Catharus ustulatus isolate bCatUst1 chromosome 31, bCatUst1.pri.v2, whole genome shotgun sequence.
type: Entry
definition: Catharus ustulatus isolate bCatUst1 chromosome 31, bCatUst1.pri.v2, whole genome shotgun sequence.
sequence version: NC_046251.1
sequence date: 2021-07-28
sequence: sequence
division: CON
label: NC_046251.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA613294
dblink: SAMN12618602
keyword: WGS
keyword: RefSeq
source: Catharus ustulatus (Swainson's thrush)
organism: Catharus ustulatus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Turdidae; Catharus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM020366.1.\nAssembly name: bCatUst1.pri.v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2020/12/22. The original whole-genome shotgun project has the\naccession WNMQ00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 06-AUG-2020\nAssembly Method :: FALCON v. DX 1.9.0; FALCON-Unzip v.\n 6.0.0.47841; purge_dups github v.\n purge_haplotig (bitbucket v1.0.3+\n 1.Nov.2018); Scaff10x v. 2; Bionano Solve\n v. 3.2.1_04122018; Salsa2 HiC v. 2.2;\n Arrow polishing and gap filling v.\n Smrtlink_6.0.0.47841; Longranger Align v.\n 2.2.2; freebayes v. 1.3.1; gEVAL manual\n curation v. 2020-08-06; VGP assembly\n pipeline v. 1.5\nAssembly Name :: bCatUst1.pri.v2\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 60.58x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Catharus ustulatus Annotation\n Release 101\nAnnotation Version :: 101\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 3655338
topology: linear
so has quality: SO_0000987
location: 1..3655338
location: region:1-3655338:1
RO_0002162: 91951

NC_046251
type: RefSeq
SIO_000068: refseq

PRJNA613294
type: BioProject
SIO_000068: bioproject

SAMN12618602
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3655338:1
position: 3655338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-3655338:1:source
so part of: sequence
organism: Catharus ustulatus
mol type: genomic DNA
isolate: bCatUst1
chromosome: 31
sex: female
tissue type: blood
dev stage: adult
country: Canada: Kamloops
lat lon: 50.67613 N 120.33787 W
collection date: 15-Jul-2018
collected by: Kira Delmore

91951
type: Taxonomy
SIO_000068: taxonomy

LOC117009125
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: LOC117009125
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 7..1738
location: region:7-1738:1
so has part: feature:7-1738:1:exon
subclass of: SO_0000010

117009125
type: Gene
SIO_000068: ncbigene

position:7:1
position: 7
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1738:1
position: 1738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7-1738:1:exon

LOC117009125
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 91951
gene: LOC117009125
product: pectinesterase inhibitor 10-like, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_004420427.1
SIO_010081: LOC117009125
so part of: LOC117009125
location: join(7..275,374..416,502..553,628..1030,1556..1738)
location: region:7-1738:1
so has part: feature:7-275:1:exon
so has part: feature:374-416:1:exon
so has part: feature:502-553:1:exon
so has part: feature:628-1030:1:exon
so has part: feature:1556-1738:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7-275:1:exon

position:275:1
position: 275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:374-416:1:exon

position:374:1
position: 374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:416:1
position: 416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:502-553:1:exon

position:502:1
position: 502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:553:1
position: 553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:628-1030:1:exon

position:628:1
position: 628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1030:1
position: 1030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1556-1738:1:exon

position:1556:1
position: 1556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117009125
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: LOC117009125
product: pectinesterase inhibitor 10-like, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083333.1
SIO_010081: LOC117009125
subclass of: SO_0000673
so part of: LOC117009125
location: join(7..275,374..416,502..553,628..676,999..1738)
location: region:7-1738:1
so has part: feature:7-275:1:exon
so has part: feature:374-416:1:exon
so has part: feature:502-553:1:exon
so has part: feature:628-676:1:exon
so has part: feature:999-1738:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7-275:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:374-416:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:502-553:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:628-676:1:exon

position:676:1
position: 676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:999-1738:1:exon

position:999:1
position: 999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117009125
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: LOC117009125
product: pectinesterase inhibitor 10-like, transcript variant X4
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083334.1
SIO_010081: LOC117009125
subclass of: SO_0000673
so part of: LOC117009125
location: join(7..275,374..416,502..553,628..676,999..1030,1556..1738)
location: region:7-1738:1
so has part: feature:7-275:1:exon
so has part: feature:374-416:1:exon
so has part: feature:502-553:1:exon
so has part: feature:628-676:1:exon
so has part: feature:999-1030:1:exon
so has part: feature:1556-1738:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7-275:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:374-416:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:502-553:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:628-676:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:999-1030:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1556-1738:1:exon

LOC117009125
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: LOC117009125
product: pectinesterase inhibitor 10-like, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083332.1
SIO_010081: LOC117009125
subclass of: SO_0000673
so part of: LOC117009125
location: join(7..275,374..416,502..553,628..676,1556..1738)
location: region:7-1738:1
so has part: feature:7-275:1:exon
so has part: feature:374-416:1:exon
so has part: feature:502-553:1:exon
so has part: feature:628-676:1:exon
so has part: feature:1556-1738:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7-275:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:374-416:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:502-553:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:628-676:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1556-1738:1:exon

LOC117009125
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: LOC117009125
product: pectinesterase inhibitor 10-like, transcript variant X5
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083336.1
SIO_010081: LOC117009125
subclass of: SO_0000673
so part of: LOC117009125
location: join(36..81,212..275,374..416,502..553,628..676,1556..1738)
location: region:36-1738:1
so has part: feature:36-81:1:exon
so has part: feature:212-275:1:exon
so has part: feature:374-416:1:exon
so has part: feature:502-553:1:exon
so has part: feature:628-676:1:exon
so has part: feature:1556-1738:1:exon

position:36:1
position: 36
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36-81:1:exon

position:81:1
position: 81
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:212-275:1:exon

position:212:1
position: 212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:374-416:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:502-553:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:628-676:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1556-1738:1:exon

LOC117009125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: LOC117009125
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC117009125 isoform X1
translation: MQSCAACRWPRKSPFPGPQTGPQSPPTSSLIPQTVPTNFPSPKTALQISPQLSPGWRWSSHSSTPHPSPTQSVTAQPRRQLSSQVVSRLSSLEPPWSRSTPGWQVGVAYRDSGTPLASSMGFCSAAGEGLALPVGSQSTAIKDKQGPLKGSEAPAPGAPGLPWRWLGAEVKNN
SIO_010081: LOC117009125
subclass of: SO_0000673
so part of: LOC117009125
location: join(59..275,374..416,502..553,628..676,1556..1716)
location: region:59-1716:1
so has part: feature:59-275:1:exon
so has part: feature:374-416:1:exon
so has part: feature:502-553:1:exon
so has part: feature:628-676:1:exon
so has part: feature:1556-1716:1:exon

XP_032939223.1
type: Protein
SIO_000068: ncbiprotein

position:59:1
position: 59
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1716:1
position: 1716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59-275:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:374-416:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:502-553:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:628-676:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1556-1716:1:exon

LOC117009125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: LOC117009125
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pectinesterase inhibitor 10-like isoform X3
translation: MQSCAACRWPRKSPFPGPQTGPQSPPTSSLIPQTVPTNFPSPKTALQISPQLSPGWRWSSHSSTPHPSPTQSVTAQPRRQLSSQVVSRLSSLEPPWSRSTPGWQVGVAYRDSGTPLASSMVTPQAGTSEGQGSALRLARDWRSQWDPSPRP
SIO_010081: LOC117009125
subclass of: SO_0000673
so part of: LOC117009125
location: join(59..275,374..416,502..553,628..676,999..1030,1556..1618)
location: region:59-1618:1
so has part: feature:59-275:1:exon
so has part: feature:374-416:1:exon
so has part: feature:502-553:1:exon
so has part: feature:628-676:1:exon
so has part: feature:999-1030:1:exon
so has part: feature:1556-1618:1:exon

XP_032939225.1
type: Protein
SIO_000068: ncbiprotein

position:1618:1
position: 1618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59-275:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:374-416:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:502-553:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:628-676:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:999-1030:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1556-1618:1:exon

LOC117009125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: LOC117009125
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC117009125 isoform X2
translation: MQSCAACRWPRKSPFPGPQTGPQSPPTSSLIPQTVPTNFPSPKTALQISPQLSPGWRWSSHSSTPHPSPTQSVTAQPRRQLSSQVVSRLSSLEPPWSRSTPGWQVGVAYRDSGTPLASSMVTPQAGTSEGQVLGQWEGLGGTGVLGINERRGEEDLGGLG
SIO_010081: LOC117009125
subclass of: SO_0000673
so part of: LOC117009125
location: join(59..275,374..416,502..553,628..676,999..1120)
location: region:59-1120:1
so has part: feature:59-275:1:exon
so has part: feature:374-416:1:exon
so has part: feature:502-553:1:exon
so has part: feature:628-676:1:exon
so has part: feature:999-1120:1:exon

XP_032939224.1
type: Protein
SIO_000068: ncbiprotein

position:1120:1
position: 1120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59-275:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:374-416:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:502-553:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:628-676:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:999-1120:1:exon

LOC117009125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: LOC117009125
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC117009125 isoform X4
translation: MQLSPGWRWSSHSSTPHPSPTQSVTAQPRRQLSSQVVSRLSSLEPPWSRSTPGWQVGVAYRDSGTPLASSMGFCSAAGEGLALPVGSQSTAIKDKQGPLKGSEAPAPGAPGLPWRWLGAEVKNN
SIO_010081: LOC117009125
subclass of: SO_0000673
so part of: LOC117009125
location: join(76..81,212..275,374..416,502..553,628..676,1556..1716)
location: region:76-1716:1
so has part: feature:76-81:1:exon
so has part: feature:212-275:1:exon
so has part: feature:374-416:1:exon
so has part: feature:502-553:1:exon
so has part: feature:628-676:1:exon
so has part: feature:1556-1716:1:exon

XP_032939227.1
type: Protein
SIO_000068: ncbiprotein

position:76:1
position: 76
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:76-81:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:212-275:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:374-416:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:502-553:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:628-676:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1556-1716:1:exon

ASB8
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: ASB8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2133..4726
location: region:2133-4726:1
so has part: feature:2133-4726:1:exon
subclass of: SO_0000010

117009116
type: Gene
SIO_000068: ncbigene

position:2133:1
position: 2133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4726:1
position: 4726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2133-4726:1:exon

ASB8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: ASB8
product: ankyrin repeat and SOCS box containing 8, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083316.2
SIO_010081: ASB8
subclass of: SO_0000673
so part of: ASB8
location: join(2133..2508,3029..3133,3812..4726)
location: region:2133-4726:1
so has part: feature:2133-2508:1:exon
so has part: feature:3029-3133:1:exon
so has part: feature:3812-4726:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2133-2508:1:exon

position:2508:1
position: 2508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3029-3133:1:exon

position:3029:1
position: 3029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3133:1
position: 3133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3812-4726:1:exon

position:3812:1
position: 3812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ASB8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: ASB8
product: ankyrin repeat and SOCS box containing 8, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083318.1
SIO_010081: ASB8
subclass of: SO_0000673
so part of: ASB8
location: join(2370..2512,2989..3133,3812..4726)
location: region:2370-4726:1
so has part: feature:2370-2512:1:exon
so has part: feature:2989-3133:1:exon
so has part: feature:3812-4726:1:exon

position:2370:1
position: 2370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2370-2512:1:exon

position:2512:1
position: 2512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2989-3133:1:exon

position:2989:1
position: 2989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3812-4726:1:exon

ASB8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: ASB8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ankyrin repeat and SOCS box protein 8 isoform X2
translation: MPRRCPRHVVHHAEHPEQVLAVRAPYPHHRRHPLLPAGQRGGSHRPGAGEFLTQGGSFTPQGADVNCLHGTLKPLHCACMVADADCVELLLQKGAEVNALDGYNRTALHYAAEKDETCVEILLEYGANPNALDGNKDTPLHWAAFKNNAECVRALLANGALVNALDYNNDTPLSWAAMKGNLESVSILLDFGAEVRVVNLKGQSPISRLVALLVRGLGTEREDSCLDLLHRATGHFELRKNGSLPWEVARDPQLCQRLTLLCSAPGTLQALSRYAVRRSLGLRFLPQAVQQLPLPACLKEYLLLLT
SIO_010081: ASB8
subclass of: SO_0000673
so part of: ASB8
location: join(2370..2512,2989..3133,3812..4444)
location: region:2370-4444:1
so has part: feature:2370-2512:1:exon
so has part: feature:2989-3133:1:exon
so has part: feature:3812-4444:1:exon

XP_032939209.1
type: Protein
SIO_000068: ncbiprotein

position:4444:1
position: 4444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2370-2512:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2989-3133:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3812-4444:1:exon

ASB8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: ASB8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ankyrin repeat and SOCS box protein 8 isoform X1
translation: MWYIMQSIQSKYSLSERLIRTIAAIRSFPRDNVEDLIGRGADVNCLHGTLKPLHCACMVADADCVELLLQKGAEVNALDGYNRTALHYAAEKDETCVEILLEYGANPNALDGNKDTPLHWAAFKNNAECVRALLANGALVNALDYNNDTPLSWAAMKGNLESVSILLDFGAEVRVVNLKGQSPISRLVALLVRGLGTEREDSCLDLLHRATGHFELRKNGSLPWEVARDPQLCQRLTLLCSAPGTLQALSRYAVRRSLGLRFLPQAVQQLPLPACLKEYLLLLT
SIO_010081: ASB8
subclass of: SO_0000673
so part of: ASB8
location: join(2392..2508,3029..3133,3812..4444)
location: region:2392-4444:1
so has part: feature:2392-2508:1:exon
so has part: feature:3029-3133:1:exon
so has part: feature:3812-4444:1:exon

XP_032939207.1
type: Protein
SIO_000068: ncbiprotein

position:2392:1
position: 2392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2392-2508:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3029-3133:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3812-4444:1:exon

PFKM
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: PFKM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4769..14367)
location: region:4769-14367:-1
so has part: feature:4769-14367:-1:exon
subclass of: SO_0000010

117009114
type: Gene
SIO_000068: ncbigene

position:4769:-1
position: 4769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14367:-1
position: 14367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4769-14367:-1:exon

PFKM
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: PFKM
product: phosphofructokinase, muscle, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083312.2
SIO_010081: PFKM
subclass of: SO_0000673
so part of: PFKM
location: complement(join(4769..5613,5711..5816,6147..6246,6349..6460,6565..6626,6718..6882,7258..7410,7604..7691,7768..7838,8477..8623,8753..8816,8898..8962,9189..9314,9405..9497,9607..9702,9818..9926,10014..10058,10135..10300,10932..11121,11392..11469,11561..11634,12454..12552,13974..14367))
location: region:4769-14367:-1
so has part: feature:13974-14367:-1:exon
so has part: feature:12454-12552:-1:exon
so has part: feature:11561-11634:-1:exon
so has part: feature:11392-11469:-1:exon
so has part: feature:10932-11121:-1:exon
so has part: feature:10135-10300:-1:exon
so has part: feature:10014-10058:-1:exon
so has part: feature:9818-9926:-1:exon
so has part: feature:9607-9702:-1:exon
so has part: feature:9405-9497:-1:exon
so has part: feature:9189-9314:-1:exon
so has part: feature:8898-8962:-1:exon
so has part: feature:8753-8816:-1:exon
so has part: feature:8477-8623:-1:exon
so has part: feature:7768-7838:-1:exon
so has part: feature:7604-7691:-1:exon
so has part: feature:7258-7410:-1:exon
so has part: feature:6718-6882:-1:exon
so has part: feature:6565-6626:-1:exon
so has part: feature:6349-6460:-1:exon
so has part: feature:6147-6246:-1:exon
so has part: feature:5711-5816:-1:exon
so has part: feature:4769-5613:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13974-14367:-1:exon

position:13974:-1
position: 13974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:12454-12552:-1:exon

position:12454:-1
position: 12454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12552:-1
position: 12552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11561-11634:-1:exon

position:11561:-1
position: 11561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11634:-1
position: 11634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:11392-11469:-1:exon

position:11392:-1
position: 11392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11469:-1
position: 11469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:10932-11121:-1:exon

position:10932:-1
position: 10932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11121:-1
position: 11121
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:10135-10300:-1:exon

position:10135:-1
position: 10135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10300:-1
position: 10300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:10014-10058:-1:exon

position:10014:-1
position: 10014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10058:-1
position: 10058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:9818-9926:-1:exon

position:9818:-1
position: 9818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9926:-1
position: 9926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:9607-9702:-1:exon

position:9607:-1
position: 9607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9702:-1
position: 9702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:9405-9497:-1:exon

position:9405:-1
position: 9405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9497:-1
position: 9497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:9189-9314:-1:exon

position:9189:-1
position: 9189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9314:-1
position: 9314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:8898-8962:-1:exon

position:8898:-1
position: 8898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8962:-1
position: 8962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:8753-8816:-1:exon

position:8753:-1
position: 8753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8816:-1
position: 8816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:8477-8623:-1:exon

position:8477:-1
position: 8477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8623:-1
position: 8623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:7768-7838:-1:exon

position:7768:-1
position: 7768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7838:-1
position: 7838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:7604-7691:-1:exon

position:7604:-1
position: 7604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7691:-1
position: 7691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:7258-7410:-1:exon

position:7258:-1
position: 7258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7410:-1
position: 7410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:6718-6882:-1:exon

position:6718:-1
position: 6718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6882:-1
position: 6882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:6565-6626:-1:exon

position:6565:-1
position: 6565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6626:-1
position: 6626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:6349-6460:-1:exon

position:6349:-1
position: 6349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6460:-1
position: 6460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:6147-6246:-1:exon

position:6147:-1
position: 6147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6246:-1
position: 6246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:5711-5816:-1:exon

position:5711:-1
position: 5711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5816:-1
position: 5816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:4769-5613:-1:exon

position:5613:-1
position: 5613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PFKM
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: PFKM
product: phosphofructokinase, muscle, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083311.2
SIO_010081: PFKM
subclass of: SO_0000673
so part of: PFKM
location: complement(join(4769..5613,5711..5816,6147..6246,6349..6460,6565..6626,6718..6882,7258..7410,7604..7691,7768..7838,8477..8623,8753..8816,8898..8962,9189..9314,9405..9497,9607..9702,9818..9926,10014..10058,10135..10300,10932..11121,11392..11469,11561..11634,12454..12552,13441..13570))
location: region:4769-13570:-1
so has part: feature:13441-13570:-1:exon
so has part: feature:12454-12552:-1:exon
so has part: feature:11561-11634:-1:exon
so has part: feature:11392-11469:-1:exon
so has part: feature:10932-11121:-1:exon
so has part: feature:10135-10300:-1:exon
so has part: feature:10014-10058:-1:exon
so has part: feature:9818-9926:-1:exon
so has part: feature:9607-9702:-1:exon
so has part: feature:9405-9497:-1:exon
so has part: feature:9189-9314:-1:exon
so has part: feature:8898-8962:-1:exon
so has part: feature:8753-8816:-1:exon
so has part: feature:8477-8623:-1:exon
so has part: feature:7768-7838:-1:exon
so has part: feature:7604-7691:-1:exon
so has part: feature:7258-7410:-1:exon
so has part: feature:6718-6882:-1:exon
so has part: feature:6565-6626:-1:exon
so has part: feature:6349-6460:-1:exon
so has part: feature:6147-6246:-1:exon
so has part: feature:5711-5816:-1:exon
so has part: feature:4769-5613:-1:exon

position:13570:-1
position: 13570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13441-13570:-1:exon

position:13441:-1
position: 13441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:12454-12552:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11561-11634:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11392-11469:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10932-11121:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10135-10300:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10014-10058:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9818-9926:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9607-9702:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:9405-9497:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:9189-9314:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:8898-8962:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:8753-8816:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:8477-8623:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:7768-7838:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:7604-7691:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:7258-7410:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6718-6882:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6565-6626:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:6349-6460:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:6147-6246:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5711-5816:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:4769-5613:-1:exon

PFKM
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: PFKM
product: phosphofructokinase, muscle, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083313.2
SIO_010081: PFKM
subclass of: SO_0000673
so part of: PFKM
location: complement(join(4769..5613,5711..5816,6147..6246,6349..6460,6565..6626,6718..6882,7258..7410,7604..7691,7768..7838,8477..8623,8753..8816,8898..8962,9189..9314,9405..9497,9607..9702,9818..9926,10014..10058,10135..10300,10932..11121,11392..11469,11561..11634,12454..12552,12985..13182))
location: region:4769-13182:-1
so has part: feature:12985-13182:-1:exon
so has part: feature:12454-12552:-1:exon
so has part: feature:11561-11634:-1:exon
so has part: feature:11392-11469:-1:exon
so has part: feature:10932-11121:-1:exon
so has part: feature:10135-10300:-1:exon
so has part: feature:10014-10058:-1:exon
so has part: feature:9818-9926:-1:exon
so has part: feature:9607-9702:-1:exon
so has part: feature:9405-9497:-1:exon
so has part: feature:9189-9314:-1:exon
so has part: feature:8898-8962:-1:exon
so has part: feature:8753-8816:-1:exon
so has part: feature:8477-8623:-1:exon
so has part: feature:7768-7838:-1:exon
so has part: feature:7604-7691:-1:exon
so has part: feature:7258-7410:-1:exon
so has part: feature:6718-6882:-1:exon
so has part: feature:6565-6626:-1:exon
so has part: feature:6349-6460:-1:exon
so has part: feature:6147-6246:-1:exon
so has part: feature:5711-5816:-1:exon
so has part: feature:4769-5613:-1:exon

position:13182:-1
position: 13182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12985-13182:-1:exon

position:12985:-1
position: 12985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:12454-12552:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11561-11634:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11392-11469:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10932-11121:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10135-10300:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10014-10058:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9818-9926:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9607-9702:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:9405-9497:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:9189-9314:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:8898-8962:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:8753-8816:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:8477-8623:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:7768-7838:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:7604-7691:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:7258-7410:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6718-6882:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6565-6626:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:6349-6460:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:6147-6246:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5711-5816:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:4769-5613:-1:exon

PFKM
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: PFKM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ATP-dependent 6-phosphofructokinase, muscle type isoform X2
translation: MMSSCRGSFCVCIPLQLLPAVDPITVDPITAEPIPVSPYGRKMSPSPVGPRHSETLGVGKAIAVLTSGGDAQGMNAAVRAVVRVGIYTGARVFYVYEGYQGLVDGGEHIKEATWESVSMMLQLGGTVIGSARCQDFRTREGRLRAARNLVKRGITNLCVIGGDGSLTGADTFRAEWGGLLADLVKTGGITAEEAQRSSHLNIVGMVGSIDNDFCGTDMTIGTDSALHRIMEIVDAITTTAQSHQRTFVLEVMGRHCGYLALITALACGADWVFIPESPPEDDWEEHLCRRLAETRDGGSRLNIIIVAEGAIDKQGKPITSDEIKALVVKRLGYDTRVTILGHVQRGGTPSAFDRILASRMGVEAVMALLEATPDTPACVVSLSGNQAVRLPLMECVQVTKDVTTAMNEGRFEDALKLRGRSFQNNWNVYKLLAHIRPPATKSGYTVAVMNVGAPAAGMNAAVRSTVRIGLIHGHRMLAVHDGFEGLAFGMVEEIGWNTVGGWTGLGGSKLGTKRTLPKKYFEEISTNISKFGIHGLIIIGGFEAFVGGLELVEGRARFEELCIPLCIVPATVSNNVPGSDFSIGADTSLNTITNTCDLIKQSAAGTKRRVFIIETMGGFCGYLATMAGLAAGADAAYIFEEPFSSRDLQANVDHLTEKMKTSVKRGLVLRNERCNENYTTDFIYNLYSEEGKGVFDCRKNVLGHMQQGGSPTPFDRNFGTKMGAKAVAWITGKIKECSRHGRIFANTADSACLLGMRKRSLMFQPITELRQQTDFEHRIPKEQWWLKLRPILKVLAKYNIELDTSETAHLEHLTRKVLVPEATV
SIO_010081: PFKM
subclass of: SO_0000673
so part of: PFKM
location: complement(join(5466..5613,5711..5816,6147..6246,6349..6460,6565..6626,6718..6882,7258..7410,7604..7691,7768..7838,8477..8623,8753..8816,8898..8962,9189..9314,9405..9497,9607..9702,9818..9926,10014..10058,10135..10300,10932..11121,11392..11469,11561..11634,12454..12552,13974..14091))
location: region:5466-14091:-1
so has part: feature:13974-14091:-1:exon
so has part: feature:12454-12552:-1:exon
so has part: feature:11561-11634:-1:exon
so has part: feature:11392-11469:-1:exon
so has part: feature:10932-11121:-1:exon
so has part: feature:10135-10300:-1:exon
so has part: feature:10014-10058:-1:exon
so has part: feature:9818-9926:-1:exon
so has part: feature:9607-9702:-1:exon
so has part: feature:9405-9497:-1:exon
so has part: feature:9189-9314:-1:exon
so has part: feature:8898-8962:-1:exon
so has part: feature:8753-8816:-1:exon
so has part: feature:8477-8623:-1:exon
so has part: feature:7768-7838:-1:exon
so has part: feature:7604-7691:-1:exon
so has part: feature:7258-7410:-1:exon
so has part: feature:6718-6882:-1:exon
so has part: feature:6565-6626:-1:exon
so has part: feature:6349-6460:-1:exon
so has part: feature:6147-6246:-1:exon
so has part: feature:5711-5816:-1:exon
so has part: feature:5466-5613:-1:exon

XP_032939203.1
type: Protein
SIO_000068: ncbiprotein

position:5466:-1
position: 5466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14091:-1
position: 14091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13974-14091:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:12454-12552:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11561-11634:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11392-11469:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10932-11121:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10135-10300:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10014-10058:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9818-9926:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9607-9702:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:9405-9497:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:9189-9314:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:8898-8962:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:8753-8816:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:8477-8623:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:7768-7838:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:7604-7691:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:7258-7410:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6718-6882:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6565-6626:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:6349-6460:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:6147-6246:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5711-5816:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5466-5613:-1:exon

