSSYLAFRIFRLEQQLCSLNRDYLSRGHRR
SIO_010081: GRAMD2A
subclass of: SO_0000673
so part of: GRAMD2A
location: join(159433..159536,159910..159967,161237..161309,161391..161494,162255..162353,163359..163454,164394..164540,165682..165838,166195..166294,166403..166510,166921..166924)
location: region:159433-166924:1
so has part: feature:159433-159536:1:exon
so has part: feature:159910-159967:1:exon
so has part: feature:161237-161309:1:exon
so has part: feature:161391-161494:1:exon
so has part: feature:162255-162353:1:exon
so has part: feature:163359-163454:1:exon
so has part: feature:164394-164540:1:exon
so has part: feature:165682-165838:1:exon
so has part: feature:166195-166294:1:exon
so has part: feature:166403-166510:1:exon
so has part: feature:166921-166924:1:exon

XP_030312932.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:159433-159536:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:159910-159967:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:161237-161309:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:161391-161494:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:162255-162353:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:163359-163454:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:164394-164540:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:165682-165838:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:166195-166294:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:166403-166510:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:166921-166924:1:exon

GRAMD2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: GRAMD2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GRAM domain-containing protein 2A isoform X1
translation: MHEKVSPLKSPEPMHGREKLEASHKEKSLDSLDGSLHLNEALKDEDIKKCHREVAASKYNSQYHKLFKDIPTEESVLKVCSCALQRDILIQGRLYISPNWLCFYANLFGKDIKVVIPVVSVQLIKKHKTARLLPNGLAITTTASRKILSLSLLQYIFVSLISRDSVYDVLRRVCTHLQVSSKKSLSLKELSEEPDAVSLVRVRAALGEGRTPTNSPCGQESSHLAPSEVIVPEGKWRKVSPASLSLSLPDTDYQCIHRTSVSSLSAKESSCTSEEPLVSESAINTEEELEVEQSCVAELRPSDYQLLKIFIVLICLLVVSSSYLAFRIFRLEQQLCSLNRDYLSRGHRR
SIO_010081: GRAMD2A
subclass of: SO_0000673
so part of: GRAMD2A
location: join(159433..159536,159910..159967,161237..161309,161391..161494,162255..162353,163359..163454,164394..164540,165682..165838,166195..166294,166403..166510,166921..166924)
location: region:159433-166924:1
so has part: feature:159433-159536:1:exon
so has part: feature:159910-159967:1:exon
so has part: feature:161237-161309:1:exon
so has part: feature:161391-161494:1:exon
so has part: feature:162255-162353:1:exon
so has part: feature:163359-163454:1:exon
so has part: feature:164394-164540:1:exon
so has part: feature:165682-165838:1:exon
so has part: feature:166195-166294:1:exon
so has part: feature:166403-166510:1:exon
so has part: feature:166921-166924:1:exon

XP_030312933.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:159433-159536:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:159910-159967:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:161237-161309:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:161391-161494:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:162255-162353:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:163359-163454:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:164394-164540:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:165682-165838:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:166195-166294:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:166403-166510:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:166921-166924:1:exon

GRAMD2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: GRAMD2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GRAM domain-containing protein 2A isoform X3
translation: MHEKVSPLKSPEPMHGREKLEASHKEKSLDSLDGSLHLNEALKDEDIKKCHREVAASKYNSQYHKLFKDIPTEESVLKVCSCALQRDILIQGRLYISPNWLCFYANLFGKDIKVVIPVVSVQLIKKHKTARLLPNGLAITTTASRKILSLSLLQYIFVSLISRDSVYDVLRRVCTHLQVSSKKSLSLKELSEEPDAVSLEVIVPEGKWRKVSPASLSLSLPDTDYQCIHRTSVSSLSAKESSCTSEEPLVSESAINTEEELEVEQSCVAELRPSDYQLLKIFIVLICLLVVSSSYLAFRIFRLEQQLCSLNRDYLSRGHRR
SIO_010081: GRAMD2A
subclass of: SO_0000673
so part of: GRAMD2A
location: join(159433..159536,159910..159967,161237..161309,161391..161494,162255..162353,163359..163454,164394..164456,165682..165838,166195..166294,166403..166510,166921..166924)
location: region:159433-166924:1
so has part: feature:159433-159536:1:exon
so has part: feature:159910-159967:1:exon
so has part: feature:161237-161309:1:exon
so has part: feature:161391-161494:1:exon
so has part: feature:162255-162353:1:exon
so has part: feature:163359-163454:1:exon
so has part: feature:164394-164456:1:exon
so has part: feature:165682-165838:1:exon
so has part: feature:166195-166294:1:exon
so has part: feature:166403-166510:1:exon
so has part: feature:166921-166924:1:exon

XP_030312936.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:159433-159536:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:159910-159967:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:161237-161309:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:161391-161494:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:162255-162353:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:163359-163454:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:164394-164456:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:165682-165838:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:166195-166294:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:166403-166510:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:166921-166924:1:exon

GRAMD2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: GRAMD2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GRAM domain-containing protein 2A isoform X2
translation: MHEKVSPLKSPEPMHGREKLEASHKEKSLDSLDGSLHLNEALKDEDIKKCHREVAASKYNSQYHKLFKDIPTEESVLKVCSCALQRDILIQGRLYISPNWLCFYANLFGKDIKVVIPVVSVQLIKKHKTARLLPNGLAITTTASRKYIFVSLISRDSVYDVLRRVCTHLQVSSKKSLSLKELSEEPDAVSLVRVRAALGEGRTPTNSPCGQESSHLAPSEVIVPEGKWRKVSPASLSLSLPDTDYQCIHRTSVSSLSAKESSCTSEEPLVSESAINTEEELEVEQSCVAELRPSDYQLLKIFIVLICLLVVSSSYLAFRIFRLEQQLCSLNRDYLSRGHRR
SIO_010081: GRAMD2A
subclass of: SO_0000673
so part of: GRAMD2A
location: join(159433..159536,159910..159967,161237..161309,161391..161494,162255..162353,163383..163454,164394..164540,165682..165838,166195..166294,166403..166510,166921..166924)
location: region:159433-166924:1
so has part: feature:159433-159536:1:exon
so has part: feature:159910-159967:1:exon
so has part: feature:161237-161309:1:exon
so has part: feature:161391-161494:1:exon
so has part: feature:162255-162353:1:exon
so has part: feature:163383-163454:1:exon
so has part: feature:164394-164540:1:exon
so has part: feature:165682-165838:1:exon
so has part: feature:166195-166294:1:exon
so has part: feature:166403-166510:1:exon
so has part: feature:166921-166924:1:exon

XP_030312935.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:159433-159536:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:159910-159967:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:161237-161309:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:161391-161494:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:162255-162353:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:163383-163454:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:164394-164540:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:165682-165838:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:166195-166294:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:166403-166510:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:166921-166924:1:exon

GRAMD2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: GRAMD2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GRAM domain-containing protein 2A isoform X4
translation: MHEKVSPLKSPEPMHGREKLEASHKEKSLDSLDGSLHLNEALKDEDIKKCHREVAASKYNSQYHKLFKDIPTEESVLKVCSCALQRDILIQGRLYISPNWLCFYANLFGKDIKVVIPVVSVQLIKKHKTARLLPNGLAITTTASRKYIFVSLISRDSVYDVLRRVCTHLQVSSKKSLSLKELSEEPDAVSLEVIVPEGKWRKVSPASLSLSLPDTDYQCIHRTSVSSLSAKESSCTSEEPLVSESAINTEEELEVEQSCVAELRPSDYQLLKIFIVLICLLVVSSSYLAFRIFRLEQQLCSLNRDYLSRGHRR
SIO_010081: GRAMD2A
subclass of: SO_0000673
so part of: GRAMD2A
location: join(159433..159536,159910..159967,161237..161309,161391..161494,162255..162353,163383..163454,164394..164456,165682..165838,166195..166294,166403..166510,166921..166924)
location: region:159433-166924:1
so has part: feature:159433-159536:1:exon
so has part: feature:159910-159967:1:exon
so has part: feature:161237-161309:1:exon
so has part: feature:161391-161494:1:exon
so has part: feature:162255-162353:1:exon
so has part: feature:163383-163454:1:exon
so has part: feature:164394-164456:1:exon
so has part: feature:165682-165838:1:exon
so has part: feature:166195-166294:1:exon
so has part: feature:166403-166510:1:exon
so has part: feature:166921-166924:1:exon

XP_030312937.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:159433-159536:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:159910-159967:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:161237-161309:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:161391-161494:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:162255-162353:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:163383-163454:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:164394-164456:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:165682-165838:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:166195-166294:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:166403-166510:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:166921-166924:1:exon

SENP8
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: SENP8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(170097..176279)
location: region:170097-176279:-1
so has part: feature:170097-176279:-1:exon
subclass of: SO_0000010

103539414
type: Gene
SIO_000068: ncbigene

position:170097:-1
position: 170097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:176279:-1
position: 176279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:170097-176279:-1:exon

SENP8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: SENP8
product: SUMO peptidase family member, NEDD8 specific, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_030457079.1
SIO_010081: SENP8
subclass of: SO_0000673
so part of: SENP8
location: complement(join(170097..171729,176207..176279))
location: region:170097-176279:-1
so has part: feature:176207-176279:-1:exon
so has part: feature:170097-171729:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:176207-176279:-1:exon

position:176207:-1
position: 176207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:170097-171729:-1:exon

position:171729:-1
position: 171729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SENP8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: SENP8
product: SUMO peptidase family member, NEDD8 specific, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030457078.1
SIO_010081: SENP8
subclass of: SO_0000673
so part of: SENP8
location: complement(join(170097..171729,175508..175836,176207..176254))
location: region:170097-176254:-1
so has part: feature:176207-176254:-1:exon
so has part: feature:175508-175836:-1:exon
so has part: feature:170097-171729:-1:exon

position:176254:-1
position: 176254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:176207-176254:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:175508-175836:-1:exon

position:175508:-1
position: 175508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:175836:-1
position: 175836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:170097-171729:-1:exon

SENP8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: SENP8
product: SUMO peptidase family member, NEDD8 specific, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030457080.1
SIO_010081: SENP8
subclass of: SO_0000673
so part of: SENP8
location: complement(join(170097..171729,172694..172903))
location: region:170097-172903:-1
so has part: feature:172694-172903:-1:exon
so has part: feature:170097-171729:-1:exon

position:172903:-1
position: 172903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:172694-172903:-1:exon

position:172694:-1
position: 172694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:170097-171729:-1:exon

SENP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: SENP8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sentrin-specific protease 8
translation: MDPVVLSYMDSLLRQSDVALLEPPNWLNDHIIGFAFEYFANHQFQEFSNQVCFISPEVAQFIKCALSQEEIAIFLQPLDLLHKKLVFLPINDNSNQAAGGTHWSLLVYFRDKKCFAHYDSHSKCNLVHAKQVAGKLEAFLDKRGNKATFVEEKAPAQQNSYDCGMYVICNTEAICQGHFRGRPEPLLQLLTPSYITQKRSEWKALITRLAQK
SIO_010081: SENP8
subclass of: SO_0000673
so part of: SENP8
location: complement(171048..171686)
location: region:171048-171686:-1
so has part: feature:171048-171686:-1:exon

XP_030312938.1
type: Protein
SIO_000068: ncbiprotein

position:171048:-1
position: 171048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:171686:-1
position: 171686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:171048-171686:-1:exon

SENP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: SENP8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sentrin-specific protease 8
translation: MDPVVLSYMDSLLRQSDVALLEPPNWLNDHIIGFAFEYFANHQFQEFSNQVCFISPEVAQFIKCALSQEEIAIFLQPLDLLHKKLVFLPINDNSNQAAGGTHWSLLVYFRDKKCFAHYDSHSKCNLVHAKQVAGKLEAFLDKRGNKATFVEEKAPAQQNSYDCGMYVICNTEAICQGHFRGRPEPLLQLLTPSYITQKRSEWKALITRLAQK
SIO_010081: SENP8
subclass of: SO_0000673
so part of: SENP8
location: complement(171048..171686)
location: region:171048-171686:-1
so has part: feature:171048-171686:-1:exon

XP_030312939.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:171048-171686:-1:exon

SENP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: SENP8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sentrin-specific protease 8
translation: MDPVVLSYMDSLLRQSDVALLEPPNWLNDHIIGFAFEYFANHQFQEFSNQVCFISPEVAQFIKCALSQEEIAIFLQPLDLLHKKLVFLPINDNSNQAAGGTHWSLLVYFRDKKCFAHYDSHSKCNLVHAKQVAGKLEAFLDKRGNKATFVEEKAPAQQNSYDCGMYVICNTEAICQGHFRGRPEPLLQLLTPSYITQKRSEWKALITRLAQK
SIO_010081: SENP8
subclass of: SO_0000673
so part of: SENP8
location: complement(171048..171686)
location: region:171048-171686:-1
so has part: feature:171048-171686:-1:exon

XP_030312940.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:171048-171686:-1:exon

MYO9A
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: MYO9A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 176435..341773
location: region:176435-341773:1
so has part: feature:176435-341773:1:exon
subclass of: SO_0000010

103539317
type: Gene
SIO_000068: ncbigene

position:176435:1
position: 176435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:341773:1
position: 341773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:176435-341773:1:exon

MYO9A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: MYO9A
product: myosin IXA
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030457120.1
SIO_010081: MYO9A
subclass of: SO_0000673
so part of: MYO9A
location: join(176435..176509,206567..207487,236590..236684,240472..240534,241807..241906,244513..244569,247924..248021,250254..250380,257360..257449,274869..274985,283315..283449,295510..295631,296849..296990,297777..297972,301887..302006,306424..306499,311540..311683,312372..312411,313254..313376,316180..316260,317153..317263,318219..318341,318814..318963,319190..319500,320405..322066,322636..322717,323646..323858,328012..328124,328518..328675,329143..329366,329777..329893,330316..330504,331398..331445,332075..332186,333061..333122,334487..334679,335116..335244,335580..335685,336161..336292,337383..337506,340208..340410,340592..340734,341145..341773)
location: region:176435-341773:1
so has part: feature:176435-176509:1:exon
so has part: feature:206567-207487:1:exon
so has part: feature:236590-236684:1:exon
so has part: feature:240472-240534:1:exon
so has part: feature:241807-241906:1:exon
so has part: feature:244513-244569:1:exon
so has part: feature:247924-248021:1:exon
so has part: feature:250254-250380:1:exon
so has part: feature:257360-257449:1:exon
so has part: feature:274869-274985:1:exon
so has part: feature:283315-283449:1:exon
so has part: feature:295510-295631:1:exon
so has part: feature:296849-296990:1:exon
so has part: feature:297777-297972:1:exon
so has part: feature:301887-302006:1:exon
so has part: feature:306424-306499:1:exon
so has part: feature:311540-311683:1:exon
so has part: feature:312372-312411:1:exon
so has part: feature:313254-313376:1:exon
so has part: feature:316180-316260:1:exon
so has part: feature:317153-317263:1:exon
so has part: feature:318219-318341:1:exon
so has part: feature:318814-318963:1:exon
so has part: feature:319190-319500:1:exon
so has part: feature:320405-322066:1:exon
so has part: feature:322636-322717:1:exon
so has part: feature:323646-323858:1:exon
so has part: feature:328012-328124:1:exon
so has part: feature:328518-328675:1:exon
so has part: feature:329143-329366:1:exon
so has part: feature:329777-329893:1:exon
so has part: feature:330316-330504:1:exon
so has part: feature:331398-331445:1:exon
so has part: feature:332075-332186:1:exon
so has part: feature:333061-333122:1:exon
so has part: feature:334487-334679:1:exon
so has part: feature:335116-335244:1:exon
so has part: feature:335580-335685:1:exon
so has part: feature:336161-336292:1:exon
so has part: feature:337383-337506:1:exon
so has part: feature:340208-340410:1:exon
so has part: feature:340592-340734:1:exon
so has part: feature:341145-341773:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:176435-176509:1:exon

position:176509:1
position: 176509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:206567-207487:1:exon

position:206567:1
position: 206567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:207487:1
position: 207487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:236590-236684:1:exon

position:236590:1
position: 236590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:236684:1
position: 236684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:240472-240534:1:exon

position:240472:1
position: 240472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:240534:1
position: 240534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:241807-241906:1:exon

position:241807:1
position: 241807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:241906:1
position: 241906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:244513-244569:1:exon

position:244513:1
position: 244513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:244569:1
position: 244569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:247924-248021:1:exon

position:247924:1
position: 247924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:248021:1
position: 248021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:250254-250380:1:exon

position:250254:1
position: 250254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:250380:1
position: 250380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:257360-257449:1:exon

position:257360:1
position: 257360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:257449:1
position: 257449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:274869-274985:1:exon

position:274869:1
position: 274869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:274985:1
position: 274985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:283315-283449:1:exon

position:283315:1
position: 283315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:283449:1
position: 283449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:295510-295631:1:exon

position:295510:1
position: 295510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:295631:1
position: 295631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:296849-296990:1:exon

position:296849:1
position: 296849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:296990:1
position: 296990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:297777-297972:1:exon

position:297777:1
position: 297777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:297972:1
position: 297972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:301887-302006:1:exon

position:301887:1
position: 301887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:302006:1
position: 302006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:306424-306499:1:exon

position:306424:1
position: 306424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:306499:1
position: 306499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:311540-311683:1:exon

position:311540:1
position: 311540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:311683:1
position: 311683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:312372-312411:1:exon

position:312372:1
position: 312372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:312411:1
position: 312411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:313254-313376:1:exon

position:313254:1
position: 313254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:313376:1
position: 313376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:316180-316260:1:exon

position:316180:1
position: 316180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:316260:1
position: 316260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:317153-317263:1:exon

position:317153:1
position: 317153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:317263:1
position: 317263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:318219-318341:1:exon

position:318219:1
position: 318219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:318341:1
position: 318341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:318814-318963:1:exon

position:318814:1
position: 318814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:318963:1
position: 318963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:319190-319500:1:exon

position:319190:1
position: 319190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:319500:1
position: 319500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:320405-322066:1:exon

position:320405:1
position: 320405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:322066:1
position: 322066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:322636-322717:1:exon

position:322636:1
position: 322636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:322717:1
position: 322717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:323646-323858:1:exon

position:323646:1
position: 323646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:323858:1
position: 323858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:328012-328124:1:exon

position:328012:1
position: 328012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:328124:1
position: 328124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:328518-328675:1:exon

position:328518:1
position: 328518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:328675:1
position: 328675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:329143-329366:1:exon

position:329143:1
position: 329143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:329366:1
position: 329366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:329777-329893:1:exon

position:329777:1
position: 329777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:329893:1
position: 329893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:330316-330504:1:exon

position:330316:1
position: 330316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:330504:1
position: 330504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:331398-331445:1:exon

position:331398:1
position: 331398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:331445:1
position: 331445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:332075-332186:1:exon

position:332075:1
position: 332075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:332186:1
position: 332186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 35
SIO_000628: feature:333061-333122:1:exon

position:333061:1
position: 333061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:333122:1
position: 333122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 36
SIO_000628: feature:334487-334679:1:exon

position:334487:1
position: 334487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:334679:1
position: 334679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 37
SIO_000628: feature:335116-335244:1:exon

position:335116:1
position: 335116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:335244:1
position: 335244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 38
SIO_000628: feature:335580-335685:1:exon

position:335580:1
position: 335580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:335685:1
position: 335685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 39
SIO_000628: feature:336161-336292:1:exon

position:336161:1
position: 336161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:336292:1
position: 336292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 40
SIO_000628: feature:337383-337506:1:exon

position:337383:1
position: 337383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:337506:1
position: 337506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 41
SIO_000628: feature:340208-340410:1:exon

position:340208:1
position: 340208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:340410:1
position: 340410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 42
SIO_000628: feature:340592-340734:1:exon

position:340592:1
position: 340592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:340734:1
position: 340734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 43
SIO_000628: feature:341145-341773:1:exon

position:341145:1
position: 341145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MYO9A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: MYO9A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: unconventional myosin-IXa
translation: MSVNDVGGRRRLEDSEYTLHIYPGSIVEGTIYCPITARKTSTAAEVIDSLINKLQLEKTKCYVLAEVKEFGGEEWILNPTDCPVQRMMLWPRMALENRISGEDYRFLLREKNLDGSIHYGSLQSWLRVTEERRRMVERGFLPQPQQKDYDDLCGLPDLNEKTLLENLRNRFKQEKIYTYVGSILIVINPFKFLPIYNPKYVKMYDNHQLGKLEPHIYAVADVAYHAMLQRRKNQCIVISGESGSGKTQSTNFLIHHLTALSQKGFASGVEQIILGAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYQETGTVRGAYVEKYLLEKSRLVYQEHNERNYHVFYYLLAGASEEERSAFHLKQPEEYHYLNQMTKKPLKQSWDDYCYDSEPDCFSVEGEDLKHDFERLQLAMEMVGFLPKTRRQIFSLLSAILHLGNIQYKKKTYRDDSIDICNPEILPIVSDLLEVREEMLFEALVTRKTVTVGEKLILPYKLAEAVTVRNSMAKSLYSALFDWIVFRINHALLNSKDMEENTKTLSIGVLDIFGFEDYENNSFEQFCINFANERLQHYFNQHIFKLEQEEYRAEGISWHNIDYIDNSSCINLISKKPTGLLHLLDEESNFPQATNQTLLDKFKRQHEGNSYIEFPAVMEPAFIIKHYAGKVKYGVKDFREKNTDHMRPDIVALLRSSRNAFICGMIGIDPVAVFRWAVLRAFFRAMVAFREAGKRYVEKKTGHDDAVPCAVLKSVDSFSFLHHPVHQRSLEILQRCKEEKYSITRKSPRTPLSDLQGVNTINERTQRDAYGVGWNSRMGMRHSRITSPSTFLDKDGIFVNVTNSKLLERAHGILMRNKNFKAKPNLPKHMLDVKSLKHLTNLTLHDRITKSLLHLHKKKKPPSISAQFQASLNKLMETLGQAEPYFVKCIRSNAEKLPLRFSDSLVLRQLRYTGMLETVRIRQSGYSCKYSFQDFVNHFHVLLPQGISPSRNNIHDFFQKIKLDPDNYQVGRTMVFMKERERQVLQDLLHQEVLRRITLLQRWFRSVLCRRQFLTLREATLIIQRYWRNYRSRKQGEPSLDPLVLSKAAVVLQTRWRGFVERRRFLQMQLAAHLIQSCWREYARRRHGAATSIQAAWRGHRAKQSYATGRSKVVGLQAACRGYLARQRFRALKDQRLKEMQLENGLSVGEEDGPEADGTLEIKGSDPSKWEDGSFEERVRAIEEHKSLMENNRVNHVDPLDTSANLLYKRHERASSQSGMDTEEEVVVRERPKSLEDLNQKKVVRAKRESRRMRELEQAKFSLELLKVRSTGGLSPSEERRWSTDLVSEALHSPQGTPESESSQGSFEMLSCEDTPSNKLISVVFSEQDVQSLSTDSWPSSPQAHLQEKPFCVADVNSNLPACRKMLADTELPDNLTIKEHLVCDPQDVVTPKVQPRETFHASNLPTFYIPPQEDAKVKVKLTENNLSNKAVQREERTVIFSQMREDSEPDQGRALGGGEKEDKSSIKRDSGTVTAPQGHSPDSVIKRLEKLNVEKEERQKQLQLQNEREMMEQIRQQKEILERQRKAFEQQGKVEALQKAEQNRMKDTSLKPTKKPDSRPQSVLILHPQSRGEHAPTMGGTPASSVDIKGLTVGTRGSSPAHSAPKDRPVSMFMERRESQLVSMVEPRCHSRPALDPKDLPGSHFTRTERLRQPRTPNQSTEETRTSGIFFTPKDNPFGLHGEASHQCPSKTELARKPFKMPGSGRGEVPRPTHKKKARMARTRSDFLTRGTFADGEGDTEEDDYDGSFEFLLSSDQPPHPEAVPAARLGQACYSDSEMTAQRFASGEGQTKLHKTMSQGEIGKLVATQKSLAPDGRPQRAKMRFWAKGKQGEKKTPREKLATQSELLELYAEPEAPSREVISGLQLGEELGPHHLTPPRSPELSGIYRREFKENKEPSPKVKRKRSVKISNVALEPVQWQNDSLQIITSASDLKSMDEFLLKKMNELDNEDSKKDTLVDVVFKKALKEFRQ…
SIO_010081: MYO9A
subclass of: SO_0000673
so part of: MYO9A
location: join(206645..207487,236590..236684,240472..240534,241807..241906,244513..244569,247924..248021,250254..250380,257360..257449,274869..274985,283315..283449,295510..295631,296849..296990,297777..297972,301887..302006,306424..306499,311540..311683,312372..312411,313254..313376,316180..316260,317153..317263,318219..318341,318814..318963,319190..319500,320405..322066,322636..322717,323646..323858,328012..328124,328518..328675,329143..329366,329777..329893,330316..330504,331398..331445,332075..332186,333061..333122,334487..334679,335116..335244,335580..335685,336161..336292,337383..337506,340208..340410,340592..340734,341145..341620)
location: region:206645-341620:1
so has part: feature:206645-207487:1:exon
so has part: feature:236590-236684:1:exon
so has part: feature:240472-240534:1:exon
so has part: feature:241807-241906:1:exon
so has part: feature:244513-244569:1:exon
so has part: feature:247924-248021:1:exon
so has part: feature:250254-250380:1:exon
so has part: feature:257360-257449:1:exon
so has part: feature:274869-274985:1:exon
so has part: feature:283315-283449:1:exon
so has part: feature:295510-295631:1:exon
so has part: feature:296849-296990:1:exon
so has part: feature:297777-297972:1:exon
so has part: feature:301887-302006:1:exon
so has part: feature:306424-306499:1:exon
so has part: feature:311540-311683:1:exon
so has part: feature:312372-312411:1:exon
so has part: feature:313254-313376:1:exon
so has part: feature:316180-316260:1:exon
so has part: feature:317153-317263:1:exon
so has part: feature:318219-318341:1:exon
so has part: feature:318814-318963:1:exon
so has part: feature:319190-319500:1:exon
so has part: feature:320405-322066:1:exon
so has part: feature:322636-322717:1:exon
so has part: feature:323646-323858:1:exon
so has part: feature:328012-328124:1:exon
so has part: feature:328518-328675:1:exon
so has part: feature:329143-329366:1:exon
so has part: feature:329777-329893:1:exon
so has part: feature:330316-330504:1:exon
so has part: feature:331398-331445:1:exon
so has part: feature:332075-332186:1:exon
so has part: feature:333061-333122:1:exon
so has part: feature:334487-334679:1:exon
so has part: feature:335116-335244:1:exon
so has part: feature:335580-335685:1:exon
so has part: feature:336161-336292:1:exon
so has part: feature:337383-337506:1:exon
so has part: feature:340208-340410:1:exon
so has part: feature:340592-340734:1:exon
so has part: feature:341145-341620:1:exon

XP_030312980.1
type: Protein
SIO_000068: ncbiprotein

position:206645:1
position: 206645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:341620:1
position: 341620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:206645-207487:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:236590-236684:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:240472-240534:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:241807-241906:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:244513-244569:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:247924-248021:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:250254-250380:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:257360-257449:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:274869-274985:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:283315-283449:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:295510-295631:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:296849-296990:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:297777-297972:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:301887-302006:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:306424-306499:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:311540-311683:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:312372-312411:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:313254-313376:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:316180-316260:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:317153-317263:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:318219-318341:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:318814-318963:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:319190-319500:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:320405-322066:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:322636-322717:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:323646-323858:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:328012-328124:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:328518-328675:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:329143-329366:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:329777-329893:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:330316-330504:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:331398-331445:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:332075-332186:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:333061-333122:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:334487-334679:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:335116-335244:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:335580-335685:1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:336161-336292:1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:337383-337506:1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:340208-340410:1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:340592-340734:1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:341145-341620:1:exon

NR2E3
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: NR2E3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(345910..348954)
location: region:345910-348954:-1
so has part: feature:345910-348954:-1:exon
subclass of: SO_0000010

103539211
type: Gene
SIO_000068: ncbigene

position:345910:-1
position: 345910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:348954:-1
position: 348954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:345910-348954:-1:exon

NR2E3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: NR2E3
product: nuclear receptor subfamily 2 group E member 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 7% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_008505737.1
SIO_010081: NR2E3
subclass of: SO_0000673
so part of: NR2E3
location: complement(join(345910..346042,346119..346224,346301..346532,346726..346907,346993..347247,347324..347427,347891..348041,348897..348954))
location: region:345910-348954:-1
so has part: feature:348897-348954:-1:exon
so has part: feature:347891-348041:-1:exon
so has part: feature:347324-347427:-1:exon
so has part: feature:346993-347247:-1:exon
so has part: feature:346726-346907:-1:exon
so has part: feature:346301-346532:-1:exon
so has part: feature:346119-346224:-1:exon
so has part: feature:345910-346042:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:348897-348954:-1:exon

position:348897:-1
position: 348897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:347891-348041:-1:exon

position:347891:-1
position: 347891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:348041:-1
position: 348041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:347324-347427:-1:exon

position:347324:-1
position: 347324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:347427:-1
position: 347427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:346993-347247:-1:exon

position:346993:-1
position: 346993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:347247:-1
position: 347247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:346726-346907:-1:exon

position:346726:-1
position: 346726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:346907:-1
position: 346907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:346301-346532:-1:exon

position:346301:-1
position: 346301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:346532:-1
position: 346532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:346119-346224:-1:exon

position:346119:-1
position: 346119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:346224:-1
position: 346224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:345910-346042:-1:exon

position:346042:-1
position: 346042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NR2E3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: NR2E3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: photoreceptor-specific nuclear receptor
translation: MAASPAGSVVSTGLGDSPTGLSPAPGKALSPVLLCKVCGDTSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAGTGLCPVDKAHRNQCQACRLKKCLQAGMNKDAVQNERQPRSMAQVRLDSIELDAELPPEHVATTREVPPSPCPAPRGPGATVTTTPGPRAPTPPTNHRFMASLMTAETCAKLEPEDADETVDVTGSEPERAASEYQVAPYPAAGPENIYETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSMPLESCPLLAVPEPVPGKLLPASLDIRALQETLGRFKALAVDPTEFACMKAVVLFKPETRGLKDPEQVENLQDQSQVMLGQHNRSHYPGQPVRFGKLLLLLPALRFISSERVELLFFRRTIGNTPMEKLLCDMFKN
SIO_010081: NR2E3
subclass of: SO_0000673
so part of: NR2E3
location: complement(join(345910..346042,346119..346224,346301..346532,346726..346907,346993..347247,347324..347427,347891..348041,348897..348954))
location: region:345910-348954:-1
so has part: feature:348897-348954:-1:exon
so has part: feature:347891-348041:-1:exon
so has part: feature:347324-347427:-1:exon
so has part: feature:346993-347247:-1:exon
so has part: feature:346726-346907:-1:exon
so has part: feature:346301-346532:-1:exon
so has part: feature:346119-346224:-1:exon
so has part: feature:345910-346042:-1:exon

XP_008503959.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:348897-348954:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:347891-348041:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:347324-347427:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:346993-347247:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:346726-346907:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:346301-346532:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:346119-346224:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:345910-346042:-1:exon

LOC103525862
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: LOC103525862
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 351472..354088
location: region:351472-354088:1
so has part: feature:351472-354088:1:exon
subclass of: SO_0000010

103525862
type: Gene
SIO_000068: ncbigene

position:351472:1
position: 351472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:354088:1
position: 354088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:351472-354088:1:exon

