Acidithiobacillus ferrooxidans strain YNTRS-40 plasmid p1, complete sequence.
Bacteria; Pseudomonadota; Acidithiobacillia; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.
Complete genome sequence of Acidithiobacillus ferrooxidans YNTRS-40
Submitted (18-MAY-2019) College of Life Science and Technology, Heilongjiang Bayi Agricultural University, Xinfeng Road 5, Daqing 163319, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP040512.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 31-MAR-2019\nAssembly Method :: CANU v. 1.7.11\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 152.25x\nSequencing Technology :: Oxford Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/08/2022 06:05:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,329\nCDSs (total) :: 3,272\nGenes (coding) :: 3,186\nCDSs (with protein) :: 3,186\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 4\nPseudo Genes (total) :: 86\nCDSs (without protein) :: 86\nPseudo Genes (ambiguous residues) :: 0 of 86\nPseudo Genes (frameshifted) :: 46 of 86\nPseudo Genes (incomplete) :: 50 of 86\nPseudo Genes (internal stop) :: 7 of 86\nPseudo Genes (multiple problems) :: 15 of 86\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF015354.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004668272.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030532.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_054608956.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
ISL3-like element ISTfe1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_009565967.1
COORDINATES: protein motif:HMM:NF012354.2
COORDINATES: similar to AA sequence:RefSeq:WP_012606673.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012536402.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012536401.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009564313.1
GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014029439.1
COORDINATES: similar to AA sequence:RefSeq:WP_014029440.1
COORDINATES: similar to AA sequence:RefSeq:WP_014029441.1
COORDINATES: similar to AA sequence:RefSeq:WP_018871202.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013106747.1
COORDINATES: similar to AA sequence:RefSeq:WP_004872028.1
COORDINATES: similar to AA sequence:RefSeq:WP_012696126.1
COORDINATES: similar to AA sequence:RefSeq:WP_014029819.1
heterodisulfide reductase-related iron-sulfur binding cluster
COORDINATES: similar to AA sequence:RefSeq:WP_008475650.1
COORDINATES: similar to AA sequence:RefSeq:WP_007507729.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012536800.1
DNA-3-methyladenine glycosylase 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009206761.1
COORDINATES: similar to AA sequence:RefSeq:WP_012536798.1
COORDINATES: protein motif:HMM:NF020873.2
COORDINATES: similar to AA sequence:RefSeq:WP_014029164.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012607001.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012606669.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014028048.1
COORDINATES: similar to AA sequence:RefSeq:WP_014028049.1
COORDINATES: similar to AA sequence:RefSeq:WP_009567322.1
COORDINATES: protein motif:HMM:NF013752.2
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003159185.1
COORDINATES: protein motif:HMM:NF012464.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_010637499.1
COORDINATES: similar to AA sequence:RefSeq:WP_054608914.1
IS30-like element IST3091 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012987826.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010640806.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF019976.2
nuclease-related domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007801706.1
COORDINATES: similar to AA sequence:RefSeq:WP_013953463.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: protein motif:HMM:NF036629.2
COORDINATES: protein motif:HMM:NF014845.2
COORDINATES: similar to AA sequence:RefSeq:WP_020227806.1
COORDINATES: protein motif:HMM:NF017243.2
COORDINATES: protein motif:HMM:NF018152.2