PFKM
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: PFKM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ATP-dependent 6-phosphofructokinase, muscle type isoform X1
translation: MVAVPLSPGLSRFLAPAALSLAALLLLLLLSFVPPAPSRRRSAGRKMSPSPVGPRHSETLGVGKAIAVLTSGGDAQGMNAAVRAVVRVGIYTGARVFYVYEGYQGLVDGGEHIKEATWESVSMMLQLGGTVIGSARCQDFRTREGRLRAARNLVKRGITNLCVIGGDGSLTGADTFRAEWGGLLADLVKTGGITAEEAQRSSHLNIVGMVGSIDNDFCGTDMTIGTDSALHRIMEIVDAITTTAQSHQRTFVLEVMGRHCGYLALITALACGADWVFIPESPPEDDWEEHLCRRLAETRDGGSRLNIIIVAEGAIDKQGKPITSDEIKALVVKRLGYDTRVTILGHVQRGGTPSAFDRILASRMGVEAVMALLEATPDTPACVVSLSGNQAVRLPLMECVQVTKDVTTAMNEGRFEDALKLRGRSFQNNWNVYKLLAHIRPPATKSGYTVAVMNVGAPAAGMNAAVRSTVRIGLIHGHRMLAVHDGFEGLAFGMVEEIGWNTVGGWTGLGGSKLGTKRTLPKKYFEEISTNISKFGIHGLIIIGGFEAFVGGLELVEGRARFEELCIPLCIVPATVSNNVPGSDFSIGADTSLNTITNTCDLIKQSAAGTKRRVFIIETMGGFCGYLATMAGLAAGADAAYIFEEPFSSRDLQANVDHLTEKMKTSVKRGLVLRNERCNENYTTDFIYNLYSEEGKGVFDCRKNVLGHMQQGGSPTPFDRNFGTKMGAKAVAWITGKIKECSRHGRIFANTADSACLLGMRKRSLMFQPITELRQQTDFEHRIPKEQWWLKLRPILKVLAKYNIELDTSETAHLEHLTRKVLVPEATV
SIO_010081: PFKM
subclass of: SO_0000673
so part of: PFKM
location: complement(join(5466..5613,5711..5816,6147..6246,6349..6460,6565..6626,6718..6882,7258..7410,7604..7691,7768..7838,8477..8623,8753..8816,8898..8962,9189..9314,9405..9497,9607..9702,9818..9926,10014..10058,10135..10300,10932..11121,11392..11469,11561..11634,12454..12552,13441..13570))
location: region:5466-13570:-1
so has part: feature:13441-13570:-1:exon
so has part: feature:12454-12552:-1:exon
so has part: feature:11561-11634:-1:exon
so has part: feature:11392-11469:-1:exon
so has part: feature:10932-11121:-1:exon
so has part: feature:10135-10300:-1:exon
so has part: feature:10014-10058:-1:exon
so has part: feature:9818-9926:-1:exon
so has part: feature:9607-9702:-1:exon
so has part: feature:9405-9497:-1:exon
so has part: feature:9189-9314:-1:exon
so has part: feature:8898-8962:-1:exon
so has part: feature:8753-8816:-1:exon
so has part: feature:8477-8623:-1:exon
so has part: feature:7768-7838:-1:exon
so has part: feature:7604-7691:-1:exon
so has part: feature:7258-7410:-1:exon
so has part: feature:6718-6882:-1:exon
so has part: feature:6565-6626:-1:exon
so has part: feature:6349-6460:-1:exon
so has part: feature:6147-6246:-1:exon
so has part: feature:5711-5816:-1:exon
so has part: feature:5466-5613:-1:exon

XP_032939202.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13441-13570:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:12454-12552:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11561-11634:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11392-11469:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10932-11121:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10135-10300:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10014-10058:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9818-9926:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9607-9702:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:9405-9497:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:9189-9314:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:8898-8962:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:8753-8816:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:8477-8623:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:7768-7838:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:7604-7691:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:7258-7410:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6718-6882:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6565-6626:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:6349-6460:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:6147-6246:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5711-5816:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5466-5613:-1:exon

PFKM
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: PFKM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ATP-dependent 6-phosphofructokinase, muscle type isoform X3
translation: MGTGTSKKSSLEPVRSAEQVPQGTQTETGRKMSPSPVGPRHSETLGVGKAIAVLTSGGDAQGMNAAVRAVVRVGIYTGARVFYVYEGYQGLVDGGEHIKEATWESVSMMLQLGGTVIGSARCQDFRTREGRLRAARNLVKRGITNLCVIGGDGSLTGADTFRAEWGGLLADLVKTGGITAEEAQRSSHLNIVGMVGSIDNDFCGTDMTIGTDSALHRIMEIVDAITTTAQSHQRTFVLEVMGRHCGYLALITALACGADWVFIPESPPEDDWEEHLCRRLAETRDGGSRLNIIIVAEGAIDKQGKPITSDEIKALVVKRLGYDTRVTILGHVQRGGTPSAFDRILASRMGVEAVMALLEATPDTPACVVSLSGNQAVRLPLMECVQVTKDVTTAMNEGRFEDALKLRGRSFQNNWNVYKLLAHIRPPATKSGYTVAVMNVGAPAAGMNAAVRSTVRIGLIHGHRMLAVHDGFEGLAFGMVEEIGWNTVGGWTGLGGSKLGTKRTLPKKYFEEISTNISKFGIHGLIIIGGFEAFVGGLELVEGRARFEELCIPLCIVPATVSNNVPGSDFSIGADTSLNTITNTCDLIKQSAAGTKRRVFIIETMGGFCGYLATMAGLAAGADAAYIFEEPFSSRDLQANVDHLTEKMKTSVKRGLVLRNERCNENYTTDFIYNLYSEEGKGVFDCRKNVLGHMQQGGSPTPFDRNFGTKMGAKAVAWITGKIKECSRHGRIFANTADSACLLGMRKRSLMFQPITELRQQTDFEHRIPKEQWWLKLRPILKVLAKYNIELDTSETAHLEHLTRKVLVPEATV
SIO_010081: PFKM
subclass of: SO_0000673
so part of: PFKM
location: complement(join(5466..5613,5711..5816,6147..6246,6349..6460,6565..6626,6718..6882,7258..7410,7604..7691,7768..7838,8477..8623,8753..8816,8898..8962,9189..9314,9405..9497,9607..9702,9818..9926,10014..10058,10135..10300,10932..11121,11392..11469,11561..11634,12454..12552,12985..13069))
location: region:5466-13069:-1
so has part: feature:12985-13069:-1:exon
so has part: feature:12454-12552:-1:exon
so has part: feature:11561-11634:-1:exon
so has part: feature:11392-11469:-1:exon
so has part: feature:10932-11121:-1:exon
so has part: feature:10135-10300:-1:exon
so has part: feature:10014-10058:-1:exon
so has part: feature:9818-9926:-1:exon
so has part: feature:9607-9702:-1:exon
so has part: feature:9405-9497:-1:exon
so has part: feature:9189-9314:-1:exon
so has part: feature:8898-8962:-1:exon
so has part: feature:8753-8816:-1:exon
so has part: feature:8477-8623:-1:exon
so has part: feature:7768-7838:-1:exon
so has part: feature:7604-7691:-1:exon
so has part: feature:7258-7410:-1:exon
so has part: feature:6718-6882:-1:exon
so has part: feature:6565-6626:-1:exon
so has part: feature:6349-6460:-1:exon
so has part: feature:6147-6246:-1:exon
so has part: feature:5711-5816:-1:exon
so has part: feature:5466-5613:-1:exon

XP_032939204.1
type: Protein
SIO_000068: ncbiprotein

position:13069:-1
position: 13069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12985-13069:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:12454-12552:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11561-11634:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11392-11469:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10932-11121:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10135-10300:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10014-10058:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9818-9926:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9607-9702:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:9405-9497:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:9189-9314:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:8898-8962:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:8753-8816:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:8477-8623:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:7768-7838:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:7604-7691:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:7258-7410:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6718-6882:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6565-6626:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:6349-6460:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:6147-6246:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5711-5816:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5466-5613:-1:exon

SENP1
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: SENP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 13569..24427
location: region:13569-24427:1
so has part: feature:13569-24427:1:exon
subclass of: SO_0000010

117009115
type: Gene
SIO_000068: ncbigene

position:13569:1
position: 13569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24427:1
position: 24427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13569-24427:1:exon

SENP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: SENP1
product: SUMO specific peptidase 1, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083314.2
SIO_010081: SENP1
subclass of: SO_0000673
so part of: SENP1
location: join(13569..13661,16227..16299,16388..16484,16954..17089,17621..17724,17966..18201,18641..18695,18851..18889,18995..19079,19861..20013,20186..20317,20749..20952,21869..21948,22326..22410,22743..22838,23225..24427)
location: region:13569-24427:1
so has part: feature:13569-13661:1:exon
so has part: feature:16227-16299:1:exon
so has part: feature:16388-16484:1:exon
so has part: feature:16954-17089:1:exon
so has part: feature:17621-17724:1:exon
so has part: feature:17966-18201:1:exon
so has part: feature:18641-18695:1:exon
so has part: feature:18851-18889:1:exon
so has part: feature:18995-19079:1:exon
so has part: feature:19861-20013:1:exon
so has part: feature:20186-20317:1:exon
so has part: feature:20749-20952:1:exon
so has part: feature:21869-21948:1:exon
so has part: feature:22326-22410:1:exon
so has part: feature:22743-22838:1:exon
so has part: feature:23225-24427:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13569-13661:1:exon

position:13661:1
position: 13661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:16227-16299:1:exon

position:16227:1
position: 16227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16299:1
position: 16299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:16388-16484:1:exon

position:16388:1
position: 16388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16484:1
position: 16484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:16954-17089:1:exon

position:16954:1
position: 16954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17089:1
position: 17089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:17621-17724:1:exon

position:17621:1
position: 17621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17724:1
position: 17724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:17966-18201:1:exon

position:17966:1
position: 17966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18201:1
position: 18201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:18641-18695:1:exon

position:18641:1
position: 18641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18695:1
position: 18695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:18851-18889:1:exon

position:18851:1
position: 18851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18889:1
position: 18889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:18995-19079:1:exon

position:18995:1
position: 18995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19079:1
position: 19079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:19861-20013:1:exon

position:19861:1
position: 19861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20013:1
position: 20013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:20186-20317:1:exon

position:20186:1
position: 20186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20317:1
position: 20317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:20749-20952:1:exon

position:20749:1
position: 20749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20952:1
position: 20952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:21869-21948:1:exon

position:21869:1
position: 21869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21948:1
position: 21948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:22326-22410:1:exon

position:22326:1
position: 22326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22410:1
position: 22410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:22743-22838:1:exon

position:22743:1
position: 22743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22838:1
position: 22838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:23225-24427:1:exon

position:23225:1
position: 23225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SENP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: SENP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sentrin-specific protease 1 isoform X1
translation: MARGQPGQRHHGPGTARRHGLGDLGLAAGSGFFPSKLSSFSCPAGNSSCSLNYTPEIPERFPGANGQWRSSKPRGSRGSFLETRKNSSGNSGAFGGKSTLHGTSFPLKPAPSPSWSRRSPKKAPRRFLSAAEETVREEEREIYRQLLQMVTGKKFSSCKPSPLLPFHLSRCPRSSPSLTQEAPRDDPEALEIHKIPGPAPHPPEPPQNSQNTPLGPSAGFPGGFQPQNSAAPQQREEEPVAGAQSEGSDSVILLKVKDSRTPAPSLPFFQAELWIKELTSVYDSRARERWRQIEEQKALALQLQSQRLQERERSVQDLVDLHLRVPLEKEIPVAVGPEGPERARAGQGDEEFPEITEEMEKEIKSLFRGGNQDEVLSEAFRLTITRKDIQTLNNLNWLNDEIINFYMNLLMERSKEKDLPAVHAFNTFFFTKLKTAGYQAVKRWTKKVDIFSVDLLLVPIHLGVHWCLAVVDFRKKTITYYDSMGGINSEACRILLQYLKQESLDKKRKEFDTNGWALLSKKSQEIPQQMNGSDCGMFACRYAECISKDKPINFTQQHMPYFRKRMAWEILHRKLL
SIO_010081: SENP1
subclass of: SO_0000673
so part of: SENP1
location: join(13569..13661,16227..16299,16388..16484,16954..17089,17621..17724,17966..18201,18641..18695,18851..18889,18995..19079,19861..20013,20186..20317,20749..20952,21869..21948,22326..22410,22743..22838,23225..23287)
location: region:13569-23287:1
so has part: feature:13569-13661:1:exon
so has part: feature:16227-16299:1:exon
so has part: feature:16388-16484:1:exon
so has part: feature:16954-17089:1:exon
so has part: feature:17621-17724:1:exon
so has part: feature:17966-18201:1:exon
so has part: feature:18641-18695:1:exon
so has part: feature:18851-18889:1:exon
so has part: feature:18995-19079:1:exon
so has part: feature:19861-20013:1:exon
so has part: feature:20186-20317:1:exon
so has part: feature:20749-20952:1:exon
so has part: feature:21869-21948:1:exon
so has part: feature:22326-22410:1:exon
so has part: feature:22743-22838:1:exon
so has part: feature:23225-23287:1:exon

XP_032939205.1
type: Protein
SIO_000068: ncbiprotein

position:23287:1
position: 23287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13569-13661:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:16227-16299:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:16388-16484:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:16954-17089:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:17621-17724:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:17966-18201:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:18641-18695:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:18851-18889:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:18995-19079:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:19861-20013:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:20186-20317:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:20749-20952:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:21869-21948:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:22326-22410:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:22743-22838:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:23225-23287:1:exon

SENP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: SENP1
product: SUMO specific peptidase 1, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083315.2
SIO_010081: SENP1
subclass of: SO_0000673
so part of: SENP1
location: join(14945..15510,16227..16299,16388..16484,16954..17089,17621..17724,17966..18201,18641..18695,18851..18889,18995..19079,19861..20013,20186..20317,20749..20952,21869..21948,22326..22410,22743..22838,23225..24427)
location: region:14945-24427:1
so has part: feature:14945-15510:1:exon
so has part: feature:16227-16299:1:exon
so has part: feature:16388-16484:1:exon
so has part: feature:16954-17089:1:exon
so has part: feature:17621-17724:1:exon
so has part: feature:17966-18201:1:exon
so has part: feature:18641-18695:1:exon
so has part: feature:18851-18889:1:exon
so has part: feature:18995-19079:1:exon
so has part: feature:19861-20013:1:exon
so has part: feature:20186-20317:1:exon
so has part: feature:20749-20952:1:exon
so has part: feature:21869-21948:1:exon
so has part: feature:22326-22410:1:exon
so has part: feature:22743-22838:1:exon
so has part: feature:23225-24427:1:exon

position:14945:1
position: 14945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14945-15510:1:exon

position:15510:1
position: 15510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:16227-16299:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:16388-16484:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:16954-17089:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:17621-17724:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:17966-18201:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:18641-18695:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:18851-18889:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:18995-19079:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:19861-20013:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:20186-20317:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:20749-20952:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:21869-21948:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:22326-22410:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:22743-22838:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:23225-24427:1:exon

SENP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: SENP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sentrin-specific protease 1 isoform X2
translation: MRMEARGAARARPGPAFKGFGAESKFFPSKLSSFSCPAGNSSCSLNYTPEIPERFPGANGQWRSSKPRGSRGSFLETRKNSSGNSGAFGGKSTLHGTSFPLKPAPSPSWSRRSPKKAPRRFLSAAEETVREEEREIYRQLLQMVTGKKFSSCKPSPLLPFHLSRCPRSSPSLTQEAPRDDPEALEIHKIPGPAPHPPEPPQNSQNTPLGPSAGFPGGFQPQNSAAPQQREEEPVAGAQSEGSDSVILLKVKDSRTPAPSLPFFQAELWIKELTSVYDSRARERWRQIEEQKALALQLQSQRLQERERSVQDLVDLHLRVPLEKEIPVAVGPEGPERARAGQGDEEFPEITEEMEKEIKSLFRGGNQDEVLSEAFRLTITRKDIQTLNNLNWLNDEIINFYMNLLMERSKEKDLPAVHAFNTFFFTKLKTAGYQAVKRWTKKVDIFSVDLLLVPIHLGVHWCLAVVDFRKKTITYYDSMGGINSEACRILLQYLKQESLDKKRKEFDTNGWALLSKKSQEIPQQMNGSDCGMFACRYAECISKDKPINFTQQHMPYFRKRMAWEILHRKLL
SIO_010081: SENP1
subclass of: SO_0000673
so part of: SENP1
location: join(15436..15510,16227..16299,16388..16484,16954..17089,17621..17724,17966..18201,18641..18695,18851..18889,18995..19079,19861..20013,20186..20317,20749..20952,21869..21948,22326..22410,22743..22838,23225..23287)
location: region:15436-23287:1
so has part: feature:15436-15510:1:exon
so has part: feature:16227-16299:1:exon
so has part: feature:16388-16484:1:exon
so has part: feature:16954-17089:1:exon
so has part: feature:17621-17724:1:exon
so has part: feature:17966-18201:1:exon
so has part: feature:18641-18695:1:exon
so has part: feature:18851-18889:1:exon
so has part: feature:18995-19079:1:exon
so has part: feature:19861-20013:1:exon
so has part: feature:20186-20317:1:exon
so has part: feature:20749-20952:1:exon
so has part: feature:21869-21948:1:exon
so has part: feature:22326-22410:1:exon
so has part: feature:22743-22838:1:exon
so has part: feature:23225-23287:1:exon

XP_032939206.1
type: Protein
SIO_000068: ncbiprotein

position:15436:1
position: 15436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15436-15510:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:16227-16299:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:16388-16484:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:16954-17089:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:17621-17724:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:17966-18201:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:18641-18695:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:18851-18889:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:18995-19079:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:19861-20013:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:20186-20317:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:20749-20952:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:21869-21948:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:22326-22410:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:22743-22838:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:23225-23287:1:exon

COL2A1
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: COL2A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 30515..48777
location: region:30515-48777:1
so has part: feature:30515-48777:1:exon
subclass of: SO_0000010

117009144
type: Gene
SIO_000068: ncbigene

position:30515:1
position: 30515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48777:1
position: 48777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30515-48777:1:exon

COL2A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: COL2A1
product: collagen type II alpha 1 chain
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 6 ESTs, 27 Proteins, and 57% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_033083376.1
SIO_010081: COL2A1
subclass of: SO_0000673
so part of: COL2A1
location: join(30515..30683,33303..33319,33534..33566,33687..33719,33856..33909,34107..34208,34559..34636,34895..34939,35023..35076,35165..35218,35335..35388,35493..35546,35638..35691,35852..35896,35986..36039,36169..36213,36326..36379,36460..36558,36708..36752,37006..37104,37483..37536,38343..38450,38615..38668,38748..38846,39451..39504,39594..39692,39774..39827,39978..40031,40209..40262,40369..40422,40512..40556,40808..40906,41001..41108,41197..41250,41488..41541,42355..42408,42492..42545,42616..42723,42841..42894,42975..43028,43451..43612,43699..43806,43993..44100,44279..44332,44508..44615,44977..45030,45130..45237,45332..45385,45504..45611,46535..46823,47084..47271,47597..47839,48146..48777)
location: region:30515-48777:1
so has part: feature:30515-30683:1:exon
so has part: feature:33303-33319:1:exon
so has part: feature:33534-33566:1:exon
so has part: feature:33687-33719:1:exon
so has part: feature:33856-33909:1:exon
so has part: feature:34107-34208:1:exon
so has part: feature:34559-34636:1:exon
so has part: feature:34895-34939:1:exon
so has part: feature:35023-35076:1:exon
so has part: feature:35165-35218:1:exon
so has part: feature:35335-35388:1:exon
so has part: feature:35493-35546:1:exon
so has part: feature:35638-35691:1:exon
so has part: feature:35852-35896:1:exon
so has part: feature:35986-36039:1:exon
so has part: feature:36169-36213:1:exon
so has part: feature:36326-36379:1:exon
so has part: feature:36460-36558:1:exon
so has part: feature:36708-36752:1:exon
so has part: feature:37006-37104:1:exon
so has part: feature:37483-37536:1:exon
so has part: feature:38343-38450:1:exon
so has part: feature:38615-38668:1:exon
so has part: feature:38748-38846:1:exon
so has part: feature:39451-39504:1:exon
so has part: feature:39594-39692:1:exon
so has part: feature:39774-39827:1:exon
so has part: feature:39978-40031:1:exon
so has part: feature:40209-40262:1:exon
so has part: feature:40369-40422:1:exon
so has part: feature:40512-40556:1:exon
so has part: feature:40808-40906:1:exon
so has part: feature:41001-41108:1:exon
so has part: feature:41197-41250:1:exon
so has part: feature:41488-41541:1:exon
so has part: feature:42355-42408:1:exon
so has part: feature:42492-42545:1:exon
so has part: feature:42616-42723:1:exon
so has part: feature:42841-42894:1:exon
so has part: feature:42975-43028:1:exon
so has part: feature:43451-43612:1:exon
so has part: feature:43699-43806:1:exon
so has part: feature:43993-44100:1:exon
so has part: feature:44279-44332:1:exon
so has part: feature:44508-44615:1:exon
so has part: feature:44977-45030:1:exon
so has part: feature:45130-45237:1:exon
so has part: feature:45332-45385:1:exon
so has part: feature:45504-45611:1:exon
so has part: feature:46535-46823:1:exon
so has part: feature:47084-47271:1:exon
so has part: feature:47597-47839:1:exon
so has part: feature:48146-48777:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:30515-30683:1:exon

position:30683:1
position: 30683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:33303-33319:1:exon

position:33303:1
position: 33303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33319:1
position: 33319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:33534-33566:1:exon

position:33534:1
position: 33534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33566:1
position: 33566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:33687-33719:1:exon

position:33687:1
position: 33687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33719:1
position: 33719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:33856-33909:1:exon

position:33856:1
position: 33856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33909:1
position: 33909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:34107-34208:1:exon

position:34107:1
position: 34107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34208:1
position: 34208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:34559-34636:1:exon

position:34559:1
position: 34559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34636:1
position: 34636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:34895-34939:1:exon

position:34895:1
position: 34895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34939:1
position: 34939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:35023-35076:1:exon

position:35023:1
position: 35023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35076:1
position: 35076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:35165-35218:1:exon

position:35165:1
position: 35165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35218:1
position: 35218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:35335-35388:1:exon

position:35335:1
position: 35335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35388:1
position: 35388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:35493-35546:1:exon

position:35493:1
position: 35493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35546:1
position: 35546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:35638-35691:1:exon

position:35638:1
position: 35638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35691:1
position: 35691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:35852-35896:1:exon

position:35852:1
position: 35852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35896:1
position: 35896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:35986-36039:1:exon

position:35986:1
position: 35986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36039:1
position: 36039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:36169-36213:1:exon

position:36169:1
position: 36169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36213:1
position: 36213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:36326-36379:1:exon

position:36326:1
position: 36326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36379:1
position: 36379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:36460-36558:1:exon

position:36460:1
position: 36460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36558:1
position: 36558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:36708-36752:1:exon

position:36708:1
position: 36708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36752:1
position: 36752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:37006-37104:1:exon

position:37006:1
position: 37006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37104:1
position: 37104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:37483-37536:1:exon

position:37483:1
position: 37483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37536:1
position: 37536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:38343-38450:1:exon

position:38343:1
position: 38343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38450:1
position: 38450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:38615-38668:1:exon

position:38615:1
position: 38615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38668:1
position: 38668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:38748-38846:1:exon

position:38748:1
position: 38748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38846:1
position: 38846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:39451-39504:1:exon

position:39451:1
position: 39451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39504:1
position: 39504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:39594-39692:1:exon

position:39594:1
position: 39594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39692:1
position: 39692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:39774-39827:1:exon

position:39774:1
position: 39774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39827:1
position: 39827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:39978-40031:1:exon

position:39978:1
position: 39978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40031:1
position: 40031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:40209-40262:1:exon

position:40209:1
position: 40209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40262:1
position: 40262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:40369-40422:1:exon

position:40369:1
position: 40369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40422:1
position: 40422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:40512-40556:1:exon

position:40512:1
position: 40512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40556:1
position: 40556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:40808-40906:1:exon

position:40808:1
position: 40808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40906:1
position: 40906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:41001-41108:1:exon

position:41001:1
position: 41001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41108:1
position: 41108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:41197-41250:1:exon

position:41197:1
position: 41197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41250:1
position: 41250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 35
SIO_000628: feature:41488-41541:1:exon

position:41488:1
position: 41488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41541:1
position: 41541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 36
SIO_000628: feature:42355-42408:1:exon

position:42355:1
position: 42355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42408:1
position: 42408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 37
SIO_000628: feature:42492-42545:1:exon

position:42492:1
position: 42492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42545:1
position: 42545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 38
SIO_000628: feature:42616-42723:1:exon

position:42616:1
position: 42616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42723:1
position: 42723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 39
SIO_000628: feature:42841-42894:1:exon

position:42841:1
position: 42841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42894:1
position: 42894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 40
SIO_000628: feature:42975-43028:1:exon

position:42975:1
position: 42975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43028:1
position: 43028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 41
SIO_000628: feature:43451-43612:1:exon

position:43451:1
position: 43451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43612:1
position: 43612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 42
SIO_000628: feature:43699-43806:1:exon

position:43699:1
position: 43699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43806:1
position: 43806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 43
SIO_000628: feature:43993-44100:1:exon

position:43993:1
position: 43993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44100:1
position: 44100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 44
SIO_000628: feature:44279-44332:1:exon

position:44279:1
position: 44279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44332:1
position: 44332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 45
SIO_000628: feature:44508-44615:1:exon

position:44508:1
position: 44508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44615:1
position: 44615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 46
SIO_000628: feature:44977-45030:1:exon

position:44977:1
position: 44977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45030:1
position: 45030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 47
SIO_000628: feature:45130-45237:1:exon

position:45130:1
position: 45130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45237:1
position: 45237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 48
SIO_000628: feature:45332-45385:1:exon

position:45332:1
position: 45332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45385:1
position: 45385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 49
SIO_000628: feature:45504-45611:1:exon

position:45504:1
position: 45504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45611:1
position: 45611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 50
SIO_000628: feature:46535-46823:1:exon

position:46535:1
position: 46535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46823:1
position: 46823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 51
SIO_000628: feature:47084-47271:1:exon

position:47084:1
position: 47084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47271:1
position: 47271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 52
SIO_000628: feature:47597-47839:1:exon

position:47597:1
position: 47597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47839:1
position: 47839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 53
SIO_000628: feature:48146-48777:1:exon

position:48146:1
position: 48146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