LOC103525862
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: LOC103525862
product: uncharacterized LOC103525862
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 41% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030457170.1
SIO_010081: LOC103525862
subclass of: SO_0000673
so part of: LOC103525862
location: join(351472..351531,353008..353091,353182..353235,353454..353655,353736..353968,354041..354088)
location: region:351472-354088:1
so has part: feature:351472-351531:1:exon
so has part: feature:353008-353091:1:exon
so has part: feature:353182-353235:1:exon
so has part: feature:353454-353655:1:exon
so has part: feature:353736-353968:1:exon
so has part: feature:354041-354088:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:351472-351531:1:exon

position:351531:1
position: 351531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:353008-353091:1:exon

position:353008:1
position: 353008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:353091:1
position: 353091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:353182-353235:1:exon

position:353182:1
position: 353182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:353235:1
position: 353235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:353454-353655:1:exon

position:353454:1
position: 353454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:353655:1
position: 353655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:353736-353968:1:exon

position:353736:1
position: 353736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:353968:1
position: 353968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:354041-354088:1:exon

position:354041:1
position: 354041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC103525862
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: LOC103525862
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC103525862
translation: MRTRRRHWDTTQVDEDHEGIVSTLVQTLGTPDGPFLQPFRWLRSWVRQCHWGDAEYLPLQVSASRQAAAGVASTAAFFLCEGLLGQHFDVVPNGVAEPQPGDLFLFPLASGGPSWWCAHTGVYCGDGEIIHLEGSSGMSPSGIVAKHSKSHLLRTRGPAKVLRRKGGMDAAALRRRIRVAMDQELEYDAVTCNCVHFALALLGLGHLAGAMVSPALQ
SIO_010081: LOC103525862
subclass of: SO_0000673
so part of: LOC103525862
location: join(351472..351531,353008..353091,353182..353235,353454..353655,353736..353968,354041..354061)
location: region:351472-354061:1
so has part: feature:351472-351531:1:exon
so has part: feature:353008-353091:1:exon
so has part: feature:353182-353235:1:exon
so has part: feature:353454-353655:1:exon
so has part: feature:353736-353968:1:exon
so has part: feature:354041-354061:1:exon

XP_030313030.1
type: Protein
SIO_000068: ncbiprotein

position:354061:1
position: 354061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:351472-351531:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:353008-353091:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:353182-353235:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:353454-353655:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:353736-353968:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:354041-354061:1:exon

AP3B2
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: AP3B2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 360045..370829
location: region:360045-370829:1
so has part: feature:360045-370829:1:exon
subclass of: SO_0000010

103539109
type: Gene
SIO_000068: ncbigene

position:360045:1
position: 360045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:370829:1
position: 370829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:360045-370829:1:exon

AP3B2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: AP3B2
product: adaptor related protein complex 3 subunit beta 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 4 long SRA reads, 5 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_008505623.2
SIO_010081: AP3B2
subclass of: SO_0000673
so part of: AP3B2
location: join(360045..360203,362472..362547,362645..362719,362846..362941,363034..363194,363294..363360,363624..363806,363922..364098,364335..364432,364627..364681,364831..364902,365071..365133,365320..365452,365536..365645,365723..365899,365984..366170,366272..366390,366617..366728,367132..367348,367421..367586,367669..367723,368014..368120,368228..368459,368559..368643,369228..369325,370005..370143,370375..370829)
location: region:360045-370829:1
so has part: feature:360045-360203:1:exon
so has part: feature:362472-362547:1:exon
so has part: feature:362645-362719:1:exon
so has part: feature:362846-362941:1:exon
so has part: feature:363034-363194:1:exon
so has part: feature:363294-363360:1:exon
so has part: feature:363624-363806:1:exon
so has part: feature:363922-364098:1:exon
so has part: feature:364335-364432:1:exon
so has part: feature:364627-364681:1:exon
so has part: feature:364831-364902:1:exon
so has part: feature:365071-365133:1:exon
so has part: feature:365320-365452:1:exon
so has part: feature:365536-365645:1:exon
so has part: feature:365723-365899:1:exon
so has part: feature:365984-366170:1:exon
so has part: feature:366272-366390:1:exon
so has part: feature:366617-366728:1:exon
so has part: feature:367132-367348:1:exon
so has part: feature:367421-367586:1:exon
so has part: feature:367669-367723:1:exon
so has part: feature:368014-368120:1:exon
so has part: feature:368228-368459:1:exon
so has part: feature:368559-368643:1:exon
so has part: feature:369228-369325:1:exon
so has part: feature:370005-370143:1:exon
so has part: feature:370375-370829:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:360045-360203:1:exon

position:360203:1
position: 360203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:362472-362547:1:exon

position:362472:1
position: 362472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:362547:1
position: 362547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:362645-362719:1:exon

position:362645:1
position: 362645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:362719:1
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reference: sequence
type: ForwardStrandPosition
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urn:…
SIO_000300: 4
SIO_000628: feature:362846-362941:1:exon

position:362846:1
position: 362846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:362941:1
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reference: sequence
type: ForwardStrandPosition
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urn:…
SIO_000300: 5
SIO_000628: feature:363034-363194:1:exon

position:363034:1
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reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:363194:1
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reference: sequence
type: ForwardStrandPosition
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urn:…
SIO_000300: 6
SIO_000628: feature:363294-363360:1:exon

position:363294:1
position: 363294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:363360:1
position: 363360
reference: sequence
type: ForwardStrandPosition
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urn:…
SIO_000300: 7
SIO_000628: feature:363624-363806:1:exon

position:363624:1
position: 363624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:363806:1
position: 363806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:363922-364098:1:exon

position:363922:1
position: 363922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:364098:1
position: 364098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:364335-364432:1:exon

position:364335:1
position: 364335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:364432:1
position: 364432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:364627-364681:1:exon

position:364627:1
position: 364627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:364681:1
position: 364681
reference: sequence
type: ForwardStrandPosition
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urn:…
SIO_000300: 11
SIO_000628: feature:364831-364902:1:exon

position:364831:1
position: 364831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:364902:1
position: 364902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:365071-365133:1:exon

position:365071:1
position: 365071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:365133:1
position: 365133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:365320-365452:1:exon

position:365320:1
position: 365320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:365452:1
position: 365452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:365536-365645:1:exon

position:365536:1
position: 365536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:365645:1
position: 365645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:365723-365899:1:exon

position:365723:1
position: 365723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:365899:1
position: 365899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:365984-366170:1:exon

position:365984:1
position: 365984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:366170:1
position: 366170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:366272-366390:1:exon

position:366272:1
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reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:366390:1
position: 366390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:366617-366728:1:exon

position:366617:1
position: 366617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:366728:1
position: 366728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:367132-367348:1:exon

position:367132:1
position: 367132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:367348:1
position: 367348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:367421-367586:1:exon

position:367421:1
position: 367421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:367586:1
position: 367586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:367669-367723:1:exon

position:367669:1
position: 367669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:367723:1
position: 367723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:368014-368120:1:exon

position:368014:1
position: 368014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:368120:1
position: 368120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:368228-368459:1:exon

position:368228:1
position: 368228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:368459:1
position: 368459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:368559-368643:1:exon

position:368559:1
position: 368559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:368643:1
position: 368643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:369228-369325:1:exon

position:369228:1
position: 369228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:369325:1
position: 369325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:370005-370143:1:exon

position:370005:1
position: 370005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:370143:1
position: 370143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:370375-370829:1:exon

position:370375:1
position: 370375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AP3B2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: AP3B2
product: adaptor related protein complex 3 subunit beta 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030457379.1
SIO_010081: AP3B2
subclass of: SO_0000673
so part of: AP3B2
location: join(360086..360203,362472..362547,362645..362719,362846..362941,363034..363194,363294..363360,363624..363806,363922..364098,364335..364432,364627..364681,364831..364902,365071..365133,365320..365452,365536..365645,365723..365899,365984..366170,366272..366390,366617..366728,367132..367348,367421..367586,367669..367723,368014..368120,368228..368459,369228..369325,370005..370088)
location: region:360086-370088:1
so has part: feature:360086-360203:1:exon
so has part: feature:362472-362547:1:exon
so has part: feature:362645-362719:1:exon
so has part: feature:362846-362941:1:exon
so has part: feature:363034-363194:1:exon
so has part: feature:363294-363360:1:exon
so has part: feature:363624-363806:1:exon
so has part: feature:363922-364098:1:exon
so has part: feature:364335-364432:1:exon
so has part: feature:364627-364681:1:exon
so has part: feature:364831-364902:1:exon
so has part: feature:365071-365133:1:exon
so has part: feature:365320-365452:1:exon
so has part: feature:365536-365645:1:exon
so has part: feature:365723-365899:1:exon
so has part: feature:365984-366170:1:exon
so has part: feature:366272-366390:1:exon
so has part: feature:366617-366728:1:exon
so has part: feature:367132-367348:1:exon
so has part: feature:367421-367586:1:exon
so has part: feature:367669-367723:1:exon
so has part: feature:368014-368120:1:exon
so has part: feature:368228-368459:1:exon
so has part: feature:369228-369325:1:exon
so has part: feature:370005-370088:1:exon

position:360086:1
position: 360086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:370088:1
position: 370088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:360086-360203:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:362472-362547:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:362645-362719:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:362846-362941:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:363034-363194:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:363294-363360:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:363624-363806:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:363922-364098:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:364335-364432:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:364627-364681:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:364831-364902:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:365071-365133:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:365320-365452:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:365536-365645:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:365723-365899:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:365984-366170:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:366272-366390:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:366617-366728:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:367132-367348:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:367421-367586:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:367669-367723:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:368014-368120:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:368228-368459:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:369228-369325:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:370005-370088:1:exon

AP3B2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: AP3B2
product: adaptor related protein complex 3 subunit beta 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030457380.1
SIO_010081: AP3B2
subclass of: SO_0000673
so part of: AP3B2
location: join(360086..360203,362472..362547,362645..362719,362846..362941,363034..363194,363294..363360,363624..363806,363922..364098,364335..364432,364627..364681,364831..364902,365071..365133,365320..365452,365536..365645,365723..365899,365984..366170,366272..366390,366617..366728,367132..367348,367421..367586,367669..367723,368014..368120,368228..368459,368545..368643,369228..369315)
location: region:360086-369315:1
so has part: feature:360086-360203:1:exon
so has part: feature:362472-362547:1:exon
so has part: feature:362645-362719:1:exon
so has part: feature:362846-362941:1:exon
so has part: feature:363034-363194:1:exon
so has part: feature:363294-363360:1:exon
so has part: feature:363624-363806:1:exon
so has part: feature:363922-364098:1:exon
so has part: feature:364335-364432:1:exon
so has part: feature:364627-364681:1:exon
so has part: feature:364831-364902:1:exon
so has part: feature:365071-365133:1:exon
so has part: feature:365320-365452:1:exon
so has part: feature:365536-365645:1:exon
so has part: feature:365723-365899:1:exon
so has part: feature:365984-366170:1:exon
so has part: feature:366272-366390:1:exon
so has part: feature:366617-366728:1:exon
so has part: feature:367132-367348:1:exon
so has part: feature:367421-367586:1:exon
so has part: feature:367669-367723:1:exon
so has part: feature:368014-368120:1:exon
so has part: feature:368228-368459:1:exon
so has part: feature:368545-368643:1:exon
so has part: feature:369228-369315:1:exon

position:369315:1
position: 369315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:360086-360203:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:362472-362547:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:362645-362719:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:362846-362941:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:363034-363194:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:363294-363360:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:363624-363806:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:363922-364098:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:364335-364432:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:364627-364681:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:364831-364902:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:365071-365133:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:365320-365452:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:365536-365645:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:365723-365899:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:365984-366170:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:366272-366390:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:366617-366728:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:367132-367348:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:367421-367586:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:367669-367723:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:368014-368120:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:368228-368459:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:368545-368643:1:exon

position:368545:1
position: 368545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:369228-369315:1:exon

AP3B2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: AP3B2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: AP-3 complex subunit beta-2 isoform X2
translation: MAASPAYGEEKGGSSSLGEPEYGHDPASGGIFSSDYKRHDDLKEMLDSNKDSLKLEAMKRIVAMIARGKNASDLFPAVVKNVACKNIEVKKLVYVYLVRYAEEQQDLALLSISTFQRGLKDPNQLIRASALRVLSSIRVPIIVPIMMLAIKEAASDMSPYVRKTAAHAIPKLYSLDSDQKDQLIEVIEKLLADKTTLVAGSVVMAFEEVCPERIDLIHKNYRKLCNLLIDVEEWGQVVIINMLTRYARTQFLSPNQNESLLEESAEKAFYGSEEEDAKDAKAEAASLAKRKPYVMDPDHRLLLRNTKPLLQSRNAAVVMAVAQLYFHLAPKAEVGVIAKALVRLLRSHSEVQYVVLQNVATMSIKRRGMFEPYLKSFYIRSTDPTQIKILKLEVLTNLANETNISTILREFQTYIRSMDKDFVAATIQAIGRCATNIGKVRDTCLNGLVQLLSNRDELVVAESVVVIKKLLQMQPAQHSEIIKHMAKLTDNIQVPMARASILWLIGEYCEHVPKIAPDVLRKMAKSFTNEEDIVKLQVINLAAKLYLTNSKQSKLLTQYVLNLAKYDQNYDIRDRARFIRQLIVPTEKSGALNKYAKKLFLAQKPAPILESSFKDRDHFQLGSLSHLLNAKAVGYQELPDWPDEAPDPSVRNVEVPEWTKCTSREKRKEKVEKPFYSDSEGESGPTESADSEPESSSEESGSSSSSGSSSSGSEEEEEEEEEEEEGSREQSEDKEEEEEEEEEKRNKRKAKEGSQKAALGSMGSPSEEEEGGGRKAKKKAASQGRKSHAETSSEEASASESSSSGSDSGSEAEAKRRKTPPSSRAGPKEISLLDLDDFTPPPPQPVPSSSIVSTSLVTDLEGLTLTDTSLAPALLSPAFGAVRTYELLHRMAGEGLSVEYCFSRRPFPGDPHMVAVQIQISNNTDAEVKSLRVSEPKPLSGMRIQEFPEIERLAPGDTASVVMGIDFCDSTQAANFQLCTHTRHFYVSIQPPVGELMAPVFMSENEFKKEQGKLMGMSEITEKLTLSEKCCSDHTIVQQVTSAANVGRVPCGADNEYRFAAKTVTSGSLVLITLERRQGAAAQLTVNSEKMVIGTMLVKDIVQALAQ
SIO_010081: AP3B2
subclass of: SO_0000673
so part of: AP3B2
location: join(360091..360203,362472..362547,362645..362719,362846..362941,363034..363194,363294..363360,363624..363806,363922..364098,364335..364432,364627..364681,364831..364902,365071..365133,365320..365452,365536..365645,365723..365899,365984..366170,366272..366390,366617..366728,367132..367348,367421..367586,367669..367723,368014..368120,368228..368459,368559..368643,369228..369325,370005..370143,370375..370525)
location: region:360091-370525:1
so has part: feature:360091-360203:1:exon
so has part: feature:362472-362547:1:exon
so has part: feature:362645-362719:1:exon
so has part: feature:362846-362941:1:exon
so has part: feature:363034-363194:1:exon
so has part: feature:363294-363360:1:exon
so has part: feature:363624-363806:1:exon
so has part: feature:363922-364098:1:exon
so has part: feature:364335-364432:1:exon
so has part: feature:364627-364681:1:exon
so has part: feature:364831-364902:1:exon
so has part: feature:365071-365133:1:exon
so has part: feature:365320-365452:1:exon
so has part: feature:365536-365645:1:exon
so has part: feature:365723-365899:1:exon
so has part: feature:365984-366170:1:exon
so has part: feature:366272-366390:1:exon
so has part: feature:366617-366728:1:exon
so has part: feature:367132-367348:1:exon
so has part: feature:367421-367586:1:exon
so has part: feature:367669-367723:1:exon
so has part: feature:368014-368120:1:exon
so has part: feature:368228-368459:1:exon
so has part: feature:368559-368643:1:exon
so has part: feature:369228-369325:1:exon
so has part: feature:370005-370143:1:exon
so has part: feature:370375-370525:1:exon

XP_008503845.1
type: Protein
SIO_000068: ncbiprotein

position:360091:1
position: 360091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:370525:1
position: 370525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:360091-360203:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:362472-362547:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:362645-362719:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:362846-362941:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:363034-363194:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:363294-363360:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:363624-363806:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:363922-364098:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:364335-364432:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:364627-364681:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:364831-364902:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:365071-365133:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:365320-365452:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:365536-365645:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:365723-365899:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:365984-366170:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:366272-366390:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:366617-366728:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:367132-367348:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:367421-367586:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:367669-367723:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:368014-368120:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:368228-368459:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:368559-368643:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:369228-369325:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:370005-370143:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:370375-370525:1:exon

AP3B2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: AP3B2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: AP-3 complex subunit beta-2 isoform X3
translation: MAASPAYGEEKGGSSSLGEPEYGHDPASGGIFSSDYKRHDDLKEMLDSNKDSLKLEAMKRIVAMIARGKNASDLFPAVVKNVACKNIEVKKLVYVYLVRYAEEQQDLALLSISTFQRGLKDPNQLIRASALRVLSSIRVPIIVPIMMLAIKEAASDMSPYVRKTAAHAIPKLYSLDSDQKDQLIEVIEKLLADKTTLVAGSVVMAFEEVCPERIDLIHKNYRKLCNLLIDVEEWGQVVIINMLTRYARTQFLSPNQNESLLEESAEKAFYGSEEEDAKDAKAEAASLAKRKPYVMDPDHRLLLRNTKPLLQSRNAAVVMAVAQLYFHLAPKAEVGVIAKALVRLLRSHSEVQYVVLQNVATMSIKRRGMFEPYLKSFYIRSTDPTQIKILKLEVLTNLANETNISTILREFQTYIRSMDKDFVAATIQAIGRCATNIGKVRDTCLNGLVQLLSNRDELVVAESVVVIKKLLQMQPAQHSEIIKHMAKLTDNIQVPMARASILWLIGEYCEHVPKIAPDVLRKMAKSFTNEEDIVKLQVINLAAKLYLTNSKQSKLLTQYVLNLAKYDQNYDIRDRARFIRQLIVPTEKSGALNKYAKKLFLAQKPAPILESSFKDRDHFQLGSLSHLLNAKAVGYQELPDWPDEAPDPSVRNVEVPEWTKCTSREKRKEKVEKPFYSDSEGESGPTESADSEPESSSEESGSSSSSGSSSSGSEEEEEEEEEEEEGSREQSEDKEEEEEEEEEKRNKRKAKEGSQKAALGSMGSPSEEEEGGGRKAKKKAASQGRKSHAETSSEEASASESSSSGSDSGSEAEAKRRKTPPSSRAGPKEISLLDLDDFTPPPPQPVPSSSIVSTSLVTDLEGLTLTDTSLAPALLSPAFGAVRTYELLHRMAGEGLSVEYCFSRRPFPGDPHMVAVQIQISNNTDAEVKSLRVSEPKPLSGMRIQEFPEIAPTHATSTSPFSRPWGSSWPLSS
SIO_010081: AP3B2
subclass of: SO_0000673
so part of: AP3B2
location: join(360091..360203,362472..362547,362645..362719,362846..362941,363034..363194,363294..363360,363624..363806,363922..364098,364335..364432,364627..364681,364831..364902,365071..365133,365320..365452,365536..365645,365723..365899,365984..366170,366272..366390,366617..366728,367132..367348,367421..367586,367669..367723,368014..368120,368228..368459,369228..369298)
location: region:360091-369298:1
so has part: feature:360091-360203:1:exon
so has part: feature:362472-362547:1:exon
so has part: feature:362645-362719:1:exon
so has part: feature:362846-362941:1:exon
so has part: feature:363034-363194:1:exon
so has part: feature:363294-363360:1:exon
so has part: feature:363624-363806:1:exon
so has part: feature:363922-364098:1:exon
so has part: feature:364335-364432:1:exon
so has part: feature:364627-364681:1:exon
so has part: feature:364831-364902:1:exon
so has part: feature:365071-365133:1:exon
so has part: feature:365320-365452:1:exon
so has part: feature:365536-365645:1:exon
so has part: feature:365723-365899:1:exon
so has part: feature:365984-366170:1:exon
so has part: feature:366272-366390:1:exon
so has part: feature:366617-366728:1:exon
so has part: feature:367132-367348:1:exon
so has part: feature:367421-367586:1:exon
so has part: feature:367669-367723:1:exon
so has part: feature:368014-368120:1:exon
so has part: feature:368228-368459:1:exon
so has part: feature:369228-369298:1:exon

XP_030313239.1
type: Protein
SIO_000068: ncbiprotein

position:369298:1
position: 369298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:360091-360203:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:362472-362547:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:362645-362719:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:362846-362941:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:363034-363194:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:363294-363360:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:363624-363806:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:363922-364098:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:364335-364432:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:364627-364681:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:364831-364902:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:365071-365133:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:365320-365452:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:365536-365645:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:365723-365899:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:365984-366170:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:366272-366390:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:366617-366728:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:367132-367348:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:367421-367586:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:367669-367723:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:368014-368120:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:368228-368459:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:369228-369298:1:exon

AP3B2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: AP3B2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: AP-3 complex subunit beta-2 isoform X4
translation: MAASPAYGEEKGGSSSLGEPEYGHDPASGGIFSSDYKRHDDLKEMLDSNKDSLKLEAMKRIVAMIARGKNASDLFPAVVKNVACKNIEVKKLVYVYLVRYAEEQQDLALLSISTFQRGLKDPNQLIRASALRVLSSIRVPIIVPIMMLAIKEAASDMSPYVRKTAAHAIPKLYSLDSDQKDQLIEVIEKLLADKTTLVAGSVVMAFEEVCPERIDLIHKNYRKLCNLLIDVEEWGQVVIINMLTRYARTQFLSPNQNESLLEESAEKAFYGSEEEDAKDAKAEAASLAKRKPYVMDPDHRLLLRNTKPLLQSRNAAVVMAVAQLYFHLAPKAEVGVIAKALVRLLRSHSEVQYVVLQNVATMSIKRRGMFEPYLKSFYIRSTDPTQIKILKLEVLTNLANETNISTILREFQTYIRSMDKDFVAATIQAIGRCATNIGKVRDTCLNGLVQLLSNRDELVVAESVVVIKKLLQMQPAQHSEIIKHMAKLTDNIQVPMARASILWLIGEYCEHVPKIAPDVLRKMAKSFTNEEDIVKLQVINLAAKLYLTNSKQSKLLTQYVLNLAKYDQNYDIRDRARFIRQLIVPTEKSGALNKYAKKLFLAQKPAPILESSFKDRDHFQLGSLSHLLNAKAVGYQELPDWPDEAPDPSVRNVEVPEWTKCTSREKRKEKVEKPFYSDSEGESGPTESADSEPESSSEESGSSSSSGSSSSGSEEEEEEEEEEEEGSREQSEDKEEEEEEEEEKRNKRKAKEGSQKAALGSMGSPSEEEEGGGRKAKKKAASQGRKSHAETSSEEASASESSSSGSDSGSEAEAKRRKTPPSSRAGPKEISLLDLDDFTPPPPQPVPSSSIVSTSLVTDLEGLTLTDTSLAPALLSPAFGAVRTYELLHRMAGEGLSVEYCFSRRPFPGDPHMVAVQIQISNNTDAEVKSLRVSEPKPLSGMRIQEFPEIAVWFQSAWHPGTQPAW
SIO_010081: AP3B2
subclass of: SO_0000673
so part of: AP3B2
location: join(360091..360203,362472..362547,362645..362719,362846..362941,363034..363194,363294..363360,363624..363806,363922..364098,364335..364432,364627..364681,364831..364902,365071..365133,365320..365452,365536..365645,365723..365899,365984..366170,366272..366390,366617..366728,367132..367348,367421..367586,367669..367723,368014..368120,368228..368459,368545..368594)
location: region:360091-368594:1
so has part: feature:360091-360203:1:exon
so has part: feature:362472-362547:1:exon
so has part: feature:362645-362719:1:exon
so has part: feature:362846-362941:1:exon
so has part: feature:363034-363194:1:exon
so has part: feature:363294-363360:1:exon
so has part: feature:363624-363806:1:exon
so has part: feature:363922-364098:1:exon
so has part: feature:364335-364432:1:exon
so has part: feature:364627-364681:1:exon
so has part: feature:364831-364902:1:exon
so has part: feature:365071-365133:1:exon
so has part: feature:365320-365452:1:exon
so has part: feature:365536-365645:1:exon
so has part: feature:365723-365899:1:exon
so has part: feature:365984-366170:1:exon
so has part: feature:366272-366390:1:exon
so has part: feature:366617-366728:1:exon
so has part: feature:367132-367348:1:exon
so has part: feature:367421-367586:1:exon
so has part: feature:367669-367723:1:exon
so has part: feature:368014-368120:1:exon
so has part: feature:368228-368459:1:exon
so has part: feature:368545-368594:1:exon

XP_030313240.1
type: Protein
SIO_000068: ncbiprotein

position:368594:1
position: 368594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:360091-360203:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:362472-362547:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:362645-362719:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:362846-362941:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:363034-363194:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:363294-363360:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:363624-363806:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:363922-364098:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:364335-364432:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:364627-364681:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:364831-364902:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:365071-365133:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:365320-365452:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:365536-365645:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:365723-365899:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:365984-366170:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:366272-366390:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:366617-366728:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:367132-367348:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:367421-367586:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:367669-367723:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:368014-368120:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:368228-368459:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:368545-368594:1:exon

AP3B2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: AP3B2
product: adaptor related protein complex 3 subunit beta 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 3 long SRA reads, 3 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030457378.1
SIO_010081: AP3B2
subclass of: SO_0000673
so part of: AP3B2
location: join(361641..361867,362472..362547,362645..362719,362846..362941,363034..363194,363294..363360,363624..363806,363922..364098,364335..364432,364627..364681,364831..364902,365071..365133,365320..365452,365536..365645,365723..365899,365984..366170,366272..366390,366617..366728,367132..367348,367421..367586,367669..367723,368014..368120,368228..368459,368559..368643,369228..369325,370005..370143,370375..370829)
location: region:361641-370829:1
so has part: feature:361641-361867:1:exon
so has part: feature:362472-362547:1:exon
so has part: feature:362645-362719:1:exon
so has part: feature:362846-362941:1:exon
so has part: feature:363034-363194:1:exon
so has part: feature:363294-363360:1:exon
so has part: feature:363624-363806:1:exon
so has part: feature:363922-364098:1:exon
so has part: feature:364335-364432:1:exon
so has part: feature:364627-364681:1:exon
so has part: feature:364831-364902:1:exon
so has part: feature:365071-365133:1:exon
so has part: feature:365320-365452:1:exon
so has part: feature:365536-365645:1:exon
so has part: feature:365723-365899:1:exon
so has part: feature:365984-366170:1:exon
so has part: feature:366272-366390:1:exon
so has part: feature:366617-366728:1:exon
so has part: feature:367132-367348:1:exon
so has part: feature:367421-367586:1:exon
so has part: feature:367669-367723:1:exon
so has part: feature:368014-368120:1:exon
so has part: feature:368228-368459:1:exon
so has part: feature:368559-368643:1:exon
so has part: feature:369228-369325:1:exon
so has part: feature:370005-370143:1:exon
so has part: feature:370375-370829:1:exon

position:361641:1
position: 361641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:361641-361867:1:exon

position:361867:1
position: 361867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:362472-362547:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:362645-362719:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:362846-362941:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:363034-363194:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:363294-363360:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:363624-363806:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:363922-364098:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:364335-364432:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:364627-364681:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:364831-364902:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:365071-365133:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:365320-365452:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:365536-365645:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:365723-365899:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:365984-366170:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:366272-366390:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:366617-366728:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:367132-367348:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:367421-367586:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:367669-367723:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:368014-368120:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:368228-368459:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:368559-368643:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:369228-369325:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:370005-370143:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:370375-370829:1:exon

AP3B2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: AP3B2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: AP-3 complex subunit beta-2 isoform X1
translation: MLSLPPVQKLLRQLPGGVAGQPKPPSGGDTAEEVTSPVLATEAGQPACYSALRADELRPLANPEPVVATGTRPPPRHDDLKEMLDSNKDSLKLEAMKRIVAMIARGKNASDLFPAVVKNVACKNIEVKKLVYVYLVRYAEEQQDLALLSISTFQRGLKDPNQLIRASALRVLSSIRVPIIVPIMMLAIKEAASDMSPYVRKTAAHAIPKLYSLDSDQKDQLIEVIEKLLADKTTLVAGSVVMAFEEVCPERIDLIHKNYRKLCNLLIDVEEWGQVVIINMLTRYARTQFLSPNQNESLLEESAEKAFYGSEEEDAKDAKAEAASLAKRKPYVMDPDHRLLLRNTKPLLQSRNAAVVMAVAQLYFHLAPKAEVGVIAKALVRLLRSHSEVQYVVLQNVATMSIKRRGMFEPYLKSFYIRSTDPTQIKILKLEVLTNLANETNISTILREFQTYIRSMDKDFVAATIQAIGRCATNIGKVRDTCLNGLVQLLSNRDELVVAESVVVIKKLLQMQPAQHSEIIKHMAKLTDNIQVPMARASILWLIGEYCEHVPKIAPDVLRKMAKSFTNEEDIVKLQVINLAAKLYLTNSKQSKLLTQYVLNLAKYDQNYDIRDRARFIRQLIVPTEKSGALNKYAKKLFLAQKPAPILESSFKDRDHFQLGSLSHLLNAKAVGYQELPDWPDEAPDPSVRNVEVPEWTKCTSREKRKEKVEKPFYSDSEGESGPTESADSEPESSSEESGSSSSSGSSSSGSEEEEEEEEEEEEGSREQSEDKEEEEEEEEEKRNKRKAKEGSQKAALGSMGSPSEEEEGGGRKAKKKAASQGRKSHAETSSEEASASESSSSGSDSGSEAEAKRRKTPPSSRAGPKEISLLDLDDFTPPPPQPVPSSSIVSTSLVTDLEGLTLTDTSLAPALLSPAFGAVRTYELLHRMAGEGLSVEYCFSRRPFPGDPHMVAVQIQISNNTDAEVKSLRVSEPKPLSGMRIQEFPEIERLAPGDTASVVMGIDFCDSTQAANFQLCTHTRHFYVSIQPPVGELMAPVFMSENEFKKEQGKLMGMSEITEKLTLSEKCCSDHTIVQQVTSAANVGRVPCGADNEYRFAAKTVTSGSLVLITLERRQGAAAQLTVNSEKMVIGTMLVKDIVQALAQ
SIO_010081: AP3B2
subclass of: SO_0000673
so part of: AP3B2
location: join(361641..361867,362472..362547,362645..362719,362846..362941,363034..363194,363294..363360,363624..363806,363922..364098,364335..364432,364627..364681,364831..364902,365071..365133,365320..365452,365536..365645,365723..365899,365984..366170,366272..366390,366617..366728,367132..367348,367421..367586,367669..367723,368014..368120,368228..368459,368559..368643,369228..369325,370005..370143,370375..370525)
location: region:361641-370525:1
so has part: feature:361641-361867:1:exon
so has part: feature:362472-362547:1:exon
so has part: feature:362645-362719:1:exon
so has part: feature:362846-362941:1:exon
so has part: feature:363034-363194:1:exon
so has part: feature:363294-363360:1:exon
so has part: feature:363624-363806:1:exon
so has part: feature:363922-364098:1:exon
so has part: feature:364335-364432:1:exon
so has part: feature:364627-364681:1:exon
so has part: feature:364831-364902:1:exon
so has part: feature:365071-365133:1:exon
so has part: feature:365320-365452:1:exon
so has part: feature:365536-365645:1:exon
so has part: feature:365723-365899:1:exon
so has part: feature:365984-366170:1:exon
so has part: feature:366272-366390:1:exon
so has part: feature:366617-366728:1:exon
so has part: feature:367132-367348:1:exon
so has part: feature:367421-367586:1:exon
so has part: feature:367669-367723:1:exon
so has part: feature:368014-368120:1:exon
so has part: feature:368228-368459:1:exon
so has part: feature:368559-368643:1:exon
so has part: feature:369228-369325:1:exon
so has part: feature:370005-370143:1:exon
so has part: feature:370375-370525:1:exon

XP_030313238.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:361641-361867:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:362472-362547:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:362645-362719:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:362846-362941:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:363034-363194:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:363294-363360:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:363624-363806:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:363922-364098:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:364335-364432:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:364627-364681:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:364831-364902:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:365071-365133:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:365320-365452:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:365536-365645:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:365723-365899:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:365984-366170:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:366272-366390:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:366617-366728:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:367132-367348:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:367421-367586:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:367669-367723:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:368014-368120:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:368228-368459:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:368559-368643:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:369228-369325:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:370005-370143:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:370375-370525:1:exon