COL2A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: COL2A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: collagen alpha-1(II) chain
translation: MPGHRPAPGGHRSVRSGHRSEPAATGAVPGAAPRPGLLLLLLLCLAAAAAAQDRDLRKPGPKGQKGEPGDIKDVVGPRGPPGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEPGEPGAAGPMGPRGPPGPPGKPGDDGETGKPGKSGDRGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLAGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPGADGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRAGDPGLQGPAGPPGEKGEPGEDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPPGPVGPPGLTGPAGEPGREGSPGSDGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGPTGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQGLPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQPEKGPDPGRYMRADEAAPGLRPHDAEVDATLKALNNQIESIRSPEGSRKNPARTCRDIKLCHPDWKSGDYWIDPNQGCTLDAIKVFCNMATGETCVYPSPGSIPRKNWWSSKSKEKKHVWFGETINGGFHFSYGAEDLAPNTANIQMTFLRLLSTEGSQNVTYHCRNSVAYLDEESGSLRKALLIQGSNDVEIRAEGNSRFTYSVLEDGCTKHTGKWGRTVIEYRSQKTSRLPIVDIAPMDIGGPEQEFGVDLGPVCFL
SIO_010081: COL2A1
subclass of: SO_0000673
so part of: COL2A1
location: join(30515..30683,33303..33319,33534..33566,33687..33719,33856..33909,34107..34208,34559..34636,34895..34939,35023..35076,35165..35218,35335..35388,35493..35546,35638..35691,35852..35896,35986..36039,36169..36213,36326..36379,36460..36558,36708..36752,37006..37104,37483..37536,38343..38450,38615..38668,38748..38846,39451..39504,39594..39692,39774..39827,39978..40031,40209..40262,40369..40422,40512..40556,40808..40906,41001..41108,41197..41250,41488..41541,42355..42408,42492..42545,42616..42723,42841..42894,42975..43028,43451..43612,43699..43806,43993..44100,44279..44332,44508..44615,44977..45030,45130..45237,45332..45385,45504..45611,46535..46823,47084..47271,47597..47839,48146..48292)
location: region:30515-48292:1
so has part: feature:30515-30683:1:exon
so has part: feature:33303-33319:1:exon
so has part: feature:33534-33566:1:exon
so has part: feature:33687-33719:1:exon
so has part: feature:33856-33909:1:exon
so has part: feature:34107-34208:1:exon
so has part: feature:34559-34636:1:exon
so has part: feature:34895-34939:1:exon
so has part: feature:35023-35076:1:exon
so has part: feature:35165-35218:1:exon
so has part: feature:35335-35388:1:exon
so has part: feature:35493-35546:1:exon
so has part: feature:35638-35691:1:exon
so has part: feature:35852-35896:1:exon
so has part: feature:35986-36039:1:exon
so has part: feature:36169-36213:1:exon
so has part: feature:36326-36379:1:exon
so has part: feature:36460-36558:1:exon
so has part: feature:36708-36752:1:exon
so has part: feature:37006-37104:1:exon
so has part: feature:37483-37536:1:exon
so has part: feature:38343-38450:1:exon
so has part: feature:38615-38668:1:exon
so has part: feature:38748-38846:1:exon
so has part: feature:39451-39504:1:exon
so has part: feature:39594-39692:1:exon
so has part: feature:39774-39827:1:exon
so has part: feature:39978-40031:1:exon
so has part: feature:40209-40262:1:exon
so has part: feature:40369-40422:1:exon
so has part: feature:40512-40556:1:exon
so has part: feature:40808-40906:1:exon
so has part: feature:41001-41108:1:exon
so has part: feature:41197-41250:1:exon
so has part: feature:41488-41541:1:exon
so has part: feature:42355-42408:1:exon
so has part: feature:42492-42545:1:exon
so has part: feature:42616-42723:1:exon
so has part: feature:42841-42894:1:exon
so has part: feature:42975-43028:1:exon
so has part: feature:43451-43612:1:exon
so has part: feature:43699-43806:1:exon
so has part: feature:43993-44100:1:exon
so has part: feature:44279-44332:1:exon
so has part: feature:44508-44615:1:exon
so has part: feature:44977-45030:1:exon
so has part: feature:45130-45237:1:exon
so has part: feature:45332-45385:1:exon
so has part: feature:45504-45611:1:exon
so has part: feature:46535-46823:1:exon
so has part: feature:47084-47271:1:exon
so has part: feature:47597-47839:1:exon
so has part: feature:48146-48292:1:exon

XP_032939267.1
type: Protein
SIO_000068: ncbiprotein

position:48292:1
position: 48292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30515-30683:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:33303-33319:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:33534-33566:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:33687-33719:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:33856-33909:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:34107-34208:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:34559-34636:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:34895-34939:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:35023-35076:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:35165-35218:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:35335-35388:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:35493-35546:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:35638-35691:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:35852-35896:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:35986-36039:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:36169-36213:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:36326-36379:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:36460-36558:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:36708-36752:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:37006-37104:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:37483-37536:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:38343-38450:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:38615-38668:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:38748-38846:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:39451-39504:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:39594-39692:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:39774-39827:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:39978-40031:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:40209-40262:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:40369-40422:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:40512-40556:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:40808-40906:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:41001-41108:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:41197-41250:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:41488-41541:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:42355-42408:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:42492-42545:1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:42616-42723:1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:42841-42894:1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:42975-43028:1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:43451-43612:1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:43699-43806:1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:43993-44100:1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:44279-44332:1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:44508-44615:1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:44977-45030:1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:45130-45237:1:exon

urn:…
SIO_000300: 48
SIO_000628: feature:45332-45385:1:exon

urn:…
SIO_000300: 49
SIO_000628: feature:45504-45611:1:exon

urn:…
SIO_000300: 50
SIO_000628: feature:46535-46823:1:exon

urn:…
SIO_000300: 51
SIO_000628: feature:47084-47271:1:exon

urn:…
SIO_000300: 52
SIO_000628: feature:47597-47839:1:exon

urn:…
SIO_000300: 53
SIO_000628: feature:48146-48292:1:exon

TMEM106C
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: TMEM106C
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(50524..54051)
location: region:50524-54051:-1
so has part: feature:50524-54051:-1:exon
subclass of: SO_0000010

117009123
type: Gene
SIO_000068: ncbigene

position:50524:-1
position: 50524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54051:-1
position: 54051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50524-54051:-1:exon

TMEM106C
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: TMEM106C
product: transmembrane protein 106C, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083329.1
SIO_010081: TMEM106C
subclass of: SO_0000673
so part of: TMEM106C
location: complement(join(50524..51460,51754..51807,52055..52104,52249..52389,52470..52629,52976..53039,53133..53333,53967..54051))
location: region:50524-54051:-1
so has part: feature:53967-54051:-1:exon
so has part: feature:53133-53333:-1:exon
so has part: feature:52976-53039:-1:exon
so has part: feature:52470-52629:-1:exon
so has part: feature:52249-52389:-1:exon
so has part: feature:52055-52104:-1:exon
so has part: feature:51754-51807:-1:exon
so has part: feature:50524-51460:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:53967-54051:-1:exon

position:53967:-1
position: 53967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:53133-53333:-1:exon

position:53133:-1
position: 53133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:53333:-1
position: 53333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:52976-53039:-1:exon

position:52976:-1
position: 52976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:53039:-1
position: 53039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:52470-52629:-1:exon

position:52470:-1
position: 52470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:52629:-1
position: 52629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:52249-52389:-1:exon

position:52249:-1
position: 52249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:52389:-1
position: 52389
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:52055-52104:-1:exon

position:52055:-1
position: 52055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:52104:-1
position: 52104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:51754-51807:-1:exon

position:51754:-1
position: 51754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51807:-1
position: 51807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:50524-51460:-1:exon

position:51460:-1
position: 51460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TMEM106C
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: TMEM106C
product: transmembrane protein 106C, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083328.2
SIO_010081: TMEM106C
subclass of: SO_0000673
so part of: TMEM106C
location: complement(join(50524..51460,51754..51807,52055..52104,52249..52389,52470..52629,52976..53039,53133..53333,53943..54050))
location: region:50524-54050:-1
so has part: feature:53943-54050:-1:exon
so has part: feature:53133-53333:-1:exon
so has part: feature:52976-53039:-1:exon
so has part: feature:52470-52629:-1:exon
so has part: feature:52249-52389:-1:exon
so has part: feature:52055-52104:-1:exon
so has part: feature:51754-51807:-1:exon
so has part: feature:50524-51460:-1:exon

position:54050:-1
position: 54050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53943-54050:-1:exon

position:53943:-1
position: 53943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:53133-53333:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:52976-53039:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:52470-52629:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:52249-52389:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:52055-52104:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:51754-51807:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:50524-51460:-1:exon

TMEM106C
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: TMEM106C
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transmembrane protein 106C
translation: MGPVRSLSAPGAAPSPRKAEDEEQERLLPSQEPGEDAARIPYMEFAGQDSITCPTCQGTGRIPTEQVNELVALIPYSDQRLRPQRTKLYVLLSVLLCLLLSGLGGFFLFPHSVLVDDDGIKVVQVWFDRKNSAVLLAITATLRIRNSNFYSVTVSSLSSQVQYMNTVVGSQQLTNVSSIQPLRDKLVNFTVKAELGGSLSYVYFFCTLPKVKVHNIVILMRTSVKLSYIGHSTQSALETFHYLDCSSNSTGAP
SIO_010081: TMEM106C
subclass of: SO_0000673
so part of: TMEM106C
location: complement(join(51361..51460,51754..51807,52055..52104,52249..52389,52470..52629,52976..53039,53133..53325))
location: region:51361-53325:-1
so has part: feature:53133-53325:-1:exon
so has part: feature:52976-53039:-1:exon
so has part: feature:52470-52629:-1:exon
so has part: feature:52249-52389:-1:exon
so has part: feature:52055-52104:-1:exon
so has part: feature:51754-51807:-1:exon
so has part: feature:51361-51460:-1:exon

XP_032939219.1
type: Protein
SIO_000068: ncbiprotein

position:51361:-1
position: 51361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:53325:-1
position: 53325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53133-53325:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:52976-53039:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:52470-52629:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:52249-52389:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:52055-52104:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:51754-51807:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:51361-51460:-1:exon

TMEM106C
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: TMEM106C
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transmembrane protein 106C
translation: MGPVRSLSAPGAAPSPRKAEDEEQERLLPSQEPGEDAARIPYMEFAGQDSITCPTCQGTGRIPTEQVNELVALIPYSDQRLRPQRTKLYVLLSVLLCLLLSGLGGFFLFPHSVLVDDDGIKVVQVWFDRKNSAVLLAITATLRIRNSNFYSVTVSSLSSQVQYMNTVVGSQQLTNVSSIQPLRDKLVNFTVKAELGGSLSYVYFFCTLPKVKVHNIVILMRTSVKLSYIGHSTQSALETFHYLDCSSNSTGAP
SIO_010081: TMEM106C
subclass of: SO_0000673
so part of: TMEM106C
location: complement(join(51361..51460,51754..51807,52055..52104,52249..52389,52470..52629,52976..53039,53133..53325))
location: region:51361-53325:-1
so has part: feature:53133-53325:-1:exon
so has part: feature:52976-53039:-1:exon
so has part: feature:52470-52629:-1:exon
so has part: feature:52249-52389:-1:exon
so has part: feature:52055-52104:-1:exon
so has part: feature:51754-51807:-1:exon
so has part: feature:51361-51460:-1:exon

XP_032939220.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53133-53325:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:52976-53039:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:52470-52629:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:52249-52389:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:52055-52104:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:51754-51807:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:51361-51460:-1:exon

VDR
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: VDR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 57250..70062
location: region:57250-70062:1
so has part: feature:57250-70062:1:exon
subclass of: SO_0000010

117008939
type: Gene
SIO_000068: ncbigene

position:57250:1
position: 57250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:70062:1
position: 70062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57250-70062:1:exon

VDR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: VDR
product: vitamin D receptor, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_033083079.1
SIO_010081: VDR
subclass of: SO_0000673
so part of: VDR
location: join(57250..57315,58037..58091,63309..63459,64771..64901,67249..67433,67541..68196,68549..68700,68959..69075,69769..70062)
location: region:57250-70062:1
so has part: feature:57250-57315:1:exon
so has part: feature:58037-58091:1:exon
so has part: feature:63309-63459:1:exon
so has part: feature:64771-64901:1:exon
so has part: feature:67249-67433:1:exon
so has part: feature:67541-68196:1:exon
so has part: feature:68549-68700:1:exon
so has part: feature:68959-69075:1:exon
so has part: feature:69769-70062:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:57250-57315:1:exon

position:57315:1
position: 57315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:58037-58091:1:exon

position:58037:1
position: 58037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58091:1
position: 58091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:63309-63459:1:exon

position:63309:1
position: 63309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63459:1
position: 63459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:64771-64901:1:exon

position:64771:1
position: 64771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64901:1
position: 64901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:67249-67433:1:exon

position:67249:1
position: 67249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67433:1
position: 67433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:67541-68196:1:exon

position:67541:1
position: 67541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68196:1
position: 68196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:68549-68700:1:exon

position:68549:1
position: 68549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68700:1
position: 68700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:68959-69075:1:exon

position:68959:1
position: 68959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69075:1
position: 69075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:69769-70062:1:exon

position:69769:1
position: 69769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

VDR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: VDR
product: vitamin D receptor, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_033083080.1
SIO_010081: VDR
subclass of: SO_0000673
so part of: VDR
location: join(57250..57315,58037..58091,63309..63459,64771..64901,67249..67433,67541..67655,68025..68196,68549..68700,68959..69075,69769..70062)
location: region:57250-70062:1
so has part: feature:57250-57315:1:exon
so has part: feature:58037-58091:1:exon
so has part: feature:63309-63459:1:exon
so has part: feature:64771-64901:1:exon
so has part: feature:67249-67433:1:exon
so has part: feature:67541-67655:1:exon
so has part: feature:68025-68196:1:exon
so has part: feature:68549-68700:1:exon
so has part: feature:68959-69075:1:exon
so has part: feature:69769-70062:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:57250-57315:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:58037-58091:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:63309-63459:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:64771-64901:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:67249-67433:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:67541-67655:1:exon

position:67655:1
position: 67655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:68025-68196:1:exon

position:68025:1
position: 68025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:68549-68700:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:68959-69075:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:69769-70062:1:exon

VDR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: VDR
product: vitamin D receptor, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_042780083.1
SIO_010081: VDR
subclass of: SO_0000673
so part of: VDR
location: join(57250..57315,58037..58091,63309..63459,64771..64901,67249..67433,67541..68196,68549..68700,68959..69221)
location: region:57250-69221:1
so has part: feature:57250-57315:1:exon
so has part: feature:58037-58091:1:exon
so has part: feature:63309-63459:1:exon
so has part: feature:64771-64901:1:exon
so has part: feature:67249-67433:1:exon
so has part: feature:67541-68196:1:exon
so has part: feature:68549-68700:1:exon
so has part: feature:68959-69221:1:exon

position:69221:1
position: 69221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57250-57315:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:58037-58091:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:63309-63459:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:64771-64901:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:67249-67433:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:67541-68196:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:68549-68700:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:68959-69221:1:exon

VDR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: VDR
product: vitamin D receptor, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_042780082.1
SIO_010081: VDR
subclass of: SO_0000673
so part of: VDR
location: join(57250..57315,58037..58091,63309..63459,64771..64901,67249..67433,67541..68196,68549..69014)
location: region:57250-69014:1
so has part: feature:57250-57315:1:exon
so has part: feature:58037-58091:1:exon
so has part: feature:63309-63459:1:exon
so has part: feature:64771-64901:1:exon
so has part: feature:67249-67433:1:exon
so has part: feature:67541-68196:1:exon
so has part: feature:68549-69014:1:exon

position:69014:1
position: 69014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57250-57315:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:58037-58091:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:63309-63459:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:64771-64901:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:67249-67433:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:67541-68196:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:68549-69014:1:exon

VDR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: VDR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: vitamin D3 receptor isoform X1
translation: MDPGASSTSLADPSGDPERNVSRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKKKAMFTCPFNGSCHITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMILKRKEEEALKESLKPKLSEEQQKVIDVLLEAHRKTYDPTYADFTKFRPPVRSNPSSRGATKSSSLLTQDLSSEDSSDLFGFSTFPGVPQFLPAPNWDWEPGRDPGTRSGLEVMLQTSPGSRGGEGLCQSPNQPHHEGLPCSSSSPPHIPRMGSQTAPKSPLWRSWGQRWSSSTRIWHSRGFPHLLRGLTAAQSPPGPLRAPQSLSLRADSAEPAPFPSLALPEEQDESSSMNLEFSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLSAEDQIVLLKCSAIEVIMLRSNQSFTLEDMSWTCGSNDFKYRVSDVTQAGHSMDLLEPLVKFQVGLKKLNLHEEEHVLLMAICILSPDRPGVREPRRVEALQERLSEVLQSYIRARHPPPGSRLLYAKMIQKLADLRSLNEEHSRQYRCLSFQPEHSMQLTPLVLEVFGNEIS
SIO_010081: VDR
subclass of: SO_0000673
so part of: VDR
location: join(63311..63459,64771..64901,67249..67433,67541..68196,68549..68700,68959..69075,69769..70028)
location: region:63311-70028:1
so has part: feature:63311-63459:1:exon
so has part: feature:64771-64901:1:exon
so has part: feature:67249-67433:1:exon
so has part: feature:67541-68196:1:exon
so has part: feature:68549-68700:1:exon
so has part: feature:68959-69075:1:exon
so has part: feature:69769-70028:1:exon

XP_032938970.1
type: Protein
SIO_000068: ncbiprotein

position:63311:1
position: 63311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:70028:1
position: 70028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63311-63459:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:64771-64901:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:67249-67433:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:67541-68196:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:68549-68700:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:68959-69075:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:69769-70028:1:exon

VDR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: VDR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: vitamin D3 receptor isoform X4
translation: MDPGASSTSLADPSGDPERNVSRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKKKAMFTCPFNGSCHITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMILKRKEEEALKESLKPKLSEEQQKVIDVLLEAHRKTYDPTYADFTKFRPPVRSNPSSRGATKSSSLLTQDLSSEDSSDLFGFSTFPDSAEPAPFPSLALPEEQDESSSMNLEFSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLSAEDQIVLLKCSAIEVIMLRSNQSFTLEDMSWTCGSNDFKYRVSDVTQAGHSMDLLEPLVKFQVGLKKLNLHEEEHVLLMAICILSPDRPGVREPRRVEALQERLSEVLQSYIRARHPPPGSRLLYAKMIQKLADLRSLNEEHSRQYRCLSFQPEHSMQLTPLVLEVFGNEIS
SIO_010081: VDR
subclass of: SO_0000673
so part of: VDR
location: join(63311..63459,64771..64901,67249..67433,67541..67655,68025..68196,68549..68700,68959..69075,69769..70028)
location: region:63311-70028:1
so has part: feature:63311-63459:1:exon
so has part: feature:64771-64901:1:exon
so has part: feature:67249-67433:1:exon
so has part: feature:67541-67655:1:exon
so has part: feature:68025-68196:1:exon
so has part: feature:68549-68700:1:exon
so has part: feature:68959-69075:1:exon
so has part: feature:69769-70028:1:exon

XP_032938971.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:63311-63459:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:64771-64901:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:67249-67433:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:67541-67655:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:68025-68196:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:68549-68700:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:68959-69075:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:69769-70028:1:exon

VDR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: VDR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: vitamin D3 receptor isoform X3
translation: MDPGASSTSLADPSGDPERNVSRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKKKAMFTCPFNGSCHITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMILKRKEEEALKESLKPKLSEEQQKVIDVLLEAHRKTYDPTYADFTKFRPPVRSNPSSRGATKSSSLLTQDLSSEDSSDLFGFSTFPGVPQFLPAPNWDWEPGRDPGTRSGLEVMLQTSPGSRGGEGLCQSPNQPHHEGLPCSSSSPPHIPRMGSQTAPKSPLWRSWGQRWSSSTRIWHSRGFPHLLRGLTAAQSPPGPLRAPQSLSLRADSAEPAPFPSLALPEEQDESSSMNLEFSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLSAEDQIVLLKCSAIEVIMLRSNQSFTLEDMSWTCGSNDFKYRVSDVTQAGHSMDLLEPLVKFQVGLKKLNLHEEEHVLLMAICILSPGRDKPTPKP
SIO_010081: VDR
subclass of: SO_0000673
so part of: VDR
location: join(63311..63459,64771..64901,67249..67433,67541..68196,68549..68700,68959..69104)
location: region:63311-69104:1
so has part: feature:63311-63459:1:exon
so has part: feature:64771-64901:1:exon
so has part: feature:67249-67433:1:exon
so has part: feature:67541-68196:1:exon
so has part: feature:68549-68700:1:exon
so has part: feature:68959-69104:1:exon

XP_042636017.1
type: Protein
SIO_000068: ncbiprotein

position:69104:1
position: 69104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63311-63459:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:64771-64901:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:67249-67433:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:67541-68196:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:68549-68700:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:68959-69104:1:exon

VDR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: VDR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: vitamin D3 receptor isoform X2
translation: MDPGASSTSLADPSGDPERNVSRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKKKAMFTCPFNGSCHITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMILKRKEEEALKESLKPKLSEEQQKVIDVLLEAHRKTYDPTYADFTKFRPPVRSNPSSRGATKSSSLLTQDLSSEDSSDLFGFSTFPGVPQFLPAPNWDWEPGRDPGTRSGLEVMLQTSPGSRGGEGLCQSPNQPHHEGLPCSSSSPPHIPRMGSQTAPKSPLWRSWGQRWSSSTRIWHSRGFPHLLRGLTAAQSPPGPLRAPQSLSLRADSAEPAPFPSLALPEEQDESSSMNLEFSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLSAEDQIVLLKCSAIEVIMLRSNQSFTLEDMSWTCGSNDFKYRVSDVTQGTAIPAQIPALPGFVLRKGAAPAPNLGGLGDKWHLKCPQCYPSVAHPDVSETIPSQKGQIPFQRDKSPCRGRDPFPEPL
SIO_010081: VDR
subclass of: SO_0000673
so part of: VDR
location: join(63311..63459,64771..64901,67249..67433,67541..68196,68549..68939)
location: region:63311-68939:1
so has part: feature:63311-63459:1:exon
so has part: feature:64771-64901:1:exon
so has part: feature:67249-67433:1:exon
so has part: feature:67541-68196:1:exon
so has part: feature:68549-68939:1:exon

XP_042636016.1
type: Protein
SIO_000068: ncbiprotein

position:68939:1
position: 68939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63311-63459:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:64771-64901:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:67249-67433:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:67541-68196:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:68549-68939:1:exon

MYG1
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: MYG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 72202..74418
location: region:72202-74418:1
so has part: feature:72202-74418:1:exon
subclass of: SO_0000010

117009184
type: Gene
SIO_000068: ncbigene

position:72202:1
position: 72202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74418:1
position: 74418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:72202-74418:1:exon

MYG1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: MYG1
product: MYG1 exonuclease
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083427.2
SIO_010081: MYG1
subclass of: SO_0000673
so part of: MYG1
location: join(72202..72372,72611..72723,72788..72947,73164..73313,73386..73508,73722..73903,73978..74418)
location: region:72202-74418:1
so has part: feature:72202-72372:1:exon
so has part: feature:72611-72723:1:exon
so has part: feature:72788-72947:1:exon
so has part: feature:73164-73313:1:exon
so has part: feature:73386-73508:1:exon
so has part: feature:73722-73903:1:exon
so has part: feature:73978-74418:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:72202-72372:1:exon

position:72372:1
position: 72372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:72611-72723:1:exon

position:72611:1
position: 72611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:72723:1
position: 72723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:72788-72947:1:exon

position:72788:1
position: 72788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:72947:1
position: 72947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:73164-73313:1:exon

position:73164:1
position: 73164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:73313:1
position: 73313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:73386-73508:1:exon

position:73386:1
position: 73386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:73508:1
position: 73508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:73722-73903:1:exon

position:73722:1
position: 73722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:73903:1
position: 73903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:73978-74418:1:exon

position:73978:1
position: 73978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MYG1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: MYG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: MYG1 exonuclease
translation: MAATGTVTGTGTGTGTGHKRPHPEPAARIGTHDGTFHCDEALACFLLRLLPRYRDAEIVRTRDPQRLAGCDVVVDVGGEYDPGRHRYDHHQRSFTESMRSLRPDKPWSTKLSSAGLVYCHFGSQILAGLLGQPEDGPVVTALYDKLYENFVEEIDAMDNGIAPAAGEPRYALSTTLSARVGHLNPRWNEPDQDTEAGFRRAMELVGSEFLERLDFYHRAWLPARALVEEAIQNRFQVDGSGQVLELSQGGCPWKEHLFQLERELALPRPLQLVLFPDRGGQWRVQSVPAAPHSFESRLPLPEAWRGLRDEALSELAGIPGCVFVHASGFIGGNRTREGALEMARRTLELGGGTERT
SIO_010081: MYG1
subclass of: SO_0000673
so part of: MYG1
location: join(72211..72372,72611..72723,72788..72947,73164..73313,73386..73508,73722..73903,73978..74158)
location: region:72211-74158:1
so has part: feature:72211-72372:1:exon
so has part: feature:72611-72723:1:exon
so has part: feature:72788-72947:1:exon
so has part: feature:73164-73313:1:exon
so has part: feature:73386-73508:1:exon
so has part: feature:73722-73903:1:exon
so has part: feature:73978-74158:1:exon

XP_032939318.1
type: Protein
SIO_000068: ncbiprotein

position:72211:1
position: 72211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74158:1
position: 74158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:72211-72372:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:72611-72723:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:72788-72947:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:73164-73313:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:73386-73508:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:73722-73903:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:73978-74158:1:exon

AAAS
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: AAAS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(75747..83926)
location: region:75747-83926:-1
so has part: feature:75747-83926:-1:exon
subclass of: SO_0000010

117009183
type: Gene
SIO_000068: ncbigene

position:75747:-1
position: 75747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:83926:-1
position: 83926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75747-83926:-1:exon

AAAS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: AAAS
product: aladin WD repeat nucleoporin
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083425.2
SIO_010081: AAAS
subclass of: SO_0000673
so part of: AAAS
location: complement(join(75747..75965,76472..76556,77518..77599,77690..77757,77865..77958,78282..78372,79116..79176,79660..79784,79924..80044,80325..80468,81105..81203,81589..81635,81900..81991,82082..82137,82210..82337,83566..83701,83867..83926))
location: region:75747-83926:-1
so has part: feature:83867-83926:-1:exon
so has part: feature:83566-83701:-1:exon
so has part: feature:82210-82337:-1:exon
so has part: feature:82082-82137:-1:exon
so has part: feature:81900-81991:-1:exon
so has part: feature:81589-81635:-1:exon
so has part: feature:81105-81203:-1:exon
so has part: feature:80325-80468:-1:exon
so has part: feature:79924-80044:-1:exon
so has part: feature:79660-79784:-1:exon
so has part: feature:79116-79176:-1:exon
so has part: feature:78282-78372:-1:exon
so has part: feature:77865-77958:-1:exon
so has part: feature:77690-77757:-1:exon
so has part: feature:77518-77599:-1:exon
so has part: feature:76472-76556:-1:exon
so has part: feature:75747-75965:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:83867-83926:-1:exon

position:83867:-1
position: 83867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:83566-83701:-1:exon

position:83566:-1
position: 83566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:83701:-1
position: 83701
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:82210-82337:-1:exon

position:82210:-1
position: 82210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:82337:-1
position: 82337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:82082-82137:-1:exon

position:82082:-1
position: 82082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:82137:-1
position: 82137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:81900-81991:-1:exon

position:81900:-1
position: 81900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81991:-1
position: 81991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:81589-81635:-1:exon

position:81589:-1
position: 81589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81635:-1
position: 81635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:81105-81203:-1:exon

position:81105:-1
position: 81105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81203:-1
position: 81203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:80325-80468:-1:exon

position:80325:-1
position: 80325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:80468:-1
position: 80468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:79924-80044:-1:exon

position:79924:-1
position: 79924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:80044:-1
position: 80044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:79660-79784:-1:exon

position:79660:-1
position: 79660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:79784:-1
position: 79784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:79116-79176:-1:exon

position:79116:-1
position: 79116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:79176:-1
position: 79176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:78282-78372:-1:exon

position:78282:-1
position: 78282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:78372:-1
position: 78372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:77865-77958:-1:exon

position:77865:-1
position: 77865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77958:-1
position: 77958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:77690-77757:-1:exon

position:77690:-1
position: 77690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77757:-1
position: 77757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:77518-77599:-1:exon

position:77518:-1
position: 77518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77599:-1
position: 77599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:76472-76556:-1:exon

position:76472:-1
position: 76472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:76556:-1
position: 76556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:75747-75965:-1:exon

position:75965:-1
position: 75965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AAAS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: AAAS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: aladin
translation: MCSLELFPPPPPPGDVTLYELNNALVCGRLSEQLPLAFQSQVPELPVLSLPKEPLKAHGRLEPSARPPFIHHRESLWKRCLGAWRDAGLCGLLRELASAEEDGLRWLRTGSSHALAVCRWLSSLHGSLFPHLSLTSEDMIAAFSQAVDWAGCTIRAFAWHPHTNKFAVALLDDSIRVYNSNSATVPSLKHRLQRNVAAMAWKPLCASILAVACQSCVLVWHLDPTSLSTRPSSGCAQVLSYPGHSPVTSLAWAPSGERLLSASPVDTAMLVWDVSTETCVQLQWFGGGGVTYLAWSPDGSKVLAATPSAVFRVWEAQMWTCERWPTIRGRCQTGCWSPDGSRLLFTVLGESVIYSLSFSEYRGEMQGQVGGSKTASIVADLSETTFETLYGEERIGGEVHSMVWDPTGERLAVIIRGQPEAPGSQVAVAVFRTRNSPVFELLPCGFVRGERGARPQLISFHPCFPQGALLTVCWSSGKISHIPFFFVSALEPRGSPRRSPVPVLGSVREQPLFSEL
SIO_010081: AAAS
subclass of: SO_0000673
so part of: AAAS
location: complement(join(75831..75965,76472..76556,77518..77599,77690..77757,77865..77958,78282..78372,79116..79176,79660..79784,79924..80044,80325..80468,81105..81203,81589..81635,81900..81991,82082..82137,82210..82337,83566..83688))
location: region:75831-83688:-1
so has part: feature:83566-83688:-1:exon
so has part: feature:82210-82337:-1:exon
so has part: feature:82082-82137:-1:exon
so has part: feature:81900-81991:-1:exon
so has part: feature:81589-81635:-1:exon
so has part: feature:81105-81203:-1:exon
so has part: feature:80325-80468:-1:exon
so has part: feature:79924-80044:-1:exon
so has part: feature:79660-79784:-1:exon
so has part: feature:79116-79176:-1:exon
so has part: feature:78282-78372:-1:exon
so has part: feature:77865-77958:-1:exon
so has part: feature:77690-77757:-1:exon
so has part: feature:77518-77599:-1:exon
so has part: feature:76472-76556:-1:exon
so has part: feature:75831-75965:-1:exon

XP_032939316.1
type: Protein
SIO_000068: ncbiprotein

position:75831:-1
position: 75831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:83688:-1
position: 83688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83566-83688:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:82210-82337:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:82082-82137:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:81900-81991:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:81589-81635:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:81105-81203:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:80325-80468:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:79924-80044:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:79660-79784:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:79116-79176:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:78282-78372:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:77865-77958:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:77690-77757:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:77518-77599:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:76472-76556:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:75831-75965:-1:exon

SP7
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: SP7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(86737..87726)
location: region:86737-87726:-1
so has part: feature:86737-87726:-1:exon
subclass of: SO_0000010

117009172
type: Gene
SIO_000068: ncbigene

position:86737:-1
position: 86737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:87726:-1
position: 87726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:86737-87726:-1:exon

SP7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: SP7
product: Sp7 transcription factor
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 42% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_033083416.1
SIO_010081: SP7
subclass of: SO_0000673
so part of: SP7
location: complement(86737..87726)
location: region:86737-87726:-1
so has part: feature:86737-87726:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:86737-87726:-1:exon

SP7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: SP7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription factor Sp7
translation: MGDSYAAAFPSAPGLLSPSASPQASPGPYGPDYGPFGHPFPAPSGAQEVLGAPVVVAAKGHPPGECLPGVYPSLEMPHPYGSWYKGGIGGGLPGGSGPAAPSWWDVHPNGGWLGGPAGAEGLQGSLQGQPTLSPPLPTYGSDFGALNPPPYSNAPAAPPTPKPTPGETPKGPRGGSLGGRPACDCPNCQELERLGGPGGSRRKPVHSCHIPGCGKVYGKASHLKAHLRWHTGERPFVCNWLFCGKRFTRSDELERHVRTHTREKKFTCLLCSKRFTRSDHLSKHQKTHADPGPPKPPPGAEQPPASPRPPPASPGKDGGSPEAGSLLEI
SIO_010081: SP7
subclass of: SO_0000673
so part of: SP7
location: complement(86737..87726)
location: region:86737-87726:-1
so has part: feature:86737-87726:-1:exon

XP_032939307.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:86737-87726:-1:exon

SP1
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: SP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 96064..111055
location: region:96064-111055:1
so has part: feature:96064-111055:1:exon
subclass of: SO_0000010

117009117
type: Gene
SIO_000068: ncbigene

position:96064:1
position: 96064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:111055:1
position: 111055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:96064-111055:1:exon

SP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: SP1
product: Sp1 transcription factor, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083319.2
SIO_010081: SP1
subclass of: SO_0000673
so part of: SP1
location: join(96064..96098,97127..97221,97862..99365,108473..108641,108910..109109,109932..111055)
location: region:96064-111055:1
so has part: feature:96064-96098:1:exon
so has part: feature:97127-97221:1:exon
so has part: feature:97862-99365:1:exon
so has part: feature:108473-108641:1:exon
so has part: feature:108910-109109:1:exon
so has part: feature:109932-111055:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:96064-96098:1:exon

position:96098:1
position: 96098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:97127-97221:1:exon

position:97127:1
position: 97127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:97221:1
position: 97221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:97862-99365:1:exon

position:97862:1
position: 97862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:99365:1
position: 99365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:108473-108641:1:exon

position:108473:1
position: 108473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:108641:1
position: 108641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:108910-109109:1:exon

position:108910:1
position: 108910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:109109:1
position: 109109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:109932-111055:1:exon

position:109932:1
position: 109932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: SP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription factor Sp1 isoform X1
translation: MSDQESTEEMSAVKPDKGEGDASSTSSAGGGEAQESQPSPLALLAATCSRIESPNENSNSSQGQQGGSGELDLNAAAAQLTQSANGWQIISAGSSTPTGSKEPGSNGSNGGDASKSRPVSTGPYVVTSASGLQNQQVLTGLPGVIPNIQYQVIPQFQTIDGQQLQFATTPAQVNVQQDASGQLQIIPGSNQQIITSRAGGSNLIAMPNLLQQAVPIQGVGLANNSLSGQTQYVANVPVALNGNITLLPVNSVAASLAPTSQTGTLSSSGSPDSSSQPATSGAASSSGSTATSQASSGAFFTNANSYSTTTTTSNVGVMNFSTSATVGTNVQAQTPQRASSVPSSDSLQSPVSGVALQPGQQKEGDQSQQSQQQQQQQQILIQPQLVQGGQTIQALQTTPLSGQTFATQAISQDTLQNLQLQAVPNSGPIIIRTPTVGPNGQVSWQTIQLQNLQVQNPQAQTITLAPMQGVSLGQTGSTSTTLTPIASLPSGTVTVNAAQLSSVPGLQTINLSALGASGIQVHQLQGLPLAIANAPGEHGAQLGLHGGSGDALGDESAAVEEGETSPDPQPQQGRKTRREACTCPYCKEGEGRSSGDPGKKKQHICHVPGCGKVYGKTSHLRAHLRWHTGERPFICTWVLCGKRFTRSDELQRHKRTHTGEKKFACPECPKRFMRSDHLSKHIKTHQNKKGGAAGVAMNVSAVPMDTAAAAEGNGGATPSALIATNMVAMEAICPEGIARLASSGINVMQVADLQSINISGNGF
SIO_010081: SP1
subclass of: SO_0000673
so part of: SP1
location: join(96092..96098,97127..97221,97862..99365,108473..108641,108910..109109,109932..110248)
location: region:96092-110248:1
so has part: feature:96092-96098:1:exon
so has part: feature:97127-97221:1:exon
so has part: feature:97862-99365:1:exon
so has part: feature:108473-108641:1:exon
so has part: feature:108910-109109:1:exon
so has part: feature:109932-110248:1:exon

XP_032939210.1
type: Protein
SIO_000068: ncbiprotein

position:96092:1
position: 96092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:110248:1
position: 110248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:96092-96098:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:97127-97221:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:97862-99365:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:108473-108641:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:108910-109109:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:109932-110248:1:exon

SP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: SP1
product: Sp1 transcription factor, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083320.2
SIO_010081: SP1
subclass of: SO_0000673
so part of: SP1
location: join(96588..96712,97127..97221,97862..99365,108473..108641,108910..109109,109932..111055)
location: region:96588-111055:1
so has part: feature:96588-96712:1:exon
so has part: feature:97127-97221:1:exon
so has part: feature:97862-99365:1:exon
so has part: feature:108473-108641:1:exon
so has part: feature:108910-109109:1:exon
so has part: feature:109932-111055:1:exon

position:96588:1
position: 96588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:96588-96712:1:exon

position:96712:1
position: 96712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:97127-97221:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:97862-99365:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:108473-108641:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:108910-109109:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:109932-111055:1:exon

SP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: SP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription factor Sp1 isoform X2
translation: MSAVKPDKGEGDASSTSSAGGGEAQESQPSPLALLAATCSRIESPNENSNSSQGQQGGSGELDLNAAAAQLTQSANGWQIISAGSSTPTGSKEPGSNGSNGGDASKSRPVSTGPYVVTSASGLQNQQVLTGLPGVIPNIQYQVIPQFQTIDGQQLQFATTPAQVNVQQDASGQLQIIPGSNQQIITSRAGGSNLIAMPNLLQQAVPIQGVGLANNSLSGQTQYVANVPVALNGNITLLPVNSVAASLAPTSQTGTLSSSGSPDSSSQPATSGAASSSGSTATSQASSGAFFTNANSYSTTTTTSNVGVMNFSTSATVGTNVQAQTPQRASSVPSSDSLQSPVSGVALQPGQQKEGDQSQQSQQQQQQQQILIQPQLVQGGQTIQALQTTPLSGQTFATQAISQDTLQNLQLQAVPNSGPIIIRTPTVGPNGQVSWQTIQLQNLQVQNPQAQTITLAPMQGVSLGQTGSTSTTLTPIASLPSGTVTVNAAQLSSVPGLQTINLSALGASGIQVHQLQGLPLAIANAPGEHGAQLGLHGGSGDALGDESAAVEEGETSPDPQPQQGRKTRREACTCPYCKEGEGRSSGDPGKKKQHICHVPGCGKVYGKTSHLRAHLRWHTGERPFICTWVLCGKRFTRSDELQRHKRTHTGEKKFACPECPKRFMRSDHLSKHIKTHQNKKGGAAGVAMNVSAVPMDTAAAAEGNGGATPSALIATNMVAMEAICPEGIARLASSGINVMQVADLQSINISGNGF
SIO_010081: SP1
subclass of: SO_0000673
so part of: SP1
location: join(97147..97221,97862..99365,108473..108641,108910..109109,109932..110248)
location: region:97147-110248:1
so has part: feature:97147-97221:1:exon
so has part: feature:97862-99365:1:exon
so has part: feature:108473-108641:1:exon
so has part: feature:108910-109109:1:exon
so has part: feature:109932-110248:1:exon

XP_032939211.1
type: Protein
SIO_000068: ncbiprotein

position:97147:1
position: 97147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97147-97221:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:97862-99365:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:108473-108641:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:108910-109109:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:109932-110248:1:exon

LOC117009118
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: LOC117009118
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(99394..101588)
location: region:99394-101588:-1
so has part: feature:99394-101588:-1:exon
subclass of: SO_0000010

117009118
type: Gene
SIO_000068: ncbigene

position:99394:-1
position: 99394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:101588:-1
position: 101588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99394-101588:-1:exon

LOC117009118
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: LOC117009118
product: TSC22 domain family protein 4-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_033083321.1
SIO_010081: LOC117009118
subclass of: SO_0000673
so part of: LOC117009118
location: complement(join(99394..100810,100849..101588))
location: region:99394-101588:-1
so has part: feature:100849-101588:-1:exon
so has part: feature:99394-100810:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:100849-101588:-1:exon

position:100849:-1
position: 100849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:99394-100810:-1:exon

position:100810:-1
position: 100810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117009118
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: LOC117009118
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: TSC22 domain family protein 4-like
translation: MPPLVVTDLPSREEESLGASLSTDTESESWALHHTQQQKSLSLRDLPRCCFLPEGFLPCQKSGENLTGTRAKGLGATAPHPGVQEGTEPPAELGKGQDRQCCQPRWQLGPPHPAWAPPPSPGMEHAAGSKENQRGLIFHLPLPGSTAASPAPKIPPNSSPGAESSSTRGGLENTQGFGKCWEQTPPSNPQCRARSWRDAGLGGQRDPLPRLRDTAREKLIQPGAKSSTGRVPGAVLATALPVSSQEPPGPSPKNPSEPCPGFSFQMSPCHSASVTSWGRGQGQEAPALPLPPLAGNSSPRAGSCRAKKKERRRRRERRRRRLRRMGGL
SIO_010081: LOC117009118
subclass of: SO_0000673
so part of: LOC117009118
location: complement(join(100429..100810,100849..101453))
location: region:100429-101453:-1
so has part: feature:100849-101453:-1:exon
so has part: feature:100429-100810:-1:exon

XP_032939212.1
type: Protein
SIO_000068: ncbiprotein

position:100429:-1
position: 100429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:101453:-1
position: 101453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:100849-101453:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:100429-100810:-1:exon

AMHR2
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: AMHR2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 114092..119600
location: region:114092-119600:1
so has part: feature:114092-119600:1:exon
subclass of: SO_0000010

117008943
type: Gene
SIO_000068: ncbigene

position:114092:1
position: 114092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:119600:1
position: 119600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:114092-119600:1:exon

AMHR2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: AMHR2
product: anti-Mullerian hormone receptor type 2
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 51% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_033083083.1
SIO_010081: AMHR2
subclass of: SO_0000673
so part of: AMHR2
location: join(114092..114104,114181..114356,115976..116156,116479..116589,117122..117346,117849..117963,118046..118206,118401..118548,118879..119015,119248..119411,119570..119600)
location: region:114092-119600:1
so has part: feature:114092-114104:1:exon
so has part: feature:114181-114356:1:exon
so has part: feature:115976-116156:1:exon
so has part: feature:116479-116589:1:exon
so has part: feature:117122-117346:1:exon
so has part: feature:117849-117963:1:exon
so has part: feature:118046-118206:1:exon
so has part: feature:118401-118548:1:exon
so has part: feature:118879-119015:1:exon
so has part: feature:119248-119411:1:exon
so has part: feature:119570-119600:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:114092-114104:1:exon

position:114104:1
position: 114104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:114181-114356:1:exon

position:114181:1
position: 114181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:114356:1
position: 114356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:115976-116156:1:exon

position:115976:1
position: 115976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:116156:1
position: 116156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:116479-116589:1:exon

position:116479:1
position: 116479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:116589:1
position: 116589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:117122-117346:1:exon

position:117122:1
position: 117122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:117346:1
position: 117346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:117849-117963:1:exon

position:117849:1
position: 117849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:117963:1
position: 117963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:118046-118206:1:exon

position:118046:1
position: 118046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:118206:1
position: 118206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:118401-118548:1:exon

position:118401:1
position: 118401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:118548:1
position: 118548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:118879-119015:1:exon

position:118879:1
position: 118879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:119015:1
position: 119015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:119248-119411:1:exon

position:119248:1
position: 119248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:119411:1
position: 119411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:119570-119600:1:exon

position:119570:1
position: 119570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AMHR2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: AMHR2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: anti-Muellerian hormone type-2 receptor
translation: MGRPGPQNLTCVSYKHPSVRGALGVAGGAAAGAVRCPPGQCCVGIWNRSHALVQGETPETGPGRDTWRVREAAIPRCPLQRSGGSVSPRSLSPAPGQGGSAGTLWLWGASPLLLILLTCLGILGLRWTRARTGQTPRGGRRIGVPSEPPSPDLPALHFLQVLQSGRFSAVWRGTLRQRPVAIKAFAAGAGRRFAAERAVHALPLMEHENVARLLDTRAAGPRARGGLLVLQLYPAGSLRHFLGQHVGTWAGSVRLALSLARGLAFLHQELWRDGLYKPSVVHRDLSSQNVLVREDGTCAIGDFGLALALPPRAQDSAGARHAVTIRKAGTQRYLAPEILDESLDLRAWGRALRQADVYALALLLWEILSRCQALSPGAPVPPFRLAYEAELGSSPTGAQLRRLAADERRRPLIPPAWHRAPQPGGALPELLEDCWDPDPEARLSAERALQRLQRLAAGPAPAPGDAAPRQVRAGKLRPRPRGGAPP
SIO_010081: AMHR2
subclass of: SO_0000673
so part of: AMHR2
location: join(114092..114104,114181..114356,115976..116156,116479..116589,117122..117346,117849..117963,118046..118206,118401..118548,118879..119015,119248..119411,119570..119600)
location: region:114092-119600:1
so has part: feature:114092-114104:1:exon
so has part: feature:114181-114356:1:exon
so has part: feature:115976-116156:1:exon
so has part: feature:116479-116589:1:exon
so has part: feature:117122-117346:1:exon
so has part: feature:117849-117963:1:exon
so has part: feature:118046-118206:1:exon
so has part: feature:118401-118548:1:exon
so has part: feature:118879-119015:1:exon
so has part: feature:119248-119411:1:exon
so has part: feature:119570-119600:1:exon

XP_032938974.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:114092-114104:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:114181-114356:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:115976-116156:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:116479-116589:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:117122-117346:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:117849-117963:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:118046-118206:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:118401-118548:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:118879-119015:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:119248-119411:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:119570-119600:1:exon

LOC117009166
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: LOC117009166
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 119608..120139
location: region:119608-120139:1
so has part: feature:119608-120139:1:exon
subclass of: SO_0000011

117009166
type: Gene
SIO_000068: ncbigene

position:119608:1
position: 119608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:120139:1
position: 120139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:119608-120139:1:exon

LOC117009166
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 91951
nc RNA class: lncRNA
gene: LOC117009166
product: uncharacterized LOC117009166
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_004420432.1
SIO_010081: LOC117009166
subclass of: SO_0000673
so part of: LOC117009166
location: join(119608..119675,119969..120005,120102..120139)
location: region:119608-120139:1
so has part: feature:119608-119675:1:exon
so has part: feature:119969-120005:1:exon
so has part: feature:120102-120139:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:119608-119675:1:exon

position:119675:1
position: 119675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:119969-120005:1:exon

position:119969:1
position: 119969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:120005:1
position: 120005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:120102-120139:1:exon

position:120102:1
position: 120102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PCBP2
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 121733..138006
location: region:121733-138006:1
so has part: feature:121733-138006:1:exon
subclass of: SO_0000010

117009127
type: Gene
SIO_000068: ncbigene

position:121733:1
position: 121733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:138006:1
position: 138006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:121733-138006:1:exon

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083338.2
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: join(121733..121801,123519..123636,123948..123971,124078..124110,125784..125900,126988..127119,127642..127770,128171..128245,129489..129575,129750..129815,130673..130714,131610..131682,132070..132108,132898..132950,134644..134813,137430..138006)
location: region:121733-138006:1
so has part: feature:121733-121801:1:exon
so has part: feature:123519-123636:1:exon
so has part: feature:123948-123971:1:exon
so has part: feature:124078-124110:1:exon
so has part: feature:125784-125900:1:exon
so has part: feature:126988-127119:1:exon
so has part: feature:127642-127770:1:exon
so has part: feature:128171-128245:1:exon
so has part: feature:129489-129575:1:exon
so has part: feature:129750-129815:1:exon
so has part: feature:130673-130714:1:exon
so has part: feature:131610-131682:1:exon
so has part: feature:132070-132108:1:exon
so has part: feature:132898-132950:1:exon
so has part: feature:134644-134813:1:exon
so has part: feature:137430-138006:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:121733-121801:1:exon

position:121801:1
position: 121801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:123519-123636:1:exon

position:123519:1
position: 123519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:123636:1
position: 123636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:123948-123971:1:exon

position:123948:1
position: 123948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:123971:1
position: 123971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:124078-124110:1:exon

position:124078:1
position: 124078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:124110:1
position: 124110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:125784-125900:1:exon

position:125784:1
position: 125784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:125900:1
position: 125900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:126988-127119:1:exon

position:126988:1
position: 126988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:127119:1
position: 127119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:127642-127770:1:exon

position:127642:1
position: 127642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:127770:1
position: 127770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:128171-128245:1:exon

position:128171:1
position: 128171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:128245:1
position: 128245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:129489-129575:1:exon

position:129489:1
position: 129489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:129575:1
position: 129575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:129750-129815:1:exon

position:129750:1
position: 129750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:129815:1
position: 129815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:130673-130714:1:exon

position:130673:1
position: 130673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:130714:1
position: 130714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:131610-131682:1:exon

position:131610:1
position: 131610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:131682:1
position: 131682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:132070-132108:1:exon

position:132070:1
position: 132070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:132108:1
position: 132108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:132898-132950:1:exon

position:132898:1
position: 132898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:132950:1
position: 132950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:134644-134813:1:exon

position:134644:1
position: 134644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:134813:1
position: 134813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:137430-138006:1:exon

position:137430:1
position: 137430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083339.2
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: join(121733..121801,123519..123636,123948..123971,124078..124110,125784..125900,126988..127119,127642..127770,128171..128245,129489..129575,129750..129815,130673..130714,131610..131682,132898..132950,134644..134813,137430..138006)
location: region:121733-138006:1
so has part: feature:121733-121801:1:exon
so has part: feature:123519-123636:1:exon
so has part: feature:123948-123971:1:exon
so has part: feature:124078-124110:1:exon
so has part: feature:125784-125900:1:exon
so has part: feature:126988-127119:1:exon
so has part: feature:127642-127770:1:exon
so has part: feature:128171-128245:1:exon
so has part: feature:129489-129575:1:exon
so has part: feature:129750-129815:1:exon
so has part: feature:130673-130714:1:exon
so has part: feature:131610-131682:1:exon
so has part: feature:132898-132950:1:exon
so has part: feature:134644-134813:1:exon
so has part: feature:137430-138006:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:121733-121801:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:123519-123636:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:123948-123971:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:124078-124110:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:125784-125900:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:126988-127119:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:127642-127770:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:128171-128245:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:129489-129575:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:129750-129815:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:130673-130714:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:131610-131682:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:132898-132950:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:134644-134813:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:137430-138006:1:exon

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083340.2
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: join(121733..121801,123519..123636,123948..123971,124078..124110,125784..125900,126988..127119,127642..127770,128171..128245,129489..129575,130673..130714,131610..131682,132070..132108,132898..132950,134644..134813,137430..138006)
location: region:121733-138006:1
so has part: feature:121733-121801:1:exon
so has part: feature:123519-123636:1:exon
so has part: feature:123948-123971:1:exon
so has part: feature:124078-124110:1:exon
so has part: feature:125784-125900:1:exon
so has part: feature:126988-127119:1:exon
so has part: feature:127642-127770:1:exon
so has part: feature:128171-128245:1:exon
so has part: feature:129489-129575:1:exon
so has part: feature:130673-130714:1:exon
so has part: feature:131610-131682:1:exon
so has part: feature:132070-132108:1:exon
so has part: feature:132898-132950:1:exon
so has part: feature:134644-134813:1:exon
so has part: feature:137430-138006:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:121733-121801:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:123519-123636:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:123948-123971:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:124078-124110:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:125784-125900:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:126988-127119:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:127642-127770:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:128171-128245:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:129489-129575:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:130673-130714:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:131610-131682:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:132070-132108:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:132898-132950:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:134644-134813:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:137430-138006:1:exon