AP3B2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: AP3B2
product: adaptor related protein complex 3 subunit beta 2, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 long SRA reads, 2 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030457381.1
SIO_010081: AP3B2
subclass of: SO_0000673
so part of: AP3B2
location: join(363167..363194,363624..363806,363922..364098,364335..364432,364627..364681,364831..364902,365071..365133,365320..365452,365536..365645,365723..365899,365984..366170,366272..366390,366617..366728,367132..367348,367421..367586,367669..367723,368014..368120,368228..368459,368559..368643,369228..369325,370005..370143,370375..370829)
location: region:363167-370829:1
so has part: feature:363167-363194:1:exon
so has part: feature:363624-363806:1:exon
so has part: feature:363922-364098:1:exon
so has part: feature:364335-364432:1:exon
so has part: feature:364627-364681:1:exon
so has part: feature:364831-364902:1:exon
so has part: feature:365071-365133:1:exon
so has part: feature:365320-365452:1:exon
so has part: feature:365536-365645:1:exon
so has part: feature:365723-365899:1:exon
so has part: feature:365984-366170:1:exon
so has part: feature:366272-366390:1:exon
so has part: feature:366617-366728:1:exon
so has part: feature:367132-367348:1:exon
so has part: feature:367421-367586:1:exon
so has part: feature:367669-367723:1:exon
so has part: feature:368014-368120:1:exon
so has part: feature:368228-368459:1:exon
so has part: feature:368559-368643:1:exon
so has part: feature:369228-369325:1:exon
so has part: feature:370005-370143:1:exon
so has part: feature:370375-370829:1:exon

position:363167:1
position: 363167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:363167-363194:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:363624-363806:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:363922-364098:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:364335-364432:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:364627-364681:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:364831-364902:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:365071-365133:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:365320-365452:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:365536-365645:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:365723-365899:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:365984-366170:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:366272-366390:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:366617-366728:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:367132-367348:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:367421-367586:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:367669-367723:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:368014-368120:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:368228-368459:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:368559-368643:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:369228-369325:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:370005-370143:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:370375-370829:1:exon

AP3B2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: AP3B2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: AP-3 complex subunit beta-2 isoform X5
translation: MAFEEVCPERIDLIHKNYRKLCNLLIDVEEWGQVVIINMLTRYARTQFLSPNQNESLLEESAEKAFYGSEEEDAKDAKAEAASLAKRKPYVMDPDHRLLLRNTKPLLQSRNAAVVMAVAQLYFHLAPKAEVGVIAKALVRLLRSHSEVQYVVLQNVATMSIKRRGMFEPYLKSFYIRSTDPTQIKILKLEVLTNLANETNISTILREFQTYIRSMDKDFVAATIQAIGRCATNIGKVRDTCLNGLVQLLSNRDELVVAESVVVIKKLLQMQPAQHSEIIKHMAKLTDNIQVPMARASILWLIGEYCEHVPKIAPDVLRKMAKSFTNEEDIVKLQVINLAAKLYLTNSKQSKLLTQYVLNLAKYDQNYDIRDRARFIRQLIVPTEKSGALNKYAKKLFLAQKPAPILESSFKDRDHFQLGSLSHLLNAKAVGYQELPDWPDEAPDPSVRNVEVPEWTKCTSREKRKEKVEKPFYSDSEGESGPTESADSEPESSSEESGSSSSSGSSSSGSEEEEEEEEEEEEGSREQSEDKEEEEEEEEEKRNKRKAKEGSQKAALGSMGSPSEEEEGGGRKAKKKAASQGRKSHAETSSEEASASESSSSGSDSGSEAEAKRRKTPPSSRAGPKEISLLDLDDFTPPPPQPVPSSSIVSTSLVTDLEGLTLTDTSLAPALLSPAFGAVRTYELLHRMAGEGLSVEYCFSRRPFPGDPHMVAVQIQISNNTDAEVKSLRVSEPKPLSGMRIQEFPEIERLAPGDTASVVMGIDFCDSTQAANFQLCTHTRHFYVSIQPPVGELMAPVFMSENEFKKEQGKLMGMSEITEKLTLSEKCCSDHTIVQQVTSAANVGRVPCGADNEYRFAAKTVTSGSLVLITLERRQGAAAQLTVNSEKMVIGTMLVKDIVQALAQ
SIO_010081: AP3B2
subclass of: SO_0000673
so part of: AP3B2
location: join(363645..363806,363922..364098,364335..364432,364627..364681,364831..364902,365071..365133,365320..365452,365536..365645,365723..365899,365984..366170,366272..366390,366617..366728,367132..367348,367421..367586,367669..367723,368014..368120,368228..368459,368559..368643,369228..369325,370005..370143,370375..370525)
location: region:363645-370525:1
so has part: feature:363645-363806:1:exon
so has part: feature:363922-364098:1:exon
so has part: feature:364335-364432:1:exon
so has part: feature:364627-364681:1:exon
so has part: feature:364831-364902:1:exon
so has part: feature:365071-365133:1:exon
so has part: feature:365320-365452:1:exon
so has part: feature:365536-365645:1:exon
so has part: feature:365723-365899:1:exon
so has part: feature:365984-366170:1:exon
so has part: feature:366272-366390:1:exon
so has part: feature:366617-366728:1:exon
so has part: feature:367132-367348:1:exon
so has part: feature:367421-367586:1:exon
so has part: feature:367669-367723:1:exon
so has part: feature:368014-368120:1:exon
so has part: feature:368228-368459:1:exon
so has part: feature:368559-368643:1:exon
so has part: feature:369228-369325:1:exon
so has part: feature:370005-370143:1:exon
so has part: feature:370375-370525:1:exon

XP_030313241.1
type: Protein
SIO_000068: ncbiprotein

position:363645:1
position: 363645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:363645-363806:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:363922-364098:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:364335-364432:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:364627-364681:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:364831-364902:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:365071-365133:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:365320-365452:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:365536-365645:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:365723-365899:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:365984-366170:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:366272-366390:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:366617-366728:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:367132-367348:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:367421-367586:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:367669-367723:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:368014-368120:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:368228-368459:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:368559-368643:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:369228-369325:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:370005-370143:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:370375-370525:1:exon

AP3B2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: AP3B2
product: adaptor related protein complex 3 subunit beta 2, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030457382.1
SIO_010081: AP3B2
subclass of: SO_0000673
so part of: AP3B2
location: join(368402..368459,368545..368643,369228..369325,370005..370143,370375..370829)
location: region:368402-370829:1
so has part: feature:368402-368459:1:exon
so has part: feature:368545-368643:1:exon
so has part: feature:369228-369325:1:exon
so has part: feature:370005-370143:1:exon
so has part: feature:370375-370829:1:exon

position:368402:1
position: 368402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:368402-368459:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:368545-368643:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:369228-369325:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:370005-370143:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:370375-370829:1:exon

AP3B2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: AP3B2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: AP-3 complex subunit beta-2 isoform X6
translation: MGIDFCDSTQAANFQLCTHTRHFYVSIQPPVGELMAPVFMSENEFKKEQGKLMGMSEITEKLTLSEKCCSDHTIVQQVTSAANVGRVPCGADNEYRFAAKTVTSGSLVLITLERRQGAAAQLTVNSEKMVIGTMLVKDIVQALAQ
SIO_010081: AP3B2
subclass of: SO_0000673
so part of: AP3B2
location: join(368594..368643,369228..369325,370005..370143,370375..370525)
location: region:368594-370525:1
so has part: feature:368594-368643:1:exon
so has part: feature:369228-369325:1:exon
so has part: feature:370005-370143:1:exon
so has part: feature:370375-370525:1:exon

XP_030313242.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:368594-368643:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:369228-369325:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:370005-370143:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:370375-370525:1:exon

CPEB1
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: CPEB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 385597..410029
location: region:385597-410029:1
so has part: feature:385597-410029:1:exon
subclass of: SO_0000010

103538880
type: Gene
SIO_000068: ncbigene

position:385597:1
position: 385597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:410029:1
position: 410029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:385597-410029:1:exon

CPEB1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: CPEB1
product: cytoplasmic polyadenylation element binding protein 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030456938.1
SIO_010081: CPEB1
subclass of: SO_0000673
so part of: CPEB1
location: join(385597..385645,386414..386602,402018..402244,403749..403998,404314..404427,404506..404610,405504..405640,406799..406997,408731..408825,409047..409127,409831..410029)
location: region:385597-410029:1
so has part: feature:385597-385645:1:exon
so has part: feature:386414-386602:1:exon
so has part: feature:402018-402244:1:exon
so has part: feature:403749-403998:1:exon
so has part: feature:404314-404427:1:exon
so has part: feature:404506-404610:1:exon
so has part: feature:405504-405640:1:exon
so has part: feature:406799-406997:1:exon
so has part: feature:408731-408825:1:exon
so has part: feature:409047-409127:1:exon
so has part: feature:409831-410029:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:385597-385645:1:exon

position:385645:1
position: 385645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:386414-386602:1:exon

position:386414:1
position: 386414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:386602:1
position: 386602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:402018-402244:1:exon

position:402018:1
position: 402018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:402244:1
position: 402244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:403749-403998:1:exon

position:403749:1
position: 403749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:403998:1
position: 403998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:404314-404427:1:exon

position:404314:1
position: 404314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:404427:1
position: 404427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:404506-404610:1:exon

position:404506:1
position: 404506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:404610:1
position: 404610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:405504-405640:1:exon

position:405504:1
position: 405504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:405640:1
position: 405640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:406799-406997:1:exon

position:406799:1
position: 406799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:406997:1
position: 406997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:408731-408825:1:exon

position:408731:1
position: 408731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:408825:1
position: 408825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:409047-409127:1:exon

position:409047:1
position: 409047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:409127:1
position: 409127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:409831-410029:1:exon

position:409831:1
position: 409831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CPEB1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: CPEB1
product: cytoplasmic polyadenylation element binding protein 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030456939.1
SIO_010081: CPEB1
subclass of: SO_0000673
so part of: CPEB1
location: join(385597..385645,386414..386602,402018..402244,403749..403998,404314..404427,404506..404595,405504..405640,406799..406997,408731..408825,409047..409127,409831..410029)
location: region:385597-410029:1
so has part: feature:385597-385645:1:exon
so has part: feature:386414-386602:1:exon
so has part: feature:402018-402244:1:exon
so has part: feature:403749-403998:1:exon
so has part: feature:404314-404427:1:exon
so has part: feature:404506-404595:1:exon
so has part: feature:405504-405640:1:exon
so has part: feature:406799-406997:1:exon
so has part: feature:408731-408825:1:exon
so has part: feature:409047-409127:1:exon
so has part: feature:409831-410029:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:385597-385645:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:386414-386602:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:402018-402244:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:403749-403998:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:404314-404427:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:404506-404595:1:exon

position:404595:1
position: 404595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:405504-405640:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:406799-406997:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:408731-408825:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:409047-409127:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:409831-410029:1:exon

CPEB1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: CPEB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cytoplasmic polyadenylation element-binding protein 1 isoform X1
translation: MLFPTSTQESSRGLPDTNDLCLGLQSLNLTGWDRPWSTQDSDAAAQTSTQSVLSMLSNPLGNVLGKPPLGFLPLDPIGSDLSEKFSTPTLRNSRLDSRSLLDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLSFLPLSGVSRDPLKMGVGSRLDQDQATLAAVTSSPASASKRWPGASAWPSWDLLDSPEDPFSIEREARLHRQAAAVNEATCTWSGQLPPRNYKNPVYSCKVFLGGVPWDITEAGLMNTFRVFGSLSVEWPGKDGKHPRCPPKGNMPKGYVYLVFESEKSVRALLQACSHDLMNPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSKTVFVGALHGMLNAEALAAVMNDLFGGVVYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVTAAFVEIKTTKFTKKVQIDPYLEDSMCQVCSTQPGPFFCRDQICFKYFCRSCWHWQHSMEVLRHHRPLMRNQKNRDSS
SIO_010081: CPEB1
subclass of: SO_0000673
so part of: CPEB1
location: join(386449..386602,402018..402244,403749..403998,404314..404427,404506..404610,405504..405640,406799..406997,408731..408825,409047..409127,409831..409941)
location: region:386449-409941:1
so has part: feature:386449-386602:1:exon
so has part: feature:402018-402244:1:exon
so has part: feature:403749-403998:1:exon
so has part: feature:404314-404427:1:exon
so has part: feature:404506-404610:1:exon
so has part: feature:405504-405640:1:exon
so has part: feature:406799-406997:1:exon
so has part: feature:408731-408825:1:exon
so has part: feature:409047-409127:1:exon
so has part: feature:409831-409941:1:exon

XP_030312798.1
type: Protein
SIO_000068: ncbiprotein

position:386449:1
position: 386449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:409941:1
position: 409941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:386449-386602:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:402018-402244:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:403749-403998:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:404314-404427:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:404506-404610:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:405504-405640:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:406799-406997:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:408731-408825:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:409047-409127:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:409831-409941:1:exon

CPEB1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: CPEB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cytoplasmic polyadenylation element-binding protein 1 isoform X2
translation: MLFPTSTQESSRGLPDTNDLCLGLQSLNLTGWDRPWSTQDSDAAAQTSTQSVLSMLSNPLGNVLGKPPLGFLPLDPIGSDLSEKFSTPTLRNSRLDSRSLLDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLSFLPLSGVSRDPLKMGVGSRLDQDQATLAAVTSSPASASKRWPGASAWPSWDLLDSPEDPFSIEREARLHRQAAAVNEATCTWSGQLPPRNYKNPVYSCKVFLGGVPWDITEAGLMNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLVFESEKSVRALLQACSHDLMNPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSKTVFVGALHGMLNAEALAAVMNDLFGGVVYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVTAAFVEIKTTKFTKKVQIDPYLEDSMCQVCSTQPGPFFCRDQICFKYFCRSCWHWQHSMEVLRHHRPLMRNQKNRDSS
SIO_010081: CPEB1
subclass of: SO_0000673
so part of: CPEB1
location: join(386449..386602,402018..402244,403749..403998,404314..404427,404506..404595,405504..405640,406799..406997,408731..408825,409047..409127,409831..409941)
location: region:386449-409941:1
so has part: feature:386449-386602:1:exon
so has part: feature:402018-402244:1:exon
so has part: feature:403749-403998:1:exon
so has part: feature:404314-404427:1:exon
so has part: feature:404506-404595:1:exon
so has part: feature:405504-405640:1:exon
so has part: feature:406799-406997:1:exon
so has part: feature:408731-408825:1:exon
so has part: feature:409047-409127:1:exon
so has part: feature:409831-409941:1:exon

XP_030312799.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:386449-386602:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:402018-402244:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:403749-403998:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:404314-404427:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:404506-404595:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:405504-405640:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:406799-406997:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:408731-408825:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:409047-409127:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:409831-409941:1:exon

RPS17
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: RPS17
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 412269..415306
location: region:412269-415306:1
so has part: feature:412269-415306:1:exon
subclass of: SO_0000010

103538774
type: Gene
SIO_000068: ncbigene

position:412269:1
position: 412269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:415306:1
position: 415306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:412269-415306:1:exon

RPS17
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: RPS17
product: ribosomal protein S17
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 mRNAs, 60 ESTs, 2 long SRA reads, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_008505250.2
SIO_010081: RPS17
subclass of: SO_0000673
so part of: RPS17
location: join(412269..412331,412520..412671,413110..413215,414754..414819,415177..415306)
location: region:412269-415306:1
so has part: feature:412269-412331:1:exon
so has part: feature:412520-412671:1:exon
so has part: feature:413110-413215:1:exon
so has part: feature:414754-414819:1:exon
so has part: feature:415177-415306:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:412269-412331:1:exon

position:412331:1
position: 412331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:412520-412671:1:exon

position:412520:1
position: 412520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:412671:1
position: 412671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:413110-413215:1:exon

position:413110:1
position: 413110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:413215:1
position: 413215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:414754-414819:1:exon

position:414754:1
position: 414754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:414819:1
position: 414819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:415177-415306:1:exon

position:415177:1
position: 415177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RPS17
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: RPS17
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 40S ribosomal protein S17
translation: MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAL
SIO_010081: RPS17
subclass of: SO_0000673
so part of: RPS17
location: join(412329..412331,412520..412671,413110..413215,414754..414819,415177..415257)
location: region:412329-415257:1
so has part: feature:412329-412331:1:exon
so has part: feature:412520-412671:1:exon
so has part: feature:413110-413215:1:exon
so has part: feature:414754-414819:1:exon
so has part: feature:415177-415257:1:exon

XP_008503472.1
type: Protein
SIO_000068: ncbiprotein

position:412329:1
position: 412329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:415257:1
position: 415257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:412329-412331:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:412520-412671:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:413110-413215:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:414754-414819:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:415177-415257:1:exon

LOC115598899
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: LOC115598899
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 412760..412893
location: region:412760-412893:1
so has part: feature:412760-412893:1:exon
subclass of: SO_0000578

115598899
type: Gene
SIO_000068: ncbigene

position:412760:1
position: 412760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:412893:1
position: 412893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:412760-412893:1:exon

LOC115598899
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9244
nc RNA class: snoRNA
gene: LOC115598899
product: small nucleolar RNA SNORA71
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00056
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003988007.1
SIO_010081: LOC115598899
subclass of: SO_0000673
so part of: LOC115598899
location: 412760..412893
location: region:412760-412893:1
so has part: feature:412760-412893:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:412760-412893:1:exon

TERB2
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: TERB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(416138..420189)
location: region:416138-420189:-1
so has part: feature:416138-420189:-1:exon
subclass of: SO_0000010

103525769
type: Gene
SIO_000068: ncbigene

position:416138:-1
position: 416138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:420189:-1
position: 420189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:416138-420189:-1:exon

TERB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: TERB2
product: telomere repeat binding bouquet formation protein 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 19% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_008490778.1
SIO_010081: TERB2
subclass of: SO_0000673
so part of: TERB2
location: complement(join(416138..416283,416944..417035,417175..417263,417758..417819,418115..418260,419694..419775,420126..420189))
location: region:416138-420189:-1
so has part: feature:420126-420189:-1:exon
so has part: feature:419694-419775:-1:exon
so has part: feature:418115-418260:-1:exon
so has part: feature:417758-417819:-1:exon
so has part: feature:417175-417263:-1:exon
so has part: feature:416944-417035:-1:exon
so has part: feature:416138-416283:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:420126-420189:-1:exon

position:420126:-1
position: 420126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:419694-419775:-1:exon

position:419694:-1
position: 419694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:419775:-1
position: 419775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:418115-418260:-1:exon

position:418115:-1
position: 418115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:418260:-1
position: 418260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:417758-417819:-1:exon

position:417758:-1
position: 417758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:417819:-1
position: 417819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:417175-417263:-1:exon

position:417175:-1
position: 417175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:417263:-1
position: 417263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:416944-417035:-1:exon

position:416944:-1
position: 416944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:417035:-1
position: 417035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:416138-416283:-1:exon

position:416283:-1
position: 416283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TERB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: TERB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: telomere repeats-binding bouquet formation protein 2
translation: MFRGHRAWFSQSVSPGPRALWVAGGGTLAHWQDADFLFSSDAAHPDTCRIHESLDYLECRATVFHSHFLSAWASSSTGVKSSVALGHFILPPACLHEEIRRKIGCFIWEQRDDSLAEQPNENLRDDLEVAREGCGEGAGEEVLNLTKSSKEASASRAPVLGGFPYRTLQEYPMNNMVTGYTSARDMKKYTGELHDFTPGTLGYVAYWVQKEINISSDTKAKMKRKL
SIO_010081: TERB2
subclass of: SO_0000673
so part of: TERB2
location: complement(join(416138..416283,416944..417035,417175..417263,417758..417819,418115..418260,419694..419775,420126..420189))
location: region:416138-420189:-1
so has part: feature:420126-420189:-1:exon
so has part: feature:419694-419775:-1:exon
so has part: feature:418115-418260:-1:exon
so has part: feature:417758-417819:-1:exon
so has part: feature:417175-417263:-1:exon
so has part: feature:416944-417035:-1:exon
so has part: feature:416138-416283:-1:exon

XP_008489000.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:420126-420189:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:419694-419775:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:418115-418260:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:417758-417819:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:417175-417263:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:416944-417035:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:416138-416283:-1:exon

B2M
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: B2M
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(424368..425370)
location: region:424368-425370:-1
so has part: feature:424368-425370:-1:exon
subclass of: SO_0000010

103525666
type: Gene
SIO_000068: ncbigene

position:424368:-1
position: 424368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:425370:-1
position: 425370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:424368-425370:-1:exon

B2M
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: B2M
product: beta-2-microglobulin
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
transcript id: XM_008490668.2
SIO_010081: B2M
subclass of: SO_0000673
so part of: B2M
location: complement(join(424368..424381,424885..425158,425259..425370))
location: region:424368-425370:-1
so has part: feature:425259-425370:-1:exon
so has part: feature:424885-425158:-1:exon
so has part: feature:424368-424381:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:425259-425370:-1:exon

position:425259:-1
position: 425259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:424885-425158:-1:exon

position:424885:-1
position: 424885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:425158:-1
position: 425158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:424368-424381:-1:exon

position:424381:-1
position: 424381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

B2M
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: B2M
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: beta-2-microglobulin
translation: MLKAGVLVLVVLFGLEKADVGCPGREEPCRGCGGDFWEPPKVEVYSCNHGQXQNNTLSCFVSSFHPPKIDITLLKNGEPLSDVQYTDMAFSDKWYFQQQAYAPFVPQKGDIYTCSVAHSTFKEPQTFQWDKDF
SIO_010081: B2M
subclass of: SO_0000673
so part of: B2M
location: complement(join(424368..424381,424885..425158,425259..425370))
location: region:424368-425370:-1
so has part: feature:425259-425370:-1:exon
so has part: feature:424885-425158:-1:exon
so has part: feature:424368-424381:-1:exon

XP_008488890.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:425259-425370:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:424885-425158:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:424368-424381:-1:exon

PATL2
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: PATL2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 427604..433537
location: region:427604-433537:1
so has part: feature:427604-433537:1:exon
subclass of: SO_0000010

103538679
type: Gene
SIO_000068: ncbigene

position:427604:1
position: 427604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:433537:1
position: 433537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:427604-433537:1:exon

PATL2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: PATL2
product: PAT1 homolog 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
transcript id: XM_030457154.1
SIO_010081: PATL2
subclass of: SO_0000673
so part of: PATL2
location: join(427604..427627,428167..428269,428438..428751,428889..428957,429059..429124,429486..429653,429769..429855,430245..430399,430517..430591,430667..430808,430916..431036,431119..431223,431572..431609,431748..431896,432106..432265,432591..432731,432825..432922,432999..433148,433504..433537)
location: region:427604-433537:1
so has part: feature:427604-427627:1:exon
so has part: feature:428167-428269:1:exon
so has part: feature:428438-428751:1:exon
so has part: feature:428889-428957:1:exon
so has part: feature:429059-429124:1:exon
so has part: feature:429486-429653:1:exon
so has part: feature:429769-429855:1:exon
so has part: feature:430245-430399:1:exon
so has part: feature:430517-430591:1:exon
so has part: feature:430667-430808:1:exon
so has part: feature:430916-431036:1:exon
so has part: feature:431119-431223:1:exon
so has part: feature:431572-431609:1:exon
so has part: feature:431748-431896:1:exon
so has part: feature:432106-432265:1:exon
so has part: feature:432591-432731:1:exon
so has part: feature:432825-432922:1:exon
so has part: feature:432999-433148:1:exon
so has part: feature:433504-433537:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:427604-427627:1:exon

position:427627:1
position: 427627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:428167-428269:1:exon

position:428167:1
position: 428167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:428269:1
position: 428269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:428438-428751:1:exon

position:428438:1
position: 428438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:428751:1
position: 428751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:428889-428957:1:exon

position:428889:1
position: 428889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:428957:1
position: 428957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:429059-429124:1:exon

position:429059:1
position: 429059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:429124:1
position: 429124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:429486-429653:1:exon

position:429486:1
position: 429486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:429653:1
position: 429653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:429769-429855:1:exon

position:429769:1
position: 429769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:429855:1
position: 429855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:430245-430399:1:exon

position:430245:1
position: 430245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:430399:1
position: 430399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:430517-430591:1:exon

position:430517:1
position: 430517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:430591:1
position: 430591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:430667-430808:1:exon

position:430667:1
position: 430667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:430808:1
position: 430808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:430916-431036:1:exon

position:430916:1
position: 430916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:431036:1
position: 431036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:431119-431223:1:exon

position:431119:1
position: 431119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:431223:1
position: 431223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:431572-431609:1:exon

position:431572:1
position: 431572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:431609:1
position: 431609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:431748-431896:1:exon

position:431748:1
position: 431748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:431896:1
position: 431896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:432106-432265:1:exon

position:432106:1
position: 432106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:432265:1
position: 432265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:432591-432731:1:exon

position:432591:1
position: 432591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:432731:1
position: 432731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:432825-432922:1:exon

position:432825:1
position: 432825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:432922:1
position: 432922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:432999-433148:1:exon

position:432999:1
position: 432999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:433148:1
position: 433148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:433504-433537:1:exon

position:433504:1
position: 433504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PATL2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: PATL2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein PAT1 homolog 2
translation: MAGSGEPVILEDYLLVEDGPLLEEMAEEDEELDLYNEMTFGLDQASTEEDAPKPLISLEMRPELVTVVTEETDARDEPRPGVVEEPEEVGEPQKEGGMELDVEQIGSELEEEEEEQLGTEEQEEDLEPHDLGDPAVMRAVQSKPTLESQDSAVLDSRVGACWAELSKEDTLAMDRVVWGSCPSNIPPHHMLEDKAILQVLEQPPPSTNVVLDFLGSPVQRGYRGSPCLKRPDLRLMSPQSFPQQFLQQESPLLPRSPTSPRPFTMPRRPSPLFASNQTAGYASPAPFQPMSPPISRPPRPLAMHFGPVSPSLDPTVFFSPAASSQLNLSVPSHMTQLHPQHQRILTQRQQEGQSISSKKRWSTKVDPYAGLMTSKEKDWVIKVEMIQLQSENMDDDDYYYQMYYHRLERKQAEEELLGKRSKQEPPKLVTPFIQKVETYNSVVRIAGSLGQVAVSTCYSPRRAIDAVHHALVEEEVGSYRLRALHRIEKLFLQLLEVEEVQRKMSQALEEQQPSCQEQKSQEVEYIYQALKIGACSSEEEAEDEFLQLLCVQKGKKLTARLLPHLIQEQAEKILLTITHHLPFLMKKDMLDESLSLLYSPLNKVVGRMTFSKLIEVLQEMTRPWPKSPELPLTMALKNQFGISLLYSLLSHGERLLSSDVPLEPCGRDFELWTDTVFLVARELSQVPKALLVEPLFLPSNLLSLFCRYLDKQTVHHLETKMECSPLEAAMPC
SIO_010081: PATL2
subclass of: SO_0000673
so part of: PATL2
location: join(427604..427627,428167..428269,428438..428751,428889..428957,429059..429124,429486..429653,429769..429855,430245..430399,430517..430591,430667..430808,430916..431036,431119..431223,431572..431609,431748..431896,432106..432265,432591..432731,432825..432922,432999..433148,433504..433537)
location: region:427604-433537:1
so has part: feature:427604-427627:1:exon
so has part: feature:428167-428269:1:exon
so has part: feature:428438-428751:1:exon
so has part: feature:428889-428957:1:exon
so has part: feature:429059-429124:1:exon
so has part: feature:429486-429653:1:exon
so has part: feature:429769-429855:1:exon
so has part: feature:430245-430399:1:exon
so has part: feature:430517-430591:1:exon
so has part: feature:430667-430808:1:exon
so has part: feature:430916-431036:1:exon
so has part: feature:431119-431223:1:exon
so has part: feature:431572-431609:1:exon
so has part: feature:431748-431896:1:exon
so has part: feature:432106-432265:1:exon
so has part: feature:432591-432731:1:exon
so has part: feature:432825-432922:1:exon
so has part: feature:432999-433148:1:exon
so has part: feature:433504-433537:1:exon

XP_030313014.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:427604-427627:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:428167-428269:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:428438-428751:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:428889-428957:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:429059-429124:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:429486-429653:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:429769-429855:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:430245-430399:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:430517-430591:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:430667-430808:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:430916-431036:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:431119-431223:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:431572-431609:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:431748-431896:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:432106-432265:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:432591-432731:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:432825-432922:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:432999-433148:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:433504-433537:1:exon

SNX1
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: SNX1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 435687..449273
location: region:435687-449273:1
so has part: feature:435687-449273:1:exon
subclass of: SO_0000010

103525560
type: Gene
SIO_000068: ncbigene

position:435687:1
position: 435687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:449273:1
position: 449273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:435687-449273:1:exon

SNX1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: SNX1
product: sorting nexin 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 10 ESTs, 1 long SRA read, 22 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_030457297.1
SIO_010081: SNX1
subclass of: SO_0000673
so part of: SNX1
location: join(435687..435907,439421..439520,440435..440568,441135..441201,441996..442039,442971..443112,443651..443729,444401..444476,444921..445034,445224..445317,445892..446097,447415..447558,447961..448041,448463..448534,448816..449273)
location: region:435687-449273:1
so has part: feature:435687-435907:1:exon
so has part: feature:439421-439520:1:exon
so has part: feature:440435-440568:1:exon
so has part: feature:441135-441201:1:exon
so has part: feature:441996-442039:1:exon
so has part: feature:442971-443112:1:exon
so has part: feature:443651-443729:1:exon
so has part: feature:444401-444476:1:exon
so has part: feature:444921-445034:1:exon
so has part: feature:445224-445317:1:exon
so has part: feature:445892-446097:1:exon
so has part: feature:447415-447558:1:exon
so has part: feature:447961-448041:1:exon
so has part: feature:448463-448534:1:exon
so has part: feature:448816-449273:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:435687-435907:1:exon

position:435907:1
position: 435907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:439421-439520:1:exon

position:439421:1
position: 439421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:439520:1
position: 439520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:440435-440568:1:exon

position:440435:1
position: 440435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:440568:1
position: 440568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:441135-441201:1:exon

position:441135:1
position: 441135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:441201:1
position: 441201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:441996-442039:1:exon

position:441996:1
position: 441996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:442039:1
position: 442039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:442971-443112:1:exon

position:442971:1
position: 442971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:443112:1
position: 443112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:443651-443729:1:exon

position:443651:1
position: 443651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:443729:1
position: 443729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:444401-444476:1:exon

position:444401:1
position: 444401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:444476:1
position: 444476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:444921-445034:1:exon

position:444921:1
position: 444921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:445034:1
position: 445034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:445224-445317:1:exon

position:445224:1
position: 445224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:445317:1
position: 445317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:445892-446097:1:exon

position:445892:1
position: 445892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:446097:1
position: 446097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:447415-447558:1:exon

position:447415:1
position: 447415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:447558:1
position: 447558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:447961-448041:1:exon

position:447961:1
position: 447961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:448041:1
position: 448041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:448463-448534:1:exon

position:448463:1
position: 448463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:448534:1
position: 448534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:448816-449273:1:exon

position:448816:1
position: 448816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SNX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: SNX1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sorting nexin-1
translation: MRNRPTRRPPAPVSGAAAAGGSGGAAMASGGGSRSPSPVQRLPPPFPEPHGGDSDGVGTADSDTEGEDIFTGTSKPATPKRESLPVSSTSKENGVQGEHDEQDLFADATVELSLDSTQNNQKKELAKTSNPVPSLEVAASSSKNHPQSYEELEEEEQEDKFELTVGVSDPEKVGDGMNAYVAYKVSTQTSMPMFRSQQFSVKRRFSDFLGLYEKLSEKHAQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLRRVVSHPTMLQDPDVREFLEKEELPRAVSTQALSGAGILKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEDQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANSDFFLLAELLGDYIRLLSVVRGAFDQRMKTWQRWQDAQAMLQKKREMEARLLWSNKPDKLQQAKEEISEWESRVRWYERDFERISAVIRKEVIRFEKEKSKDFRNHVTKYLETLLNSQQQLVKYWEAFLPEAKAIS
SIO_010081: SNX1
subclass of: SO_0000673
so part of: SNX1
location: join(435689..435907,439421..439520,440435..440568,441135..441201,441996..442039,442971..443112,443651..443729,444401..444476,444921..445034,445224..445317,445892..446097,447415..447558,447961..448041,448463..448534,448816..448866)
location: region:435689-448866:1
so has part: feature:435689-435907:1:exon
so has part: feature:439421-439520:1:exon
so has part: feature:440435-440568:1:exon
so has part: feature:441135-441201:1:exon
so has part: feature:441996-442039:1:exon
so has part: feature:442971-443112:1:exon
so has part: feature:443651-443729:1:exon
so has part: feature:444401-444476:1:exon
so has part: feature:444921-445034:1:exon
so has part: feature:445224-445317:1:exon
so has part: feature:445892-446097:1:exon
so has part: feature:447415-447558:1:exon
so has part: feature:447961-448041:1:exon
so has part: feature:448463-448534:1:exon
so has part: feature:448816-448866:1:exon

XP_030313157.1
type: Protein
SIO_000068: ncbiprotein

position:435689:1
position: 435689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:448866:1
position: 448866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:435689-435907:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:439421-439520:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:440435-440568:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:441135-441201:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:441996-442039:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:442971-443112:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:443651-443729:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:444401-444476:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:444921-445034:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:445224-445317:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:445892-446097:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:447415-447558:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:447961-448041:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:448463-448534:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:448816-448866:1:exon

SNX22
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: SNX22
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 449506..452128
location: region:449506-452128:1
so has part: feature:449506-452128:1:exon
subclass of: SO_0000010

103525451
type: Gene
SIO_000068: ncbigene

position:449506:1
position: 449506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:452128:1
position: 452128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:449506-452128:1:exon

SNX22
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: SNX22
product: sorting nexin 22, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_030456836.1
SIO_010081: SNX22
subclass of: SO_0000673
so part of: SNX22
location: join(449506..449933,450935..451018,451124..451228,451318..451412,451569..451645,451762..452128)
location: region:449506-452128:1
so has part: feature:449506-449933:1:exon
so has part: feature:450935-451018:1:exon
so has part: feature:451124-451228:1:exon
so has part: feature:451318-451412:1:exon
so has part: feature:451569-451645:1:exon
so has part: feature:451762-452128:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:449506-449933:1:exon

position:449933:1
position: 449933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:450935-451018:1:exon

position:450935:1
position: 450935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:451018:1
position: 451018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:451124-451228:1:exon

position:451124:1
position: 451124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:451228:1
position: 451228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:451318-451412:1:exon

position:451318:1
position: 451318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:451412:1
position: 451412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:451569-451645:1:exon

position:451569:1
position: 451569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:451645:1
position: 451645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:451762-452128:1:exon

position:451762:1
position: 451762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SNX22
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: SNX22
product: sorting nexin 22, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_008490446.2
SIO_010081: SNX22
subclass of: SO_0000673
so part of: SNX22
location: join(449506..449933,450935..451018,451124..451228,451318..451412,451572..451645,451762..452128)
location: region:449506-452128:1
so has part: feature:449506-449933:1:exon
so has part: feature:450935-451018:1:exon
so has part: feature:451124-451228:1:exon
so has part: feature:451318-451412:1:exon
so has part: feature:451572-451645:1:exon
so has part: feature:451762-452128:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:449506-449933:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:450935-451018:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:451124-451228:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:451318-451412:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:451572-451645:1:exon

position:451572:1
position: 451572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:451762-452128:1:exon

SNX22
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: SNX22
product: sorting nexin 22, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030456837.1
SIO_010081: SNX22
subclass of: SO_0000673
so part of: SNX22
location: join(449520..449615,449708..449933,450935..451018,451124..451228,451318..451412,451569..451645,451762..452128)
location: region:449520-452128:1
so has part: feature:449520-449615:1:exon
so has part: feature:449708-449933:1:exon
so has part: feature:450935-451018:1:exon
so has part: feature:451124-451228:1:exon
so has part: feature:451318-451412:1:exon
so has part: feature:451569-451645:1:exon
so has part: feature:451762-452128:1:exon

position:449520:1
position: 449520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:449520-449615:1:exon

position:449615:1
position: 449615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:449708-449933:1:exon

position:449708:1
position: 449708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:450935-451018:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:451124-451228:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:451318-451412:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:451569-451645:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:451762-452128:1:exon

SNX22
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: SNX22
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sorting nexin-22 isoform X1
translation: MIDVSIPAAEPPAAARSPDKGHTVFRVEVLCNGRRHTVAKRYSEFQALHKRIKKTCKVPDFPPRHVPNWVPKVLEQRRQGLELYIQGVLYHNKELPQDVLDFLKVRHGQQDSKASSPFSPCQLPSQRPILSFCTDPYVRPPAMDLLPNTVLRGVLQGLYLPPSPTAPRAPGPPGS
SIO_010081: SNX22
subclass of: SO_0000673
so part of: SNX22
location: join(449865..449933,450935..451018,451124..451228,451318..451412,451569..451645,451762..451859)
location: region:449865-451859:1
so has part: feature:449865-449933:1:exon
so has part: feature:450935-451018:1:exon
so has part: feature:451124-451228:1:exon
so has part: feature:451318-451412:1:exon
so has part: feature:451569-451645:1:exon
so has part: feature:451762-451859:1:exon

XP_030312696.1
type: Protein
SIO_000068: ncbiprotein

position:449865:1
position: 449865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:451859:1
position: 451859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:449865-449933:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:450935-451018:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:451124-451228:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:451318-451412:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:451569-451645:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:451762-451859:1:exon

SNX22
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: SNX22
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sorting nexin-22 isoform X1
translation: MIDVSIPAAEPPAAARSPDKGHTVFRVEVLCNGRRHTVAKRYSEFQALHKRIKKTCKVPDFPPRHVPNWVPKVLEQRRQGLELYIQGVLYHNKELPQDVLDFLKVRHGQQDSKASSPFSPCQLPSQRPILSFCTDPYVRPPAMDLLPNTVLRGVLQGLYLPPSPTAPRAPGPPGS
SIO_010081: SNX22
subclass of: SO_0000673
so part of: SNX22
location: join(449865..449933,450935..451018,451124..451228,451318..451412,451569..451645,451762..451859)
location: region:449865-451859:1
so has part: feature:449865-449933:1:exon
so has part: feature:450935-451018:1:exon
so has part: feature:451124-451228:1:exon
so has part: feature:451318-451412:1:exon
so has part: feature:451569-451645:1:exon
so has part: feature:451762-451859:1:exon

XP_030312697.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:449865-449933:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:450935-451018:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:451124-451228:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:451318-451412:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:451569-451645:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:451762-451859:1:exon

SNX22
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: SNX22
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sorting nexin-22 isoform X2
translation: MIDVSIPAAEPPAAARSPDKGHTVFRVEVLCNGRRHTVAKRYSEFQALHKRIKKTCKVPDFPPRHVPNWVPKVLEQRRQGLELYIQGVLYHNKELPQDVLDFLKVRHGQQDSKASSPFPCQLPSQRPILSFCTDPYVRPPAMDLLPNTVLRGVLQGLYLPPSPTAPRAPGPPGS
SIO_010081: SNX22
subclass of: SO_0000673
so part of: SNX22
location: join(449865..449933,450935..451018,451124..451228,451318..451412,451572..451645,451762..451859)
location: region:449865-451859:1
so has part: feature:449865-449933:1:exon
so has part: feature:450935-451018:1:exon
so has part: feature:451124-451228:1:exon
so has part: feature:451318-451412:1:exon
so has part: feature:451572-451645:1:exon
so has part: feature:451762-451859:1:exon

XP_008488668.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:449865-449933:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:450935-451018:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:451124-451228:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:451318-451412:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:451572-451645:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:451762-451859:1:exon

PPIB
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: PPIB
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(452270..453958)
location: region:452270-453958:-1
so has part: feature:452270-453958:-1:exon
subclass of: SO_0000010

103525347
type: Gene
SIO_000068: ncbigene

position:452270:-1
position: 452270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:453958:-1
position: 453958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:452270-453958:-1:exon

PPIB
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: PPIB
product: peptidylprolyl isomerase B
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 42 ESTs, 1 long SRA read, 40 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_030456835.1
SIO_010081: PPIB
subclass of: SO_0000673
so part of: PPIB
location: complement(join(452270..452606,452708..452892,453092..453185,453314..453427,453694..453958))
location: region:452270-453958:-1
so has part: feature:453694-453958:-1:exon
so has part: feature:453314-453427:-1:exon
so has part: feature:453092-453185:-1:exon
so has part: feature:452708-452892:-1:exon
so has part: feature:452270-452606:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:453694-453958:-1:exon

position:453694:-1
position: 453694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:453314-453427:-1:exon

position:453314:-1
position: 453314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:453427:-1
position: 453427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:453092-453185:-1:exon

position:453092:-1
position: 453092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:453185:-1
position: 453185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:452708-452892:-1:exon

position:452708:-1
position: 452708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:452892:-1
position: 452892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:452270-452606:-1:exon

position:452606:-1
position: 452606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PPIB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: PPIB
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: peptidyl-prolyl cis-trans isomerase B
translation: MQAARRALWPCCERRRMKVLVAAAALGAALLLLLPAASRADERKKGPKVTAKVFFDLRIGEDDVGRVVIGLFGKTVPKTVENFVALATGEKGFGFKGSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGDRFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTPWLDGKHVVFGKVLEGMEVVRKVENTKTDSRDKPLKDVVIADCGTIEVEKPFAIAKE
SIO_010081: PPIB
subclass of: SO_0000673
so part of: PPIB
location: complement(join(452484..452606,452708..452892,453092..453185,453314..453427,453694..453849))
location: region:452484-453849:-1
so has part: feature:453694-453849:-1:exon
so has part: feature:453314-453427:-1:exon
so has part: feature:453092-453185:-1:exon
so has part: feature:452708-452892:-1:exon
so has part: feature:452484-452606:-1:exon

XP_030312695.1
type: Protein
SIO_000068: ncbiprotein

position:452484:-1
position: 452484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:453849:-1
position: 453849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:453694-453849:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:453314-453427:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:453092-453185:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:452708-452892:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:452484-452606:-1:exon

LOC115598853
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: LOC115598853
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(454892..460498)
location: region:454892-460498:-1
so has part: feature:454892-460498:-1:exon
subclass of: SO_0000010

115598853
type: Gene
SIO_000068: ncbigene

position:454892:-1
position: 454892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:460498:-1
position: 460498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:454892-460498:-1:exon

LOC115598853
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: LOC115598853
product: ubiquitin carboxyl-terminal hydrolase 17-like protein 6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 50% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030457171.1
SIO_010081: LOC115598853
subclass of: SO_0000673
so part of: LOC115598853
location: complement(join(454892..455425,457335..457434,457806..457906,458149..458283,458612..458723,458983..459065,459235..459305,459465..459629,459710..459820,460272..460498))
location: region:454892-460498:-1
so has part: feature:460272-460498:-1:exon
so has part: feature:459710-459820:-1:exon
so has part: feature:459465-459629:-1:exon
so has part: feature:459235-459305:-1:exon
so has part: feature:458983-459065:-1:exon
so has part: feature:458612-458723:-1:exon
so has part: feature:458149-458283:-1:exon
so has part: feature:457806-457906:-1:exon
so has part: feature:457335-457434:-1:exon
so has part: feature:454892-455425:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:460272-460498:-1:exon

position:460272:-1
position: 460272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:459710-459820:-1:exon

position:459710:-1
position: 459710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:459820:-1
position: 459820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:459465-459629:-1:exon

position:459465:-1
position: 459465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:459629:-1
position: 459629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:459235-459305:-1:exon

position:459235:-1
position: 459235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:459305:-1
position: 459305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:458983-459065:-1:exon

position:458983:-1
position: 458983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:459065:-1
position: 459065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:458612-458723:-1:exon

position:458612:-1
position: 458612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:458723:-1
position: 458723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:458149-458283:-1:exon

position:458149:-1
position: 458149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:458283:-1
position: 458283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:457806-457906:-1:exon

position:457806:-1
position: 457806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:457906:-1
position: 457906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:457335-457434:-1:exon

position:457335:-1
position: 457335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:457434:-1
position: 457434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:454892-455425:-1:exon

position:455425:-1
position: 455425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115598853
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: LOC115598853
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin carboxyl-terminal hydrolase 17-like protein 6
translation: MAPQGNEDKKQRPRVGAGLENMGNTCFLNAVLQCLTYTPSLADYLLSRDHSQSCVRPGNCVMCRVQEHVCKVLHATGSAIVPVDIITALPEIGEHFKLGVQEDAHEFLRCTLDAMQKAHLCDGSLDTSCQHTVIHQIFGSFLRSRVCCLSCQVVFDDYEPFLDILLDIKAAASLSEALDTFVKPELLDARSGFRCRHCGQVTAASKGLTIHWAPQVLTVGLKRFEDVSGGKITKVVKYPKVLDLGPYTTAGEAQHYSLYAVLVHKGESCHSGHYFCYIKANDGLWYKMDDTSVTPCDVDTALQQEAYLLFYVRSSDLRTGARASSSSSAPSRTRSSLGQGVAGSQQRTRARNSSPATRFRPPIPSLLPRPRPPRGPDELPGPPRPGPSGEQPAGRCRPPPVPAAAPAAAGAARTAPDPHAHRSRDPTANNPSSPLAGYIDPGPAPPATTANRHPQHPRPSQSRPARSPSRVRYAQSRPVIAIRPRPAGPRVTAPPRDGAGVPALPAALADPRRTWSTPPLYRP
SIO_010081: LOC115598853
subclass of: SO_0000673
so part of: LOC115598853
location: complement(join(454892..455425,457335..457434,457806..457906,458149..458283,458612..458723,458983..459065,459235..459305,459465..459629,459710..459820,460272..460431))
location: region:454892-460431:-1
so has part: feature:460272-460431:-1:exon
so has part: feature:459710-459820:-1:exon
so has part: feature:459465-459629:-1:exon
so has part: feature:459235-459305:-1:exon
so has part: feature:458983-459065:-1:exon
so has part: feature:458612-458723:-1:exon
so has part: feature:458149-458283:-1:exon
so has part: feature:457806-457906:-1:exon
so has part: feature:457335-457434:-1:exon
so has part: feature:454892-455425:-1:exon

XP_030313031.1
type: Protein
SIO_000068: ncbiprotein

position:460431:-1
position: 460431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:460272-460431:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:459710-459820:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:459465-459629:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:459235-459305:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:458983-459065:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:458612-458723:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:458149-458283:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:457806-457906:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:457335-457434:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:454892-455425:-1:exon

LOC115598854
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: LOC115598854
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(488643..493417)
location: region:488643-493417:-1
so has part: feature:488643-493417:-1:exon
subclass of: SO_0000010

115598854
type: Gene
SIO_000068: ncbigene

position:488643:-1
position: 488643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:493417:-1
position: 493417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:488643-493417:-1:exon

LOC115598854
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: LOC115598854
product: ubiquitin carboxyl-terminal hydrolase 36-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 24% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030457176.1
SIO_010081: LOC115598854
subclass of: SO_0000673
so part of: LOC115598854
location: complement(join(488643..488690,488907..489012,490421..490521,490735..490870,491571..491653,492219..492289,492449..492614,492695..492805,493258..493417))
location: region:488643-493417:-1
so has part: feature:493258-493417:-1:exon
so has part: feature:492695-492805:-1:exon
so has part: feature:492449-492614:-1:exon
so has part: feature:492219-492289:-1:exon
so has part: feature:491571-491653:-1:exon
so has part: feature:490735-490870:-1:exon
so has part: feature:490421-490521:-1:exon
so has part: feature:488907-489012:-1:exon
so has part: feature:488643-488690:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:493258-493417:-1:exon

position:493258:-1
position: 493258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:492695-492805:-1:exon

position:492695:-1
position: 492695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:492805:-1
position: 492805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:492449-492614:-1:exon

position:492449:-1
position: 492449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:492614:-1
position: 492614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:492219-492289:-1:exon

position:492219:-1
position: 492219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:492289:-1
position: 492289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:491571-491653:-1:exon

position:491571:-1
position: 491571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:491653:-1
position: 491653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:490735-490870:-1:exon

position:490735:-1
position: 490735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:490870:-1
position: 490870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:490421-490521:-1:exon

position:490421:-1
position: 490421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:490521:-1
position: 490521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:488907-489012:-1:exon

position:488907:-1
position: 488907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:489012:-1
position: 489012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:488643-488690:-1:exon

position:488690:-1
position: 488690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115598854
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: LOC115598854
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 36-like
translation: MAPQGNEDKKQRPRVGAGLENMGNTCFLNAVLQCLTYTPSLADYLLSREHSQSCVRPGNCVMCRVQEHVCKVLHATGSAIVPVDVITALPEIGEHFKLGVQEDAHEFLRLTLDAMQRACLCDGSLDTSCQHTVIHQIFGSFLRSRVCCSSCQVVSDAYDPFLDVLLDIKAAASLSEALDTFVKPELLDARSGFRCRQFVRYPKVLDLGPYTTAGEAQHYSLYAVLVHKGESCYVGHYFCYIKASNGLWYKMDDSSVTPCDVNTALQQEAYLLFYDRIEQSSGSRLPLAWVKDEEKEISLPIPNKVAQLQETIPAIHLEEGRGPEDG
SIO_010081: LOC115598854
subclass of: SO_0000673
so part of: LOC115598854
location: complement(join(488643..488690,488907..489012,490421..490521,490735..490870,491571..491653,492219..492289,492449..492614,492695..492805,493258..493417))
location: region:488643-493417:-1
so has part: feature:493258-493417:-1:exon
so has part: feature:492695-492805:-1:exon
so has part: feature:492449-492614:-1:exon
so has part: feature:492219-492289:-1:exon
so has part: feature:491571-491653:-1:exon
so has part: feature:490735-490870:-1:exon
so has part: feature:490421-490521:-1:exon
so has part: feature:488907-489012:-1:exon
so has part: feature:488643-488690:-1:exon

XP_030313036.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:493258-493417:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:492695-492805:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:492449-492614:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:492219-492289:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:491571-491653:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:490735-490870:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:490421-490521:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:488907-489012:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:488643-488690:-1:exon

LOC115598838
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: LOC115598838
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(500037..500545)
location: region:500037-500545:-1
so has part: feature:500037-500545:-1:exon
subclass of: SO_0000011

115598838
type: Gene
SIO_000068: ncbigene

position:500037:-1
position: 500037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:500545:-1
position: 500545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:500037-500545:-1:exon

LOC115598838
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9244
nc RNA class: lncRNA
gene: LOC115598838
product: uncharacterized LOC115598838
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_003987966.1
SIO_010081: LOC115598838
subclass of: SO_0000673
so part of: LOC115598838
location: complement(join(500037..500099,500239..500354,500506..500545))
location: region:500037-500545:-1
so has part: feature:500506-500545:-1:exon
so has part: feature:500239-500354:-1:exon
so has part: feature:500037-500099:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:500506-500545:-1:exon

position:500506:-1
position: 500506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:500239-500354:-1:exon

position:500239:-1
position: 500239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:500354:-1
position: 500354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:500037-500099:-1:exon

position:500099:-1
position: 500099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115598855
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: LOC115598855
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(503710..510964)
location: region:503710-510964:-1
so has part: feature:503710-510964:-1:exon
subclass of: SO_0000010

115598855
type: Gene
SIO_000068: ncbigene

position:503710:-1
position: 503710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:510964:-1
position: 510964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:503710-510964:-1:exon

LOC115598855
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: LOC115598855
product: uncharacterized LOC115598855
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 39% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030457221.1
SIO_010081: LOC115598855
subclass of: SO_0000673
so part of: LOC115598855
location: complement(join(503710..503866,504102..504239,504331..504491,505030..505144,505239..505393,505849..505929,506095..506168,506386..506492,507905..508005,508219..508353,508682..508793,509052..509134,509700..510162,510195..510286,510738..510964))
location: region:503710-510964:-1
so has part: feature:510738-510964:-1:exon
so has part: feature:510195-510286:-1:exon
so has part: feature:509700-510162:-1:exon
so has part: feature:509052-509134:-1:exon
so has part: feature:508682-508793:-1:exon
so has part: feature:508219-508353:-1:exon
so has part: feature:507905-508005:-1:exon
so has part: feature:506386-506492:-1:exon
so has part: feature:506095-506168:-1:exon
so has part: feature:505849-505929:-1:exon
so has part: feature:505239-505393:-1:exon
so has part: feature:505030-505144:-1:exon
so has part: feature:504331-504491:-1:exon
so has part: feature:504102-504239:-1:exon
so has part: feature:503710-503866:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:510738-510964:-1:exon

position:510738:-1
position: 510738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:510195-510286:-1:exon

position:510195:-1
position: 510195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:510286:-1
position: 510286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:509700-510162:-1:exon

position:509700:-1
position: 509700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:510162:-1
position: 510162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:509052-509134:-1:exon

position:509052:-1
position: 509052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:509134:-1
position: 509134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:508682-508793:-1:exon

position:508682:-1
position: 508682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:508793:-1
position: 508793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:508219-508353:-1:exon

position:508219:-1
position: 508219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:508353:-1
position: 508353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:507905-508005:-1:exon

position:507905:-1
position: 507905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:508005:-1
position: 508005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:506386-506492:-1:exon

position:506386:-1
position: 506386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:506492:-1
position: 506492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:506095-506168:-1:exon

position:506095:-1
position: 506095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:506168:-1
position: 506168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:505849-505929:-1:exon

position:505849:-1
position: 505849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:505929:-1
position: 505929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:505239-505393:-1:exon

position:505239:-1
position: 505239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:505393:-1
position: 505393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:505030-505144:-1:exon

position:505030:-1
position: 505030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:505144:-1
position: 505144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:504331-504491:-1:exon

position:504331:-1
position: 504331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:504491:-1
position: 504491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:504102-504239:-1:exon

position:504102:-1
position: 504102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:504239:-1
position: 504239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:503710-503866:-1:exon

position:503866:-1
position: 503866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115598855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: LOC115598855
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: uncharacterized protein LOC115598855
translation: MAPQGNEDKKQRPRVGAGLENMGNTCFLNAVLQCLTYTPSLADYLLSREHSQSCVRPGNCVMCRVQEHVCKVLHATGSAIVPVDGALPGFLPSLDWRRELPTSSFLEIGEHFKLGVQEDAHEFLRCTLDAMQRACLCDGSLDTSCQHTVIHQIFGSFLRSRGTFPQLWLSLGLAVPFPLPVGSSCVCDWRRRDEQRKRHIRSPSPLAELSNFPSSLLLKLPVVSDAYDPFLDVLLDIKAAASLSEALDTFVKPELLDARSGFRCRHCGQVTAASKRLTIHWAPKVLTVGLKRFEDVSGGKITKVVRYPKVLDLGPYTTAGEAQHYSLYAVLVHKGESCYVGHYFCYIKASNGLWYKMDDSSVTPCDVNTALQQEAYLLFYDRIEQSSGSRLPLAWMKDEEKEISLPIPNKVAQLQETDSWYSSGKKEEGQETVEDAPKDLGEDQDLKWLRDVIVNLSPSVLRSLQDVSQAKQILKCVHRNAEHVRTEPGQFLLRSVLGLLSECCPEETVQILLMISPSCDNAALAVWEMLLSLPSTSGTVLDRLLSVIQGWKAKCAVPPAKQVLSRLSQQPRCQEILQLLFPRLLMSVIYKVSLATVILGREPPQADQASALGVAVEGIKALLEAAGYQGHVENIQKEGGWDMMLDMDTLESGVTLLAREMRKSPAKQQRLLFQHVKEILNQRREWQFNFAMTFYTEVSLVGSSASARCS
SIO_010081: LOC115598855
subclass of: SO_0000673
so part of: LOC115598855
location: complement(join(503710..503866,504102..504239,504331..504491,505030..505144,505239..505393,505849..505929,506095..506168,506386..506492,507905..508005,508219..508353,508682..508793,509052..509134,509700..510162,510195..510286,510738..510897))
location: region:503710-510897:-1
so has part: feature:510738-510897:-1:exon
so has part: feature:510195-510286:-1:exon
so has part: feature:509700-510162:-1:exon
so has part: feature:509052-509134:-1:exon
so has part: feature:508682-508793:-1:exon
so has part: feature:508219-508353:-1:exon
so has part: feature:507905-508005:-1:exon
so has part: feature:506386-506492:-1:exon
so has part: feature:506095-506168:-1:exon
so has part: feature:505849-505929:-1:exon
so has part: feature:505239-505393:-1:exon
so has part: feature:505030-505144:-1:exon
so has part: feature:504331-504491:-1:exon
so has part: feature:504102-504239:-1:exon
so has part: feature:503710-503866:-1:exon

XP_030313081.1
type: Protein
SIO_000068: ncbiprotein

position:510897:-1
position: 510897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:510738-510897:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:510195-510286:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:509700-510162:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:509052-509134:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:508682-508793:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:508219-508353:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:507905-508005:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:506386-506492:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:506095-506168:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:505849-505929:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:505239-505393:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:505030-505144:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:504331-504491:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:504102-504239:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:503710-503866:-1:exon

LOC103528743
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: LOC103528743
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <521165..526868
location: region:521165-526868:1
so has part: feature:521165-526868:1:exon
subclass of: SO_0000010

103528743
type: Gene
SIO_000068: ncbigene

position:521165:1
position: 521165
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:526868:1
position: 526868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:521165-526868:1:exon

LOC103528743
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: LOC103528743
product: reticulocalbin-2-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
transcript id: XM_030457253.1
SIO_010081: LOC103528743
subclass of: SO_0000673
so part of: LOC103528743
location: join(<521165..521299,522800..522895,523966..524107,526036..526187,526846..526868)
location: region:521165-526868:1
so has part: feature:521165-521299:1:exon
so has part: feature:522800-522895:1:exon
so has part: feature:523966-524107:1:exon
so has part: feature:526036-526187:1:exon
so has part: feature:526846-526868:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:521165-521299:1:exon

position:521299:1
position: 521299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:522800-522895:1:exon

position:522800:1
position: 522800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:522895:1
position: 522895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:523966-524107:1:exon

position:523966:1
position: 523966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:524107:1
position: 524107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:526036-526187:1:exon

position:526036:1
position: 526036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:526187:1
position: 526187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:526846-526868:1:exon

position:526846:1
position: 526846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC103528743
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: LOC103528743
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:522883..522885,aa:OTHER)
product: LOW QUALITY PROTEIN: reticulocalbin-2-like
translation: SKLHLKEKRCFKKANSDDILDINVDEFTAFGHPEEVEYMMGRLGREFVIQEALDKHDKEGDGFGGLEKFLDYXRDITAREGPEWVCVEKDQFVNDCVKDDDGIPNPQELLSWRVPYNEGIGQEEALHLIKEMDLNNDKKLLKNRDFFLNSEARDYGSQLEDERFHHEELETTYFLLTVGHP
SIO_010081: LOC103528743
subclass of: SO_0000673
so part of: LOC103528743
location: join(<521165..521299,522800..522895,523966..524107,526036..526187,526846..526868)
location: region:521165-526868:1
so has part: feature:521165-521299:1:exon
so has part: feature:522800-522895:1:exon
so has part: feature:523966-524107:1:exon
so has part: feature:526036-526187:1:exon
so has part: feature:526846-526868:1:exon

XP_030313113.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:521165-521299:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:522800-522895:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:523966-524107:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:526036-526187:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:526846-526868:1:exon

PSTPIP1
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: PSTPIP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 533683..582696
location: region:533683-582696:1
so has part: feature:533683-582696:1:exon
subclass of: SO_0000010

103528741
type: Gene
SIO_000068: ncbigene

position:533683:1
position: 533683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:582696:1
position: 582696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:533683-582696:1:exon

PSTPIP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: PSTPIP1
product: proline-serine-threonine phosphatase interacting protein 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030456984.1
SIO_010081: PSTPIP1
subclass of: SO_0000673
so part of: PSTPIP1
location: join(533683..533930,551756..551856,555194..555268,565164..565198,565770..565876,567665..567727,568797..568895,570655..570700,571476..571555,574283..574381,575068..575164,577182..577266,578746..578813,580063..580163,582131..582696)
location: region:533683-582696:1
so has part: feature:533683-533930:1:exon
so has part: feature:551756-551856:1:exon
so has part: feature:555194-555268:1:exon
so has part: feature:565164-565198:1:exon
so has part: feature:565770-565876:1:exon
so has part: feature:567665-567727:1:exon
so has part: feature:568797-568895:1:exon
so has part: feature:570655-570700:1:exon
so has part: feature:571476-571555:1:exon
so has part: feature:574283-574381:1:exon
so has part: feature:575068-575164:1:exon
so has part: feature:577182-577266:1:exon
so has part: feature:578746-578813:1:exon
so has part: feature:580063-580163:1:exon
so has part: feature:582131-582696:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:533683-533930:1:exon

position:533930:1
position: 533930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:551756-551856:1:exon

position:551756:1
position: 551756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:551856:1
position: 551856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:555194-555268:1:exon

position:555194:1
position: 555194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:555268:1
position: 555268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:565164-565198:1:exon

position:565164:1
position: 565164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:565198:1
position: 565198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:565770-565876:1:exon

position:565770:1
position: 565770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:565876:1
position: 565876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:567665-567727:1:exon

position:567665:1
position: 567665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:567727:1
position: 567727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:568797-568895:1:exon

position:568797:1
position: 568797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:568895:1
position: 568895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:570655-570700:1:exon

position:570655:1
position: 570655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:570700:1
position: 570700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:571476-571555:1:exon

position:571476:1
position: 571476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:571555:1
position: 571555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:574283-574381:1:exon

position:574283:1
position: 574283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:574381:1
position: 574381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:575068-575164:1:exon

position:575068:1
position: 575068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:575164:1
position: 575164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:577182-577266:1:exon

position:577182:1
position: 577182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:577266:1
position: 577266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:578746-578813:1:exon

position:578746:1
position: 578746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:578813:1
position: 578813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:580063-580163:1:exon

position:580063:1
position: 580063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:580163:1
position: 580163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:582131-582696:1:exon

position:582131:1
position: 582131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PSTPIP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: PSTPIP1
product: proline-serine-threonine phosphatase interacting protein 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030456985.1
SIO_010081: PSTPIP1
subclass of: SO_0000673
so part of: PSTPIP1
location: join(533683..533930,551756..551856,555194..555268,565164..565198,565770..565876,567665..567727,568797..568895,570655..570700,571476..571555,574283..574381,575068..575164,577182..577266,578746..578813,580066..580163,582131..582696)
location: region:533683-582696:1
so has part: feature:533683-533930:1:exon
so has part: feature:551756-551856:1:exon
so has part: feature:555194-555268:1:exon
so has part: feature:565164-565198:1:exon
so has part: feature:565770-565876:1:exon
so has part: feature:567665-567727:1:exon
so has part: feature:568797-568895:1:exon
so has part: feature:570655-570700:1:exon
so has part: feature:571476-571555:1:exon
so has part: feature:574283-574381:1:exon
so has part: feature:575068-575164:1:exon
so has part: feature:577182-577266:1:exon
so has part: feature:578746-578813:1:exon
so has part: feature:580066-580163:1:exon
so has part: feature:582131-582696:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:533683-533930:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:551756-551856:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:555194-555268:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:565164-565198:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:565770-565876:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:567665-567727:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:568797-568895:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:570655-570700:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:571476-571555:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:574283-574381:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:575068-575164:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:577182-577266:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:578746-578813:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:580066-580163:1:exon

position:580066:1
position: 580066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:582131-582696:1:exon