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X4
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083341.2
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: join(121733..121801,123519..123636,123948..123971,124078..124110,125784..125900,126988..127119,127642..127770,128171..128245,129489..129575,130673..130714,131610..131682,132898..132950,134644..134813,137430..138006)
location: region:121733-138006:1
so has part: feature:121733-121801:1:exon
so has part: feature:123519-123636:1:exon
so has part: feature:123948-123971:1:exon
so has part: feature:124078-124110:1:exon
so has part: feature:125784-125900:1:exon
so has part: feature:126988-127119:1:exon
so has part: feature:127642-127770:1:exon
so has part: feature:128171-128245:1:exon
so has part: feature:129489-129575:1:exon
so has part: feature:130673-130714:1:exon
so has part: feature:131610-131682:1:exon
so has part: feature:132898-132950:1:exon
so has part: feature:134644-134813:1:exon
so has part: feature:137430-138006:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:121733-121801:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:123519-123636:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:123948-123971:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:124078-124110:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:125784-125900:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:126988-127119:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:127642-127770:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:128171-128245:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:129489-129575:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:130673-130714:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:131610-131682:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:132898-132950:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:134644-134813:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:137430-138006:1:exon

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X5
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083342.2
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: join(121733..121801,123519..123636,123948..123971,124078..124110,125784..125900,126988..127119,127642..127770,128171..128245,129489..129575,131610..131682,132070..132108,132898..132950,134644..134813,137430..138006)
location: region:121733-138006:1
so has part: feature:121733-121801:1:exon
so has part: feature:123519-123636:1:exon
so has part: feature:123948-123971:1:exon
so has part: feature:124078-124110:1:exon
so has part: feature:125784-125900:1:exon
so has part: feature:126988-127119:1:exon
so has part: feature:127642-127770:1:exon
so has part: feature:128171-128245:1:exon
so has part: feature:129489-129575:1:exon
so has part: feature:131610-131682:1:exon
so has part: feature:132070-132108:1:exon
so has part: feature:132898-132950:1:exon
so has part: feature:134644-134813:1:exon
so has part: feature:137430-138006:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:121733-121801:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:123519-123636:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:123948-123971:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:124078-124110:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:125784-125900:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:126988-127119:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:127642-127770:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:128171-128245:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:129489-129575:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:131610-131682:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:132070-132108:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:132898-132950:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:134644-134813:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:137430-138006:1:exon

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X6
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083343.2
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: join(121733..121801,123519..123636,123948..123971,124078..124110,125784..125900,126988..127119,127642..127770,128171..128245,130673..130714,131610..131682,132070..132108,132898..132950,134644..134813,137430..138006)
location: region:121733-138006:1
so has part: feature:121733-121801:1:exon
so has part: feature:123519-123636:1:exon
so has part: feature:123948-123971:1:exon
so has part: feature:124078-124110:1:exon
so has part: feature:125784-125900:1:exon
so has part: feature:126988-127119:1:exon
so has part: feature:127642-127770:1:exon
so has part: feature:128171-128245:1:exon
so has part: feature:130673-130714:1:exon
so has part: feature:131610-131682:1:exon
so has part: feature:132070-132108:1:exon
so has part: feature:132898-132950:1:exon
so has part: feature:134644-134813:1:exon
so has part: feature:137430-138006:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:121733-121801:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:123519-123636:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:123948-123971:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:124078-124110:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:125784-125900:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:126988-127119:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:127642-127770:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:128171-128245:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:130673-130714:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:131610-131682:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:132070-132108:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:132898-132950:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:134644-134813:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:137430-138006:1:exon

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X7
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083344.2
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: join(121733..121801,123519..123636,123948..123971,124078..124110,125784..125900,126988..127119,127642..127770,128171..128245,130673..130714,131610..131682,132898..132950,134644..134813,137430..138006)
location: region:121733-138006:1
so has part: feature:121733-121801:1:exon
so has part: feature:123519-123636:1:exon
so has part: feature:123948-123971:1:exon
so has part: feature:124078-124110:1:exon
so has part: feature:125784-125900:1:exon
so has part: feature:126988-127119:1:exon
so has part: feature:127642-127770:1:exon
so has part: feature:128171-128245:1:exon
so has part: feature:130673-130714:1:exon
so has part: feature:131610-131682:1:exon
so has part: feature:132898-132950:1:exon
so has part: feature:134644-134813:1:exon
so has part: feature:137430-138006:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:121733-121801:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:123519-123636:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:123948-123971:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:124078-124110:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:125784-125900:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:126988-127119:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:127642-127770:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:128171-128245:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:130673-130714:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:131610-131682:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:132898-132950:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:134644-134813:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:137430-138006:1:exon

PCBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: PCBP2
product: poly(rC) binding protein 2, transcript variant X8
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083345.2
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: join(121733..121801,123519..123636,123948..123971,124078..124110,125784..125900,126988..127119,127642..127770,128171..128245,131610..131682,132070..132108,132898..132950,134644..134813,137430..138006)
location: region:121733-138006:1
so has part: feature:121733-121801:1:exon
so has part: feature:123519-123636:1:exon
so has part: feature:123948-123971:1:exon
so has part: feature:124078-124110:1:exon
so has part: feature:125784-125900:1:exon
so has part: feature:126988-127119:1:exon
so has part: feature:127642-127770:1:exon
so has part: feature:128171-128245:1:exon
so has part: feature:131610-131682:1:exon
so has part: feature:132070-132108:1:exon
so has part: feature:132898-132950:1:exon
so has part: feature:134644-134813:1:exon
so has part: feature:137430-138006:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:121733-121801:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:123519-123636:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:123948-123971:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:124078-124110:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:125784-125900:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:126988-127119:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:127642-127770:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:128171-128245:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:131610-131682:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:132070-132108:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:132898-132950:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:134644-134813:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:137430-138006:1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X1
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSSGSASYPHTAPSMCLNSDLEGPPQEATRQPLHGNELGPIPAWAAVLPAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHGNTGFSGVDSSSAEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: join(123568..123636,123948..123971,124078..124110,125784..125900,126988..127119,127642..127770,128171..128245,129489..129575,129750..129815,130673..130714,131610..131682,132070..132108,132898..132950,134644..134813,137430..137466)
location: region:123568-137466:1
so has part: feature:123568-123636:1:exon
so has part: feature:123948-123971:1:exon
so has part: feature:124078-124110:1:exon
so has part: feature:125784-125900:1:exon
so has part: feature:126988-127119:1:exon
so has part: feature:127642-127770:1:exon
so has part: feature:128171-128245:1:exon
so has part: feature:129489-129575:1:exon
so has part: feature:129750-129815:1:exon
so has part: feature:130673-130714:1:exon
so has part: feature:131610-131682:1:exon
so has part: feature:132070-132108:1:exon
so has part: feature:132898-132950:1:exon
so has part: feature:134644-134813:1:exon
so has part: feature:137430-137466:1:exon

XP_032939229.1
type: Protein
SIO_000068: ncbiprotein

position:123568:1
position: 123568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:137466:1
position: 137466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:123568-123636:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:123948-123971:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:124078-124110:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:125784-125900:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:126988-127119:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:127642-127770:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:128171-128245:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:129489-129575:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:129750-129815:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:130673-130714:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:131610-131682:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:132070-132108:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:132898-132950:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:134644-134813:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:137430-137466:1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X2
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSSGSASYPHTAPSMCLNSDLEGPPQEATRQPLHGNELGPIPAWAAVLPAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHGNTGFSGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: join(123568..123636,123948..123971,124078..124110,125784..125900,126988..127119,127642..127770,128171..128245,129489..129575,129750..129815,130673..130714,131610..131682,132898..132950,134644..134813,137430..137466)
location: region:123568-137466:1
so has part: feature:123568-123636:1:exon
so has part: feature:123948-123971:1:exon
so has part: feature:124078-124110:1:exon
so has part: feature:125784-125900:1:exon
so has part: feature:126988-127119:1:exon
so has part: feature:127642-127770:1:exon
so has part: feature:128171-128245:1:exon
so has part: feature:129489-129575:1:exon
so has part: feature:129750-129815:1:exon
so has part: feature:130673-130714:1:exon
so has part: feature:131610-131682:1:exon
so has part: feature:132898-132950:1:exon
so has part: feature:134644-134813:1:exon
so has part: feature:137430-137466:1:exon

XP_032939230.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:123568-123636:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:123948-123971:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:124078-124110:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:125784-125900:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:126988-127119:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:127642-127770:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:128171-128245:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:129489-129575:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:129750-129815:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:130673-130714:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:131610-131682:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:132898-132950:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:134644-134813:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:137430-137466:1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X3
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSSGSASYPHTAPSMCLNSDLEGPPQEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHGNTGFSGVDSSSAEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: join(123568..123636,123948..123971,124078..124110,125784..125900,126988..127119,127642..127770,128171..128245,129489..129575,130673..130714,131610..131682,132070..132108,132898..132950,134644..134813,137430..137466)
location: region:123568-137466:1
so has part: feature:123568-123636:1:exon
so has part: feature:123948-123971:1:exon
so has part: feature:124078-124110:1:exon
so has part: feature:125784-125900:1:exon
so has part: feature:126988-127119:1:exon
so has part: feature:127642-127770:1:exon
so has part: feature:128171-128245:1:exon
so has part: feature:129489-129575:1:exon
so has part: feature:130673-130714:1:exon
so has part: feature:131610-131682:1:exon
so has part: feature:132070-132108:1:exon
so has part: feature:132898-132950:1:exon
so has part: feature:134644-134813:1:exon
so has part: feature:137430-137466:1:exon

XP_032939231.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:123568-123636:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:123948-123971:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:124078-124110:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:125784-125900:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:126988-127119:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:127642-127770:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:128171-128245:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:129489-129575:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:130673-130714:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:131610-131682:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:132070-132108:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:132898-132950:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:134644-134813:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:137430-137466:1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X4
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSSGSASYPHTAPSMCLNSDLEGPPQEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHGNTGFSGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: join(123568..123636,123948..123971,124078..124110,125784..125900,126988..127119,127642..127770,128171..128245,129489..129575,130673..130714,131610..131682,132898..132950,134644..134813,137430..137466)
location: region:123568-137466:1
so has part: feature:123568-123636:1:exon
so has part: feature:123948-123971:1:exon
so has part: feature:124078-124110:1:exon
so has part: feature:125784-125900:1:exon
so has part: feature:126988-127119:1:exon
so has part: feature:127642-127770:1:exon
so has part: feature:128171-128245:1:exon
so has part: feature:129489-129575:1:exon
so has part: feature:130673-130714:1:exon
so has part: feature:131610-131682:1:exon
so has part: feature:132898-132950:1:exon
so has part: feature:134644-134813:1:exon
so has part: feature:137430-137466:1:exon

XP_032939232.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:123568-123636:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:123948-123971:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:124078-124110:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:125784-125900:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:126988-127119:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:127642-127770:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:128171-128245:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:129489-129575:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:130673-130714:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:131610-131682:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:132898-132950:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:134644-134813:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:137430-137466:1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X5
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSSGSASYPHTAPSMCLNSDLEGPPQELTKLHQLAMQQSHFPMSHGNTGFSGVDSSSAEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: join(123568..123636,123948..123971,124078..124110,125784..125900,126988..127119,127642..127770,128171..128245,129489..129575,131610..131682,132070..132108,132898..132950,134644..134813,137430..137466)
location: region:123568-137466:1
so has part: feature:123568-123636:1:exon
so has part: feature:123948-123971:1:exon
so has part: feature:124078-124110:1:exon
so has part: feature:125784-125900:1:exon
so has part: feature:126988-127119:1:exon
so has part: feature:127642-127770:1:exon
so has part: feature:128171-128245:1:exon
so has part: feature:129489-129575:1:exon
so has part: feature:131610-131682:1:exon
so has part: feature:132070-132108:1:exon
so has part: feature:132898-132950:1:exon
so has part: feature:134644-134813:1:exon
so has part: feature:137430-137466:1:exon

XP_032939233.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:123568-123636:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:123948-123971:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:124078-124110:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:125784-125900:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:126988-127119:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:127642-127770:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:128171-128245:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:129489-129575:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:131610-131682:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:132070-132108:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:132898-132950:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:134644-134813:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:137430-137466:1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X6
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHGNTGFSGVDSSSAEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: join(123568..123636,123948..123971,124078..124110,125784..125900,126988..127119,127642..127770,128171..128245,130673..130714,131610..131682,132070..132108,132898..132950,134644..134813,137430..137466)
location: region:123568-137466:1
so has part: feature:123568-123636:1:exon
so has part: feature:123948-123971:1:exon
so has part: feature:124078-124110:1:exon
so has part: feature:125784-125900:1:exon
so has part: feature:126988-127119:1:exon
so has part: feature:127642-127770:1:exon
so has part: feature:128171-128245:1:exon
so has part: feature:130673-130714:1:exon
so has part: feature:131610-131682:1:exon
so has part: feature:132070-132108:1:exon
so has part: feature:132898-132950:1:exon
so has part: feature:134644-134813:1:exon
so has part: feature:137430-137466:1:exon

XP_032939234.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:123568-123636:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:123948-123971:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:124078-124110:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:125784-125900:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:126988-127119:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:127642-127770:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:128171-128245:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:130673-130714:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:131610-131682:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:132070-132108:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:132898-132950:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:134644-134813:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:137430-137466:1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X7
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHGNTGFSGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: join(123568..123636,123948..123971,124078..124110,125784..125900,126988..127119,127642..127770,128171..128245,130673..130714,131610..131682,132898..132950,134644..134813,137430..137466)
location: region:123568-137466:1
so has part: feature:123568-123636:1:exon
so has part: feature:123948-123971:1:exon
so has part: feature:124078-124110:1:exon
so has part: feature:125784-125900:1:exon
so has part: feature:126988-127119:1:exon
so has part: feature:127642-127770:1:exon
so has part: feature:128171-128245:1:exon
so has part: feature:130673-130714:1:exon
so has part: feature:131610-131682:1:exon
so has part: feature:132898-132950:1:exon
so has part: feature:134644-134813:1:exon
so has part: feature:137430-137466:1:exon

XP_032939235.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:123568-123636:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:123948-123971:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:124078-124110:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:125784-125900:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:126988-127119:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:127642-127770:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:128171-128245:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:130673-130714:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:131610-131682:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:132898-132950:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:134644-134813:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:137430-137466:1:exon

PCBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: PCBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(rC)-binding protein 2 isoform X8
translation: MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQLTKLHQLAMQQSHFPMSHGNTGFSGVDSSSAEVKGYWGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
SIO_010081: PCBP2
subclass of: SO_0000673
so part of: PCBP2
location: join(123568..123636,123948..123971,124078..124110,125784..125900,126988..127119,127642..127770,128171..128245,131610..131682,132070..132108,132898..132950,134644..134813,137430..137466)
location: region:123568-137466:1
so has part: feature:123568-123636:1:exon
so has part: feature:123948-123971:1:exon
so has part: feature:124078-124110:1:exon
so has part: feature:125784-125900:1:exon
so has part: feature:126988-127119:1:exon
so has part: feature:127642-127770:1:exon
so has part: feature:128171-128245:1:exon
so has part: feature:131610-131682:1:exon
so has part: feature:132070-132108:1:exon
so has part: feature:132898-132950:1:exon
so has part: feature:134644-134813:1:exon
so has part: feature:137430-137466:1:exon

XP_032939236.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:123568-123636:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:123948-123971:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:124078-124110:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:125784-125900:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:126988-127119:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:127642-127770:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:128171-128245:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:131610-131682:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:132070-132108:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:132898-132950:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:134644-134813:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:137430-137466:1:exon

MAP3K12
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: MAP3K12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(138955..152620)
location: region:138955-152620:-1
so has part: feature:138955-152620:-1:exon
subclass of: SO_0000010

117009126
type: Gene
SIO_000068: ncbigene

position:138955:-1
position: 138955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:152620:-1
position: 152620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:138955-152620:-1:exon

MAP3K12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: MAP3K12
product: mitogen-activated protein kinase kinase kinase 12
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_033083337.2
SIO_010081: MAP3K12
subclass of: SO_0000673
so part of: MAP3K12
location: complement(join(138955..139082,139878..140130,140226..140296,140468..140906,141440..141577,142433..142549,143186..143295,143436..143544,145711..145869,146088..146246,149237..149428,150562..150745,152258..152620))
location: region:138955-152620:-1
so has part: feature:152258-152620:-1:exon
so has part: feature:150562-150745:-1:exon
so has part: feature:149237-149428:-1:exon
so has part: feature:146088-146246:-1:exon
so has part: feature:145711-145869:-1:exon
so has part: feature:143436-143544:-1:exon
so has part: feature:143186-143295:-1:exon
so has part: feature:142433-142549:-1:exon
so has part: feature:141440-141577:-1:exon
so has part: feature:140468-140906:-1:exon
so has part: feature:140226-140296:-1:exon
so has part: feature:139878-140130:-1:exon
so has part: feature:138955-139082:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:152258-152620:-1:exon

position:152258:-1
position: 152258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:150562-150745:-1:exon

position:150562:-1
position: 150562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:150745:-1
position: 150745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:149237-149428:-1:exon

position:149237:-1
position: 149237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:149428:-1
position: 149428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:146088-146246:-1:exon

position:146088:-1
position: 146088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:146246:-1
position: 146246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:145711-145869:-1:exon

position:145711:-1
position: 145711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:145869:-1
position: 145869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:143436-143544:-1:exon

position:143436:-1
position: 143436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:143544:-1
position: 143544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:143186-143295:-1:exon

position:143186:-1
position: 143186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:143295:-1
position: 143295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:142433-142549:-1:exon

position:142433:-1
position: 142433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:142549:-1
position: 142549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:141440-141577:-1:exon

position:141440:-1
position: 141440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:141577:-1
position: 141577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:140468-140906:-1:exon

position:140468:-1
position: 140468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:140906:-1
position: 140906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:140226-140296:-1:exon

position:140226:-1
position: 140226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:140296:-1
position: 140296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:139878-140130:-1:exon

position:139878:-1
position: 139878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:140130:-1
position: 140130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:138955-139082:-1:exon

position:139082:-1
position: 139082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MAP3K12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: MAP3K12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mitogen-activated protein kinase kinase kinase 12
translation: MACLHETRTPSPSLALPSDGTPEQELTPTQCVLRDVLPAPSAPPEAWPRRGGPRPPELGPEAAGPLAADAAHLRCQAGGGFLEGLFGCLKPVWTMIGKAYAAEHKHPPEDPWEVPFEEILDLQWVGSGAQGAVFLGRFHGEEVAVKKVRDLKETDIKHLRKLKHPNIITFKGVCTQAPCYCIIMEFCAQGQLYEVLRAGRKVTPSLLVDWSMGIAGGMNYLHLHKIIHRDLKSPNMLITYDDVVKISDFGTSKELIDKSTKMSFAGTVAWMAPEVIRNEPVSEKVDIWSFGVVLWELLTGEIPYKDVDSSAIIWGVGSNSLHLPVPSSCPDGFKVLLRQCWNSKPRNRPSFRQILLHLDIASADVLSTPQETYFKSQAEWREEVKLHFEKIKSEGTCLHRLEEELINRRREELRHALDIREHYERKLERANNLYMELSALMLQLELKEKELLRREQALEKRYPGLFKPRVPRGLLHGNAVETLIKKRNVPQKLSPHGKRPDILKPEVLLPKLDAAMTQVALPGCPKGPPSPGRSRRAKGRHRKAGPRGGCGEPGPEAGTPRGPPATAASPDILGGTLEAAGAPPAAVPDVGPEGAAGSPGSPPPQPPTPGEPERESGAGRGGKGGAGQHLTPAALLYRAAVTRGQKRGVSSEEEEGEVDSEVELPLRQRWPPGMSKRQSLSTFSSENFSDGDGDEGHTSEPSHSATPDVGSTNTDERPDDRSEDLLSQGSEIPLDAAPPEGPGRRHGGLSPTKVSEDSDCDSAELDHSGSGEGPPRPTAPPGL
SIO_010081: MAP3K12
subclass of: SO_0000673
so part of: MAP3K12
location: complement(join(138990..139082,139878..140130,140226..140296,140468..140906,141440..141577,142433..142549,143186..143295,143436..143544,145711..145869,146088..146246,149237..149428,150562..150745,152258..152585))
location: region:138990-152585:-1
so has part: feature:152258-152585:-1:exon
so has part: feature:150562-150745:-1:exon
so has part: feature:149237-149428:-1:exon
so has part: feature:146088-146246:-1:exon
so has part: feature:145711-145869:-1:exon
so has part: feature:143436-143544:-1:exon
so has part: feature:143186-143295:-1:exon
so has part: feature:142433-142549:-1:exon
so has part: feature:141440-141577:-1:exon
so has part: feature:140468-140906:-1:exon
so has part: feature:140226-140296:-1:exon
so has part: feature:139878-140130:-1:exon
so has part: feature:138990-139082:-1:exon

XP_032939228.1
type: Protein
SIO_000068: ncbiprotein

position:138990:-1
position: 138990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:152585:-1
position: 152585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:152258-152585:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:150562-150745:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:149237-149428:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:146088-146246:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:145711-145869:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:143436-143544:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:143186-143295:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:142433-142549:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:141440-141577:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:140468-140906:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:140226-140296:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:139878-140130:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:138990-139082:-1:exon

TARBP2
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: TARBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 158360..165014
location: region:158360-165014:1
so has part: feature:158360-165014:1:exon
subclass of: SO_0000010

117009122
type: Gene
SIO_000068: ncbigene

position:158360:1
position: 158360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:165014:1
position: 165014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:158360-165014:1:exon

TARBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: TARBP2
product: TARBP2 subunit of RISC loading complex
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon
transcript id: XM_033083327.1
SIO_010081: TARBP2
subclass of: SO_0000673
so part of: TARBP2
location: join(158360..158529,159403..159502,160135..160220,160311..160383,162769..162886,162961..163088,164336..164525,164600..165014)
location: region:158360-165014:1
so has part: feature:158360-158529:1:exon
so has part: feature:159403-159502:1:exon
so has part: feature:160135-160220:1:exon
so has part: feature:160311-160383:1:exon
so has part: feature:162769-162886:1:exon
so has part: feature:162961-163088:1:exon
so has part: feature:164336-164525:1:exon
so has part: feature:164600-165014:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:158360-158529:1:exon

position:158529:1
position: 158529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:159403-159502:1:exon

position:159403:1
position: 159403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:159502:1
position: 159502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:160135-160220:1:exon

position:160135:1
position: 160135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:160220:1
position: 160220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:160311-160383:1:exon

position:160311:1
position: 160311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:160383:1
position: 160383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:162769-162886:1:exon

position:162769:1
position: 162769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:162886:1
position: 162886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:162961-163088:1:exon

position:162961:1
position: 162961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:163088:1
position: 163088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:164336-164525:1:exon

position:164336:1
position: 164336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:164525:1
position: 164525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:164600-165014:1:exon

position:164600:1
position: 164600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TARBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: TARBP2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: RISC-loading complex subunit TARBP2
translation: MVAASPGKTPISLLQEYGTRLGRTPGYDLLKAEGQAHQPNFTFRVTLGDISCTGQGPSKKAAKHKAAEVALRLLRGGGAMLEPLEHGSPFPPEPPAEPGPAAPPPGPPRPPPSPRGPPLEMKTAVSPPQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFVEIGSGTSKKLAKRNAAAKMLVRIHNVPMEPRDGSEAEGEEDQFNMTCPRLEGLRGRAPGCTWDSLRNSAGEKLGQLRSRGAAPAPGGACALLQELSEEQSFAISYLDIDALSLSGLHQCLVELSTQPTTVCHGAAPSRDGARAQAARNALQYLRIMAGGK
SIO_010081: TARBP2
subclass of: SO_0000673
so part of: TARBP2
location: join(158370..158529,159403..159502,160135..160220,160311..160383,162769..162886,162961..163088,164336..164525,164600..164757)
location: region:158370-164757:1
so has part: feature:158370-158529:1:exon
so has part: feature:159403-159502:1:exon
so has part: feature:160135-160220:1:exon
so has part: feature:160311-160383:1:exon
so has part: feature:162769-162886:1:exon
so has part: feature:162961-163088:1:exon
so has part: feature:164336-164525:1:exon
so has part: feature:164600-164757:1:exon

XP_032939218.1
type: Protein
SIO_000068: ncbiprotein

position:158370:1
position: 158370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:164757:1
position: 164757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:158370-158529:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:159403-159502:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:160135-160220:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:160311-160383:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:162769-162886:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:162961-163088:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:164336-164525:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:164600-164757:1:exon

LOC117009100
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: LOC117009100
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(170199..233289)
location: region:170199-233289:-1
so has part: feature:170199-233289:-1:exon
subclass of: SO_0000010

117009100
type: Gene
SIO_000068: ncbigene

position:170199:-1
position: 170199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:233289:-1
position: 233289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:170199-233289:-1:exon