PSTPIP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: PSTPIP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proline-serine-threonine phosphatase-interacting protein 1 isoform X1
translation: MSQMQFKDAFWCKEFTSHTGYEVLVQRLLDGRKMCKDVEDLLRQRAQAEERYGKELIQIARKAGGQTEINTLKAAFERLKQQIESVGNSHIQLAAMLKDELKGIEEFRERQKEQRKKYESAMERVHKSKLSLYKKTMESKKTYEQKCKEADEAEQSLERTSASGTQKQTEKSQNKAKQCRDAANEAENVYKQNIEQLDKVRTEWEQEHIKTCEVFQLQECDRIAVLRNSLWAHCNQLSMQCVKDDQLYEEVRVSLENCVVESDIDCFVKTNMTGTQPPDAIGYENYYSRELNRSNSSPTQSCGMMKRFAELLHGSSKNTESAPPSAPPLAVKTDGVYASIFVNEQAGNTSSQDYRVLYDYTAQSMDELDISEGDIVAVIEENENGWWTAERNGQRGFVPGTYLEKL
SIO_010081: PSTPIP1
subclass of: SO_0000673
so part of: PSTPIP1
location: join(533898..533930,551756..551856,555194..555268,565164..565198,565770..565876,567665..567727,568797..568895,570655..570700,571476..571555,574283..574381,575068..575164,577182..577266,578746..578813,580063..580163,582131..582262)
location: region:533898-582262:1
so has part: feature:533898-533930:1:exon
so has part: feature:551756-551856:1:exon
so has part: feature:555194-555268:1:exon
so has part: feature:565164-565198:1:exon
so has part: feature:565770-565876:1:exon
so has part: feature:567665-567727:1:exon
so has part: feature:568797-568895:1:exon
so has part: feature:570655-570700:1:exon
so has part: feature:571476-571555:1:exon
so has part: feature:574283-574381:1:exon
so has part: feature:575068-575164:1:exon
so has part: feature:577182-577266:1:exon
so has part: feature:578746-578813:1:exon
so has part: feature:580063-580163:1:exon
so has part: feature:582131-582262:1:exon

XP_030312844.1
type: Protein
SIO_000068: ncbiprotein

position:533898:1
position: 533898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:582262:1
position: 582262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:533898-533930:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:551756-551856:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:555194-555268:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:565164-565198:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:565770-565876:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:567665-567727:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:568797-568895:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:570655-570700:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:571476-571555:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:574283-574381:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:575068-575164:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:577182-577266:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:578746-578813:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:580063-580163:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:582131-582262:1:exon

PSTPIP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: PSTPIP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proline-serine-threonine phosphatase-interacting protein 1 isoform X2
translation: MSQMQFKDAFWCKEFTSHTGYEVLVQRLLDGRKMCKDVEDLLRQRAQAEERYGKELIQIARKAGGQTEINTLKAAFERLKQQIESVGNSHIQLAAMLKDELKGIEEFRERQKEQRKKYESAMERVHKSKLSLYKKTMESKKTYEQKCKEADEAEQSLERTSASGTQKQTEKSQNKAKQCRDAANEAENVYKQNIEQLDKVRTEWEQEHIKTCEVFQLQECDRIAVLRNSLWAHCNQLSMQCVKDDQLYEEVRVSLENCVVESDIDCFVKTNMTGTQPPDAIGYENYYSRELNRSNSSPTQSCGMMKRFAELLHGSSKNTESAPPSAPPLVKTDGVYASIFVNEQAGNTSSQDYRVLYDYTAQSMDELDISEGDIVAVIEENENGWWTAERNGQRGFVPGTYLEKL
SIO_010081: PSTPIP1
subclass of: SO_0000673
so part of: PSTPIP1
location: join(533898..533930,551756..551856,555194..555268,565164..565198,565770..565876,567665..567727,568797..568895,570655..570700,571476..571555,574283..574381,575068..575164,577182..577266,578746..578813,580066..580163,582131..582262)
location: region:533898-582262:1
so has part: feature:533898-533930:1:exon
so has part: feature:551756-551856:1:exon
so has part: feature:555194-555268:1:exon
so has part: feature:565164-565198:1:exon
so has part: feature:565770-565876:1:exon
so has part: feature:567665-567727:1:exon
so has part: feature:568797-568895:1:exon
so has part: feature:570655-570700:1:exon
so has part: feature:571476-571555:1:exon
so has part: feature:574283-574381:1:exon
so has part: feature:575068-575164:1:exon
so has part: feature:577182-577266:1:exon
so has part: feature:578746-578813:1:exon
so has part: feature:580066-580163:1:exon
so has part: feature:582131-582262:1:exon

XP_030312845.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:533898-533930:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:551756-551856:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:555194-555268:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:565164-565198:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:565770-565876:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:567665-567727:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:568797-568895:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:570655-570700:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:571476-571555:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:574283-574381:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:575068-575164:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:577182-577266:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:578746-578813:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:580066-580163:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:582131-582262:1:exon

TSPAN3
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: TSPAN3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(596683..619588)
location: region:596683-619588:-1
so has part: feature:596683-619588:-1:exon
subclass of: SO_0000010

103528740
type: Gene
SIO_000068: ncbigene

position:596683:-1
position: 596683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:619588:-1
position: 619588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:596683-619588:-1:exon

TSPAN3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: TSPAN3
product: tetraspanin 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 15 ESTs, 3 long SRA reads, 20 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_030457021.1
SIO_010081: TSPAN3
subclass of: SO_0000673
so part of: TSPAN3
location: complement(join(596683..597643,604167..604250,604535..604687,605637..605738,608211..608285,609315..609506,619395..619588))
location: region:596683-619588:-1
so has part: feature:619395-619588:-1:exon
so has part: feature:609315-609506:-1:exon
so has part: feature:608211-608285:-1:exon
so has part: feature:605637-605738:-1:exon
so has part: feature:604535-604687:-1:exon
so has part: feature:604167-604250:-1:exon
so has part: feature:596683-597643:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:619395-619588:-1:exon

position:619395:-1
position: 619395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:609315-609506:-1:exon

position:609315:-1
position: 609315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:609506:-1
position: 609506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:608211-608285:-1:exon

position:608211:-1
position: 608211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:608285:-1
position: 608285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:605637-605738:-1:exon

position:605637:-1
position: 605637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:605738:-1
position: 605738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:604535-604687:-1:exon

position:604535:-1
position: 604535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:604687:-1
position: 604687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:604167-604250:-1:exon

position:604167:-1
position: 604167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:604250:-1
position: 604250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:596683-597643:-1:exon

position:597643:-1
position: 597643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TSPAN3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: TSPAN3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tetraspanin-3
translation: MGQCGITSSKTVLVFLNLIFWAAAGILCYVGATVFITYDDYDHFFEDFYTLVPAVIIIAVGTLLFIIGLIGCCATIRESRCGLAIFVIILLLVFITEVMVVVLGYIFRAKVEKGVNRSIREVYNGYNGTHPDAGSRAIDYVQRQLRCCGIRNYSDWENTDWFKETKNNSVPLSCCKAALSNCTGSLTHPTDLYSEGCEALVVKKLQDIMMYVIWAALAFAAVQLLGMLCACIVLCRRSRDPAYELLIIGGTYA
SIO_010081: TSPAN3
subclass of: SO_0000673
so part of: TSPAN3
location: complement(join(597551..597643,604167..604250,604535..604687,605637..605738,608211..608285,609315..609506,619395..619457))
location: region:597551-619457:-1
so has part: feature:619395-619457:-1:exon
so has part: feature:609315-609506:-1:exon
so has part: feature:608211-608285:-1:exon
so has part: feature:605637-605738:-1:exon
so has part: feature:604535-604687:-1:exon
so has part: feature:604167-604250:-1:exon
so has part: feature:597551-597643:-1:exon

XP_030312881.1
type: Protein
SIO_000068: ncbiprotein

position:597551:-1
position: 597551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:619457:-1
position: 619457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:619395-619457:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:609315-609506:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:608211-608285:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:605637-605738:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:604535-604687:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:604167-604250:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:597551-597643:-1:exon

PEAK1
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: PEAK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(630387..736621)
location: region:630387-736621:-1
so has part: feature:630387-736621:-1:exon
subclass of: SO_0000010

103528733
type: Gene
SIO_000068: ncbigene

position:630387:-1
position: 630387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:736621:-1
position: 736621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:630387-736621:-1:exon

PEAK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: PEAK1
product: pseudopodium enriched atypical kinase 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 6 long SRA reads, 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030456964.1
SIO_010081: PEAK1
subclass of: SO_0000673
so part of: PEAK1
location: complement(join(630387..637597,646972..647720,654996..655192,662692..665973,687728..687890,736463..736621))
location: region:630387-736621:-1
so has part: feature:736463-736621:-1:exon
so has part: feature:687728-687890:-1:exon
so has part: feature:662692-665973:-1:exon
so has part: feature:654996-655192:-1:exon
so has part: feature:646972-647720:-1:exon
so has part: feature:630387-637597:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:736463-736621:-1:exon

position:736463:-1
position: 736463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:687728-687890:-1:exon

position:687728:-1
position: 687728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:687890:-1
position: 687890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:662692-665973:-1:exon

position:662692:-1
position: 662692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:665973:-1
position: 665973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:654996-655192:-1:exon

position:654996:-1
position: 654996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:655192:-1
position: 655192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:646972-647720:-1:exon

position:646972:-1
position: 646972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:647720:-1
position: 647720
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:630387-637597:-1:exon

position:637597:-1
position: 637597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PEAK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: PEAK1
product: pseudopodium enriched atypical kinase 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 4 long SRA reads, 3 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030456963.1
SIO_010081: PEAK1
subclass of: SO_0000673
so part of: PEAK1
location: complement(join(630387..637597,646972..647720,654996..655192,656971..657087,662692..665973,687728..687890,736463..736621))
location: region:630387-736621:-1
so has part: feature:736463-736621:-1:exon
so has part: feature:687728-687890:-1:exon
so has part: feature:662692-665973:-1:exon
so has part: feature:656971-657087:-1:exon
so has part: feature:654996-655192:-1:exon
so has part: feature:646972-647720:-1:exon
so has part: feature:630387-637597:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:736463-736621:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:687728-687890:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:662692-665973:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:656971-657087:-1:exon

position:656971:-1
position: 656971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:657087:-1
position: 657087
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:654996-655192:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:646972-647720:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:630387-637597:-1:exon

PEAK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: PEAK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: inactive tyrosine-protein kinase PEAK1 isoform X2
translation: MSACNAFTEHVWKPGECKNCFKPKSLHQLNPVSEKKPLAHGELKSNANQSNSHRGRNTGNFRPPVAKKPTIAVKPTMMVVDGQAVCGEISTRDCFENKSVPAGWNRNKTVLNKKPLNNNNNNEDGIEGYSHVPRPYGNKDGVGKIPNNNNNGLTEVLKEIVGLDTTPQLTGNEMNSRETFLGRINDCYKRSLERKIPPSCMMGGMKDSHGKHVILSGSTEVISNEGGRFCYPEFSSGDESEDDTFFGSMQEEHESWDESDEELLAMEIRMRGQPRFANFRANTLSPVQFCVDKKWNTVPLRNKSLQRICAVDYDDSYDEILNGYGEEAVILYGQESMQSMVSSDSTSPDSSLTEESHSGTTSSSSQKLCNGGLSPSTPQDLKLVEPEYESLCDNQEVKDVSKVPKNVPKSLETHKTVLALRLEEKDGKIAVQTDKQENKSSSDVAGQAVTINLVPVEEQAKPYRVVNMEQPVCKPYTIVDVSAAMTNECKENQTETSETKNTSSNPSSPVTPGTPITTSAASPVRVNANLKKSSAIRYQEVWTSSTSPRQKIPKVELISSNSGPSVPPRKATHKSAPTSPTATNVSSKTIPVKSPNLSEIKFNSYNNAGMPPFPIIIHDEPTYAKSSKNAIKVPIVINPNAYDNLAIYKSFLGTSGELSIKDKTTSVISHTYEEIETESKMAEAIGSQPTDFSQAKGVTNSSECRLGSVAQKVQEFNSCLSKSQISPQRSHSSDHSSPSRVQKTTQEPAAKIDVTPEASVGSSSGRENASTVLSQIVASIQPPQSPPETPQSGPKPCSIEELYSLPPDGDSTSNTLVRPKSLFTSQSDTESSKPVENCAIKIPKESLSQPVATPSPKPARATPNTTSPKTEQAPPFPPPRSTSSPYHASNLLQRHFGNWAKPNSPTRSTEAESILHSEGRRAADAKPKRWISFKSFFRRRKADDEEDKEKEREKGKLVGLDGTVIHMLPPPPVQRHHWFSEAKSDSSEKPSIVFMYRCELAQDEPKADYQNKSGAEAAAADALAKDQGETEEKSPQSSEQKIASHSSPPQMPKKIPSQVPDDTTLEELSPRVPRAVFVKQDNGGCASVIPVSSVRVPQGEEENEEASNSPDLNPCSATYSNLGQSRAAMIPPKQPRQPKGALDDAIAFGGLADQETMSNLQPTPPPLPKKTILRANTEPTARELQKQALESNLCIVANPTYDIDTNWEASSACSSVSLELKILDNESGDSLDRPTEKLRATTSATNSVSSLTTISIKDRCSNSMESLTGRRLLQTKQGKGAQKPQRQALYRGIENREEVVGKIRSLHTDSLKKLALKCEDLFMAGQKDQLRFGVDSWSDFRLTSDKPCCEAGDAVYYPASYAKDPLNNYAVKICKSKAKESQQYYHSLSIRQSLAINFNIQQDCGHFLAEVPVRLLPWEDADAAEVEEDEEKEPEEKNRDALSNTEASQKDSSSNQGTISKPRSRVVVITREVPYLTVADFVRESVPRHAKSPDLYERQVCLLLLQLCLGLEHLKPYHITHCDLRLENLLLVHSRPGGSPLSSESTEPSPNSACPARLIVSNFSQAKQKSHMVDPEVLRDQSRLAPEIITATQYKKCDEFQTGILIYEMLHLPNPFDENPELKEKEYTRADLPKIPCRSLYSQGLQQLASCLLNPNPSERILISEAKGVLQCLLWGPREDLFHALSTSSNPSRRDAVLQNWLDIKRTLLMIKFAEKSFDRDCGIFLEDWLCCQYLAFATIDSLRRIVRIMQQH
SIO_010081: PEAK1
subclass of: SO_0000673
so part of: PEAK1
location: complement(join(636452..637597,646972..647720,654996..655192,662692..665861))
location: region:636452-665861:-1
so has part: feature:662692-665861:-1:exon
so has part: feature:654996-655192:-1:exon
so has part: feature:646972-647720:-1:exon
so has part: feature:636452-637597:-1:exon

XP_030312824.1
type: Protein
SIO_000068: ncbiprotein

position:636452:-1
position: 636452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:665861:-1
position: 665861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:662692-665861:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:654996-655192:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:646972-647720:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:636452-637597:-1:exon

PEAK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: PEAK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: inactive tyrosine-protein kinase PEAK1 isoform X1
translation: MSACNAFTEHVWKPGECKNCFKPKSLHQLNPVSEKKPLAHGELKSNANQSNSHRGRNTGNFRPPVAKKPTIAVKPTMMVVDGQAVCGEISTRDCFENKSVPAGWNRNKTVLNKKPLNNNNNNEDGIEGYSHVPRPYGNKDGVGKIPNNNNNGLTEVLKEIVGLDTTPQLTGNEMNSRETFLGRINDCYKRSLERKIPPSCMMGGMKDSHGKHVILSGSTEVISNEGGRFCYPEFSSGDESEDDTFFGSMQEEHESWDESDEELLAMEIRMRGQPRFANFRANTLSPVQFCVDKKWNTVPLRNKSLQRICAVDYDDSYDEILNGYGEEAVILYGQESMQSMVSSDSTSPDSSLTEESHSGTTSSSSQKLCNGGLSPSTPQDLKLVEPEYESLCDNQEVKDVSKVPKNVPKSLETHKTVLALRLEEKDGKIAVQTDKQENKSSSDVAGQAVTINLVPVEEQAKPYRVVNMEQPVCKPYTIVDVSAAMTNECKENQTETSETKNTSSNPSSPVTPGTPITTSAASPVRVNANLKKSSAIRYQEVWTSSTSPRQKIPKVELISSNSGPSVPPRKATHKSAPTSPTATNVSSKTIPVKSPNLSEIKFNSYNNAGMPPFPIIIHDEPTYAKSSKNAIKVPIVINPNAYDNLAIYKSFLGTSGELSIKDKTTSVISHTYEEIETESKMAEAIGSQPTDFSQAKGVTNSSECRLGSVAQKVQEFNSCLSKSQISPQRSHSSDHSSPSRVQKTTQEPAAKIDVTPEASVGSSSGRENASTVLSQIVASIQPPQSPPETPQSGPKPCSIEELYSLPPDGDSTSNTLVRPKSLFTSQSDTESSKPVENCAIKIPKESLSQPVATPSPKPARATPNTTSPKTEQAPPFPPPRSTSSPYHASNLLQRHFGNWAKPNSPTRSTEAESILHSEGRRAADAKPKRWISFKSFFRRRKADDEEDKEKEREKGKLVGLDGTVIHMLPPPPVQRHHWFSEAKSDSSEKPSIVFMYRCELAQDEPKADYQNKSGAEAAAADALAKDQGETEEKSPQSSEQKIASHSSPPQMPKKIPSTSEHCGINGSPEFQDMIKRLKKALKEFPLMGNCVSEYSGQVPDDTTLEELSPRVPRAVFVKQDNGGCASVIPVSSVRVPQGEEENEEASNSPDLNPCSATYSNLGQSRAAMIPPKQPRQPKGALDDAIAFGGLADQETMSNLQPTPPPLPKKTILRANTEPTARELQKQALESNLCIVANPTYDIDTNWEASSACSSVSLELKILDNESGDSLDRPTEKLRATTSATNSVSSLTTISIKDRCSNSMESLTGRRLLQTKQGKGAQKPQRQALYRGIENREEVVGKIRSLHTDSLKKLALKCEDLFMAGQKDQLRFGVDSWSDFRLTSDKPCCEAGDAVYYPASYAKDPLNNYAVKICKSKAKESQQYYHSLSIRQSLAINFNIQQDCGHFLAEVPVRLLPWEDADAAEVEEDEEKEPEEKNRDALSNTEASQKDSSSNQGTISKPRSRVVVITREVPYLTVADFVRESVPRHAKSPDLYERQVCLLLLQLCLGLEHLKPYHITHCDLRLENLLLVHSRPGGSPLSSESTEPSPNSACPARLIVSNFSQAKQKSHMVDPEVLRDQSRLAPEIITATQYKKCDEFQTGILIYEMLHLPNPFDENPELKEKEYTRADLPKIPCRSLYSQGLQQLASCLLNPNPSERILISEAKGVLQCLLWGPREDLFHALSTSSNPSRRDAVLQNWLDIKRTLLMIKFAEKSFDRDCGIFLEDWLCCQYLAFATIDSLRRIVRIMQQH
SIO_010081: PEAK1
subclass of: SO_0000673
so part of: PEAK1
location: complement(join(636452..637597,646972..647720,654996..655192,656971..657087,662692..665861))
location: region:636452-665861:-1
so has part: feature:662692-665861:-1:exon
so has part: feature:656971-657087:-1:exon
so has part: feature:654996-655192:-1:exon
so has part: feature:646972-647720:-1:exon
so has part: feature:636452-637597:-1:exon

XP_030312823.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:662692-665861:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:656971-657087:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:654996-655192:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:646972-647720:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:636452-637597:-1:exon

HMG20A
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: HMG20A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 736857..770544
location: region:736857-770544:1
so has part: feature:736857-770544:1:exon
subclass of: SO_0000010

103528732
type: Gene
SIO_000068: ncbigene

position:736857:1
position: 736857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:770544:1
position: 770544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:736857-770544:1:exon

HMG20A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: HMG20A
product: high mobility group 20A, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 3 long SRA reads, 11 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_030457004.1
SIO_010081: HMG20A
subclass of: SO_0000673
so part of: HMG20A
location: join(736857..737029,739150..739267,753971..754063,756108..756255,757613..757828,759904..760036,760374..760405,763784..763859,764741..764956,765581..765724,767849..770544)
location: region:736857-770544:1
so has part: feature:736857-737029:1:exon
so has part: feature:739150-739267:1:exon
so has part: feature:753971-754063:1:exon
so has part: feature:756108-756255:1:exon
so has part: feature:757613-757828:1:exon
so has part: feature:759904-760036:1:exon
so has part: feature:760374-760405:1:exon
so has part: feature:763784-763859:1:exon
so has part: feature:764741-764956:1:exon
so has part: feature:765581-765724:1:exon
so has part: feature:767849-770544:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:736857-737029:1:exon

position:737029:1
position: 737029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:739150-739267:1:exon

position:739150:1
position: 739150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:739267:1
position: 739267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:753971-754063:1:exon

position:753971:1
position: 753971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:754063:1
position: 754063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:756108-756255:1:exon

position:756108:1
position: 756108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:756255:1
position: 756255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:757613-757828:1:exon

position:757613:1
position: 757613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:757828:1
position: 757828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:759904-760036:1:exon

position:759904:1
position: 759904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:760036:1
position: 760036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:760374-760405:1:exon

position:760374:1
position: 760374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:760405:1
position: 760405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:763784-763859:1:exon

position:763784:1
position: 763784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:763859:1
position: 763859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:764741-764956:1:exon

position:764741:1
position: 764741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:764956:1
position: 764956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:765581-765724:1:exon

position:765581:1
position: 765581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:765724:1
position: 765724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:767849-770544:1:exon

position:767849:1
position: 767849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HMG20A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: HMG20A
product: high mobility group 20A, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 1 long SRA read, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030457007.1
SIO_010081: HMG20A
subclass of: SO_0000673
so part of: HMG20A
location: join(736951..737029,739150..739267,752589..752690,753971..754063,756108..756255,757613..757828,759904..760036,760374..760405,763784..763859,764741..764956,765581..765724,767849..770534)
location: region:736951-770534:1
so has part: feature:736951-737029:1:exon
so has part: feature:739150-739267:1:exon
so has part: feature:752589-752690:1:exon
so has part: feature:753971-754063:1:exon
so has part: feature:756108-756255:1:exon
so has part: feature:757613-757828:1:exon
so has part: feature:759904-760036:1:exon
so has part: feature:760374-760405:1:exon
so has part: feature:763784-763859:1:exon
so has part: feature:764741-764956:1:exon
so has part: feature:765581-765724:1:exon
so has part: feature:767849-770534:1:exon

position:736951:1
position: 736951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:770534:1
position: 770534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:736951-737029:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:739150-739267:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:752589-752690:1:exon

position:752589:1
position: 752589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:752690:1
position: 752690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:753971-754063:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:756108-756255:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:757613-757828:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:759904-760036:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:760374-760405:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:763784-763859:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:764741-764956:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:765581-765724:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:767849-770534:1:exon

HMG20A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: HMG20A
product: high mobility group 20A, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 1 long SRA read, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_030457006.1
SIO_010081: HMG20A
subclass of: SO_0000673
so part of: HMG20A
location: join(736951..737029,739150..739267,753968..754063,756108..756255,757613..757828,759904..760036,760374..760405,763784..763859,764741..764956,765581..765724,767849..770534)
location: region:736951-770534:1
so has part: feature:736951-737029:1:exon
so has part: feature:739150-739267:1:exon
so has part: feature:753968-754063:1:exon
so has part: feature:756108-756255:1:exon
so has part: feature:757613-757828:1:exon
so has part: feature:759904-760036:1:exon
so has part: feature:760374-760405:1:exon
so has part: feature:763784-763859:1:exon
so has part: feature:764741-764956:1:exon
so has part: feature:765581-765724:1:exon
so has part: feature:767849-770534:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:736951-737029:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:739150-739267:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:753968-754063:1:exon

position:753968:1
position: 753968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:756108-756255:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:757613-757828:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:759904-760036:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:760374-760405:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:763784-763859:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:764741-764956:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:765581-765724:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:767849-770534:1:exon

HMG20A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: HMG20A
product: high mobility group 20A, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 1 long SRA read, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030457009.1
SIO_010081: HMG20A
subclass of: SO_0000673
so part of: HMG20A
location: join(737010..737029,753971..754063,756108..756255,757613..757828,759904..760036,760374..760405,763784..763859,764741..764956,765581..765724,767849..770534)
location: region:737010-770534:1
so has part: feature:737010-737029:1:exon
so has part: feature:753971-754063:1:exon
so has part: feature:756108-756255:1:exon
so has part: feature:757613-757828:1:exon
so has part: feature:759904-760036:1:exon
so has part: feature:760374-760405:1:exon
so has part: feature:763784-763859:1:exon
so has part: feature:764741-764956:1:exon
so has part: feature:765581-765724:1:exon
so has part: feature:767849-770534:1:exon

position:737010:1
position: 737010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:737010-737029:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:753971-754063:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:756108-756255:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:757613-757828:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:759904-760036:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:760374-760405:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:763784-763859:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:764741-764956:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:765581-765724:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:767849-770534:1:exon

HMG20A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: HMG20A
product: high mobility group 20A, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 1 long SRA read, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030457008.1
SIO_010081: HMG20A
subclass of: SO_0000673
so part of: HMG20A
location: join(737013..737029,753968..754063,756108..756255,757613..757828,759904..760036,760374..760405,763784..763859,764741..764956,765581..765724,767849..770534)
location: region:737013-770534:1
so has part: feature:737013-737029:1:exon
so has part: feature:753968-754063:1:exon
so has part: feature:756108-756255:1:exon
so has part: feature:757613-757828:1:exon
so has part: feature:759904-760036:1:exon
so has part: feature:760374-760405:1:exon
so has part: feature:763784-763859:1:exon
so has part: feature:764741-764956:1:exon
so has part: feature:765581-765724:1:exon
so has part: feature:767849-770534:1:exon

position:737013:1
position: 737013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:737013-737029:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:753968-754063:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:756108-756255:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:757613-757828:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:759904-760036:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:760374-760405:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:763784-763859:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:764741-764956:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:765581-765724:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:767849-770534:1:exon

HMG20A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: HMG20A
product: high mobility group 20A, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 1 long SRA read, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_030457005.1
SIO_010081: HMG20A
subclass of: SO_0000673
so part of: HMG20A
location: join(737199..737292,739150..739267,753971..754063,756108..756255,757613..757828,759904..760036,760374..760405,763784..763859,764741..764956,765581..765724,767849..770540)
location: region:737199-770540:1
so has part: feature:737199-737292:1:exon
so has part: feature:739150-739267:1:exon
so has part: feature:753971-754063:1:exon
so has part: feature:756108-756255:1:exon
so has part: feature:757613-757828:1:exon
so has part: feature:759904-760036:1:exon
so has part: feature:760374-760405:1:exon
so has part: feature:763784-763859:1:exon
so has part: feature:764741-764956:1:exon
so has part: feature:765581-765724:1:exon
so has part: feature:767849-770540:1:exon

position:737199:1
position: 737199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:770540:1
position: 770540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:737199-737292:1:exon

position:737292:1
position: 737292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:739150-739267:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:753971-754063:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:756108-756255:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:757613-757828:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:759904-760036:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:760374-760405:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:763784-763859:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:764741-764956:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:765581-765724:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:767849-770540:1:exon

HMG20A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: HMG20A
product: high mobility group 20A, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030457003.1
SIO_010081: HMG20A
subclass of: SO_0000673
so part of: HMG20A
location: join(746196..746267,753968..754063,756108..756255,757616..757828,759904..760036,760374..760405,763784..763859,764741..764956,765581..765724,767849..770534)
location: region:746196-770534:1
so has part: feature:746196-746267:1:exon
so has part: feature:753968-754063:1:exon
so has part: feature:756108-756255:1:exon
so has part: feature:757616-757828:1:exon
so has part: feature:759904-760036:1:exon
so has part: feature:760374-760405:1:exon
so has part: feature:763784-763859:1:exon
so has part: feature:764741-764956:1:exon
so has part: feature:765581-765724:1:exon
so has part: feature:767849-770534:1:exon

position:746196:1
position: 746196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:746196-746267:1:exon

position:746267:1
position: 746267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:753968-754063:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:756108-756255:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:757616-757828:1:exon

position:757616:1
position: 757616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:759904-760036:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:760374-760405:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:763784-763859:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:764741-764956:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:765581-765724:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:767849-770534:1:exon

HMG20A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: HMG20A
product: high mobility group 20A, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 1 long SRA read, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030457002.1
SIO_010081: HMG20A
subclass of: SO_0000673
so part of: HMG20A
location: join(746198..746267,753968..754063,756108..756255,757613..757828,759904..760036,760374..760405,763784..763859,764741..764956,765581..765724,767849..770534)
location: region:746198-770534:1
so has part: feature:746198-746267:1:exon
so has part: feature:753968-754063:1:exon
so has part: feature:756108-756255:1:exon
so has part: feature:757613-757828:1:exon
so has part: feature:759904-760036:1:exon
so has part: feature:760374-760405:1:exon
so has part: feature:763784-763859:1:exon
so has part: feature:764741-764956:1:exon
so has part: feature:765581-765724:1:exon
so has part: feature:767849-770534:1:exon

position:746198:1
position: 746198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:746198-746267:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:753968-754063:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:756108-756255:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:757613-757828:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:759904-760036:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:760374-760405:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:763784-763859:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:764741-764956:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:765581-765724:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:767849-770534:1:exon

HMG20A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: HMG20A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: high mobility group protein 20A isoform X1
translation: MLCRDMENLVSGSTLPPLFADEEGPKEGSEITVTGLAHSDNSFTGGTSQPVNNPDLVEDLSQAQQLQNEASNTAENTEQKPEEEQQRTKRGGWAKGRKRKKPLRDTNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKRRYLDEADRDKERYMRELEQYQKTEAYKVFSRKAQDRQKGKSHRQDGARQTAHDHEKEADTKERSVFDIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQALTTSFAGVPLPGSGETPTMETIDSYMNRLHSIIMANPEENENLIATVRDVVNRLER
SIO_010081: HMG20A
subclass of: SO_0000673
so part of: HMG20A
location: join(746260..746267,753968..754063,756108..756255,757613..757828,759904..760036,760374..760405,763784..763859,764741..764956,765581..765717)
location: region:746260-765717:1
so has part: feature:746260-746267:1:exon
so has part: feature:753968-754063:1:exon
so has part: feature:756108-756255:1:exon
so has part: feature:757613-757828:1:exon
so has part: feature:759904-760036:1:exon
so has part: feature:760374-760405:1:exon
so has part: feature:763784-763859:1:exon
so has part: feature:764741-764956:1:exon
so has part: feature:765581-765717:1:exon

XP_030312862.1
type: Protein
SIO_000068: ncbiprotein

position:746260:1
position: 746260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:765717:1
position: 765717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:746260-746267:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:753968-754063:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:756108-756255:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:757613-757828:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:759904-760036:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:760374-760405:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:763784-763859:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:764741-764956:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:765581-765717:1:exon

HMG20A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: HMG20A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: high mobility group protein 20A isoform X2
translation: MLCRDMENLVSGSTLPPLFADEEGPKEGSEITVTGLAHSDNSFTGGTSQPVNNPDLVEDLSQAQQLQNEASNTAENTEQKPEEEQRTKRGGWAKGRKRKKPLRDTNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKRRYLDEADRDKERYMRELEQYQKTEAYKVFSRKAQDRQKGKSHRQDGARQTAHDHEKEADTKERSVFDIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQALTTSFAGVPLPGSGETPTMETIDSYMNRLHSIIMANPEENENLIATVRDVVNRLER
SIO_010081: HMG20A
subclass of: SO_0000673
so part of: HMG20A
location: join(746260..746267,753968..754063,756108..756255,757616..757828,759904..760036,760374..760405,763784..763859,764741..764956,765581..765717)
location: region:746260-765717:1
so has part: feature:746260-746267:1:exon
so has part: feature:753968-754063:1:exon
so has part: feature:756108-756255:1:exon
so has part: feature:757616-757828:1:exon
so has part: feature:759904-760036:1:exon
so has part: feature:760374-760405:1:exon
so has part: feature:763784-763859:1:exon
so has part: feature:764741-764956:1:exon
so has part: feature:765581-765717:1:exon

XP_030312863.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:746260-746267:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:753968-754063:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:756108-756255:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:757616-757828:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:759904-760036:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:760374-760405:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:763784-763859:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:764741-764956:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:765581-765717:1:exon