LOC117009100
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: LOC117009100
product: cyclic AMP-dependent transcription factor ATF-7-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_033083293.1
SIO_010081: LOC117009100
subclass of: SO_0000673
so part of: LOC117009100
location: complement(join(170199..170993,174655..174763,176773..176970,178618..178764,180016..180129,182012..182108,184487..184644,186035..186187,192187..192305,196257..196353,220875..220937,233238..233289))
location: region:170199-233289:-1
so has part: feature:233238-233289:-1:exon
so has part: feature:220875-220937:-1:exon
so has part: feature:196257-196353:-1:exon
so has part: feature:192187-192305:-1:exon
so has part: feature:186035-186187:-1:exon
so has part: feature:184487-184644:-1:exon
so has part: feature:182012-182108:-1:exon
so has part: feature:180016-180129:-1:exon
so has part: feature:178618-178764:-1:exon
so has part: feature:176773-176970:-1:exon
so has part: feature:174655-174763:-1:exon
so has part: feature:170199-170993:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:233238-233289:-1:exon

position:233238:-1
position: 233238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:220875-220937:-1:exon

position:220875:-1
position: 220875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:220937:-1
position: 220937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:196257-196353:-1:exon

position:196257:-1
position: 196257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:196353:-1
position: 196353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:192187-192305:-1:exon

position:192187:-1
position: 192187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:192305:-1
position: 192305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:186035-186187:-1:exon

position:186035:-1
position: 186035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:186187:-1
position: 186187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:184487-184644:-1:exon

position:184487:-1
position: 184487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:184644:-1
position: 184644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:182012-182108:-1:exon

position:182012:-1
position: 182012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:182108:-1
position: 182108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:180016-180129:-1:exon

position:180016:-1
position: 180016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:180129:-1
position: 180129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:178618-178764:-1:exon

position:178618:-1
position: 178618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:178764:-1
position: 178764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:176773-176970:-1:exon

position:176773:-1
position: 176773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:176970:-1
position: 176970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:174655-174763:-1:exon

position:174655:-1
position: 174655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:174763:-1
position: 174763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:170199-170993:-1:exon

position:170993:-1
position: 170993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117009100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: LOC117009100
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cyclic AMP-dependent transcription factor ATF-7-like
translation: MGDDRPFVCSAPGCGQRFTNEDHLAVHRHKHELTLKFGPARTDSVIIADQTPTPTRFLKNCEEVGLFNELASSFEHEFKKAAEDDEKKGSGALDMSLPSTPDIKIKEEEPLDVDSSPPDSPGSRPRSPRHRDRDKERDKALPSKPVILSTPTPTIVRPGSLPLHLGYEPLQPTLPSPTSVITQAPPASRQLGSPSGSLPLVVQLANGQTVPVLPGPVQMPSVISLARPVPVVPNVPGIPGPPLHSGGSISPSGLPVHSEAKMRLKASLAASSSLNGSSLAVGSASTMVTARPEQSQILGQHPDAPSPAQPQVSPAQPTPSTGGRRKRAADEDPDERRQRFLERNRAAASRCRQKRKLWVSSLEKKAEELTSQNIQLSNEVTLLRNEVAQLKQLLLAHKDCPVTALQKKSQGYLESPKESSEPSGSPAAVIQHSSAPNGLSAARSAAEAVATSVLAQMAGQRTELAVPAASHVIMAPQSQSAGR
SIO_010081: LOC117009100
subclass of: SO_0000673
so part of: LOC117009100
location: complement(join(170782..170993,174655..174763,176773..176970,178618..178764,180016..180129,182012..182108,184487..184644,186035..186187,192187..192305,196257..196353,220875..220922))
location: region:170782-220922:-1
so has part: feature:220875-220922:-1:exon
so has part: feature:196257-196353:-1:exon
so has part: feature:192187-192305:-1:exon
so has part: feature:186035-186187:-1:exon
so has part: feature:184487-184644:-1:exon
so has part: feature:182012-182108:-1:exon
so has part: feature:180016-180129:-1:exon
so has part: feature:178618-178764:-1:exon
so has part: feature:176773-176970:-1:exon
so has part: feature:174655-174763:-1:exon
so has part: feature:170782-170993:-1:exon

XP_032939184.1
type: Protein
SIO_000068: ncbiprotein

position:170782:-1
position: 170782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:220922:-1
position: 220922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:220875-220922:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:196257-196353:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:192187-192305:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:186035-186187:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:184487-184644:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:182012-182108:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:180016-180129:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:178618-178764:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:176773-176970:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:174655-174763:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:170782-170993:-1:exon

ATP5MC2
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: ATP5MC2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(234261..236777)
location: region:234261-236777:-1
so has part: feature:234261-236777:-1:exon
subclass of: SO_0000010

117009111
type: Gene
SIO_000068: ncbigene

position:234261:-1
position: 234261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:236777:-1
position: 236777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234261-236777:-1:exon

ATP5MC2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: ATP5MC2
product: ATP synthase membrane subunit c locus 2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083307.2
SIO_010081: ATP5MC2
subclass of: SO_0000673
so part of: ATP5MC2
location: complement(join(234261..234454,234929..235089,235188..235259,236069..236175,236718..236777))
location: region:234261-236777:-1
so has part: feature:236718-236777:-1:exon
so has part: feature:236069-236175:-1:exon
so has part: feature:235188-235259:-1:exon
so has part: feature:234929-235089:-1:exon
so has part: feature:234261-234454:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:236718-236777:-1:exon

position:236718:-1
position: 236718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:236069-236175:-1:exon

position:236069:-1
position: 236069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:236175:-1
position: 236175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:235188-235259:-1:exon

position:235188:-1
position: 235188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:235259:-1
position: 235259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:234929-235089:-1:exon

position:234929:-1
position: 234929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:235089:-1
position: 235089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:234261-234454:-1:exon

position:234454:-1
position: 234454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ATP5MC2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: ATP5MC2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ATP synthase F(0) complex subunit C2, mitochondrial
translation: MFTCAKFVSSAPALVRRSPRLLGQPLSVLSGAEARPEQARPGAPRALQSSAAHRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
SIO_010081: ATP5MC2
subclass of: SO_0000673
so part of: ATP5MC2
location: complement(join(234340..234454,234929..235089,235188..235259,236069..236110))
location: region:234340-236110:-1
so has part: feature:236069-236110:-1:exon
so has part: feature:235188-235259:-1:exon
so has part: feature:234929-235089:-1:exon
so has part: feature:234340-234454:-1:exon

XP_032939198.1
type: Protein
SIO_000068: ncbiprotein

position:234340:-1
position: 234340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:236110:-1
position: 236110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:236069-236110:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:235188-235259:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:234929-235089:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:234340-234454:-1:exon

HOXC13
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: HOXC13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 262384..270486
location: region:262384-270486:1
so has part: feature:262384-270486:1:exon
subclass of: SO_0000010

117009103
type: Gene
SIO_000068: ncbigene

position:262384:1
position: 262384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:270486:1
position: 270486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:262384-270486:1:exon

HOXC13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: HOXC13
product: homeobox C13
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
transcript id: XM_033083297.1
SIO_010081: HOXC13
subclass of: SO_0000673
so part of: HOXC13
location: join(262384..263038,270230..270486)
location: region:262384-270486:1
so has part: feature:262384-263038:1:exon
so has part: feature:270230-270486:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:262384-263038:1:exon

position:263038:1
position: 263038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:270230-270486:1:exon

position:270230:1
position: 270230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HOXC13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: HOXC13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C13
translation: MTAPLGLPPRWPEPLGCRCEDAPREKPRMESLGHCRETLGHCRESLGHCRESLGHCRDMLPHAGPAAPPAEGAAFAELASAEPARQCPSGPPALGYGYPAFGAGYYGCRLNLQQKPCGYHPPDKFAEAGGSLAGEELPARAKEFAAFYPGFPGSYQAVPGYLDVSVVPALGAHPEPRHEALLPMEGYQPWALANGWDGQVYCSKEQPQPAHLWKSPFPDVVPLQPEGSSFRRGRKKRVPYSKVQLKELEKEYAASKFITKEKRRRISASTNLSERQVTIWFQNRRVKEKKGVSKAKPGHLHNT
SIO_010081: HOXC13
subclass of: SO_0000673
so part of: HOXC13
location: join(262384..263038,270230..270486)
location: region:262384-270486:1
so has part: feature:262384-263038:1:exon
so has part: feature:270230-270486:1:exon

XP_032939188.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:262384-263038:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:270230-270486:1:exon

HOXC12
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: HOXC12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 282984..289868
location: region:282984-289868:1
so has part: feature:282984-289868:1:exon
subclass of: SO_0000010

117008944
type: Gene
SIO_000068: ncbigene

position:282984:1
position: 282984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:289868:1
position: 289868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:282984-289868:1:exon

HOXC12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: HOXC12
product: homeobox C12
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins
transcript id: XM_033083084.1
SIO_010081: HOXC12
subclass of: SO_0000673
so part of: HOXC12
location: join(282984..283293,283336..283542,289630..289868)
location: region:282984-289868:1
so has part: feature:282984-283293:1:exon
so has part: feature:283336-283542:1:exon
so has part: feature:289630-289868:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:282984-283293:1:exon

position:283293:1
position: 283293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:283336-283542:1:exon

position:283336:1
position: 283336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:283542:1
position: 283542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:289630-289868:1:exon

position:289630:1
position: 289630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HOXC12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: HOXC12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C12
translation: MGEHNALLNPGFVGPLLNIHTGDAFYFPNFRASGAQIPGFSSLPYPRRDNFGAIPAWGPAEPCGTYAQPCLGSLSAACGRACELARGDSEGKCYYREGDKERPGGGLGNHLGNHLGNLGNNAAPFGKLEFGAEAAQDAQPCAGLEPEPGSALLGEGAKADGTGLGSPLSAAGGAPWYPLQARSRKKRKPYSKVQLAELEGEFLVNEFITRQRRRELSERLALSDQQVKIWFQNRRMKKKRLLLREQALSFF
SIO_010081: HOXC12
subclass of: SO_0000673
so part of: HOXC12
location: join(282984..283293,283336..283542,289630..289868)
location: region:282984-289868:1
so has part: feature:282984-283293:1:exon
so has part: feature:283336-283542:1:exon
so has part: feature:289630-289868:1:exon

XP_032938975.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:282984-283293:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:283336-283542:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:289630-289868:1:exon

HOXC11
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: HOXC11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 304811..310161
location: region:304811-310161:1
so has part: feature:304811-310161:1:exon
subclass of: SO_0000010

117009105
type: Gene
SIO_000068: ncbigene

position:304811:1
position: 304811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:310161:1
position: 310161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:304811-310161:1:exon

HOXC11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: HOXC11
product: homeobox C11
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
transcript id: XM_033083299.1
SIO_010081: HOXC11
subclass of: SO_0000673
so part of: HOXC11
location: join(304811..305435,309929..310161)
location: region:304811-310161:1
so has part: feature:304811-305435:1:exon
so has part: feature:309929-310161:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:304811-305435:1:exon

position:305435:1
position: 305435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:309929-310161:1:exon

position:309929:1
position: 309929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HOXC11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: HOXC11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C11
translation: MFNSVNLGNFCSQARKERGAGGDFGERGGNLYLPSCPYYVPEFPPVLPARQISYPYSPGLPREVAPYALEPAGKWRGNYAGCCAAEELLHPEVLLKNEGFHHHHHHPQSQHHPPPPPPPPPPPPPPPPPPPPSAPAPPPAGFYKNSVLPQGFERFFESSALSAAQGARAQHGKGAEGDEEEEEEEEENNNPGSGPAAAGKESSRSAAANPPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRLLNLSDRQVKIWFQNRRMKEKKLSRDRLQFFSGNPLL
SIO_010081: HOXC11
subclass of: SO_0000673
so part of: HOXC11
location: join(304811..305435,309929..310161)
location: region:304811-310161:1
so has part: feature:304811-305435:1:exon
so has part: feature:309929-310161:1:exon

XP_032939190.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:304811-305435:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:309929-310161:1:exon

HOXC10
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: HOXC10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 322798..328615
location: region:322798-328615:1
so has part: feature:322798-328615:1:exon
subclass of: SO_0000010

117008945
type: Gene
SIO_000068: ncbigene

position:322798:1
position: 322798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:328615:1
position: 328615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:322798-328615:1:exon

HOXC10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: HOXC10
product: homeobox C10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
transcript id: XM_042780072.1
SIO_010081: HOXC10
subclass of: SO_0000673
so part of: HOXC10
location: join(322798..323259,323329..323377,328350..328615)
location: region:322798-328615:1
so has part: feature:322798-323259:1:exon
so has part: feature:323329-323377:1:exon
so has part: feature:328350-328615:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:322798-323259:1:exon

position:323259:1
position: 323259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:323329-323377:1:exon

position:323329:1
position: 323329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:323377:1
position: 323377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:328350-328615:1:exon

position:328350:1
position: 328350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HOXC10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: HOXC10
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:join(323377,328350..328351),aa:OTHER)
product: LOW QUALITY PROTEIN: homeobox protein Hox-C10
translation: MSCPDSSDSAAFLMENFSAPGLFAPPGDFGSLRACHKRDEASLGSFPPYLAHLEPWAEPKSAFRLDSSCAFAVKEESGAKICAERNALGEPGLGEPGATSGFFRFPPGQSSPETPPDPPQFPNFRQQQLQAPPARPQPQFRADFAQIRSAEQREPGSSENSDSEAKGRALXEGAGGTWLRARSGRKKRCPYTKAQTLELEKEFLFNMYLSRERRLEISRSIALSDRQVKIWFQNRRMKLKKMNRESRGRDMGSGFGFA
SIO_010081: HOXC10
subclass of: SO_0000673
so part of: HOXC10
location: join(322798..323259,323329..323377,328350..328615)
location: region:322798-328615:1
so has part: feature:322798-323259:1:exon
so has part: feature:323329-323377:1:exon
so has part: feature:328350-328615:1:exon

XP_042636006.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:322798-323259:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:323329-323377:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:328350-328615:1:exon

HOXC9
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: HOXC9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 342501..346082
location: region:342501-346082:1
so has part: feature:342501-346082:1:exon
subclass of: SO_0000010

117009107
type: Gene
SIO_000068: ncbigene

position:342501:1
position: 342501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:346082:1
position: 346082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:342501-346082:1:exon

HOXC9
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: HOXC9
product: homeobox C9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins
transcript id: XM_033083302.1
SIO_010081: HOXC9
subclass of: SO_0000673
so part of: HOXC9
location: join(342501..343055,345838..346082)
location: region:342501-346082:1
so has part: feature:342501-343055:1:exon
so has part: feature:345838-346082:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:342501-343055:1:exon

position:343055:1
position: 343055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:345838-346082:1:exon

position:345838:1
position: 345838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HOXC9
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: HOXC9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C9
translation: MSASGPISNYFVDSLLGPDSEDLLAPRFAGPGSARPAPLLPDCSDFPSCSFAPKPAVFAASWAPVPPQPSVGYPHPHGAAHYGPQAAEPRYVRTWLEPLAGAVSFPPFGPRPYGLKDAFGARRGECGPADGRAGYPELVYAAPGERAASGGGAGSPEPEAIGGGKHKEEKLELDPNNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKSDKEQQ
SIO_010081: HOXC9
subclass of: SO_0000673
so part of: HOXC9
location: join(342530..343055,345838..346082)
location: region:342530-346082:1
so has part: feature:342530-343055:1:exon
so has part: feature:345838-346082:1:exon

XP_032939193.1
type: Protein
SIO_000068: ncbiprotein

position:342530:1
position: 342530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:342530-343055:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:345838-346082:1:exon

HOXC8
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: HOXC8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 360965..369431
location: region:360965-369431:1
so has part: feature:360965-369431:1:exon
subclass of: SO_0000010

117009108
type: Gene
SIO_000068: ncbigene

position:360965:1
position: 360965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:369431:1
position: 369431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:360965-369431:1:exon

HOXC8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: HOXC8
product: homeobox C8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
transcript id: XM_033083303.1
SIO_010081: HOXC8
subclass of: SO_0000673
so part of: HOXC8
location: join(360965..361433,369136..369431)
location: region:360965-369431:1
so has part: feature:360965-361433:1:exon
so has part: feature:369136-369431:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:360965-361433:1:exon

position:361433:1
position: 361433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:369136-369431:1:exon

position:369136:1
position: 369136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HOXC8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: HOXC8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C8
translation: MSSYFVNPLFPKYKSSESLEPGYYECRFPGAVGRSPAVLYPPGAAPSFQPPSHHVQDFFHHPSASISNSGYQNNAPCALACHGGDASKFYGYEALPRQALYGAQQDAGHYADCKSSSQSSSSSAAALGAAPGGAEGQGHLGQSASPSLMFPWMRPHAPGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLSERQVKIWFQNRRMKWKKENNKDKLPGTGRDGEKTEEENNEEEEKEEEDKDESKD
SIO_010081: HOXC8
subclass of: SO_0000673
so part of: HOXC8
location: join(360965..361433,369136..369431)
location: region:360965-369431:1
so has part: feature:360965-361433:1:exon
so has part: feature:369136-369431:1:exon

XP_032939194.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:360965-361433:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:369136-369431:1:exon

HOXC6
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: HOXC6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 397038..402489
location: region:397038-402489:1
so has part: feature:397038-402489:1:exon
subclass of: SO_0000010

117009106
type: Gene
SIO_000068: ncbigene

position:397038:1
position: 397038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:402489:1
position: 402489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:397038-402489:1:exon

HOXC6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: HOXC6
product: homeobox C6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
transcript id: XM_033083301.1
SIO_010081: HOXC6
subclass of: SO_0000673
so part of: HOXC6
location: join(397038..397467,402116..402489)
location: region:397038-402489:1
so has part: feature:397038-397467:1:exon
so has part: feature:402116-402489:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:397038-397467:1:exon

position:397467:1
position: 397467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:402116-402489:1:exon

position:402116:1
position: 402116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HOXC6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: HOXC6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C6
translation: MNSYFPNASLSCHLGGGQDVLPNVAINSGYDPVRHFPSYGAAVAQNRIYGSPFYSPQDGSVVFGSSRSPYDYGSNFYQDKEVLSSCRQSSAVSGVSSGVSGVAHGGPGALPDFPEQSRGAAGPEQKAASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKETNLSSTLAGAAGGGGGGGGGGGGGGGGGGGGGGGGAAGAADSLAKEEKRDEAEEEKKE
SIO_010081: HOXC6
subclass of: SO_0000673
so part of: HOXC6
location: join(397038..397467,402116..402489)
location: region:397038-402489:1
so has part: feature:397038-397467:1:exon
so has part: feature:402116-402489:1:exon

XP_032939192.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:397038-397467:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:402116-402489:1:exon

HOXC4
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: HOXC4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 434117..443655
location: region:434117-443655:1
so has part: feature:434117-443655:1:exon
subclass of: SO_0000010

117008946
type: Gene
SIO_000068: ncbigene

position:434117:1
position: 434117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:443655:1
position: 443655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:434117-443655:1:exon

HOXC4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: HOXC4
product: homeobox C4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
transcript id: XM_033083086.1
SIO_010081: HOXC4
subclass of: SO_0000673
so part of: HOXC4
location: join(434117..434281,434390..434474,443330..443655)
location: region:434117-443655:1
so has part: feature:434117-434281:1:exon
so has part: feature:434390-434474:1:exon
so has part: feature:443330-443655:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:434117-434281:1:exon

position:434281:1
position: 434281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:434390-434474:1:exon

position:434390:1
position: 434390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:434474:1
position: 434474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:443330-443655:1:exon

position:443330:1
position: 443330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HOXC4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: HOXC4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: homeobox protein Hox-C4
translation: MIMSSYLMDSSYIDPKFPPCEEYSQSDYIPEHGTFFPQHPEVFGAFGDCGALRRALCEPGPAACAEPKAPVVYPWMKKIHVSTVNPSFPGAEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHALSLSERQIKIWFQNRRMKWKKDHKLPNTKSRAAAAPAEPPEPAEPPRPQRDPESEAQSITRL
SIO_010081: HOXC4
subclass of: SO_0000673
so part of: HOXC4
location: join(434117..434281,434390..434474,443330..443655)
location: region:434117-443655:1
so has part: feature:434117-434281:1:exon
so has part: feature:434390-434474:1:exon
so has part: feature:443330-443655:1:exon

XP_032938977.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:434117-434281:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:434390-434474:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:443330-443655:1:exon

SMUG1
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: SMUG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(<474429..478222)
location: region:474429-478222:-1
so has part: feature:474429-478222:-1:exon
subclass of: SO_0000010

117009104
type: Gene
SIO_000068: ncbigene

position:474429:-1
position: 474429
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:478222:-1
position: 478222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:474429-478222:-1:exon

SMUG1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: SMUG1
product: single-strand-selective monofunctional uracil-DNA glycosylase 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_033083298.1
SIO_010081: SMUG1
subclass of: SO_0000673
so part of: SMUG1
location: complement(join(<474429..474947,476302..476540,476610..476743,478169..478222))
location: region:474429-478222:-1
so has part: feature:478169-478222:-1:exon
so has part: feature:476610-476743:-1:exon
so has part: feature:476302-476540:-1:exon
so has part: feature:474429-474947:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:478169-478222:-1:exon

position:478169:-1
position: 478169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:476610-476743:-1:exon

position:476610:-1
position: 476610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:476743:-1
position: 476743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:476302-476540:-1:exon

position:476302:-1
position: 476302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:476540:-1
position: 476540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:474429-474947:-1:exon

position:474947:-1
position: 474947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SMUG1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: SMUG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: single-strand selective monofunctional uracil DNA glycosylase
translation: MERGEEEEEEEEEGARDEAEDGAGAEDEEGPGAGAEGAEDDDEDAEDDGGAVAARFLALELALSQRLRALPPPGPPVALLYAPLEYAWDPHRRFVRRYLRSPKRVLFLGMNPGPFGMGQTGVPFGEAWHVREWLRVRGAVLKPPREHPKRPVLGLRCPRAEVSGARFWGLIRSLCPDPRRFFRHCFVHNLCPLLFLTESGRNVALPELRGPERERLLRACGDALVAAVVALSVRLVVALGRVAEVRARRELRGAGLDVEVRGIPHPSPRNPRANRGWEGEARARLEELGVLRLL
SIO_010081: SMUG1
subclass of: SO_0000673
so part of: SMUG1
location: complement(join(<474429..474947,476302..476540,476610..476733))
location: region:474429-476733:-1
so has part: feature:476610-476733:-1:exon
so has part: feature:476302-476540:-1:exon
so has part: feature:474429-474947:-1:exon

XP_032939189.1
type: Protein
SIO_000068: ncbiprotein

position:476733:-1
position: 476733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:476610-476733:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:476302-476540:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:474429-474947:-1:exon

CBX5
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: CBX5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(480929..491228)
location: region:480929-491228:-1
so has part: feature:480929-491228:-1:exon
subclass of: SO_0000010

117009110
type: Gene
SIO_000068: ncbigene

position:480929:-1
position: 480929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:491228:-1
position: 491228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:480929-491228:-1:exon

CBX5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: CBX5
product: chromobox 5, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083305.1
SIO_010081: CBX5
subclass of: SO_0000673
so part of: CBX5
location: complement(join(480929..481134,484417..484514,486011..486209,487593..487744,491133..491228))
location: region:480929-491228:-1
so has part: feature:491133-491228:-1:exon
so has part: feature:487593-487744:-1:exon
so has part: feature:486011-486209:-1:exon
so has part: feature:484417-484514:-1:exon
so has part: feature:480929-481134:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:491133-491228:-1:exon

position:491133:-1
position: 491133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:487593-487744:-1:exon

position:487593:-1
position: 487593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:487744:-1
position: 487744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:486011-486209:-1:exon

position:486011:-1
position: 486011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:486209:-1
position: 486209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:484417-484514:-1:exon

position:484417:-1
position: 484417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:484514:-1
position: 484514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:480929-481134:-1:exon

position:481134:-1
position: 481134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CBX5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: CBX5
product: chromobox 5, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083306.1
SIO_010081: CBX5
subclass of: SO_0000673
so part of: CBX5
location: complement(join(480929..481134,484417..484514,486011..486209,487593..487744,490933..490985))
location: region:480929-490985:-1
so has part: feature:490933-490985:-1:exon
so has part: feature:487593-487744:-1:exon
so has part: feature:486011-486209:-1:exon
so has part: feature:484417-484514:-1:exon
so has part: feature:480929-481134:-1:exon

position:490985:-1
position: 490985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:490933-490985:-1:exon

position:490933:-1
position: 490933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:487593-487744:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:486011-486209:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:484417-484514:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:480929-481134:-1:exon

CBX5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: CBX5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: chromobox protein homolog 5
translation: MGRRSRRAADSSSSGEEEEYVVEKVLDRRVVRGQAEYLLKWKGFSEEHNTWEPEKNLDCPELISQFLRKDRRMRDMRDTRDSDGSRPRERPEGAKRKGLPGSEDGRAKKKRESNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANLKCPQIVIAFYEERLTWHAYPEDSDSKERDPPRS
SIO_010081: CBX5
subclass of: SO_0000673
so part of: CBX5
location: complement(join(480984..481134,484417..484514,486011..486209,487593..487729))
location: region:480984-487729:-1
so has part: feature:487593-487729:-1:exon
so has part: feature:486011-486209:-1:exon
so has part: feature:484417-484514:-1:exon
so has part: feature:480984-481134:-1:exon

XP_032939196.1
type: Protein
SIO_000068: ncbiprotein

position:480984:-1
position: 480984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:487729:-1
position: 487729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:487593-487729:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:486011-486209:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:484417-484514:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:480984-481134:-1:exon

CBX5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: CBX5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: chromobox protein homolog 5
translation: MGRRSRRAADSSSSGEEEEYVVEKVLDRRVVRGQAEYLLKWKGFSEEHNTWEPEKNLDCPELISQFLRKDRRMRDMRDTRDSDGSRPRERPEGAKRKGLPGSEDGRAKKKRESNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANLKCPQIVIAFYEERLTWHAYPEDSDSKERDPPRS
SIO_010081: CBX5
subclass of: SO_0000673
so part of: CBX5
location: complement(join(480984..481134,484417..484514,486011..486209,487593..487729))
location: region:480984-487729:-1
so has part: feature:487593-487729:-1:exon
so has part: feature:486011-486209:-1:exon
so has part: feature:484417-484514:-1:exon
so has part: feature:480984-481134:-1:exon

XP_032939197.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:487593-487729:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:486011-486209:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:484417-484514:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:480984-481134:-1:exon

HNRNPA1
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: HNRNPA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 491611..510152
location: region:491611-510152:1
so has part: feature:491611-510152:1:exon
subclass of: SO_0000010

117009101
type: Gene
SIO_000068: ncbigene

position:491611:1
position: 491611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:510152:1
position: 510152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:491611-510152:1:exon

HNRNPA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: HNRNPA1
product: heterogeneous nuclear ribonucleoprotein A1, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083294.1
SIO_010081: HNRNPA1
subclass of: SO_0000673
so part of: HNRNPA1
location: join(491611..491700,493919..494035,496246..496392,497917..498127,499253..499345,499426..499521,499671..499730,501139..501315,504231..504353,506551..506613,509484..510152)
location: region:491611-510152:1
so has part: feature:491611-491700:1:exon
so has part: feature:493919-494035:1:exon
so has part: feature:496246-496392:1:exon
so has part: feature:497917-498127:1:exon
so has part: feature:499253-499345:1:exon
so has part: feature:499426-499521:1:exon
so has part: feature:499671-499730:1:exon
so has part: feature:501139-501315:1:exon
so has part: feature:504231-504353:1:exon
so has part: feature:506551-506613:1:exon
so has part: feature:509484-510152:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:491611-491700:1:exon

position:491700:1
position: 491700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:493919-494035:1:exon

position:493919:1
position: 493919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:494035:1
position: 494035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:496246-496392:1:exon

position:496246:1
position: 496246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:496392:1
position: 496392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:497917-498127:1:exon

position:497917:1
position: 497917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:498127:1
position: 498127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:499253-499345:1:exon

position:499253:1
position: 499253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:499345:1
position: 499345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:499426-499521:1:exon

position:499426:1
position: 499426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:499521:1
position: 499521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:499671-499730:1:exon

position:499671:1
position: 499671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:499730:1
position: 499730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:501139-501315:1:exon

position:501139:1
position: 501139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:501315:1
position: 501315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:504231-504353:1:exon

position:504231:1
position: 504231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:504353:1
position: 504353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:506551-506613:1:exon

position:506551:1
position: 506551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:506613:1
position: 506613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:509484-510152:1:exon

position:509484:1
position: 509484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HNRNPA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: HNRNPA1
product: heterogeneous nuclear ribonucleoprotein A1, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083295.2
SIO_010081: HNRNPA1
subclass of: SO_0000673
so part of: HNRNPA1
location: join(491622..491700,493919..494035,496246..496392,497917..498127,499253..499345,499426..499521,499671..499730,501139..501315,504231..504353,506551..506613,509993..510152)
location: region:491622-510152:1
so has part: feature:491622-491700:1:exon
so has part: feature:493919-494035:1:exon
so has part: feature:496246-496392:1:exon
so has part: feature:497917-498127:1:exon
so has part: feature:499253-499345:1:exon
so has part: feature:499426-499521:1:exon
so has part: feature:499671-499730:1:exon
so has part: feature:501139-501315:1:exon
so has part: feature:504231-504353:1:exon
so has part: feature:506551-506613:1:exon
so has part: feature:509993-510152:1:exon

position:491622:1
position: 491622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:491622-491700:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:493919-494035:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:496246-496392:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:497917-498127:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:499253-499345:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:499426-499521:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:499671-499730:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:501139-501315:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:504231-504353:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:506551-506613:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:509993-510152:1:exon

position:509993:1
position: 509993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HNRNPA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: HNRNPA1
product: heterogeneous nuclear ribonucleoprotein A1, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083296.2
SIO_010081: HNRNPA1
subclass of: SO_0000673
so part of: HNRNPA1
location: join(491622..491700,493919..494035,496246..496392,497917..498127,499253..499345,499426..499521,501139..501315,504231..504353,506551..506613,509484..510152)
location: region:491622-510152:1
so has part: feature:491622-491700:1:exon
so has part: feature:493919-494035:1:exon
so has part: feature:496246-496392:1:exon
so has part: feature:497917-498127:1:exon
so has part: feature:499253-499345:1:exon
so has part: feature:499426-499521:1:exon
so has part: feature:501139-501315:1:exon
so has part: feature:504231-504353:1:exon
so has part: feature:506551-506613:1:exon
so has part: feature:509484-510152:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:491622-491700:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:493919-494035:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:496246-496392:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:497917-498127:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:499253-499345:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:499426-499521:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:501139-501315:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:504231-504353:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:506551-506613:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:509484-510152:1:exon

HNRNPA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: HNRNPA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: heterogeneous nuclear ribonucleoprotein A1 isoform X1
translation: MAKAESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLREYFGQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASAGQRGRSGSGNFGGGGRGGFGGGGDNFNRGGNFGGRGGFGRAGAYGGDGFNGFGADGYGGGGGPGYSGGNRGYGGGSGSYDGYNNGGGFGGGSGGRRPARGPALAVRNGLGEAGTGSNFGGGGSYNDFGSYNNQASSFGPMKGGSFGGRSSGPYGGGGYGSSSGGGSYGGGRRF
SIO_010081: HNRNPA1
subclass of: SO_0000673
so part of: HNRNPA1
location: join(491686..491700,493919..494035,496246..496392,497917..498127,499253..499345,499426..499521,499671..499730,501139..501315,504231..504353,506551..506606)
location: region:491686-506606:1
so has part: feature:491686-491700:1:exon
so has part: feature:493919-494035:1:exon
so has part: feature:496246-496392:1:exon
so has part: feature:497917-498127:1:exon
so has part: feature:499253-499345:1:exon
so has part: feature:499426-499521:1:exon
so has part: feature:499671-499730:1:exon
so has part: feature:501139-501315:1:exon
so has part: feature:504231-504353:1:exon
so has part: feature:506551-506606:1:exon

XP_032939185.1
type: Protein
SIO_000068: ncbiprotein

position:491686:1
position: 491686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:506606:1
position: 506606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:491686-491700:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:493919-494035:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:496246-496392:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:497917-498127:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:499253-499345:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:499426-499521:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:499671-499730:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:501139-501315:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:504231-504353:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:506551-506606:1:exon

HNRNPA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: HNRNPA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: heterogeneous nuclear ribonucleoprotein A1 isoform X1
translation: MAKAESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLREYFGQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASAGQRGRSGSGNFGGGGRGGFGGGGDNFNRGGNFGGRGGFGRAGAYGGDGFNGFGADGYGGGGGPGYSGGNRGYGGGSGSYDGYNNGGGFGGGSGGRRPARGPALAVRNGLGEAGTGSNFGGGGSYNDFGSYNNQASSFGPMKGGSFGGRSSGPYGGGGYGSSSGGGSYGGGRRF
SIO_010081: HNRNPA1
subclass of: SO_0000673
so part of: HNRNPA1
location: join(491686..491700,493919..494035,496246..496392,497917..498127,499253..499345,499426..499521,499671..499730,501139..501315,504231..504353,506551..506606)
location: region:491686-506606:1
so has part: feature:491686-491700:1:exon
so has part: feature:493919-494035:1:exon
so has part: feature:496246-496392:1:exon
so has part: feature:497917-498127:1:exon
so has part: feature:499253-499345:1:exon
so has part: feature:499426-499521:1:exon
so has part: feature:499671-499730:1:exon
so has part: feature:501139-501315:1:exon
so has part: feature:504231-504353:1:exon
so has part: feature:506551-506606:1:exon

XP_032939186.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:491686-491700:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:493919-494035:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:496246-496392:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:497917-498127:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:499253-499345:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:499426-499521:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:499671-499730:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:501139-501315:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:504231-504353:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:506551-506606:1:exon

HNRNPA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: HNRNPA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: heterogeneous nuclear ribonucleoprotein A1 isoform X2
translation: MAKAESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLREYFGQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASAGQRGRSGSGNFGGGGRGGFGGGGDNFNRGGNFGGRGYGGGGGPGYSGGNRGYGGGSGSYDGYNNGGGFGGGSGGRRPARGPALAVRNGLGEAGTGSNFGGGGSYNDFGSYNNQASSFGPMKGGSFGGRSSGPYGGGGYGSSSGGGSYGGGRRF
SIO_010081: HNRNPA1
subclass of: SO_0000673
so part of: HNRNPA1
location: join(491686..491700,493919..494035,496246..496392,497917..498127,499253..499345,499426..499521,501139..501315,504231..504353,506551..506606)
location: region:491686-506606:1
so has part: feature:491686-491700:1:exon
so has part: feature:493919-494035:1:exon
so has part: feature:496246-496392:1:exon
so has part: feature:497917-498127:1:exon
so has part: feature:499253-499345:1:exon
so has part: feature:499426-499521:1:exon
so has part: feature:501139-501315:1:exon
so has part: feature:504231-504353:1:exon
so has part: feature:506551-506606:1:exon

XP_032939187.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:491686-491700:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:493919-494035:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:496246-496392:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:497917-498127:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:499253-499345:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:499426-499521:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:501139-501315:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:504231-504353:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:506551-506606:1:exon

COPZ1
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: COPZ1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 512685..519309
location: region:512685-519309:1
so has part: feature:512685-519309:1:exon
subclass of: SO_0000010

117009113
type: Gene
SIO_000068: ncbigene

position:512685:1
position: 512685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:519309:1
position: 519309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:512685-519309:1:exon

COPZ1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: COPZ1
product: COPI coat complex subunit zeta 1
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons
transcript id: XM_033083310.1
SIO_010081: COPZ1
subclass of: SO_0000673
so part of: COPZ1
location: join(512685..512782,514399..514467,514663..514748,515636..515724,516610..516665,516927..517006,518111..518162,518726..518764,519242..519309)
location: region:512685-519309:1
so has part: feature:512685-512782:1:exon
so has part: feature:514399-514467:1:exon
so has part: feature:514663-514748:1:exon
so has part: feature:515636-515724:1:exon
so has part: feature:516610-516665:1:exon
so has part: feature:516927-517006:1:exon
so has part: feature:518111-518162:1:exon
so has part: feature:518726-518764:1:exon
so has part: feature:519242-519309:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:512685-512782:1:exon

position:512782:1
position: 512782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:514399-514467:1:exon

position:514399:1
position: 514399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:514467:1
position: 514467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:514663-514748:1:exon

position:514663:1
position: 514663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:514748:1
position: 514748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:515636-515724:1:exon

position:515636:1
position: 515636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:515724:1
position: 515724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:516610-516665:1:exon

position:516610:1
position: 516610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:516665:1
position: 516665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:516927-517006:1:exon

position:516927:1
position: 516927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:517006:1
position: 517006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:518111-518162:1:exon

position:518111:1
position: 518111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:518162:1
position: 518162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:518726-518764:1:exon

position:518726:1
position: 518726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:518764:1
position: 518764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:519242-519309:1:exon

position:519242:1
position: 519242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

COPZ1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: COPZ1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: coatomer subunit zeta-1
translation: MEALVLEPSLYTVKAIIILDNDGERLFAKYYDDTYPSVKEQRAFEKNIFSKTHRSDSESRLLDGLTVVYKGSIDLYAYVIGSAHQNELMLTAVLNCLFDSLSQMLRKNVERRALLDNMEGLFLAVDEIVDGGVILESDPQQVVHRVAVRGEDVPLTEQTVTQVLQSAKEQIKWSLLR
SIO_010081: COPZ1
subclass of: SO_0000673
so part of: COPZ1
location: join(512765..512782,514399..514467,514663..514748,515636..515724,516610..516665,516927..517006,518111..518162,518726..518764,519242..519289)
location: region:512765-519289:1
so has part: feature:512765-512782:1:exon
so has part: feature:514399-514467:1:exon
so has part: feature:514663-514748:1:exon
so has part: feature:515636-515724:1:exon
so has part: feature:516610-516665:1:exon
so has part: feature:516927-517006:1:exon
so has part: feature:518111-518162:1:exon
so has part: feature:518726-518764:1:exon
so has part: feature:519242-519289:1:exon

XP_032939201.1
type: Protein
SIO_000068: ncbiprotein

position:512765:1
position: 512765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:519289:1
position: 519289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:512765-512782:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:514399-514467:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:514663-514748:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:515636-515724:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:516610-516665:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:516927-517006:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:518111-518162:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:518726-518764:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:519242-519289:1:exon

ZNF385A
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: ZNF385A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(524364..537312)
location: region:524364-537312:-1
so has part: feature:524364-537312:-1:exon
subclass of: SO_0000010

117008947
type: Gene
SIO_000068: ncbigene

position:524364:-1
position: 524364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:537312:-1
position: 537312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:524364-537312:-1:exon

ZNF385A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: ZNF385A
product: zinc finger protein 385A
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_042780073.1
SIO_010081: ZNF385A
subclass of: SO_0000673
so part of: ZNF385A
location: complement(join(524364..524809,525850..525942,528326..528492,530279..530429,531005..531024,531098..531236,533270..533365,537282..537312))
location: region:524364-537312:-1
so has part: feature:537282-537312:-1:exon
so has part: feature:533270-533365:-1:exon
so has part: feature:531098-531236:-1:exon
so has part: feature:531005-531024:-1:exon
so has part: feature:530279-530429:-1:exon
so has part: feature:528326-528492:-1:exon
so has part: feature:525850-525942:-1:exon
so has part: feature:524364-524809:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:537282-537312:-1:exon

position:537282:-1
position: 537282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:533270-533365:-1:exon

position:533270:-1
position: 533270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:533365:-1
position: 533365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:531098-531236:-1:exon

position:531098:-1
position: 531098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:531236:-1
position: 531236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:531005-531024:-1:exon

position:531005:-1
position: 531005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:531024:-1
position: 531024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:530279-530429:-1:exon

position:530279:-1
position: 530279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:530429:-1
position: 530429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:528326-528492:-1:exon

position:528326:-1
position: 528326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:528492:-1
position: 528492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:525850-525942:-1:exon

position:525850:-1
position: 525850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:525942:-1
position: 525942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:524364-524809:-1:exon

position:524809:-1
position: 524809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ZNF385A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: ZNF385A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 385A
translation: MEPLPKGVLGALAKPRRPVIACSVCQIRFNSESQAAAHYQGNRHARRLKGLEAARARRGGDPGEPPEPPPAGDPPERSGTPPSAQGGVPEPGGARGGPGGAEEEEEERAKAKRLLYCALCKVAVNSLSQLEAHNKGTKHKTLVEARSGLGPIRAFPRGGGGSGTPPAETPERSFHCQICNVRLNSELQLKQHISSRRHRDGVAGKPNPLLGRHKKPRSPPELALPFPKDLPKALAGGGLLPPPLALAAAAAAAMAAPPLALRPPGPPGPPGPPGPPLLPGPPLAPALLRPAPGPLRPAHAPLLFSPY
SIO_010081: ZNF385A
subclass of: SO_0000673
so part of: ZNF385A
location: complement(join(524552..524809,525850..525942,528326..528492,530279..530429,531005..531024,531098..531236,533270..533365))
location: region:524552-533365:-1
so has part: feature:533270-533365:-1:exon
so has part: feature:531098-531236:-1:exon
so has part: feature:531005-531024:-1:exon
so has part: feature:530279-530429:-1:exon
so has part: feature:528326-528492:-1:exon
so has part: feature:525850-525942:-1:exon
so has part: feature:524552-524809:-1:exon

XP_042636007.1
type: Protein
SIO_000068: ncbiprotein

position:524552:-1
position: 524552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:533270-533365:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:531098-531236:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:531005-531024:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:530279-530429:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:528326-528492:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:525850-525942:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:524552-524809:-1:exon

ITGA5
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: ITGA5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(543024..578620)
location: region:543024-578620:-1
so has part: feature:543024-578620:-1:exon
subclass of: SO_0000010

117008948
type: Gene
SIO_000068: ncbigene

position:543024:-1
position: 543024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:578620:-1
position: 578620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:543024-578620:-1:exon

ITGA5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: ITGA5
product: integrin subunit alpha 5
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_033083089.1
SIO_010081: ITGA5
subclass of: SO_0000673
so part of: ITGA5
location: complement(join(543024..543716,544380..544502,544873..544974,545193..545306,546029..546112,547106..547258,548725..548827,549600..549680,551019..551098,551190..551282,552463..552613,553418..553485,554725..554862,558136..558305,559807..559862,561303..561407,561794..561839,563280..563471,564034..564254,565112..565168,566210..566262,566396..566439,566750..566794,566910..567035,568824..568869,570696..570757,571953..572079,575295..575407,576949..577077,578388..578620))
location: region:543024-578620:-1
so has part: feature:578388-578620:-1:exon
so has part: feature:576949-577077:-1:exon
so has part: feature:575295-575407:-1:exon
so has part: feature:571953-572079:-1:exon
so has part: feature:570696-570757:-1:exon
so has part: feature:568824-568869:-1:exon
so has part: feature:566910-567035:-1:exon
so has part: feature:566750-566794:-1:exon
so has part: feature:566396-566439:-1:exon
so has part: feature:566210-566262:-1:exon
so has part: feature:565112-565168:-1:exon
so has part: feature:564034-564254:-1:exon
so has part: feature:563280-563471:-1:exon
so has part: feature:561794-561839:-1:exon
so has part: feature:561303-561407:-1:exon
so has part: feature:559807-559862:-1:exon
so has part: feature:558136-558305:-1:exon
so has part: feature:554725-554862:-1:exon
so has part: feature:553418-553485:-1:exon
so has part: feature:552463-552613:-1:exon
so has part: feature:551190-551282:-1:exon
so has part: feature:551019-551098:-1:exon
so has part: feature:549600-549680:-1:exon
so has part: feature:548725-548827:-1:exon
so has part: feature:547106-547258:-1:exon
so has part: feature:546029-546112:-1:exon
so has part: feature:545193-545306:-1:exon
so has part: feature:544873-544974:-1:exon
so has part: feature:544380-544502:-1:exon
so has part: feature:543024-543716:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:578388-578620:-1:exon

position:578388:-1
position: 578388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:576949-577077:-1:exon

position:576949:-1
position: 576949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:577077:-1
position: 577077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:575295-575407:-1:exon

position:575295:-1
position: 575295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:575407:-1
position: 575407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:571953-572079:-1:exon

position:571953:-1
position: 571953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:572079:-1
position: 572079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:570696-570757:-1:exon

position:570696:-1
position: 570696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:570757:-1
position: 570757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:568824-568869:-1:exon

position:568824:-1
position: 568824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:568869:-1
position: 568869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:566910-567035:-1:exon

position:566910:-1
position: 566910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:567035:-1
position: 567035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:566750-566794:-1:exon

position:566750:-1
position: 566750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:566794:-1
position: 566794
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:566396-566439:-1:exon

position:566396:-1
position: 566396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:566439:-1
position: 566439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:566210-566262:-1:exon

position:566210:-1
position: 566210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:566262:-1
position: 566262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:565112-565168:-1:exon

position:565112:-1
position: 565112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:565168:-1
position: 565168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:564034-564254:-1:exon

position:564034:-1
position: 564034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:564254:-1
position: 564254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:563280-563471:-1:exon

position:563280:-1
position: 563280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:563471:-1
position: 563471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:561794-561839:-1:exon

position:561794:-1
position: 561794
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:561839:-1
position: 561839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:561303-561407:-1:exon

position:561303:-1
position: 561303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:561407:-1
position: 561407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:559807-559862:-1:exon

position:559807:-1
position: 559807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:559862:-1
position: 559862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:558136-558305:-1:exon

position:558136:-1
position: 558136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:558305:-1
position: 558305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:554725-554862:-1:exon

position:554725:-1
position: 554725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:554862:-1
position: 554862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:553418-553485:-1:exon

position:553418:-1
position: 553418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:553485:-1
position: 553485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:552463-552613:-1:exon

position:552463:-1
position: 552463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:552613:-1
position: 552613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:551190-551282:-1:exon

position:551190:-1
position: 551190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:551282:-1
position: 551282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:551019-551098:-1:exon

position:551019:-1
position: 551019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:551098:-1
position: 551098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:549600-549680:-1:exon

position:549600:-1
position: 549600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:549680:-1
position: 549680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:548725-548827:-1:exon

position:548725:-1
position: 548725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:548827:-1
position: 548827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:547106-547258:-1:exon

position:547106:-1
position: 547106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:547258:-1
position: 547258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:546029-546112:-1:exon

position:546029:-1
position: 546029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:546112:-1
position: 546112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:545193-545306:-1:exon

position:545193:-1
position: 545193
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:545306:-1
position: 545306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:544873-544974:-1:exon

position:544873:-1
position: 544873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:544974:-1
position: 544974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:544380-544502:-1:exon

position:544380:-1
position: 544380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:544502:-1
position: 544502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:543024-543716:-1:exon

position:543716:-1
position: 543716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ITGA5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: ITGA5
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: integrin alpha-5
translation: MAPLPAPLPPSRPRARIALPVPLPVPLPFPVLLPVLLPVLLPPLAAFNLEASRPEVFRGAPGSFFGFALDFYLPEPRSVSILVGAPKANTSQPNVTQGGAVFRCPWPPTGGCDPIDFDHIGTRTHDFGGNSSDSAAPVEFKSLQWFGATVRAHNGSILACAPLYSWSPPKDEGGSREPVGSCFLSLGNFSKFVEYAPCRSDLNSAAGQGYCQGGFSAEFTQSGRVLLGGPGSFFWQGQVMSATQEQIAAGNFPEYLIQDVPGQLQTGQAAPSHDDSYMGYSVAVGEFSGDSTPDFVAGVPKGNLTYGYVTILNGSNMRSLYNFSGSQMASYFGYAVAATDVNNDGLTDLLVGAPLFMARSGAGGARELGRVYLYLQGGEGGARDPPQPPQPPLTGAHEFGRFGSAIAPLGDLDRDGYNDVAVGAPLGSDGRRGLVFIFRGGVSGLRPRPAQVLRGLGGPRSQPDFFGAALRGGSDLDGNGYPDLLVGAFGADTALVYRGRPIVHASATLAIVPTMINPEERGCVLATGHAVPCVNVTFCLNASGRHLPGPIGLALELSVDAPKPGGSRRALFLGGGAGGALPSPTRNLSLEVPNGGTPRCRTLGVYLRNESEFRDKLSPIPVSLSLSLDPAVSPPPPGLSPLLAPSTRTRLEAKAHIQLDCGEDNVCVPDLQLEATADRRAVFLGDRNPLNVTFQARNVGEGGAYEAELLVRPPPGALYSGVLRPHGNFSALSCELGGGNASSPVLCDLGNPMKAGASIWGGLRFTLPQLSDSGGSVRFELQIRSKNANNSQSAVVPVALAVRAATRVTVFGVSRPDVVTVPEGGWGPDPPQRLQDLGPPVEHVYEVVNEGPSAISHGTLELSCPLGHRGHPLLYVTGHSGLHNCTASHGPDPLGLQEREPSPGPHALQRRDTGGDTVGDIGDTLVCPEAECFRLSCPSGGLERQQRVSLRLTFRPRTPPLRQRELGPLSLRCDAEFRVLRLPYRVRPESYPRHRLQVVTALAWARPEAAGGVPVWVVVLAVLLGLLLLALLCYGLYKLGFFKRSGPYGTAMEKAQLKPQAASEA
SIO_010081: ITGA5
subclass of: SO_0000673
so part of: ITGA5
location: complement(join(543633..543716,544380..544502,544873..544974,545193..545306,546029..546112,547106..547258,548725..548827,549600..549680,551019..551098,551190..551282,552463..552613,553418..553485,554725..554862,558136..558305,559807..559862,561303..561407,561794..561839,563280..563471,564034..564254,565112..565168,566210..566262,566396..566439,566750..566794,566910..567035,568824..568869,570696..570757,571953..572079,575295..575407,576949..577077,578388..578620))
location: region:543633-578620:-1
so has part: feature:578388-578620:-1:exon
so has part: feature:576949-577077:-1:exon
so has part: feature:575295-575407:-1:exon
so has part: feature:571953-572079:-1:exon
so has part: feature:570696-570757:-1:exon
so has part: feature:568824-568869:-1:exon
so has part: feature:566910-567035:-1:exon
so has part: feature:566750-566794:-1:exon
so has part: feature:566396-566439:-1:exon
so has part: feature:566210-566262:-1:exon
so has part: feature:565112-565168:-1:exon
so has part: feature:564034-564254:-1:exon
so has part: feature:563280-563471:-1:exon
so has part: feature:561794-561839:-1:exon
so has part: feature:561303-561407:-1:exon
so has part: feature:559807-559862:-1:exon
so has part: feature:558136-558305:-1:exon
so has part: feature:554725-554862:-1:exon
so has part: feature:553418-553485:-1:exon
so has part: feature:552463-552613:-1:exon
so has part: feature:551190-551282:-1:exon
so has part: feature:551019-551098:-1:exon
so has part: feature:549600-549680:-1:exon
so has part: feature:548725-548827:-1:exon
so has part: feature:547106-547258:-1:exon
so has part: feature:546029-546112:-1:exon
so has part: feature:545193-545306:-1:exon
so has part: feature:544873-544974:-1:exon
so has part: feature:544380-544502:-1:exon
so has part: feature:543633-543716:-1:exon

XP_032938980.1
type: Protein
SIO_000068: ncbiprotein

position:543633:-1
position: 543633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:578388-578620:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:576949-577077:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:575295-575407:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:571953-572079:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:570696-570757:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:568824-568869:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:566910-567035:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:566750-566794:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:566396-566439:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:566210-566262:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:565112-565168:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:564034-564254:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:563280-563471:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:561794-561839:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:561303-561407:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:559807-559862:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:558136-558305:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:554725-554862:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:553418-553485:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:552463-552613:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:551190-551282:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:551019-551098:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:549600-549680:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:548725-548827:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:547106-547258:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:546029-546112:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:545193-545306:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:544873-544974:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:544380-544502:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:543633-543716:-1:exon

GTSF1
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: GTSF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(593717..600917)
location: region:593717-600917:-1
so has part: feature:593717-600917:-1:exon
subclass of: SO_0000010

117009109
type: Gene
SIO_000068: ncbigene

position:593717:-1
position: 593717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:600917:-1
position: 600917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:593717-600917:-1:exon

GTSF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: GTSF1
product: gametocyte specific factor 1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083304.1
SIO_010081: GTSF1
subclass of: SO_0000673
so part of: GTSF1
location: complement(join(593717..594029,595378..595459,596110..596190,597011..597137,600071..600917))
location: region:593717-600917:-1
so has part: feature:600071-600917:-1:exon
so has part: feature:597011-597137:-1:exon
so has part: feature:596110-596190:-1:exon
so has part: feature:595378-595459:-1:exon
so has part: feature:593717-594029:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:600071-600917:-1:exon

position:600071:-1
position: 600071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:597011-597137:-1:exon

position:597011:-1
position: 597011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:597137:-1
position: 597137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:596110-596190:-1:exon

position:596110:-1
position: 596110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:596190:-1
position: 596190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:595378-595459:-1:exon

position:595378:-1
position: 595378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:595459:-1
position: 595459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:593717-594029:-1:exon

position:594029:-1
position: 594029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

GTSF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: GTSF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gametocyte-specific factor 1
translation: MEPDALVQCPYDRSHQVRVSRLPYHLVRCQQNNPQVSRSLATCPFNARHRVPRGHLRSHVSSCPDKLPLELPPDPEDAAGAPWEPPQAWQPPPCREDWDAELSELEQEQPPPFVLHVTKGDLPVPCPSPDPATPPEGLSPRKPRLGTSGARLGTSGARLGTSGPRLGPSGARLGPEGARVGTSGARLGTSGARLGTPGARLGTSGARAGPAGGVPGPPTLRCFWE
SIO_010081: GTSF1
subclass of: SO_0000673
so part of: GTSF1
location: complement(join(593735..594029,595378..595459,596110..596190,597011..597137,600071..600163))
location: region:593735-600163:-1
so has part: feature:600071-600163:-1:exon
so has part: feature:597011-597137:-1:exon
so has part: feature:596110-596190:-1:exon
so has part: feature:595378-595459:-1:exon
so has part: feature:593735-594029:-1:exon