HMG20A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: HMG20A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: high mobility group protein 20A isoform X3
translation: MENLVSGSTLPPLFADEEGPKEGSEITVTGLAHSDNSFTGGTSQPVNNPDLVEDLSQAQQLQNEASNTAENTEQKPEEEQQRTKRGGWAKGRKRKKPLRDTNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKRRYLDEADRDKERYMRELEQYQKTEAYKVFSRKAQDRQKGKSHRQDGARQTAHDHEKEADTKERSVFDIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQALTTSFAGVPLPGSGETPTMETIDSYMNRLHSIIMANPEENENLIATVRDVVNRLER
SIO_010081: HMG20A
subclass of: SO_0000673
so part of: HMG20A
location: join(753975..754063,756108..756255,757613..757828,759904..760036,760374..760405,763784..763859,764741..764956,765581..765717)
location: region:753975-765717:1
so has part: feature:753975-754063:1:exon
so has part: feature:756108-756255:1:exon
so has part: feature:757613-757828:1:exon
so has part: feature:759904-760036:1:exon
so has part: feature:760374-760405:1:exon
so has part: feature:763784-763859:1:exon
so has part: feature:764741-764956:1:exon
so has part: feature:765581-765717:1:exon

XP_030312864.1
type: Protein
SIO_000068: ncbiprotein

position:753975:1
position: 753975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:753975-754063:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:756108-756255:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:757613-757828:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:759904-760036:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:760374-760405:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:763784-763859:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:764741-764956:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:765581-765717:1:exon

HMG20A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: HMG20A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: high mobility group protein 20A isoform X3
translation: MENLVSGSTLPPLFADEEGPKEGSEITVTGLAHSDNSFTGGTSQPVNNPDLVEDLSQAQQLQNEASNTAENTEQKPEEEQQRTKRGGWAKGRKRKKPLRDTNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKRRYLDEADRDKERYMRELEQYQKTEAYKVFSRKAQDRQKGKSHRQDGARQTAHDHEKEADTKERSVFDIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQALTTSFAGVPLPGSGETPTMETIDSYMNRLHSIIMANPEENENLIATVRDVVNRLER
SIO_010081: HMG20A
subclass of: SO_0000673
so part of: HMG20A
location: join(753975..754063,756108..756255,757613..757828,759904..760036,760374..760405,763784..763859,764741..764956,765581..765717)
location: region:753975-765717:1
so has part: feature:753975-754063:1:exon
so has part: feature:756108-756255:1:exon
so has part: feature:757613-757828:1:exon
so has part: feature:759904-760036:1:exon
so has part: feature:760374-760405:1:exon
so has part: feature:763784-763859:1:exon
so has part: feature:764741-764956:1:exon
so has part: feature:765581-765717:1:exon

XP_030312865.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:753975-754063:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:756108-756255:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:757613-757828:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:759904-760036:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:760374-760405:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:763784-763859:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:764741-764956:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:765581-765717:1:exon

HMG20A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: HMG20A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: high mobility group protein 20A isoform X3
translation: MENLVSGSTLPPLFADEEGPKEGSEITVTGLAHSDNSFTGGTSQPVNNPDLVEDLSQAQQLQNEASNTAENTEQKPEEEQQRTKRGGWAKGRKRKKPLRDTNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKRRYLDEADRDKERYMRELEQYQKTEAYKVFSRKAQDRQKGKSHRQDGARQTAHDHEKEADTKERSVFDIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQALTTSFAGVPLPGSGETPTMETIDSYMNRLHSIIMANPEENENLIATVRDVVNRLER
SIO_010081: HMG20A
subclass of: SO_0000673
so part of: HMG20A
location: join(753975..754063,756108..756255,757613..757828,759904..760036,760374..760405,763784..763859,764741..764956,765581..765717)
location: region:753975-765717:1
so has part: feature:753975-754063:1:exon
so has part: feature:756108-756255:1:exon
so has part: feature:757613-757828:1:exon
so has part: feature:759904-760036:1:exon
so has part: feature:760374-760405:1:exon
so has part: feature:763784-763859:1:exon
so has part: feature:764741-764956:1:exon
so has part: feature:765581-765717:1:exon

XP_030312866.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:753975-754063:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:756108-756255:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:757613-757828:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:759904-760036:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:760374-760405:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:763784-763859:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:764741-764956:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:765581-765717:1:exon

HMG20A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: HMG20A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: high mobility group protein 20A isoform X3
translation: MENLVSGSTLPPLFADEEGPKEGSEITVTGLAHSDNSFTGGTSQPVNNPDLVEDLSQAQQLQNEASNTAENTEQKPEEEQQRTKRGGWAKGRKRKKPLRDTNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKRRYLDEADRDKERYMRELEQYQKTEAYKVFSRKAQDRQKGKSHRQDGARQTAHDHEKEADTKERSVFDIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQALTTSFAGVPLPGSGETPTMETIDSYMNRLHSIIMANPEENENLIATVRDVVNRLER
SIO_010081: HMG20A
subclass of: SO_0000673
so part of: HMG20A
location: join(753975..754063,756108..756255,757613..757828,759904..760036,760374..760405,763784..763859,764741..764956,765581..765717)
location: region:753975-765717:1
so has part: feature:753975-754063:1:exon
so has part: feature:756108-756255:1:exon
so has part: feature:757613-757828:1:exon
so has part: feature:759904-760036:1:exon
so has part: feature:760374-760405:1:exon
so has part: feature:763784-763859:1:exon
so has part: feature:764741-764956:1:exon
so has part: feature:765581-765717:1:exon

XP_030312867.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:753975-754063:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:756108-756255:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:757613-757828:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:759904-760036:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:760374-760405:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:763784-763859:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:764741-764956:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:765581-765717:1:exon

HMG20A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: HMG20A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: high mobility group protein 20A isoform X3
translation: MENLVSGSTLPPLFADEEGPKEGSEITVTGLAHSDNSFTGGTSQPVNNPDLVEDLSQAQQLQNEASNTAENTEQKPEEEQQRTKRGGWAKGRKRKKPLRDTNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKRRYLDEADRDKERYMRELEQYQKTEAYKVFSRKAQDRQKGKSHRQDGARQTAHDHEKEADTKERSVFDIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQALTTSFAGVPLPGSGETPTMETIDSYMNRLHSIIMANPEENENLIATVRDVVNRLER
SIO_010081: HMG20A
subclass of: SO_0000673
so part of: HMG20A
location: join(753975..754063,756108..756255,757613..757828,759904..760036,760374..760405,763784..763859,764741..764956,765581..765717)
location: region:753975-765717:1
so has part: feature:753975-754063:1:exon
so has part: feature:756108-756255:1:exon
so has part: feature:757613-757828:1:exon
so has part: feature:759904-760036:1:exon
so has part: feature:760374-760405:1:exon
so has part: feature:763784-763859:1:exon
so has part: feature:764741-764956:1:exon
so has part: feature:765581-765717:1:exon

XP_030312868.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:753975-754063:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:756108-756255:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:757613-757828:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:759904-760036:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:760374-760405:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:763784-763859:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:764741-764956:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:765581-765717:1:exon

HMG20A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: HMG20A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: high mobility group protein 20A isoform X3
translation: MENLVSGSTLPPLFADEEGPKEGSEITVTGLAHSDNSFTGGTSQPVNNPDLVEDLSQAQQLQNEASNTAENTEQKPEEEQQRTKRGGWAKGRKRKKPLRDTNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKRRYLDEADRDKERYMRELEQYQKTEAYKVFSRKAQDRQKGKSHRQDGARQTAHDHEKEADTKERSVFDIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQALTTSFAGVPLPGSGETPTMETIDSYMNRLHSIIMANPEENENLIATVRDVVNRLER
SIO_010081: HMG20A
subclass of: SO_0000673
so part of: HMG20A
location: join(753975..754063,756108..756255,757613..757828,759904..760036,760374..760405,763784..763859,764741..764956,765581..765717)
location: region:753975-765717:1
so has part: feature:753975-754063:1:exon
so has part: feature:756108-756255:1:exon
so has part: feature:757613-757828:1:exon
so has part: feature:759904-760036:1:exon
so has part: feature:760374-760405:1:exon
so has part: feature:763784-763859:1:exon
so has part: feature:764741-764956:1:exon
so has part: feature:765581-765717:1:exon

XP_030312869.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:753975-754063:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:756108-756255:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:757613-757828:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:759904-760036:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:760374-760405:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:763784-763859:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:764741-764956:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:765581-765717:1:exon

LINGO1
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: LINGO1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(908893..979707)
location: region:908893-979707:-1
so has part: feature:908893-979707:-1:exon
subclass of: SO_0000010

103528730
type: Gene
SIO_000068: ncbigene

position:908893:-1
position: 908893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:979707:-1
position: 979707
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:908893-979707:-1:exon

LINGO1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: LINGO1
product: leucine rich repeat and Ig domain containing 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 30 ESTs, 2 long SRA reads, 12 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030456971.1
SIO_010081: LINGO1
subclass of: SO_0000673
so part of: LINGO1
location: complement(join(908893..911147,979537..979707))
location: region:908893-979707:-1
so has part: feature:979537-979707:-1:exon
so has part: feature:908893-911147:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:979537-979707:-1:exon

position:979537:-1
position: 979537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:908893-911147:-1:exon

position:911147:-1
position: 911147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LINGO1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: LINGO1
product: leucine rich repeat and Ig domain containing 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 32 ESTs, 1 long SRA read, 17 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_030456970.1
SIO_010081: LINGO1
subclass of: SO_0000673
so part of: LINGO1
location: complement(join(908893..911147,926826..926882))
location: region:908893-926882:-1
so has part: feature:926826-926882:-1:exon
so has part: feature:908893-911147:-1:exon

position:926882:-1
position: 926882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:926826-926882:-1:exon

position:926826:-1
position: 926826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:908893-911147:-1:exon

LINGO1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: LINGO1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X1
translation: MQVRDRMVAGEASMRSPILACWQPILLLMLGSILSGSATGCPPRCECSAQERAVLCHRKRFMVVPEGVPTETKLLDLGKNRIKTLNQDEFANYPHLEELELNENIISAIEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINTIRDYSFKRLYRLKVLEISHWPYLDTMTSNCLYGLNLTSLSITHCNLTSIPYVSVRHLVYLRFLNLSYNPIVTIEGSMLHDLLRLQEIQLVGGQLTTVEPFAFRGLNYLRILNVSGNLLTTLEESAFHSVGNLETLILDNNPLACDCRLLWVFRRRWRLNFNKQQPTCSTPEFVQGKEFKDFPDILLPNYFTCRRARIRDRKPQQIFVDEGHTVHFVCRADGDPPPTIMWLSPRKHLISTKTNGRLTVFPDGTLEVRYAQIQDNGTYLCIASNAGGNDTMLAHLHVRSYSPDWPHQPNKTFAFISNQPNESDANSTRATVPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNTKHNIEIEYVPRKSDAGISSADAPRKFNMKMI
SIO_010081: LINGO1
subclass of: SO_0000673
so part of: LINGO1
location: complement(join(909294..911147,926826..926831))
location: region:909294-926831:-1
so has part: feature:926826-926831:-1:exon
so has part: feature:909294-911147:-1:exon

XP_030312830.1
type: Protein
SIO_000068: ncbiprotein

position:909294:-1
position: 909294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:926831:-1
position: 926831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:926826-926831:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:909294-911147:-1:exon

LINGO1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: LINGO1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2
translation: MVAGEASMRSPILACWQPILLLMLGSILSGSATGCPPRCECSAQERAVLCHRKRFMVVPEGVPTETKLLDLGKNRIKTLNQDEFANYPHLEELELNENIISAIEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINTIRDYSFKRLYRLKVLEISHWPYLDTMTSNCLYGLNLTSLSITHCNLTSIPYVSVRHLVYLRFLNLSYNPIVTIEGSMLHDLLRLQEIQLVGGQLTTVEPFAFRGLNYLRILNVSGNLLTTLEESAFHSVGNLETLILDNNPLACDCRLLWVFRRRWRLNFNKQQPTCSTPEFVQGKEFKDFPDILLPNYFTCRRARIRDRKPQQIFVDEGHTVHFVCRADGDPPPTIMWLSPRKHLISTKTNGRLTVFPDGTLEVRYAQIQDNGTYLCIASNAGGNDTMLAHLHVRSYSPDWPHQPNKTFAFISNQPNESDANSTRATVPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNTKHNIEIEYVPRKSDAGISSADAPRKFNMKMI
SIO_010081: LINGO1
subclass of: SO_0000673
so part of: LINGO1
location: complement(909294..911135)
location: region:909294-911135:-1
so has part: feature:909294-911135:-1:exon

XP_030312831.1
type: Protein
SIO_000068: ncbiprotein

position:911135:-1
position: 911135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:909294-911135:-1:exon

CSPG4
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: CSPG4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1069696..1133032
location: region:1069696-1133032:1
so has part: feature:1069696-1133032:1:exon
subclass of: SO_0000010

103528739
type: Gene
SIO_000068: ncbigene

position:1069696:1
position: 1069696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1133032:1
position: 1133032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1069696-1133032:1:exon

CSPG4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: CSPG4
product: chondroitin sulfate proteoglycan 4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 11 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030457267.1
SIO_010081: CSPG4
subclass of: SO_0000673
so part of: CSPG4
location: join(1069696..1069929,1074405..1074541,1106765..1107000,1119575..1119738,1120828..1124409,1124712..1125191,1125608..1125784,1128846..1129044,1129229..1129363,1129524..1129678,1130308..1130491,1130722..1133032)
location: region:1069696-1133032:1
so has part: feature:1069696-1069929:1:exon
so has part: feature:1074405-1074541:1:exon
so has part: feature:1106765-1107000:1:exon
so has part: feature:1119575-1119738:1:exon
so has part: feature:1120828-1124409:1:exon
so has part: feature:1124712-1125191:1:exon
so has part: feature:1125608-1125784:1:exon
so has part: feature:1128846-1129044:1:exon
so has part: feature:1129229-1129363:1:exon
so has part: feature:1129524-1129678:1:exon
so has part: feature:1130308-1130491:1:exon
so has part: feature:1130722-1133032:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1069696-1069929:1:exon

position:1069929:1
position: 1069929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1074405-1074541:1:exon

position:1074405:1
position: 1074405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1074541:1
position: 1074541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1106765-1107000:1:exon

position:1106765:1
position: 1106765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1107000:1
position: 1107000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1119575-1119738:1:exon

position:1119575:1
position: 1119575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1119738:1
position: 1119738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1120828-1124409:1:exon

position:1120828:1
position: 1120828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1124409:1
position: 1124409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1124712-1125191:1:exon

position:1124712:1
position: 1124712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1125191:1
position: 1125191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1125608-1125784:1:exon

position:1125608:1
position: 1125608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1125784:1
position: 1125784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1128846-1129044:1:exon

position:1128846:1
position: 1128846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1129044:1
position: 1129044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1129229-1129363:1:exon

position:1129229:1
position: 1129229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1129363:1
position: 1129363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1129524-1129678:1:exon

position:1129524:1
position: 1129524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1129678:1
position: 1129678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1130308-1130491:1:exon

position:1130308:1
position: 1130308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1130491:1
position: 1130491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1130722-1133032:1:exon

position:1130722:1
position: 1130722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CSPG4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: CSPG4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: chondroitin sulfate proteoglycan 4
translation: MPKKPPLPGQKRPQPLLCKTNLHQVLCMCSAHACTPGTAQETLILAEGRTEPGQSPLSEQHSPSLQAPLFESTFTHSSVLLLHMENGFCLTAISAETQSAVAARQPPRAGRRHLSVPPDMCGDGREKLGVPPSLLFIKYSSSSSPSPGAGAGGAFAALGAPAPATAPGDTMGDRGGTAIPLLLLLLLVAYQTLPLAAGPPAGASFFGDGFVELPLADASRTVRLRLRLLTSQASGMLFLAAGQPDHLLLQMQAGGLQAMLQLGQEEVTLQSPAELQLNNLVVHDVELLVEDGRMTMTIDSLFNSSVDITGPVQELDIQYGLYAGGTGSLDLPYLAKASSPFRGCLLLVTFNGLDVLSPLSSDGNSRVFHQVQEGCSTQFSADPEDPFGFLGPHSYVAFPMWDAREEATIEFVITTSITQAPLIYHAGLENDFFYLEISNGRLRGFVEKGNGIIVLHNNVFISDEQQHYVKVYTDIHKFEILIDYYASSTSNRGINNYLDLQGNLFIGGMNGRALQRLREHHLAFISAWTMTNSSFVGCLEDLRINLQRRSLQDAVVTRDITAGCGKQDHYWDYEEAYEQDEAPTTPPPDAWSGAPGLMVEPCHPDSSFPPAFANISRLLHVSPLIVSEGGTAYLEWKHAQPTVDLGLANLRQSQILFSITNDPRHGQLELDIPGSRSRRKFTLLDIVNRKVRYVHDGSEGPMDQLMLEVTVTAQQGVPECLRQGQMYLLPIMINPINDAPQVIFPHGNHMTILKHTQKHLTTDILQVLDDDTSCDDLEFQLPGVQQMEEGYVEYSFQPGVPIEEFSCRDLEAGNIVYVHQSGTNLQLPLQVSDGTVPSPIATLRILAIDPDIRLHNNTGLSVSQGGAARITTANLSVETNAVDQRVTILYILTEPLRYGEVQKQGSMGGEWKKVESFHQQDLEQGRIQYFSTDPEHRLEDVMEKMNFNIQVGQKVLQNNTFLIGIKRATIKMRTMVPLQMKNKRHRNITSKELEAMLEDPNSTPVPFHYMIIQAPKKGNLELLGNRLTEGFGFTQDDIQRNHLSYSVTIRNSQQAEDSFQFRIHTGEQHSPVYTYTISIGGDPDAPTLTNVLLTVPEGGQAVISKDHLFVQSMNSMDYLYEVIEGPAHGRLAWAASHGWTSREEIMEFTNDDILHRRLLYQHDDSETLEDDIPFVATRQGEGSAEPEAEEVRGVFRVSIQPVNDHVPVQVVNKVFNVVRNGQHLLTTDDIAFTDKDSGFSDTQLVLARKDILFGSIVSVDDRSHQIYRFTQDDLRKKKILFVHSGADRGWIQLQVSDGLHQTTALLEVQASDPYIKIVNNTGLVIHQGSRGSIDSSVLSLETNMDIRSDEEIRFLITTTPRWGTVLRGEQPVLAFSQRDLRAGEISYHHNGSRNTRDELQFTVEANQVSVEDTLAISVFLDTHPSPLHIVNHKEMQVFQGEAAGIKEEYLLVVHEEIPPQDIVYQVSSPPASGFLAMLQHDEDSNEQPSLDPIQSFTQEDINNGRVLYLHSRPEDEHDQFVVDITARGADSLEGVVVSLAVLPITIPLDVHNITVPGGGSASLSTSILNIPNTYYMALGMEFRVLEPPRFGTLLNSERPEDGGLHSFTWTEVENQQIQYRQDGPQAQADSFTLLANATQVARQSQPRTVLVTILPRSSRGPRLRVNAGLQLREGTAAAIGPHVLSAEDEDSPAEEVTYSIHPPANGKVVLRSAPSTEVRQFTQAQINNGLVLFVHQGPLDGGFAFDLKDGENMSPGHFFYIRAQREPLISLAKKQSLTVCPGALQPITSQNLQAVSNSPTSSSTLYYSIEQAPRLGRLRTSQGEEVRNFTQAQVDSGLIFYQHEMPEKPFWLAQDAIRFRVVAPTTISDSFLLLVLISFETRCPQRSTQLWRNAGLQIAGAQRAEIRTSVLDASNLLSQIPVTERPSHDVVFLVTGLPAHGQLLVAGVPLEQSRPFFLQSDLAAGRLAYAHGGDSTSEDHFRFKAWLRPQTQQSLRPPQE…
SIO_010081: CSPG4
subclass of: SO_0000673
so part of: CSPG4
location: join(1069696..1069929,1074405..1074541,1106765..1107000,1119575..1119738,1120828..1124409,1124712..1125191,1125608..1125784,1128846..1129044,1129229..1129363,1129524..1129678,1130308..1130491,1130722..1132625)
location: region:1069696-1132625:1
so has part: feature:1069696-1069929:1:exon
so has part: feature:1074405-1074541:1:exon
so has part: feature:1106765-1107000:1:exon
so has part: feature:1119575-1119738:1:exon
so has part: feature:1120828-1124409:1:exon
so has part: feature:1124712-1125191:1:exon
so has part: feature:1125608-1125784:1:exon
so has part: feature:1128846-1129044:1:exon
so has part: feature:1129229-1129363:1:exon
so has part: feature:1129524-1129678:1:exon
so has part: feature:1130308-1130491:1:exon
so has part: feature:1130722-1132625:1:exon

XP_030313127.1
type: Protein
SIO_000068: ncbiprotein

position:1132625:1
position: 1132625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1069696-1069929:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1074405-1074541:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1106765-1107000:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1119575-1119738:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1120828-1124409:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1124712-1125191:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1125608-1125784:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1128846-1129044:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1129229-1129363:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1129524-1129678:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1130308-1130491:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1130722-1132625:1:exon

SNX33
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: SNX33
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1139412..1144554)
location: region:1139412-1144554:-1
so has part: feature:1139412-1144554:-1:exon
subclass of: SO_0000010

103528729
type: Gene
SIO_000068: ncbigene

position:1139412:-1
position: 1139412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1144554:-1
position: 1144554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1139412-1144554:-1:exon

SNX33
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: SNX33
product: sorting nexin 33
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 ESTs, 1 long SRA read, 18 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_008494106.2
SIO_010081: SNX33
subclass of: SO_0000673
so part of: SNX33
location: complement(join(1139412..1140325,1142125..1144554))
location: region:1139412-1144554:-1
so has part: feature:1142125-1144554:-1:exon
so has part: feature:1139412-1140325:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1142125-1144554:-1:exon

position:1142125:-1
position: 1142125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1139412-1140325:-1:exon

position:1140325:-1
position: 1140325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SNX33
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: SNX33
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sorting nexin-33
translation: MALKARALYNFQSENKEEISIQENEELVIFSENSLDGWLQGQNSRGETGLFPASYVEILRSRSGSNYTDYSGSPAGSPGHDSSFYTAPPNPGISYQGSFEDDDDDDWDDWDDACTVVEEPRSATGTNGHPSPNLQCLPAYGHHQHAGYRPKPALERQDSMSSSKRGSVVGRNLNRFSCFVRSGVEAFILGDVPLMSKIAEAYCIEMGSKGPQWRANPHPFICSVEDPTKQTKFKGIKSYISYKLTPSNINSPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQATGRFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLCCRDEKQWKLGKRRAEKDEMVGASFLLTIQIPTEHQDLQDVEDRVDAFKAFSKKMDDSVLQLTNVASELVRKHVGGFRKEFQKLGNAFQAISHSFHMDPPYSSDALNNAISHTGKTYETVGEMFAEQPKNDLFLMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQRMSDEGRMDQEEADGIRKRCRVVGFALQAEMNHFHERRVADFKRMMQSYLKQQIVFYQRVSQQLEKTLRMYDNL
SIO_010081: SNX33
subclass of: SO_0000673
so part of: SNX33
location: complement(join(1140072..1140325,1142125..1143565))
location: region:1140072-1143565:-1
so has part: feature:1142125-1143565:-1:exon
so has part: feature:1140072-1140325:-1:exon

XP_008492328.2
type: Protein
SIO_000068: ncbiprotein

position:1140072:-1
position: 1140072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1143565:-1
position: 1143565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1142125-1143565:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1140072-1140325:-1:exon

SNUPN
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: SNUPN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1145163..1154792
location: region:1145163-1154792:1
so has part: feature:1145163-1154792:1:exon
subclass of: SO_0000010

103528738
type: Gene
SIO_000068: ncbigene

position:1145163:1
position: 1145163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1154792:1
position: 1154792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1145163-1154792:1:exon

SNUPN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: SNUPN
product: snurportin 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 4 ESTs, 1 long SRA read, 5 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_030457001.1
SIO_010081: SNUPN
subclass of: SO_0000673
so part of: SNUPN
location: join(1145163..1145339,1145567..1145720,1146399..1146503,1146609..1146705,1147617..1147714,1148007..1148084,1149802..1149882,1153749..1154792)
location: region:1145163-1154792:1
so has part: feature:1145163-1145339:1:exon
so has part: feature:1145567-1145720:1:exon
so has part: feature:1146399-1146503:1:exon
so has part: feature:1146609-1146705:1:exon
so has part: feature:1147617-1147714:1:exon
so has part: feature:1148007-1148084:1:exon
so has part: feature:1149802-1149882:1:exon
so has part: feature:1153749-1154792:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1145163-1145339:1:exon

position:1145339:1
position: 1145339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1145567-1145720:1:exon

position:1145567:1
position: 1145567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1145720:1
position: 1145720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1146399-1146503:1:exon

position:1146399:1
position: 1146399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1146503:1
position: 1146503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1146609-1146705:1:exon

position:1146609:1
position: 1146609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1146705:1
position: 1146705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1147617-1147714:1:exon

position:1147617:1
position: 1147617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1147714:1
position: 1147714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1148007-1148084:1:exon

position:1148007:1
position: 1148007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1148084:1
position: 1148084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1149802-1149882:1:exon

position:1149802:1
position: 1149802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1149882:1
position: 1149882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1153749-1154792:1:exon

position:1153749:1
position: 1153749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SNUPN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: SNUPN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: snurportin-1
translation: MEELSAALAAAVGPAAPNSPAAPHPRLAAYKPRGGLGQAERRQRLLRIQRERRLDYVNHARRLAEDDWTGVESEGEEKREDAEEEEMEVDAGKKLPKRYANQLMLSEWLVDVPSDLEQEWVLVVCPIGKRALVVASRGTTAAYTKSGFCVNRFPSLLPGGNRHNSTSDKVYSILDCIYNEVKQTYYILDVMCWRGHPVYDCQTDFRFFWLSSKIQEEEGLGEKSRINPYKFVGLQNFPCSSDSLCKVLATDFPFEVDGLLFYHKQTHYTPGSTPLVGWLRPYMVPEILGLSVPTTPLTAKPDYAGRQLQQIIESKRSKKLSAEKGHPAARNGHYELEHLSTPQSANSPEGQEGAGSQMEG
SIO_010081: SNUPN
subclass of: SO_0000673
so part of: SNUPN
location: join(1145188..1145339,1145567..1145720,1146399..1146503,1146609..1146705,1147617..1147714,1148007..1148084,1149802..1149882,1153749..1154066)
location: region:1145188-1154066:1
so has part: feature:1145188-1145339:1:exon
so has part: feature:1145567-1145720:1:exon
so has part: feature:1146399-1146503:1:exon
so has part: feature:1146609-1146705:1:exon
so has part: feature:1147617-1147714:1:exon
so has part: feature:1148007-1148084:1:exon
so has part: feature:1149802-1149882:1:exon
so has part: feature:1153749-1154066:1:exon

XP_030312861.1
type: Protein
SIO_000068: ncbiprotein

position:1145188:1
position: 1145188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1154066:1
position: 1154066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1145188-1145339:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1145567-1145720:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1146399-1146503:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1146609-1146705:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1147617-1147714:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1148007-1148084:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1149802-1149882:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1153749-1154066:1:exon

LOC115598836
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: LOC115598836
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1153260..1155230)
location: region:1153260-1155230:-1
so has part: feature:1153260-1155230:-1:exon
subclass of: SO_0000011

115598836
type: Gene
SIO_000068: ncbigene

position:1153260:-1
position: 1153260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1155230:-1
position: 1155230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1153260-1155230:-1:exon

LOC115598836
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9244
nc RNA class: lncRNA
gene: LOC115598836
product: uncharacterized LOC115598836
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_003987964.1
SIO_010081: LOC115598836
subclass of: SO_0000673
so part of: LOC115598836
location: complement(join(1153260..1153697,1155039..1155230))
location: region:1153260-1155230:-1
so has part: feature:1155039-1155230:-1:exon
so has part: feature:1153260-1153697:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1155039-1155230:-1:exon

position:1155039:-1
position: 1155039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1153260-1153697:-1:exon

position:1153697:-1
position: 1153697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115598832
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: LOC115598832
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1155490..1156882)
location: region:1155490-1156882:-1
so has part: feature:1155490-1156882:-1:exon
subclass of: SO_0000011

115598832
type: Gene
SIO_000068: ncbigene

position:1155490:-1
position: 1155490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1156882:-1
position: 1156882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1155490-1156882:-1:exon

LOC115598832
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9244
nc RNA class: lncRNA
gene: LOC115598832
product: uncharacterized LOC115598832
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_003987960.1
SIO_010081: LOC115598832
subclass of: SO_0000673
so part of: LOC115598832
location: complement(join(1155490..1155930,1156588..1156882))
location: region:1155490-1156882:-1
so has part: feature:1156588-1156882:-1:exon
so has part: feature:1155490-1155930:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1156588-1156882:-1:exon

position:1156588:-1
position: 1156588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1155490-1155930:-1:exon

position:1155930:-1
position: 1155930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PTPN9
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: PTPN9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1157333..1168770
location: region:1157333-1168770:1
so has part: feature:1157333-1168770:1:exon
subclass of: SO_0000010

103528737
type: Gene
SIO_000068: ncbigene

position:1157333:1
position: 1157333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1168770:1
position: 1168770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1157333-1168770:1:exon

PTPN9
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: PTPN9
product: protein tyrosine phosphatase non-receptor type 9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 2 long SRA reads, 14 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_008494114.2
SIO_010081: PTPN9
subclass of: SO_0000673
so part of: PTPN9
location: join(1157333..1157469,1161541..1161684,1162198..1162287,1162398..1162522,1163270..1163375,1164000..1164110,1164780..1165108,1165488..1165581,1165681..1165750,1166089..1166167,1166373..1166523,1166634..1166841,1167137..1168770)
location: region:1157333-1168770:1
so has part: feature:1157333-1157469:1:exon
so has part: feature:1161541-1161684:1:exon
so has part: feature:1162198-1162287:1:exon
so has part: feature:1162398-1162522:1:exon
so has part: feature:1163270-1163375:1:exon
so has part: feature:1164000-1164110:1:exon
so has part: feature:1164780-1165108:1:exon
so has part: feature:1165488-1165581:1:exon
so has part: feature:1165681-1165750:1:exon
so has part: feature:1166089-1166167:1:exon
so has part: feature:1166373-1166523:1:exon
so has part: feature:1166634-1166841:1:exon
so has part: feature:1167137-1168770:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1157333-1157469:1:exon

position:1157469:1
position: 1157469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1161541-1161684:1:exon

position:1161541:1
position: 1161541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1161684:1
position: 1161684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1162198-1162287:1:exon

position:1162198:1
position: 1162198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1162287:1
position: 1162287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1162398-1162522:1:exon

position:1162398:1
position: 1162398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1162522:1
position: 1162522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1163270-1163375:1:exon

position:1163270:1
position: 1163270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1163375:1
position: 1163375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1164000-1164110:1:exon

position:1164000:1
position: 1164000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1164110:1
position: 1164110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1164780-1165108:1:exon

position:1164780:1
position: 1164780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1165108:1
position: 1165108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1165488-1165581:1:exon

position:1165488:1
position: 1165488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1165581:1
position: 1165581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1165681-1165750:1:exon

position:1165681:1
position: 1165681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1165750:1
position: 1165750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1166089-1166167:1:exon

position:1166089:1
position: 1166089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1166167:1
position: 1166167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1166373-1166523:1:exon

position:1166373:1
position: 1166373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1166523:1
position: 1166523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1166634-1166841:1:exon

position:1166634:1
position: 1166634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1166841:1
position: 1166841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1167137-1168770:1:exon

position:1167137:1
position: 1167137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PTPN9
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: PTPN9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tyrosine-protein phosphatase non-receptor type 9
translation: MAAELSAEEEQATKQFLEEINKWTGQYNVSPLSWNVAVKFLMARKFDVLRAIELFHSYRETRLKEGIVKLKPHEEPLRSELLSGKFTILSVRDPSGASIALFTAKLHHPSKSVQHVVLQALFYLLDQAVESFETQRNGLVFIYDMAGSQYTNFELDLSKKILNLLKGAFPARLKKVFIVGAPMWFRVPYSIISLLLKEKLRERVQMVKMSELKEHLPQECLPEYLGGSLKLDPLSWNCRFLPQQNGHPDPLDELILVPLVAPKDNGSVHVPGPKSITLQELLDHVSHKQKRGIYEEYEDIRRRSPAGTFVCSLAPYNQEKNRYGDVPCLDQTRVKLAKPYSRPELTDYINASFMDGYKQRNAYIGTQGPLENTYGDFWRMVWEQNVLVIVMTTRLEEGGRRKCGQYWPLEKDFQVCFGALTITNLGVENLNHYKKTILEIHSSETRERRLVSHFQYLSWPDYGVPSSAATLIDFLGAVKQQQRVAVSALGPRFKGHPGGPPVVVHCSAGIGRTGTFCALDICLSQLQDVGTLNIYQTVLRMRTQRAFSIQTPEQYYFCYTAVLEHAQREGLLLANHSRATQEKSSLGH
SIO_010081: PTPN9
subclass of: SO_0000673
so part of: PTPN9
location: join(1157437..1157469,1161541..1161684,1162198..1162287,1162398..1162522,1163270..1163375,1164000..1164110,1164780..1165108,1165488..1165581,1165681..1165750,1166089..1166167,1166373..1166523,1166634..1166841,1167137..1167363)
location: region:1157437-1167363:1
so has part: feature:1157437-1157469:1:exon
so has part: feature:1161541-1161684:1:exon
so has part: feature:1162198-1162287:1:exon
so has part: feature:1162398-1162522:1:exon
so has part: feature:1163270-1163375:1:exon
so has part: feature:1164000-1164110:1:exon
so has part: feature:1164780-1165108:1:exon
so has part: feature:1165488-1165581:1:exon
so has part: feature:1165681-1165750:1:exon
so has part: feature:1166089-1166167:1:exon
so has part: feature:1166373-1166523:1:exon
so has part: feature:1166634-1166841:1:exon
so has part: feature:1167137-1167363:1:exon

XP_008492336.1
type: Protein
SIO_000068: ncbiprotein

position:1157437:1
position: 1157437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1167363:1
position: 1167363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1157437-1157469:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1161541-1161684:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1162198-1162287:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1162398-1162522:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1163270-1163375:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1164000-1164110:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1164780-1165108:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1165488-1165581:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1165681-1165750:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1166089-1166167:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1166373-1166523:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1166634-1166841:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1167137-1167363:1:exon

SIN3A
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: SIN3A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1171397..1201689
location: region:1171397-1201689:1
so has part: feature:1171397-1201689:1:exon
subclass of: SO_0000010

103528736
type: Gene
SIO_000068: ncbigene

position:1171397:1
position: 1171397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1201689:1
position: 1201689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1171397-1201689:1:exon

SIN3A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: SIN3A
product: SIN3 transcription regulator family member A
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 11 ESTs, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030456966.1
SIO_010081: SIN3A
subclass of: SO_0000673
so part of: SIN3A
location: join(1171397..1171478,1178073..1178294,1179968..1180144,1181574..1181680,1182592..1182874,1184929..1185180,1185395..1185547,1185890..1186048,1187210..1187299,1188735..1188853,1190797..1191007,1193084..1193200,1193925..1194163,1194940..1195123,1195327..1195900,1196387..1196556,1197629..1197802,1198606..1198698,1199032..1199126,1199615..1199822,1200429..1201689)
location: region:1171397-1201689:1
so has part: feature:1171397-1171478:1:exon
so has part: feature:1178073-1178294:1:exon
so has part: feature:1179968-1180144:1:exon
so has part: feature:1181574-1181680:1:exon
so has part: feature:1182592-1182874:1:exon
so has part: feature:1184929-1185180:1:exon
so has part: feature:1185395-1185547:1:exon
so has part: feature:1185890-1186048:1:exon
so has part: feature:1187210-1187299:1:exon
so has part: feature:1188735-1188853:1:exon
so has part: feature:1190797-1191007:1:exon
so has part: feature:1193084-1193200:1:exon
so has part: feature:1193925-1194163:1:exon
so has part: feature:1194940-1195123:1:exon
so has part: feature:1195327-1195900:1:exon
so has part: feature:1196387-1196556:1:exon
so has part: feature:1197629-1197802:1:exon
so has part: feature:1198606-1198698:1:exon
so has part: feature:1199032-1199126:1:exon
so has part: feature:1199615-1199822:1:exon
so has part: feature:1200429-1201689:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1171397-1171478:1:exon

position:1171478:1
position: 1171478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1178073-1178294:1:exon

position:1178073:1
position: 1178073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1178294:1
position: 1178294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1179968-1180144:1:exon

position:1179968:1
position: 1179968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1180144:1
position: 1180144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1181574-1181680:1:exon

position:1181574:1
position: 1181574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1181680:1
position: 1181680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1182592-1182874:1:exon

position:1182592:1
position: 1182592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1182874:1
position: 1182874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1184929-1185180:1:exon

position:1184929:1
position: 1184929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1185180:1
position: 1185180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1185395-1185547:1:exon

position:1185395:1
position: 1185395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1185547:1
position: 1185547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1185890-1186048:1:exon

position:1185890:1
position: 1185890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1186048:1
position: 1186048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1187210-1187299:1:exon

position:1187210:1
position: 1187210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1187299:1
position: 1187299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1188735-1188853:1:exon

position:1188735:1
position: 1188735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1188853:1
position: 1188853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1190797-1191007:1:exon

position:1190797:1
position: 1190797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1191007:1
position: 1191007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1193084-1193200:1:exon

position:1193084:1
position: 1193084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1193200:1
position: 1193200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1193925-1194163:1:exon

position:1193925:1
position: 1193925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1194163:1
position: 1194163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1194940-1195123:1:exon

position:1194940:1
position: 1194940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1195123:1
position: 1195123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1195327-1195900:1:exon

position:1195327:1
position: 1195327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1195900:1
position: 1195900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1196387-1196556:1:exon

position:1196387:1
position: 1196387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1196556:1
position: 1196556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1197629-1197802:1:exon

position:1197629:1
position: 1197629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1197802:1
position: 1197802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1198606-1198698:1:exon

position:1198606:1
position: 1198606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1198698:1
position: 1198698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:1199032-1199126:1:exon

position:1199032:1
position: 1199032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1199126:1
position: 1199126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:1199615-1199822:1:exon

position:1199615:1
position: 1199615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1199822:1
position: 1199822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:1200429-1201689:1:exon

position:1200429:1
position: 1200429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SIN3A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: SIN3A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: paired amphipathic helix protein Sin3a
translation: MKRRLDEQESPVYASQQRRITSSTEAFQHQHRVLAPAPPVYEAVSETMQSATGIQYSVTPSYQVSAVPQSSGSHGPAIAAVHSGHHHPAPVQPHGSQVVQSHTHPTPPAVPVQGQQQFQRLKVEDALSYLDQVKLQFGSQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNTFLPPGYKIEVQTNDMVNVTTPGQVHQIPTHGLQPQPQPQPQHQSQPSAQSTPTPAQPAPQPPPAKISKPSQLQAHTPTSQQTPPIPPYASPRSPPVQPHTPVTISLGTTPSLQNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEFGQFLPDANSSVLLSKTTAEKVESVRNDHGGTVKKPQLNNKQQRPNQNGCQIRRHSGTGATPPVKKKPKLLGLKDQSLAEASKHGVGTESLFFEKVRKALRSTEAYENFLRCLVIFNQEVISRAELVQLVSPFLGKFPELFTWFKNFLGYKESVHMETYPKERATEGIAMEIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQYEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLSAEEQAKFRLDNTLGGTSEVIHRKALQRIYADKAADIIDGLRKNPSVAVPIVLKRLKMKEEEWREAQRGFNKVWREQNEKYYLKSLDHQGINFKQNDTKVLRSKSLLNEIESIYDERQEQASEDNAGVPTGPHLSLAYEDKQILEDAASLIIHHVKRQTGIQKEDKYKIKQIMYHFIPDLLFAQRGELSDVEEEEEEEMDVDEATGAAKKHNGVGGSPPKTKLMFNNTTAQKLRGMDEVYNLFYVNSNWYIFMRLHQILCLRLLRICTQAERQIEEETREREWEREVLGIKRDKSDSPAIQLRLKEPMDIDVEDYYPAFLDMVRNLLDGNMDSSQYEDSLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDEICVQVTDLYLSENNNGATGGLLASQSSRTLLEAAYQRKAEQLMSEENCFKLMFIQSRGQVQLTIELLDTEEENSDDPVEAERWSDYVERYVNSDSTSPELREHLAQKPVFLPRNLRRIRKCQRGREQQEKEGKEGNSKKSMENVESLDKLECKFKLNSYKMVYVIKSEDYMYRRTALLRAQQSHERVSKRLHQRFQAWVDKWTKEHVPREMAAETSKWLMGEGLEGLVPCTTTCDTETLHFVSINKYRVKYGTIFKTP
SIO_010081: SIN3A
subclass of: SO_0000673
so part of: SIN3A
location: join(1178106..1178294,1179968..1180144,1181574..1181680,1182592..1182874,1184929..1185180,1185395..1185547,1185890..1186048,1187210..1187299,1188735..1188853,1190797..1191007,1193084..1193200,1193925..1194163,1194940..1195123,1195327..1195900,1196387..1196556,1197629..1197802,1198606..1198698,1199032..1199126,1199615..1199822,1200429..1200659)
location: region:1178106-1200659:1
so has part: feature:1178106-1178294:1:exon
so has part: feature:1179968-1180144:1:exon
so has part: feature:1181574-1181680:1:exon
so has part: feature:1182592-1182874:1:exon
so has part: feature:1184929-1185180:1:exon
so has part: feature:1185395-1185547:1:exon
so has part: feature:1185890-1186048:1:exon
so has part: feature:1187210-1187299:1:exon
so has part: feature:1188735-1188853:1:exon
so has part: feature:1190797-1191007:1:exon
so has part: feature:1193084-1193200:1:exon
so has part: feature:1193925-1194163:1:exon
so has part: feature:1194940-1195123:1:exon
so has part: feature:1195327-1195900:1:exon
so has part: feature:1196387-1196556:1:exon
so has part: feature:1197629-1197802:1:exon
so has part: feature:1198606-1198698:1:exon
so has part: feature:1199032-1199126:1:exon
so has part: feature:1199615-1199822:1:exon
so has part: feature:1200429-1200659:1:exon

XP_030312826.1
type: Protein
SIO_000068: ncbiprotein

position:1178106:1
position: 1178106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1200659:1
position: 1200659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1178106-1178294:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1179968-1180144:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1181574-1181680:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1182592-1182874:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1184929-1185180:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1185395-1185547:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1185890-1186048:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1187210-1187299:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1188735-1188853:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1190797-1191007:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1193084-1193200:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1193925-1194163:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1194940-1195123:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1195327-1195900:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1196387-1196556:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1197629-1197802:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1198606-1198698:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1199032-1199126:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1199615-1199822:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1200429-1200659:1:exon

MAN2C1
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: MAN2C1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1203302..1216317
location: region:1203302-1216317:1
so has part: feature:1203302-1216317:1:exon
subclass of: SO_0000010

103528735
type: Gene
SIO_000068: ncbigene

position:1203302:1
position: 1203302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1216317:1
position: 1216317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1203302-1216317:1:exon

MAN2C1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: MAN2C1
product: mannosidase alpha class 2C member 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 ESTs, 1 long SRA read, 12 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_030456969.1
SIO_010081: MAN2C1
subclass of: SO_0000673
so part of: MAN2C1
location: join(1203302..1203608,1203867..1203992,1204586..1204709,1205592..1205662,1205904..1206081,1206558..1206747,1207171..1207277,1207447..1207557,1207837..1207929,1208843..1208959,1209217..1209312,1209597..1209742,1210131..1210254,1210701..1210822,1211255..1211340,1211864..1212034,1212320..1212402,1212586..1212680,1212815..1212919,1213061..1213217,1213986..1214129,1214211..1214320,1215170..1215249,1215372..1215517,1215658..1215761,1215845..1216317)
location: region:1203302-1216317:1
so has part: feature:1203302-1203608:1:exon
so has part: feature:1203867-1203992:1:exon
so has part: feature:1204586-1204709:1:exon
so has part: feature:1205592-1205662:1:exon
so has part: feature:1205904-1206081:1:exon
so has part: feature:1206558-1206747:1:exon
so has part: feature:1207171-1207277:1:exon
so has part: feature:1207447-1207557:1:exon
so has part: feature:1207837-1207929:1:exon
so has part: feature:1208843-1208959:1:exon
so has part: feature:1209217-1209312:1:exon
so has part: feature:1209597-1209742:1:exon
so has part: feature:1210131-1210254:1:exon
so has part: feature:1210701-1210822:1:exon
so has part: feature:1211255-1211340:1:exon
so has part: feature:1211864-1212034:1:exon
so has part: feature:1212320-1212402:1:exon
so has part: feature:1212586-1212680:1:exon
so has part: feature:1212815-1212919:1:exon
so has part: feature:1213061-1213217:1:exon
so has part: feature:1213986-1214129:1:exon
so has part: feature:1214211-1214320:1:exon
so has part: feature:1215170-1215249:1:exon
so has part: feature:1215372-1215517:1:exon
so has part: feature:1215658-1215761:1:exon
so has part: feature:1215845-1216317:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1203302-1203608:1:exon

position:1203608:1
position: 1203608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1203867-1203992:1:exon

position:1203867:1
position: 1203867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1203992:1
position: 1203992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1204586-1204709:1:exon

position:1204586:1
position: 1204586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1204709:1
position: 1204709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1205592-1205662:1:exon

position:1205592:1
position: 1205592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1205662:1
position: 1205662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1205904-1206081:1:exon

position:1205904:1
position: 1205904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1206081:1
position: 1206081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1206558-1206747:1:exon

position:1206558:1
position: 1206558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1206747:1
position: 1206747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1207171-1207277:1:exon

position:1207171:1
position: 1207171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1207277:1
position: 1207277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1207447-1207557:1:exon

position:1207447:1
position: 1207447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1207557:1
position: 1207557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1207837-1207929:1:exon

position:1207837:1
position: 1207837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1207929:1
position: 1207929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1208843-1208959:1:exon

position:1208843:1
position: 1208843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1208959:1
position: 1208959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1209217-1209312:1:exon

position:1209217:1
position: 1209217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1209312:1
position: 1209312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1209597-1209742:1:exon

position:1209597:1
position: 1209597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1209742:1
position: 1209742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1210131-1210254:1:exon

position:1210131:1
position: 1210131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1210254:1
position: 1210254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1210701-1210822:1:exon

position:1210701:1
position: 1210701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1210822:1
position: 1210822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1211255-1211340:1:exon

position:1211255:1
position: 1211255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1211340:1
position: 1211340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1211864-1212034:1:exon

position:1211864:1
position: 1211864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1212034:1
position: 1212034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1212320-1212402:1:exon

position:1212320:1
position: 1212320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1212402:1
position: 1212402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1212586-1212680:1:exon

position:1212586:1
position: 1212586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1212680:1
position: 1212680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:1212815-1212919:1:exon

position:1212815:1
position: 1212815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1212919:1
position: 1212919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:1213061-1213217:1:exon

position:1213061:1
position: 1213061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1213217:1
position: 1213217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:1213986-1214129:1:exon

position:1213986:1
position: 1213986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1214129:1
position: 1214129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:1214211-1214320:1:exon

position:1214211:1
position: 1214211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1214320:1
position: 1214320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:1215170-1215249:1:exon

position:1215170:1
position: 1215170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1215249:1
position: 1215249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:1215372-1215517:1:exon

position:1215372:1
position: 1215372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1215517:1
position: 1215517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:1215658-1215761:1:exon

position:1215658:1
position: 1215658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1215761:1
position: 1215761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:1215845-1216317:1:exon

position:1215845:1
position: 1215845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MAN2C1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: MAN2C1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: alpha-mannosidase 2C1
translation: MAALKHRRTVLERVEKFLSETYFTDCNLRGRLFGDRCPVASLSYFQAPRRIPYDEAVEQDFRPAQVGDSFGPLWGTCWFKVELSIPTAWAGREVHFIWESDGEGMVWRDAQPVQGLTKEGEKTSYILTSSLKETEPHSLMLYVELACNGLFGAGKGSMIAPPDPEKRFTLSKAELVVFNRDVYELLVDLEILLDMAKLLGEEDQRSFQALYTANQMVNVCDVMDPSTFPAARDLAAEIFSQRNGESQHTIHAMGHCHIDSAWLWPYEETIRKCARSWVTVIRLMEHNPELTFACSQAQQFEWVRSVYPGLYARIQDFVAKGQFIPVGGTWVEMDGNLPSGESMVRQFLQGQRFFQEQFGRLCSEFWLPDTFGYSAQLPQLMRGCGIRRFLTQKLSWNLVNTFPHHTFFWEGIDGSRVLTHFPPGDSYGMHGQVEEVLKTLKNNKDKGYVNHSAFLFGFGDGGGGPTQKMLDRMKRMRDTDGLPRVQLSTPDQLFSILEKDSSHLCTWVGELFLELHNGTYTTQAQIKKGNRECERILHDVEVLSTLAVARDSTFQYPASQLQQLWRLLLLNQFHDVLPGSCIQLVVEDALQYYTEIRRAGAVLQEEAVQGLCRDLLQPEVGSTQSTLVLNTLPWERTEVISRSGPPGAETLAMVTVPSMGYTIVREPLLPPQLVTVWKQEDGSVVMENGVIAVCLDAMGRLTSLQLVGSERESVADGCCANQFALFDDVPLYWDAWDVMDYHLETRKPVTTLLKPLNVTLGGGLRGSASFSLQVGKSSTLTQEIILDATSPYLRFLTQVEWKEAHKFLKVEFPVQVRSTNATYEIQFGHLQRPTHRNTSWDWARFEVWAHKWLDLSEHGFGVALLNDCKYGASALGNVLSLSLLRAPKSPDAMADIGYHEFTYAVMPHQGSLQEAGVIQCAYNLNFPLHTVPTSSAQCPTWSAFSVSSPAVVLETVKQAEDRPEAMVVRLYEAHGSTVVAWLQTSLPVKEAMLCDLLEQPVKGGCLPLEPGGVRLSFTPFHVLSLLLVLEL
SIO_010081: MAN2C1
subclass of: SO_0000673
so part of: MAN2C1
location: join(1203517..1203608,1203867..1203992,1204586..1204709,1205592..1205662,1205904..1206081,1206558..1206747,1207171..1207277,1207447..1207557,1207837..1207929,1208843..1208959,1209217..1209312,1209597..1209742,1210131..1210254,1210701..1210822,1211255..1211340,1211864..1212034,1212320..1212402,1212586..1212680,1212815..1212919,1213061..1213217,1213986..1214129,1214211..1214320,1215170..1215249,1215372..1215517,1215658..1215761,1215845..1215962)
location: region:1203517-1215962:1
so has part: feature:1203517-1203608:1:exon
so has part: feature:1203867-1203992:1:exon
so has part: feature:1204586-1204709:1:exon
so has part: feature:1205592-1205662:1:exon
so has part: feature:1205904-1206081:1:exon
so has part: feature:1206558-1206747:1:exon
so has part: feature:1207171-1207277:1:exon
so has part: feature:1207447-1207557:1:exon
so has part: feature:1207837-1207929:1:exon
so has part: feature:1208843-1208959:1:exon
so has part: feature:1209217-1209312:1:exon
so has part: feature:1209597-1209742:1:exon
so has part: feature:1210131-1210254:1:exon
so has part: feature:1210701-1210822:1:exon
so has part: feature:1211255-1211340:1:exon
so has part: feature:1211864-1212034:1:exon
so has part: feature:1212320-1212402:1:exon
so has part: feature:1212586-1212680:1:exon
so has part: feature:1212815-1212919:1:exon
so has part: feature:1213061-1213217:1:exon
so has part: feature:1213986-1214129:1:exon
so has part: feature:1214211-1214320:1:exon
so has part: feature:1215170-1215249:1:exon
so has part: feature:1215372-1215517:1:exon
so has part: feature:1215658-1215761:1:exon
so has part: feature:1215845-1215962:1:exon

XP_030312829.1
type: Protein
SIO_000068: ncbiprotein

position:1203517:1
position: 1203517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1215962:1
position: 1215962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1203517-1203608:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1203867-1203992:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1204586-1204709:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1205592-1205662:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1205904-1206081:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1206558-1206747:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1207171-1207277:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1207447-1207557:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1207837-1207929:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1208843-1208959:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1209217-1209312:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1209597-1209742:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1210131-1210254:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1210701-1210822:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1211255-1211340:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1211864-1212034:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1212320-1212402:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1212586-1212680:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1212815-1212919:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1213061-1213217:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1213986-1214129:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1214211-1214320:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1215170-1215249:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1215372-1215517:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1215658-1215761:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1215845-1215962:1:exon

NEIL1
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: NEIL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1216582..1220750)
location: region:1216582-1220750:-1
so has part: feature:1216582-1220750:-1:exon
subclass of: SO_0000010

103528734
type: Gene
SIO_000068: ncbigene

position:1216582:-1
position: 1216582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1220750:-1
position: 1220750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1216582-1220750:-1:exon

NEIL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: NEIL1
product: nei like DNA glycosylase 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_030456993.1
SIO_010081: NEIL1
subclass of: SO_0000673
so part of: NEIL1
location: complement(join(1216582..1216931,1217091..1217298,1217444..1217505,1218010..1218037,1218338..1218462,1218561..1218660,1219792..1219870,1220000..1220119,1220279..1220750))
location: region:1216582-1220750:-1
so has part: feature:1220279-1220750:-1:exon
so has part: feature:1220000-1220119:-1:exon
so has part: feature:1219792-1219870:-1:exon
so has part: feature:1218561-1218660:-1:exon
so has part: feature:1218338-1218462:-1:exon
so has part: feature:1218010-1218037:-1:exon
so has part: feature:1217444-1217505:-1:exon
so has part: feature:1217091-1217298:-1:exon
so has part: feature:1216582-1216931:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1220279-1220750:-1:exon

position:1220279:-1
position: 1220279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1220000-1220119:-1:exon

position:1220000:-1
position: 1220000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1220119:-1
position: 1220119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1219792-1219870:-1:exon

position:1219792:-1
position: 1219792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1219870:-1
position: 1219870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1218561-1218660:-1:exon

position:1218561:-1
position: 1218561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1218660:-1
position: 1218660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1218338-1218462:-1:exon

position:1218338:-1
position: 1218338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1218462:-1
position: 1218462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1218010-1218037:-1:exon

position:1218010:-1
position: 1218010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1218037:-1
position: 1218037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1217444-1217505:-1:exon

position:1217444:-1
position: 1217444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1217505:-1
position: 1217505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1217091-1217298:-1:exon

position:1217091:-1
position: 1217091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1217298:-1
position: 1217298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1216582-1216931:-1:exon

position:1216931:-1
position: 1216931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NEIL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: NEIL1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: endonuclease 8-like 1
translation: MPEGPELHLAGRYINEACGELVFSGGVERSAVGRGPEVPFTSQAYRVSAASRGKELRLRLIPLGPGQHQDLVFRFGMSGSFRLCPAAQLPRHAHLRFLTRESPPRALCFVDPRRFGSWRLGDAWQPDRGPCVLSEYQAFRENVLKNLDDKAFDKPICEALLDQKFFNGIGNYLRAEILYRLKIPPFEKARTVLEALKEQEQAKRKKSPSLTLSKKLKLMRGSPDLLELCHTVPLEVIAAEKNLLEPDHSDNYAAFKNWLQCYLVPGMSSLHDRHGRTIWFQGEPGPMAPKGQMPRKKRTQVKADPEAQTPKVTTRALKRPPRAAAKPPKPATVEEKEEVADGLRKGRVLKRRKAAAAPASSKPKPPAKARSCRTSARRGRGTAPAM
SIO_010081: NEIL1
subclass of: SO_0000673
so part of: NEIL1
location: complement(join(1216912..1216931,1217091..1217298,1217444..1217505,1218010..1218037,1218338..1218462,1218561..1218660,1219792..1219870,1220000..1220119,1220279..1220698))
location: region:1216912-1220698:-1
so has part: feature:1220279-1220698:-1:exon
so has part: feature:1220000-1220119:-1:exon
so has part: feature:1219792-1219870:-1:exon
so has part: feature:1218561-1218660:-1:exon
so has part: feature:1218338-1218462:-1:exon
so has part: feature:1218010-1218037:-1:exon
so has part: feature:1217444-1217505:-1:exon
so has part: feature:1217091-1217298:-1:exon
so has part: feature:1216912-1216931:-1:exon

XP_030312853.1
type: Protein
SIO_000068: ncbiprotein

position:1216912:-1
position: 1216912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1220698:-1
position: 1220698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1220279-1220698:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1220000-1220119:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1219792-1219870:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1218561-1218660:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1218338-1218462:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1218010-1218037:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1217444-1217505:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1217091-1217298:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1216912-1216931:-1:exon

COMMD4
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: COMMD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1220892..1222375)
location: region:1220892-1222375:-1
so has part: feature:1220892-1222375:-1:exon
subclass of: SO_0000010

115598829
type: Gene
SIO_000068: ncbigene

position:1220892:-1
position: 1220892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1222375:-1
position: 1222375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1220892-1222375:-1:exon

COMMD4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: COMMD4
product: COMM domain containing 4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 long SRA read, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_030457022.1
SIO_010081: COMMD4
subclass of: SO_0000673
so part of: COMMD4
location: complement(join(1220892..1221077,1221154..1221330,1221420..1221500,1221661..1221780,1221855..1221894,1221980..1222045,1222141..1222212,1222290..1222375))
location: region:1220892-1222375:-1
so has part: feature:1222290-1222375:-1:exon
so has part: feature:1222141-1222212:-1:exon
so has part: feature:1221980-1222045:-1:exon
so has part: feature:1221855-1221894:-1:exon
so has part: feature:1221661-1221780:-1:exon
so has part: feature:1221420-1221500:-1:exon
so has part: feature:1221154-1221330:-1:exon
so has part: feature:1220892-1221077:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1222290-1222375:-1:exon

position:1222290:-1
position: 1222290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1222141-1222212:-1:exon

position:1222141:-1
position: 1222141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1222212:-1
position: 1222212
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1221980-1222045:-1:exon

position:1221980:-1
position: 1221980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1222045:-1
position: 1222045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1221855-1221894:-1:exon

position:1221855:-1
position: 1221855
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1221894:-1
position: 1221894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1221661-1221780:-1:exon

position:1221661:-1
position: 1221661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1221780:-1
position: 1221780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1221420-1221500:-1:exon

position:1221420:-1
position: 1221420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1221500:-1
position: 1221500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1221154-1221330:-1:exon

position:1221154:-1
position: 1221154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1221330:-1
position: 1221330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1220892-1221077:-1:exon

position:1221077:-1
position: 1221077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

COMMD4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: COMMD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: COMM domain-containing protein 4
translation: MRFRFCGDLDCPDWVLAEISTLAKISSVKLKLICAQVLRDMLGEAMEYEKILKLTSDAKLESGDVKATIAVLGFILSSAAKHNVDSESLSSELQQLGLPKEHASGLCRSYEEKQSCLQDRLRACSLRLSRLGSVGWRVDYTLSSSELWEVNEPLVHLSFNLRDGQCGRADTIPVTLSADKFQVLLAELKQAQALMNTLL
SIO_010081: COMMD4
subclass of: SO_0000673
so part of: COMMD4
location: complement(join(1221037..1221077,1221154..1221330,1221420..1221500,1221661..1221780,1221855..1221894,1221980..1222045,1222141..1222212,1222290..1222292))
location: region:1221037-1222292:-1
so has part: feature:1222290-1222292:-1:exon
so has part: feature:1222141-1222212:-1:exon
so has part: feature:1221980-1222045:-1:exon
so has part: feature:1221855-1221894:-1:exon
so has part: feature:1221661-1221780:-1:exon
so has part: feature:1221420-1221500:-1:exon
so has part: feature:1221154-1221330:-1:exon
so has part: feature:1221037-1221077:-1:exon

XP_030312882.1
type: Protein
SIO_000068: ncbiprotein

position:1221037:-1
position: 1221037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1222292:-1
position: 1222292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1222290-1222292:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1222141-1222212:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1221980-1222045:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1221855-1221894:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1221661-1221780:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1221420-1221500:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1221154-1221330:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1221037-1221077:-1:exon

LOC115598828
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: LOC115598828
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1222307..1223758
location: region:1222307-1223758:1
so has part: feature:1222307-1223758:1:exon
subclass of: SO_0000010

115598828
type: Gene
SIO_000068: ncbigene

position:1222307:1
position: 1222307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1223758:1
position: 1223758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1222307-1223758:1:exon

LOC115598828
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: LOC115598828
product: translation initiation factor IF-2-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030457019.1
SIO_010081: LOC115598828
subclass of: SO_0000673
so part of: LOC115598828
location: join(1222307..1222491,1223042..1223758)
location: region:1222307-1223758:1
so has part: feature:1222307-1222491:1:exon
so has part: feature:1223042-1223758:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1222307-1222491:1:exon

position:1222491:1
position: 1222491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1223042-1223758:1:exon

position:1223042:1
position: 1223042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115598828
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: LOC115598828
product: translation initiation factor IF-2-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030457020.1
SIO_010081: LOC115598828
subclass of: SO_0000673
so part of: LOC115598828
location: join(1222307..1222491,1223111..1223758)
location: region:1222307-1223758:1
so has part: feature:1222307-1222491:1:exon
so has part: feature:1223111-1223758:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1222307-1222491:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1223111-1223758:1:exon

position:1223111:1
position: 1223111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC115598828
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: LOC115598828
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC115598828 isoform X1
translation: MPPQIPPPPPGTVPGGSREERARPGPERVERLRSSLGGSGSAFCCSPVRKGGGSPGGHGSITTPWPVFQLQPYNLSFIFISDSSSDPMVQLRHPWFLFQLLPQLHSMDFSSSPTSFTAAPAPPRVSQLQPLQLHSRPSGGSRASPARHGPTQLPLAASPEAQHRNPLLRTALYRPRPRPSRRHSQSRTEAAPGPAQPASVRSFPPAPAPQAPVPLSLRRATGGPAPMLQLRQRLLGPGAGGGSAQGRSQGPIEPRSREWLK
SIO_010081: LOC115598828
subclass of: SO_0000673
so part of: LOC115598828
location: join(1222317..1222491,1223042..1223652)
location: region:1222317-1223652:1
so has part: feature:1222317-1222491:1:exon
so has part: feature:1223042-1223652:1:exon

XP_030312879.1
type: Protein
SIO_000068: ncbiprotein

position:1222317:1
position: 1222317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1223652:1
position: 1223652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1222317-1222491:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1223042-1223652:1:exon

LOC115598828
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: LOC115598828
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC115598828 isoform X2
translation: MPPQIPPPPPGTVPGGSREERARPGPERVERLRSSLGGSGSAFCCSPVRKGGGSPGGHDSSSDPMVQLRHPWFLFQLLPQLHSMDFSSSPTSFTAAPAPPRVSQLQPLQLHSRPSGGSRASPARHGPTQLPLAASPEAQHRNPLLRTALYRPRPRPSRRHSQSRTEAAPGPAQPASVRSFPPAPAPQAPVPLSLRRATGGPAPMLQLRQRLLGPGAGGGSAQGRSQGPIEPRSREWLK
SIO_010081: LOC115598828
subclass of: SO_0000673
so part of: LOC115598828
location: join(1222317..1222491,1223111..1223652)
location: region:1222317-1223652:1
so has part: feature:1222317-1222491:1:exon
so has part: feature:1223111-1223652:1:exon

XP_030312880.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1222317-1222491:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1223111-1223652:1:exon

LOC115598835
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: LOC115598835
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1226820..1227169)
location: region:1226820-1227169:-1
so has part: feature:1226820-1227169:-1:exon
subclass of: SO_0000011

115598835
type: Gene
SIO_000068: ncbigene

position:1226820:-1
position: 1226820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1227169:-1
position: 1227169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1226820-1227169:-1:exon

LOC115598835
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9244
nc RNA class: lncRNA
gene: LOC115598835
product: uncharacterized LOC115598835
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_003987963.1
SIO_010081: LOC115598835
subclass of: SO_0000673
so part of: LOC115598835
location: complement(join(1226820..1226944,1227096..1227169))
location: region:1226820-1227169:-1
so has part: feature:1227096-1227169:-1:exon
so has part: feature:1226820-1226944:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1227096-1227169:-1:exon

position:1227096:-1
position: 1227096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1226820-1226944:-1:exon

position:1226944:-1
position: 1226944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115598867
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: LOC115598867
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1252561..1255158)
location: region:1252561-1255158:-1
so has part: feature:1252561-1255158:-1:exon
subclass of: SO_0000010

115598867
type: Gene
SIO_000068: ncbigene

position:1252561:-1
position: 1252561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1255158:-1
position: 1255158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1252561-1255158:-1:exon

LOC115598867
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: LOC115598867
product: ubiquitin carboxyl-terminal hydrolase 36-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 28% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_030457268.1
SIO_010081: LOC115598867
subclass of: SO_0000673
so part of: LOC115598867
location: complement(join(1252561..1252724,1252894..1252964,1253124..1253288,1253369..1253479,1253926..1254042,1254186..1254240,1254836..1255081,1255144..1255158))
location: region:1252561-1255158:-1
so has part: feature:1255144-1255158:-1:exon
so has part: feature:1254836-1255081:-1:exon
so has part: feature:1254186-1254240:-1:exon
so has part: feature:1253926-1254042:-1:exon
so has part: feature:1253369-1253479:-1:exon
so has part: feature:1253124-1253288:-1:exon
so has part: feature:1252894-1252964:-1:exon
so has part: feature:1252561-1252724:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1255144-1255158:-1:exon

position:1255144:-1
position: 1255144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1254836-1255081:-1:exon

position:1254836:-1
position: 1254836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1255081:-1
position: 1255081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1254186-1254240:-1:exon

position:1254186:-1
position: 1254186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1254240:-1
position: 1254240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1253926-1254042:-1:exon

position:1253926:-1
position: 1253926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1254042:-1
position: 1254042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1253369-1253479:-1:exon

position:1253369:-1
position: 1253369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1253479:-1
position: 1253479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1253124-1253288:-1:exon

position:1253124:-1
position: 1253124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1253288:-1
position: 1253288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1252894-1252964:-1:exon

position:1252894:-1
position: 1252894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1252964:-1
position: 1252964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1252561-1252724:-1:exon

position:1252724:-1
position: 1252724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC115598867
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9244
gene: LOC115598867
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin carboxyl-terminal hydrolase 36-like
translation: MEQGWTIPTIASCQDNSVEVLPIPSAKSRRVGNPQELAEGKSQTLPKALLEGCEGRDVGWIPTCAPEAIWLPQTVVAAMELEGSRTQPLLRLHDFLSLRFELVSLVGAGLENLGSTCFLNAVLQCLTYTPSLADYLLSREHSQSCVRAGNCVMCRVQEHVCKVLHATGSAIVPVDVITALPEIGEHFKLGVQEDAHEFLRCTLDAMQKAHLCDGSLDTSCQHTVIHQIFGSFLRSRVCCSSCQVVFDDYEPFLDILLDIKAAASLSEALDTFVKPELLDARSGFRCRQ
SIO_010081: LOC115598867
subclass of: SO_0000673
so part of: LOC115598867
location: complement(join(1252638..1252724,1252894..1252964,1253124..1253288,1253369..1253479,1253926..1254042,1254186..1254240,1254836..1255081,1255144..1255158))
location: region:1252638-1255158:-1
so has part: feature:1255144-1255158:-1:exon
so has part: feature:1254836-1255081:-1:exon
so has part: feature:1254186-1254240:-1:exon
so has part: feature:1253926-1254042:-1:exon
so has part: feature:1253369-1253479:-1:exon
so has part: feature:1253124-1253288:-1:exon
so has part: feature:1252894-1252964:-1:exon
so has part: feature:1252638-1252724:-1:exon

XP_030313128.1
type: Protein
SIO_000068: ncbiprotein

position:1252638:-1
position: 1252638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1255144-1255158:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1254836-1255081:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1254186-1254240:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1253926-1254042:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1253369-1253479:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1253124-1253288:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1252894-1252964:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1252638-1252724:-1:exon

HERC1
type: Gene
subclass of: SO_0000704
RO_0002162: 9244
gene: HERC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1257389..1357343)
location: region:1257389-1357343:-1
so has part: feature:1257389-1357343:-1:exon
subclass of: SO_0000010

103537269
type: Gene
SIO_000068: ncbigene

position:1257389:-1
position: 1257389
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1357343:-1
position: 1357343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1257389-1357343:-1:exon

HERC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: HERC1
product: HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 65 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_030456956.1
SIO_010081: HERC1
subclass of: SO_0000673
so part of: HERC1
location: complement(join(1257389..1258058,1259038..1259343,1260333..1260485,1260733..1260985,1261396..1261472,1261959..1262124,1262278..1262447,1262820..1262989,1263278..1263416,1265346..1265515,1266204..1266306,1266793..1266915,1267416..1267571,1268316..1268497,1268934..1269072,1269687..1269812,1269915..1269980,1270695..1270988,1271287..1271460,1272464..1272565,1273086..1273232,1273776..1273890,1275182..1275381,1276066..1276196,1277443..1277643,1278877..1279004,1280771..1280898,1282351..1282607,1283297..1283510,1283972..1284242,1284951..1285125,1285711..1285911,1287171..1287223,1287743..1288011,1289220..1289440,1290039..1290163,1291331..1291562,1291748..1291864,1292551..1292711,1293635..1293833,1294910..1295685,1296766..1297286,1298773..1298856,1299061..1299300,1300087..1300263,1300365..1300475,1300723..1300829,1301035..1301190,1301800..1301993,1302994..1303231,1304180..1304300,1304386..1304601,1304906..1305180,1313195..1313246,1313537..1313657,1314960..1315266,1317247..1317418,1318597..1318717,1318815..1318929,1319457..1319630,1320486..1320707,1321817..1322008,1322487..1322619,1322783..1322935,1324020..1324241,1325373..1325498,1326062..1326227,1327438..1327572,1328649..1328820,1328919..1329063,1329674..1329801,1331041..1331184,1333149..1333245,1333924..1334235,1336467..1336661,1336969..1337064,1338376..1339333,1357222..1357343))
location: region:1257389-1357343:-1
so has part: feature:1357222-1357343:-1:exon
so has part: feature:1338376-1339333:-1:exon
so has part: feature:1336969-1337064:-1:exon
so has part: feature:1336467-1336661:-1:exon
so has part: feature:1333924-1334235:-1:exon
so has part: feature:1333149-1333245:-1:exon
so has part: feature:1331041-1331184:-1:exon
so has part: feature:1329674-1329801:-1:exon
so has part: feature:1328919-1329063:-1:exon
so has part: feature:1328649-1328820:-1:exon
so has part: feature:1327438-1327572:-1:exon
so has part: feature:1326062-1326227:-1:exon
so has part: feature:1325373-1325498:-1:exon
so has part: feature:1324020-1324241:-1:exon
so has part: feature:1322783-1322935:-1:exon
so has part: feature:1322487-1322619:-1:exon
so has part: feature:1321817-1322008:-1:exon
so has part: feature:1320486-1320707:-1:exon
so has part: feature:1319457-1319630:-1:exon
so has part: feature:1318815-1318929:-1:exon
so has part: feature:1318597-1318717:-1:exon
so has part: feature:1317247-1317418:-1:exon
so has part: feature:1314960-1315266:-1:exon
so has part: feature:1313537-1313657:-1:exon
so has part: feature:1313195-1313246:-1:exon
so has part: feature:1304906-1305180:-1:exon
so has part: feature:1304386-1304601:-1:exon
so has part: feature:1304180-1304300:-1:exon
so has part: feature:1302994-1303231:-1:exon
so has part: feature:1301800-1301993:-1:exon
so has part: feature:1301035-1301190:-1:exon
so has part: feature:1300723-1300829:-1:exon
so has part: feature:1300365-1300475:-1:exon
so has part: feature:1300087-1300263:-1:exon
so has part: feature:1299061-1299300:-1:exon
so has part: feature:1298773-1298856:-1:exon
so has part: feature:1296766-1297286:-1:exon
so has part: feature:1294910-1295685:-1:exon
so has part: feature:1293635-1293833:-1:exon
so has part: feature:1292551-1292711:-1:exon
so has part: feature:1291748-1291864:-1:exon
so has part: feature:1291331-1291562:-1:exon
so has part: feature:1290039-1290163:-1:exon
so has part: feature:1289220-1289440:-1:exon
so has part: feature:1287743-1288011:-1:exon
so has part: feature:1287171-1287223:-1:exon
so has part: feature:1285711-1285911:-1:exon
so has part: feature:1284951-1285125:-1:exon
so has part: feature:1283972-1284242:-1:exon
so has part: feature:1283297-1283510:-1:exon
so has part: feature:1282351-1282607:-1:exon
so has part: feature:1280771-1280898:-1:exon
so has part: feature:1278877-1279004:-1:exon
so has part: feature:1277443-1277643:-1:exon
so has part: feature:1276066-1276196:-1:exon
so has part: feature:1275182-1275381:-1:exon
so has part: feature:1273776-1273890:-1:exon
so has part: feature:1273086-1273232:-1:exon
so has part: feature:1272464-1272565:-1:exon
so has part: feature:1271287-1271460:-1:exon
so has part: feature:1270695-1270988:-1:exon
so has part: feature:1269915-1269980:-1:exon
so has part: feature:1269687-1269812:-1:exon
so has part: feature:1268934-1269072:-1:exon
so has part: feature:1268316-1268497:-1:exon
so has part: feature:1267416-1267571:-1:exon
so has part: feature:1266793-1266915:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1357222-1357343:-1:exon

position:1357222:-1
position: 1357222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1338376-1339333:-1:exon

position:1338376:-1
position: 1338376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1339333:-1
position: 1339333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1336969-1337064:-1:exon

position:1336969:-1
position: 1336969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1337064:-1
position: 1337064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1336467-1336661:-1:exon

position:1336467:-1
position: 1336467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1336661:-1
position: 1336661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1333924-1334235:-1:exon

position:1333924:-1
position: 1333924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1334235:-1
position: 1334235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1333149-1333245:-1:exon

position:1333149:-1
position: 1333149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1333245:-1
position: 1333245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1331041-1331184:-1:exon

position:1331041:-1
position: 1331041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1331184:-1
position: 1331184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1329674-1329801:-1:exon

position:1329674:-1
position: 1329674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1329801:-1
position: 1329801
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1328919-1329063:-1:exon

position:1328919:-1
position: 1328919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1329063:-1
position: 1329063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1328649-1328820:-1:exon

position:1328649:-1
position: 1328649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1328820:-1
position: 1328820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1327438-1327572:-1:exon

position:1327438:-1
position: 1327438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1327572:-1
position: 1327572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1326062-1326227:-1:exon

position:1326062:-1
position: 1326062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1326227:-1
position: 1326227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1325373-1325498:-1:exon

position:1325373:-1
position: 1325373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1325498:-1
position: 1325498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1324020-1324241:-1:exon

position:1324020:-1
position: 1324020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1324241:-1
position: 1324241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1322783-1322935:-1:exon

position:1322783:-1
position: 1322783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1322935:-1
position: 1322935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1322487-1322619:-1:exon

position:1322487:-1
position: 1322487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1322619:-1
position: 1322619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1321817-1322008:-1:exon

position:1321817:-1
position: 1321817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1322008:-1
position: 1322008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1320486-1320707:-1:exon

position:1320486:-1
position: 1320486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1320707:-1
position: 1320707
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:1319457-1319630:-1:exon

position:1319457:-1
position: 1319457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1319630:-1
position: 1319630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:1318815-1318929:-1:exon

position:1318815:-1
position: 1318815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1318929:-1
position: 1318929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:1318597-1318717:-1:exon

position:1318597:-1
position: 1318597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1318717:-1
position: 1318717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:1317247-1317418:-1:exon

position:1317247:-1
position: 1317247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1317418:-1
position: 1317418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:1314960-1315266:-1:exon

position:1314960:-1
position: 1314960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1315266:-1
position: 1315266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:1313537-1313657:-1:exon

position:1313537:-1
position: 1313537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1313657:-1
position: 1313657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:1313195-1313246:-1:exon

position:1313195:-1
position: 1313195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1313246:-1
position: 1313246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:1304906-1305180:-1:exon

position:1304906:-1
position: 1304906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1305180:-1
position: 1305180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:1304386-1304601:-1:exon

position:1304386:-1
position: 1304386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1304601:-1
position: 1304601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:1304180-1304300:-1:exon

position:1304180:-1
position: 1304180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1304300:-1
position: 1304300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:1302994-1303231:-1:exon

position:1302994:-1
position: 1302994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1303231:-1
position: 1303231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:1301800-1301993:-1:exon

position:1301800:-1
position: 1301800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1301993:-1
position: 1301993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:1301035-1301190:-1:exon

position:1301035:-1
position: 1301035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1301190:-1
position: 1301190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:1300723-1300829:-1:exon

position:1300723:-1
position: 1300723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1300829:-1
position: 1300829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:1300365-1300475:-1:exon

position:1300365:-1
position: 1300365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1300475:-1
position: 1300475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:1300087-1300263:-1:exon

position:1300087:-1
position: 1300087
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1300263:-1
position: 1300263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 35
SIO_000628: feature:1299061-1299300:-1:exon

position:1299061:-1
position: 1299061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1299300:-1
position: 1299300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 36
SIO_000628: feature:1298773-1298856:-1:exon

position:1298773:-1
position: 1298773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1298856:-1
position: 1298856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 37
SIO_000628: feature:1296766-1297286:-1:exon

position:1296766:-1
position: 1296766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1297286:-1
position: 1297286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 38
SIO_000628: feature:1294910-1295685:-1:exon

position:1294910:-1
position: 1294910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1295685:-1
position: 1295685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 39
SIO_000628: feature:1293635-1293833:-1:exon

position:1293635:-1
position: 1293635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1293833:-1
position: 1293833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 40
SIO_000628: feature:1292551-1292711:-1:exon

position:1292551:-1
position: 1292551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1292711:-1
position: 1292711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 41
SIO_000628: feature:1291748-1291864:-1:exon

position:1291748:-1
position: 1291748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1291864:-1
position: 1291864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 42
SIO_000628: feature:1291331-1291562:-1:exon

position:1291331:-1
position: 1291331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1291562:-1
position: 1291562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 43
SIO_000628: feature:1290039-1290163:-1:exon

position:1290039:-1
position: 1290039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1290163:-1
position: 1290163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 44
SIO_000628: feature:1289220-1289440:-1:exon

position:1289220:-1
position: 1289220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1289440:-1
position: 1289440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 45
SIO_000628: feature:1287743-1288011:-1:exon

position:1287743:-1
position: 1287743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1288011:-1
position: 1288011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 46
SIO_000628: feature:1287171-1287223:-1:exon

position:1287171:-1
position: 1287171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1287223:-1
position: 1287223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 47
SIO_000628: feature:1285711-1285911:-1:exon

position:1285711:-1
position: 1285711
reference: sequence
type: ReverseStrandPosition
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position:1285911:-1
position: 1285911
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 48
SIO_000628: feature:1284951-1285125:-1:exon

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position: 1284951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1285125:-1
position: 1285125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 49
SIO_000628: feature:1283972-1284242:-1:exon

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position: 1283972
reference: sequence
type: ReverseStrandPosition
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position:1284242:-1
position: 1284242
reference: sequence
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urn:…
SIO_000300: 50
SIO_000628: feature:1283297-1283510:-1:exon

position:1283297:-1
position: 1283297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1283510:-1
position: 1283510
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 51
SIO_000628: feature:1282351-1282607:-1:exon

position:1282351:-1
position: 1282351
reference: sequence
type: ReverseStrandPosition
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position:1282607:-1
position: 1282607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 52
SIO_000628: feature:1280771-1280898:-1:exon

position:1280771:-1
position: 1280771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1280898:-1
position: 1280898
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 53
SIO_000628: feature:1278877-1279004:-1:exon

position:1278877:-1
position: 1278877
reference: sequence
type: ReverseStrandPosition
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position:1279004:-1
position: 1279004
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 54
SIO_000628: feature:1277443-1277643:-1:exon

position:1277443:-1
position: 1277443
reference: sequence
type: ReverseStrandPosition
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position:1277643:-1
position: 1277643
reference: sequence
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urn:…
SIO_000300: 55
SIO_000628: feature:1276066-1276196:-1:exon

position:1276066:-1
position: 1276066
reference: sequence
type: ReverseStrandPosition
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position:1276196:-1
position: 1276196
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 56
SIO_000628: feature:1275182-1275381:-1:exon

position:1275182:-1
position: 1275182
reference: sequence
type: ReverseStrandPosition
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position:1275381:-1
position: 1275381
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 57
SIO_000628: feature:1273776-1273890:-1:exon

position:1273776:-1
position: 1273776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1273890:-1
position: 1273890
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 58
SIO_000628: feature:1273086-1273232:-1:exon

position:1273086:-1
position: 1273086
reference: sequence
type: ReverseStrandPosition
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position:1273232:-1
position: 1273232
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 59
SIO_000628: feature:1272464-1272565:-1:exon

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position: 1272464
reference: sequence
type: ReverseStrandPosition
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position:1272565:-1
position: 1272565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 60
SIO_000628: feature:1271287-1271460:-1:exon

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position: 1271287
reference: sequence
type: ReverseStrandPosition
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position:1271460:-1
position: 1271460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 61
SIO_000628: feature:1270695-1270988:-1:exon

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position: 1270695
reference: sequence
type: ReverseStrandPosition
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position:1270988:-1
position: 1270988
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 62
SIO_000628: feature:1269915-1269980:-1:exon

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position: 1269915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1269980:-1
position: 1269980
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 63
SIO_000628: feature:1269687-1269812:-1:exon

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position: 1269687
reference: sequence
type: ReverseStrandPosition
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position:1269812:-1
position: 1269812
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 64
SIO_000628: feature:1268934-1269072:-1:exon

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position: 1268934
reference: sequence
type: ReverseStrandPosition
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position: 1269072
reference: sequence
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urn:…
SIO_000300: 65
SIO_000628: feature:1268316-1268497:-1:exon

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position: 1268316
reference: sequence
type: ReverseStrandPosition
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position:1268497:-1
position: 1268497
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 66
SIO_000628: feature:1267416-1267571:-1:exon

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position: 1267416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1267571:-1
position: 1267571
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 67
SIO_000628: feature:1266793-1266915:-1:exon

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position: 1266793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1266915:-1
position: 1266915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 68
SIO_000628: feature:1266204-1266306:-1:exon

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position: 1266204
reference: sequence
type: ReverseStrandPosition
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position:1266306:-1
position: 1266306
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 69
SIO_000628: feature:1265346-1265515:-1:exon

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position: 1265346
reference: sequence
type: ReverseStrandPosition
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position:1265515:-1
position: 1265515
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 70
SIO_000628: feature:1263278-1263416:-1:exon

position:1263278:-1
position: 1263278
reference: sequence
type: ReverseStrandPosition
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position:1263416:-1
position: 1263416
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 71
SIO_000628: feature:1262820-1262989:-1:exon

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position: 1262820
reference: sequence
type: ReverseStrandPosition
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position:1262989:-1
position: 1262989
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 72
SIO_000628: feature:1262278-1262447:-1:exon

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position: 1262278
reference: sequence
type: ReverseStrandPosition
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position:1262447:-1
position: 1262447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 73
SIO_000628: feature:1261959-1262124:-1:exon

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position: 1261959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1262124:-1
position: 1262124
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 74
SIO_000628: feature:1261396-1261472:-1:exon

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position: 1261396
reference: sequence
type: ReverseStrandPosition
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position:1261472:-1
position: 1261472
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 75
SIO_000628: feature:1260733-1260985:-1:exon

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position: 1260733
reference: sequence
type: ReverseStrandPosition
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position:1260985:-1
position: 1260985
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 76
SIO_000628: feature:1260333-1260485:-1:exon

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position: 1260333
reference: sequence
type: ReverseStrandPosition
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position:1260485:-1
position: 1260485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 77
SIO_000628: feature:1259038-1259343:-1:exon

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position: 1259038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1259343:-1
position: 1259343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 78
SIO_000628: feature:1257389-1258058:-1:exon

position:1258058:-1
position: 1258058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HERC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: HERC1
product: HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 65 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030456960.1
SIO_010081: HERC1
subclass of: SO_0000673
so part of: HERC1
location: complement(join(1257389..1258058,1259038..1259343,1260333..1260485,1260733..1260985,1261396..1261472,1261959..1262124,1262278..1262447,1262820..1262989,1263278..1263416,1265346..1265515,1266204..1266306,1266793..1266915,1267416..1267571,1268316..1268497,1268934..1269072,1269687..1269812,1269915..1269980,1270695..1270988,1271287..1271460,1272464..1272565,1273086..1273232,1273776..1273890,1275182..1275381,1276066..1276196,1277443..1277643,1278877..1279004,1280771..1280898,1282351..1282607,1283297..1283510,1283972..1284242,1284951..1285125,1285711..1285911,1287171..1287223,1287743..1288011,1289220..1289440,1290039..1290163,1291331..1291562,1291748..1291864,1292551..1292711,1293635..1293833,1294910..1295685,1296766..1297286,1298773..1298856,1299061..1299300,1300087..1300263,1300365..1300475,1300723..1300829,1301035..1301190,1301800..1301993,1302994..1303231,1304180..1304300,1304386..1304601,1304906..1305180,1313195..1313246,1313537..1313657,1314960..1315242,1317247..1317418,1318597..1318717,1318815..1318929,1319457..1319630,1320486..1320707,1321817..1322008,1322487..1322619,1322783..1322935,1324020..1324241,1325373..1325498,1326062..1326227,1327438..1327572,1328649..1328820,1328919..1329063,1329674..1329801,1331041..1331184,1333149..1333245,1333924..1334235,1336467..1336661,1336969..1337064,1338376..1339333,1357195..1357343))
location: region:1257389-1357343:-1
so has part: feature:1357195-1357343:-1:exon
so has part: feature:1338376-1339333:-1:exon
so has part: feature:1336969-1337064:-1:exon
so has part: feature:1336467-1336661:-1:exon
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so has part: feature:1333149-1333245:-1:exon
so has part: feature:1331041-1331184:-1:exon
so has part: feature:1329674-1329801:-1:exon
so has part: feature:1328919-1329063:-1:exon
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so has part: feature:1327438-1327572:-1:exon
so has part: feature:1326062-1326227:-1:exon
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so has part: feature:1313537-1313657:-1:exon
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so has part: feature:1304906-1305180:-1:exon
so has part: feature:1304386-1304601:-1:exon
so has part: feature:1304180-1304300:-1:exon
so has part: feature:1302994-1303231:-1:exon
so has part: feature:1301800-1301993:-1:exon
so has part: feature:1301035-1301190:-1:exon
so has part: feature:1300723-1300829:-1:exon
so has part: feature:1300365-1300475:-1:exon
so has part: feature:1300087-1300263:-1:exon
so has part: feature:1299061-1299300:-1:exon
so has part: feature:1298773-1298856:-1:exon
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so has part: feature:1287743-1288011:-1:exon
so has part: feature:1287171-1287223:-1:exon
so has part: feature:1285711-1285911:-1:exon
so has part: feature:1284951-1285125:-1:exon
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so has part: feature:1283297-1283510:-1:exon
so has part: feature:1282351-1282607:-1:exon
so has part: feature:1280771-1280898:-1:exon
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so has part: feature:1277443-1277643:-1:exon
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so has part: feature:1275182-1275381:-1:exon
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so has part: feature:1273086-1273232:-1:exon
so has part: feature:1272464-1272565:-1:exon
so has part: feature:1271287-1271460:-1:exon
so has part: feature:1270695-1270988:-1:exon
so has part: feature:1269915-1269980:-1:exon
so has part: feature:1269687-1269812:-1:exon
so has part: feature:1268934-1269072:-1:exon
so has part: feature:1268316-1268497:-1:exon
so has part: feature:1267416-1267571:-1:exon
so has part: feature:1266793-1266915:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1357195-1357343:-1:exon

position:1357195:-1
position: 1357195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1338376-1339333:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1336969-1337064:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1336467-1336661:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1333924-1334235:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1333149-1333245:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1331041-1331184:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1329674-1329801:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1328919-1329063:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1328649-1328820:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1327438-1327572:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1326062-1326227:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1325373-1325498:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1324020-1324241:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1322783-1322935:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1322487-1322619:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1321817-1322008:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1320486-1320707:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1319457-1319630:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1318815-1318929:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1318597-1318717:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1317247-1317418:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1314960-1315242:-1:exon

position:1315242:-1
position: 1315242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:1313537-1313657:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1313195-1313246:-1:exon

urn:…
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SIO_000628: feature:1304906-1305180:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1304386-1304601:-1:exon

urn:…
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SIO_000628: feature:1304180-1304300:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:1302994-1303231:-1:exon

urn:…
SIO_000300: 30
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urn:…
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urn:…
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urn:…
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SIO_000628: feature:1300365-1300475:-1:exon

urn:…
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urn:…
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urn:…
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urn:…
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urn:…
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urn:…
SIO_000300: 39
SIO_000628: feature:1293635-1293833:-1:exon

urn:…
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urn:…
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SIO_000628: feature:1291748-1291864:-1:exon

urn:…
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SIO_000628: feature:1291331-1291562:-1:exon

urn:…
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SIO_000628: feature:1290039-1290163:-1:exon

urn:…
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SIO_000628: feature:1289220-1289440:-1:exon

urn:…
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urn:…
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urn:…
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urn:…
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SIO_000628: feature:1283972-1284242:-1:exon

urn:…
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SIO_000628: feature:1283297-1283510:-1:exon

urn:…
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SIO_000628: feature:1282351-1282607:-1:exon

urn:…
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SIO_000628: feature:1280771-1280898:-1:exon

urn:…
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urn:…
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SIO_000628: feature:1277443-1277643:-1:exon

urn:…
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urn:…
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SIO_000628: feature:1275182-1275381:-1:exon

urn:…
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SIO_000628: feature:1273776-1273890:-1:exon

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urn:…
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urn:…
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urn:…
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SIO_000628: feature:1270695-1270988:-1:exon

urn:…
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urn:…
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SIO_000628: feature:1269687-1269812:-1:exon

urn:…
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SIO_000628: feature:1268316-1268497:-1:exon

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urn:…
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urn:…
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SIO_000628: feature:1262820-1262989:-1:exon

urn:…
SIO_000300: 72
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HERC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: HERC1
product: HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 66 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030456959.1
SIO_010081: HERC1
subclass of: SO_0000673
so part of: HERC1
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location: region:1257389-1357343:-1
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position:1295661:-1
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reference: sequence
type: ReverseStrandPosition
type: ExactPosition

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HERC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: HERC1
product: HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 65 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030456957.1
SIO_010081: HERC1
subclass of: SO_0000673
so part of: HERC1
location: complement(join(1257389..1258058,1259038..1259343,1260333..1260485,1260733..1260985,1261396..1261472,1261959..1262124,1262278..1262447,1262820..1262989,1263278..1263416,1265346..1265515,1266204..1266306,1266793..1266915,1267416..1267571,1268316..1268497,1268934..1269072,1269687..1269812,1269915..1269980,1270695..1270988,1271287..1271460,1272464..1272565,1273086..1273232,1273776..1273890,1275182..1275381,1276066..1276196,1277443..1277643,1278877..1279004,1280771..1280898,1282351..1282607,1283297..1283510,1283972..1284242,1284951..1285125,1285711..1285911,1287171..1287223,1287743..1288011,1289241..1289440,1290039..1290163,1291331..1291562,1291748..1291864,1292551..1292711,1293635..1293833,1294910..1295685,1296766..1297286,1298773..1298856,1299061..1299300,1300087..1300263,1300365..1300475,1300723..1300829,1301035..1301190,1301800..1301993,1302994..1303231,1304180..1304300,1304386..1304601,1304906..1305180,1313195..1313246,1313537..1313657,1314960..1315266,1317247..1317418,1318597..1318717,1318815..1318929,1319457..1319630,1320486..1320707,1321817..1322008,1322487..1322619,1322783..1322935,1324020..1324241,1325373..1325498,1326062..1326227,1327438..1327572,1328649..1328820,1328919..1329063,1329674..1329801,1331041..1331184,1333149..1333245,1333924..1334235,1336467..1336661,1336969..1337064,1338376..1339333,1357195..1357343))
location: region:1257389-1357343:-1
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position:1289241:-1
position: 1289241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

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HERC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: HERC1
product: HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 65 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_030456955.1
SIO_010081: HERC1
subclass of: SO_0000673
so part of: HERC1
location: complement(join(1257389..1258058,1259038..1259343,1260333..1260485,1260733..1260985,1261396..1261472,1261959..1262124,1262278..1262447,1262820..1262989,1263278..1263416,1265346..1265515,1266204..1266306,1266793..1266915,1267416..1267571,1268316..1268497,1268934..1269072,1269687..1269812,1269915..1269980,1270695..1270988,1271287..1271460,1272464..1272565,1273086..1273232,1273776..1273890,1275182..1275381,1276066..1276196,1277443..1277643,1278877..1279004,1280771..1280898,1282351..1282607,1283297..1283510,1283972..1284242,1284951..1285125,1285711..1285911,1287171..1287223,1287743..1288011,1289220..1289440,1290039..1290163,1291331..1291562,1291748..1291864,1292551..1292711,1293635..1293833,1294910..1295685,1296766..1297286,1298773..1298856,1299061..1299300,1300087..1300263,1300365..1300475,1300723..1300829,1301035..1301190,1301800..1301993,1302994..1303231,1304180..1304300,1304386..1304601,1304906..1305180,1313195..1313246,1313537..1313657,1314960..1315266,1317247..1317418,1318597..1318717,1318815..1318929,1319457..1319630,1320486..1320707,1321817..1322008,1322487..1322619,1322783..1322935,1324020..1324241,1325373..1325498,1326062..1326227,1327438..1327572,1328649..1328820,1328919..1329063,1329674..1329801,1331041..1331184,1333149..1333245,1333924..1334235,1336467..1336661,1336969..1337064,1338376..1339333,1357195..1357343))
location: region:1257389-1357343:-1
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HERC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9244
gene: HERC1
product: HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 61 ESTs, 2 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_030456962.1
SIO_010081: HERC1
subclass of: SO_0000673
so part of: HERC1
location: complement(join(1257400..1258058,1259038..1259343,1260333..1260485,1260733..1260985,1261396..1261472,1261959..1262124,1262278..1262447,1262820..1262989,1263278..1263416,1265346..1265515,1266204..1266306,1266793..1266915,1267416..1267571,1268316..1268497,1268934..1269072,1269687..1269812,1269915..1269980,1270695..1270988,1271287..1271460,1272464..1272565,1273086..1273232,1273776..1273890,1275182..1275381,1276066..1276196,1277443..1277643,1278877..1279004,1280771..1280898,1282351..1282556,1283297..1283510,1283972..1284242,1284951..1285125,1285711..1285911,1287171..1287223,1287743..1288011,1289220..1289440,1290039..1290163,1291331..1291562,1291748..1291864,1292551..1292711,1293635..1293833,1294910..1295661,1296766..1297286,1298773..1298856,1299061..1299300,1300087..1300263,1300365..1300475,1300723..1300829,1301035..1301190,1301800..1301993,1302994..1303231,1304180..1304300,1304386..1304601,1304906..1305180,1313195..1313246,1313537..1313657,1314960..1315266,1317247..1317418,1318597..1318717,1318815..1318929,1319457..1319630,1320486..1320707,1321817..1322008,1322487..1322619,1322783..1322935,1324020..1324241,1325373..1325498,1326062..1326227,1327438..1327572,1328649..1328820,1328919..1329063,1329674..1329801,1331041..1331184,1333149..1333245,1333924..1334235,1336467..1336661,1336969..1337064,1338376..1339333,1357195..1357343))
location: region:1257400-1357343:-1
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