XP_032939195.1
type: Protein
SIO_000068: ncbiprotein

position:593735:-1
position: 593735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:600163:-1
position: 600163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:600071-600163:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:597011-597137:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:596110-596190:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:595378-595459:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:593735-594029:-1:exon

NCKAP1L
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: NCKAP1L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 602553..636763
location: region:602553-636763:1
so has part: feature:602553-636763:1:exon
subclass of: SO_0000010

117009112
type: Gene
SIO_000068: ncbigene

position:602553:1
position: 602553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:636763:1
position: 636763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:602553-636763:1:exon

NCKAP1L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: NCKAP1L
product: NCK associated protein 1 like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_033083309.1
SIO_010081: NCKAP1L
subclass of: SO_0000673
so part of: NCKAP1L
location: join(602553..602685,604381..604491,605864..605956,606045..606101,607315..607457,608642..608732,609554..609691,611228..611276,612017..612170,613059..613115,615243..615339,616617..616726,619005..619137,621072..621153,621422..621480,622015..622160,623584..623716,623790..623909,625386..625522,626291..626422,627828..628046,630093..630223,630339..630436,631542..631629,631730..631812,632938..633018,633110..633203,633289..633405,634046..634155,634977..635066,636615..636763)
location: region:602553-636763:1
so has part: feature:602553-602685:1:exon
so has part: feature:604381-604491:1:exon
so has part: feature:605864-605956:1:exon
so has part: feature:606045-606101:1:exon
so has part: feature:607315-607457:1:exon
so has part: feature:608642-608732:1:exon
so has part: feature:609554-609691:1:exon
so has part: feature:611228-611276:1:exon
so has part: feature:612017-612170:1:exon
so has part: feature:613059-613115:1:exon
so has part: feature:615243-615339:1:exon
so has part: feature:616617-616726:1:exon
so has part: feature:619005-619137:1:exon
so has part: feature:621072-621153:1:exon
so has part: feature:621422-621480:1:exon
so has part: feature:622015-622160:1:exon
so has part: feature:623584-623716:1:exon
so has part: feature:623790-623909:1:exon
so has part: feature:625386-625522:1:exon
so has part: feature:626291-626422:1:exon
so has part: feature:627828-628046:1:exon
so has part: feature:630093-630223:1:exon
so has part: feature:630339-630436:1:exon
so has part: feature:631542-631629:1:exon
so has part: feature:631730-631812:1:exon
so has part: feature:632938-633018:1:exon
so has part: feature:633110-633203:1:exon
so has part: feature:633289-633405:1:exon
so has part: feature:634046-634155:1:exon
so has part: feature:634977-635066:1:exon
so has part: feature:636615-636763:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:602553-602685:1:exon

position:602685:1
position: 602685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:604381-604491:1:exon

position:604381:1
position: 604381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:604491:1
position: 604491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:605864-605956:1:exon

position:605864:1
position: 605864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:605956:1
position: 605956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:606045-606101:1:exon

position:606045:1
position: 606045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:606101:1
position: 606101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:607315-607457:1:exon

position:607315:1
position: 607315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:607457:1
position: 607457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:608642-608732:1:exon

position:608642:1
position: 608642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:608732:1
position: 608732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:609554-609691:1:exon

position:609554:1
position: 609554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:609691:1
position: 609691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:611228-611276:1:exon

position:611228:1
position: 611228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:611276:1
position: 611276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:612017-612170:1:exon

position:612017:1
position: 612017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:612170:1
position: 612170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:613059-613115:1:exon

position:613059:1
position: 613059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:613115:1
position: 613115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:615243-615339:1:exon

position:615243:1
position: 615243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:615339:1
position: 615339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:616617-616726:1:exon

position:616617:1
position: 616617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:616726:1
position: 616726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:619005-619137:1:exon

position:619005:1
position: 619005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:619137:1
position: 619137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:621072-621153:1:exon

position:621072:1
position: 621072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:621153:1
position: 621153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:621422-621480:1:exon

position:621422:1
position: 621422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:621480:1
position: 621480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:622015-622160:1:exon

position:622015:1
position: 622015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:622160:1
position: 622160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:623584-623716:1:exon

position:623584:1
position: 623584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:623716:1
position: 623716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:623790-623909:1:exon

position:623790:1
position: 623790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:623909:1
position: 623909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:625386-625522:1:exon

position:625386:1
position: 625386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:625522:1
position: 625522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:626291-626422:1:exon

position:626291:1
position: 626291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:626422:1
position: 626422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:627828-628046:1:exon

position:627828:1
position: 627828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:628046:1
position: 628046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:630093-630223:1:exon

position:630093:1
position: 630093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:630223:1
position: 630223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:630339-630436:1:exon

position:630339:1
position: 630339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:630436:1
position: 630436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:631542-631629:1:exon

position:631542:1
position: 631542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:631629:1
position: 631629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:631730-631812:1:exon

position:631730:1
position: 631730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:631812:1
position: 631812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:632938-633018:1:exon

position:632938:1
position: 632938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:633018:1
position: 633018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:633110-633203:1:exon

position:633110:1
position: 633110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:633203:1
position: 633203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:633289-633405:1:exon

position:633289:1
position: 633289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:633405:1
position: 633405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:634046-634155:1:exon

position:634046:1
position: 634046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:634155:1
position: 634155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:634977-635066:1:exon

position:634977:1
position: 634977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:635066:1
position: 635066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:636615-636763:1:exon

position:636615:1
position: 636615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NCKAP1L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: NCKAP1L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nck-associated protein 1-like
translation: MSLPSVYGDKLAEKLTLLNERGRGVLVRLYHIKKTCSDPRTRPPFLGDKAMEASAKFIQKKFPHLDVRSSTQHLGPVHRDKGDIVRVLSPFYHTFLDLLEFRDHVYELLNTIDASQCYFDIHINYDLTKGYLDLVVTYVSLVLLLARTEERRLLLGLYQCAHEMSHGASEPGFPRLAQMVLEYEHPLKKLPEEFGPHTKALSSALLSLRAPFSRRCQDAEQWRREQLLSLLGPAGDMLSPATCDSMACEYLSLEVMERWIILGFLVVPGALSAPPCLDLWRRALQGSLFVPLVRDEAIAVHKVTEELLGGLKGFGKRVADVRECRDHALAHSPALHRARRSFLRGAVRELAALLEDQPGLLGPKALLVFVALSLCRDEVSWLSRHAEHVTKSKNPEDFSDSRVAELLFLLEQLRALVRRHVRLLRRYHRAYLARFDALVLSDVIQGLSVCPEEESVILSSFVASLSALSAKEVDDKEQFDFTALRLDWFRLQAYTSVSKAPLPLVSNPDIGRAMNLVVFHSLLLDRPEELLEETSDLSHLCFYPRPLDRMFSQSLEDPSMLRFTIAFPLLCAHFSRCPHPMCPEEYSQLEAAALGMCHKFLEELARVGSGCVLEACAEQHNLSQQLLPKHSAATISRARVKKAPKAPPRRDPDRDKPGTESQRRDRTLTTTMDKLHLTLAELSLSLNHVPKFSVFGHTVTPAEYLSSHLETRLTRAIVAMAGYSQPSQEVARPSEVLAGLGAYTALVARLGQALALDTARLLRSVLLQQSQPRDSAGQPTLTAIYTDWYLEALLRQASTGAVLLSPALQAFTTVPREEQPPFSAAEFSDVSEMRALAELIGPYGMKFLSENLMWHVGSQVTELKKLVAENMDTLVQLRCCRPEQRPALLPRLTSAENVLKRMTIIGEILSFRAMAQQGLREVFSQRCPFLMGPIESLADVVTPDTDIQVTLSIFELASAAGVPCEVDPALVTALAGKGTEGVSPEEDYKVSCLLLVFVAVSLPLLAADPASLYNPELDGHNNNVHCLAKAIVQVSAALFTVHNKNIESHLKEFLLLASLSLLQLAQEPDKARLRNHDSIVLLLHLIVSESSFLTLDMLESCFPYVLLRNAFRQLSREPTARNPQH
SIO_010081: NCKAP1L
subclass of: SO_0000673
so part of: NCKAP1L
location: join(602584..602685,604381..604491,605864..605956,606045..606101,607315..607457,608642..608732,609554..609691,611228..611276,612017..612170,613059..613115,615243..615339,616617..616726,619005..619137,621072..621153,621422..621480,622015..622160,623584..623716,623790..623909,625386..625522,626291..626422,627828..628046,630093..630223,630339..630436,631542..631629,631730..631812,632938..633018,633110..633203,633289..633405,634046..634155,634977..635066,636615..636737)
location: region:602584-636737:1
so has part: feature:602584-602685:1:exon
so has part: feature:604381-604491:1:exon
so has part: feature:605864-605956:1:exon
so has part: feature:606045-606101:1:exon
so has part: feature:607315-607457:1:exon
so has part: feature:608642-608732:1:exon
so has part: feature:609554-609691:1:exon
so has part: feature:611228-611276:1:exon
so has part: feature:612017-612170:1:exon
so has part: feature:613059-613115:1:exon
so has part: feature:615243-615339:1:exon
so has part: feature:616617-616726:1:exon
so has part: feature:619005-619137:1:exon
so has part: feature:621072-621153:1:exon
so has part: feature:621422-621480:1:exon
so has part: feature:622015-622160:1:exon
so has part: feature:623584-623716:1:exon
so has part: feature:623790-623909:1:exon
so has part: feature:625386-625522:1:exon
so has part: feature:626291-626422:1:exon
so has part: feature:627828-628046:1:exon
so has part: feature:630093-630223:1:exon
so has part: feature:630339-630436:1:exon
so has part: feature:631542-631629:1:exon
so has part: feature:631730-631812:1:exon
so has part: feature:632938-633018:1:exon
so has part: feature:633110-633203:1:exon
so has part: feature:633289-633405:1:exon
so has part: feature:634046-634155:1:exon
so has part: feature:634977-635066:1:exon
so has part: feature:636615-636737:1:exon

XP_032939200.1
type: Protein
SIO_000068: ncbiprotein

position:602584:1
position: 602584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:636737:1
position: 636737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:602584-602685:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:604381-604491:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:605864-605956:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:606045-606101:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:607315-607457:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:608642-608732:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:609554-609691:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:611228-611276:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:612017-612170:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:613059-613115:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:615243-615339:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:616617-616726:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:619005-619137:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:621072-621153:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:621422-621480:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:622015-622160:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:623584-623716:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:623790-623909:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:625386-625522:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:626291-626422:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:627828-628046:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:630093-630223:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:630339-630436:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:631542-631629:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:631730-631812:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:632938-633018:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:633110-633203:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:633289-633405:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:634046-634155:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:634977-635066:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:636615-636737:1:exon

PDE1B
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: PDE1B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 646751..665825
location: region:646751-665825:1
so has part: feature:646751-665825:1:exon
subclass of: SO_0000010

117009099
type: Gene
SIO_000068: ncbigene

position:646751:1
position: 646751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:665825:1
position: 665825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:646751-665825:1:exon

PDE1B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: PDE1B
product: phosphodiesterase 1B, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_033083292.2
SIO_010081: PDE1B
subclass of: SO_0000673
so part of: PDE1B
location: join(646751..646843,648722..648857,653170..653283,655485..655670,657715..657781,658654..658770,661786..661926,662784..662884,664062..664187,664264..664365,664442..664562,664637..664718,664824..664938,665025..665161,665394..665501,665597..665825)
location: region:646751-665825:1
so has part: feature:646751-646843:1:exon
so has part: feature:648722-648857:1:exon
so has part: feature:653170-653283:1:exon
so has part: feature:655485-655670:1:exon
so has part: feature:657715-657781:1:exon
so has part: feature:658654-658770:1:exon
so has part: feature:661786-661926:1:exon
so has part: feature:662784-662884:1:exon
so has part: feature:664062-664187:1:exon
so has part: feature:664264-664365:1:exon
so has part: feature:664442-664562:1:exon
so has part: feature:664637-664718:1:exon
so has part: feature:664824-664938:1:exon
so has part: feature:665025-665161:1:exon
so has part: feature:665394-665501:1:exon
so has part: feature:665597-665825:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:646751-646843:1:exon

position:646843:1
position: 646843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:648722-648857:1:exon

position:648722:1
position: 648722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:648857:1
position: 648857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:653170-653283:1:exon

position:653170:1
position: 653170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:653283:1
position: 653283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:655485-655670:1:exon

position:655485:1
position: 655485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:655670:1
position: 655670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:657715-657781:1:exon

position:657715:1
position: 657715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:657781:1
position: 657781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:658654-658770:1:exon

position:658654:1
position: 658654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:658770:1
position: 658770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:661786-661926:1:exon

position:661786:1
position: 661786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:661926:1
position: 661926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:662784-662884:1:exon

position:662784:1
position: 662784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:662884:1
position: 662884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:664062-664187:1:exon

position:664062:1
position: 664062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:664187:1
position: 664187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:664264-664365:1:exon

position:664264:1
position: 664264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:664365:1
position: 664365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:664442-664562:1:exon

position:664442:1
position: 664442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:664562:1
position: 664562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:664637-664718:1:exon

position:664637:1
position: 664637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:664718:1
position: 664718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:664824-664938:1:exon

position:664824:1
position: 664824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:664938:1
position: 664938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:665025-665161:1:exon

position:665025:1
position: 665025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:665161:1
position: 665161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:665394-665501:1:exon

position:665394:1
position: 665394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:665501:1
position: 665501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:665597-665825:1:exon

position:665597:1
position: 665597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PDE1B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: PDE1B
product: phosphodiesterase 1B, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_033083291.1
SIO_010081: PDE1B
subclass of: SO_0000673
so part of: PDE1B
location: join(647722..647832,648722..648857,653170..653283,655485..655670,657715..657781,658654..658770,661786..661926,662784..662884,664062..664187,664264..664365,664442..664562,664637..664718,664824..664938,665025..665161,665394..665501,665597..665825)
location: region:647722-665825:1
so has part: feature:647722-647832:1:exon
so has part: feature:648722-648857:1:exon
so has part: feature:653170-653283:1:exon
so has part: feature:655485-655670:1:exon
so has part: feature:657715-657781:1:exon
so has part: feature:658654-658770:1:exon
so has part: feature:661786-661926:1:exon
so has part: feature:662784-662884:1:exon
so has part: feature:664062-664187:1:exon
so has part: feature:664264-664365:1:exon
so has part: feature:664442-664562:1:exon
so has part: feature:664637-664718:1:exon
so has part: feature:664824-664938:1:exon
so has part: feature:665025-665161:1:exon
so has part: feature:665394-665501:1:exon
so has part: feature:665597-665825:1:exon

position:647722:1
position: 647722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:647722-647832:1:exon

position:647832:1
position: 647832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:648722-648857:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:653170-653283:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:655485-655670:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:657715-657781:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:658654-658770:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:661786-661926:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:662784-662884:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:664062-664187:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:664264-664365:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:664442-664562:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:664637-664718:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:664824-664938:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:665025-665161:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:665394-665501:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:665597-665825:1:exon

PDE1B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: PDE1B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B
translation: MEPPRSLPGLERERGAPDAAGGCPSPLDTRAVPARKVWVKLRALLRFLLQQLEAGEVNVEELRRNLECAASLLEAVCSDETRQAQDAEDELRALGSDAAVPSEVRAWLAATFTQQARAKGRRAEEKPKFRSIVHAVQAGIFVERMFRRAFTAVAPSYSSSVLNCLKGLDLWSFDVFSLHRAAEEHSLRTVVLELLTRHGLSTRFKIPGAFLASLLEALESGYGKFRNPYHNQVHAADVTQTVHSVLLRTGLLHCLSEIELLAIVFAAAIHDFEHTGTTNSFHIQTKSDTAILYNDRSVLENHHISAVFRLMQDDELNIFVNLTKDEFAELRALVIDMVLATDMSCHFQQVKSMKTALQQLERLDKSKVLSLLLHAADISHPTKQWAVHSRWTKALMEEFFRQGDKEAELGLPFSPLCDRTSTLVAQSQIGFIDFIVEPTFSVLTDVAEKLVTPLAEDGSKGNPAGTPSSQWRQPSLDEHLELGDIKADLAAFRSTWTKHIQENKQKWKERAASGITNQASIDELSPCEEPAGPAPHSENGDVE
SIO_010081: PDE1B
subclass of: SO_0000673
so part of: PDE1B
location: join(648727..648857,653170..653283,655485..655670,657715..657781,658654..658770,661786..661926,662784..662884,664062..664187,664264..664365,664442..664562,664637..664718,664824..664938,665025..665161,665394..665485)
location: region:648727-665485:1
so has part: feature:648727-648857:1:exon
so has part: feature:653170-653283:1:exon
so has part: feature:655485-655670:1:exon
so has part: feature:657715-657781:1:exon
so has part: feature:658654-658770:1:exon
so has part: feature:661786-661926:1:exon
so has part: feature:662784-662884:1:exon
so has part: feature:664062-664187:1:exon
so has part: feature:664264-664365:1:exon
so has part: feature:664442-664562:1:exon
so has part: feature:664637-664718:1:exon
so has part: feature:664824-664938:1:exon
so has part: feature:665025-665161:1:exon
so has part: feature:665394-665485:1:exon

XP_032939182.1
type: Protein
SIO_000068: ncbiprotein

position:648727:1
position: 648727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:665485:1
position: 665485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:648727-648857:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:653170-653283:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:655485-655670:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:657715-657781:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:658654-658770:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:661786-661926:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:662784-662884:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:664062-664187:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:664264-664365:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:664442-664562:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:664637-664718:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:664824-664938:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:665025-665161:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:665394-665485:1:exon

PDE1B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: PDE1B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B
translation: MEPPRSLPGLERERGAPDAAGGCPSPLDTRAVPARKVWVKLRALLRFLLQQLEAGEVNVEELRRNLECAASLLEAVCSDETRQAQDAEDELRALGSDAAVPSEVRAWLAATFTQQARAKGRRAEEKPKFRSIVHAVQAGIFVERMFRRAFTAVAPSYSSSVLNCLKGLDLWSFDVFSLHRAAEEHSLRTVVLELLTRHGLSTRFKIPGAFLASLLEALESGYGKFRNPYHNQVHAADVTQTVHSVLLRTGLLHCLSEIELLAIVFAAAIHDFEHTGTTNSFHIQTKSDTAILYNDRSVLENHHISAVFRLMQDDELNIFVNLTKDEFAELRALVIDMVLATDMSCHFQQVKSMKTALQQLERLDKSKVLSLLLHAADISHPTKQWAVHSRWTKALMEEFFRQGDKEAELGLPFSPLCDRTSTLVAQSQIGFIDFIVEPTFSVLTDVAEKLVTPLAEDGSKGNPAGTPSSQWRQPSLDEHLELGDIKADLAAFRSTWTKHIQENKQKWKERAASGITNQASIDELSPCEEPAGPAPHSENGDVE
SIO_010081: PDE1B
subclass of: SO_0000673
so part of: PDE1B
location: join(648727..648857,653170..653283,655485..655670,657715..657781,658654..658770,661786..661926,662784..662884,664062..664187,664264..664365,664442..664562,664637..664718,664824..664938,665025..665161,665394..665485)
location: region:648727-665485:1
so has part: feature:648727-648857:1:exon
so has part: feature:653170-653283:1:exon
so has part: feature:655485-655670:1:exon
so has part: feature:657715-657781:1:exon
so has part: feature:658654-658770:1:exon
so has part: feature:661786-661926:1:exon
so has part: feature:662784-662884:1:exon
so has part: feature:664062-664187:1:exon
so has part: feature:664264-664365:1:exon
so has part: feature:664442-664562:1:exon
so has part: feature:664637-664718:1:exon
so has part: feature:664824-664938:1:exon
so has part: feature:665025-665161:1:exon
so has part: feature:665394-665485:1:exon

XP_032939183.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:648727-648857:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:653170-653283:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:655485-655670:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:657715-657781:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:658654-658770:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:661786-661926:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:662784-662884:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:664062-664187:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:664264-664365:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:664442-664562:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:664637-664718:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:664824-664938:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:665025-665161:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:665394-665485:1:exon

PPP1R1A
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: PPP1R1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(669950..684730)
location: region:669950-684730:-1
so has part: feature:669950-684730:-1:exon
subclass of: SO_0000010

117008949
type: Gene
SIO_000068: ncbigene

position:669950:-1
position: 669950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:684730:-1
position: 684730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:669950-684730:-1:exon

PPP1R1A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: PPP1R1A
product: protein phosphatase 1 regulatory inhibitor subunit 1A
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 80% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_033083090.2
SIO_010081: PPP1R1A
subclass of: SO_0000673
so part of: PPP1R1A
location: complement(join(669950..669959,670959..671112,673865..673928,674058..674095,674232..674292,684452..684730))
location: region:669950-684730:-1
so has part: feature:684452-684730:-1:exon
so has part: feature:674232-674292:-1:exon
so has part: feature:674058-674095:-1:exon
so has part: feature:673865-673928:-1:exon
so has part: feature:670959-671112:-1:exon
so has part: feature:669950-669959:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:684452-684730:-1:exon

position:684452:-1
position: 684452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:674232-674292:-1:exon

position:674232:-1
position: 674232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:674292:-1
position: 674292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:674058-674095:-1:exon

position:674058:-1
position: 674058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:674095:-1
position: 674095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:673865-673928:-1:exon

position:673865:-1
position: 673865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:673928:-1
position: 673928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:670959-671112:-1:exon

position:670959:-1
position: 670959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:671112:-1
position: 671112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:669950-669959:-1:exon

position:669959:-1
position: 669959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PPP1R1A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: PPP1R1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein phosphatase 1 regulatory subunit 1A
translation: MEPNSPRKIQFTVPLLEPHLDPEAAEQIRRRRPTPANLVLSSDQSSPEIDEDRLPNPLLKSGLAMSPRQRKKVSRTTPTMKGTPGDGTPDTGTPQSGTPQSGDPPGRDPRDPPAGSALGTGATESPGTARDSRWN
SIO_010081: PPP1R1A
subclass of: SO_0000673
so part of: PPP1R1A
location: complement(join(669950..669959,670959..671112,673865..673928,674058..674095,674232..674292,684452..684532))
location: region:669950-684532:-1
so has part: feature:684452-684532:-1:exon
so has part: feature:674232-674292:-1:exon
so has part: feature:674058-674095:-1:exon
so has part: feature:673865-673928:-1:exon
so has part: feature:670959-671112:-1:exon
so has part: feature:669950-669959:-1:exon

XP_032938981.1
type: Protein
SIO_000068: ncbiprotein

position:684532:-1
position: 684532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:684452-684532:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:674232-674292:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:674058-674095:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:673865-673928:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:670959-671112:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:669950-669959:-1:exon

TESPA1
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: TESPA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 696978..>702685
location: region:696978-702685:1
so has part: feature:696978-702685:1:exon
subclass of: SO_0000010

117008950
type: Gene
SIO_000068: ncbigene

position:696978:1
position: 696978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:702685:1
position: 702685
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:696978-702685:1:exon

TESPA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: TESPA1
product: thymocyte expressed, positive selection associated 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_033083091.1
SIO_010081: TESPA1
subclass of: SO_0000673
so part of: TESPA1
location: join(696978..697104,698880..699088,700702..701195,702656..>702685)
location: region:696978-702685:1
so has part: feature:696978-697104:1:exon
so has part: feature:698880-699088:1:exon
so has part: feature:700702-701195:1:exon
so has part: feature:702656-702685:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:696978-697104:1:exon

position:697104:1
position: 697104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:698880-699088:1:exon

position:698880:1
position: 698880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:699088:1
position: 699088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:700702-701195:1:exon

position:700702:1
position: 700702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:701195:1
position: 701195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:702656-702685:1:exon

position:702656:1
position: 702656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TESPA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: TESPA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein TESPA1
translation: MASSVPSDVTSDVTSSSSLSHVLSQWQSDPEAILLSLGFAGPDPGVSARVPPRFFSCPSRASGIDLGLFLRAQERRQRMEDTSLQLASRFQQFQALAATADAFFCLYSHVSRIPLQRIAAPRPYRDIPDSVEPRLKRAVTSLCLYTGRGHGDIPGGGTWGVTPNTPGVGGLRKDRDTRRLSATWDAVGTAWGHPERCCPHIRGGGGAGGDTRDTRGVGDTPESPRGHPGGTPGTVPKNPERRGEEERAGMEEVLSEEDDDDD
SIO_010081: TESPA1
subclass of: SO_0000673
so part of: TESPA1
location: join(697052..697104,698880..699088,700702..701195,702656..>702685)
location: region:697052-702685:1
so has part: feature:697052-697104:1:exon
so has part: feature:698880-699088:1:exon
so has part: feature:700702-701195:1:exon
so has part: feature:702656-702685:1:exon

XP_032938982.1
type: Protein
SIO_000068: ncbiprotein

position:697052:1
position: 697052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:697052-697104:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:698880-699088:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:700702-701195:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:702656-702685:1:exon

LOC117008951
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: LOC117008951
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <712052..>712501
location: region:712052-712501:1
so has part: feature:712052-712501:1:exon
subclass of: SO_0000010

117008951
type: Gene
SIO_000068: ncbigene

position:712052:1
position: 712052
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:712501:1
position: 712501
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:712052-712501:1:exon

LOC117008951
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: LOC117008951
product: protein TsetseEP-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 83% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_033083093.1
SIO_010081: LOC117008951
subclass of: SO_0000673
so part of: LOC117008951
location: <712052..>712501
location: region:712052-712501:1
so has part: feature:712052-712501:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:712052-712501:1:exon

LOC117008951
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: LOC117008951
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein TsetseEP-like
translation: LLDPENEPHALLDPENEPQALLDPENEPHPLLGLLGDPENEPEALLDPENEPEALLDPENEPHAFWWLLDPENEPRALLDPENEALEEEEPDVSPKESENPTESSEESEESDEEPEESEDPKESPEESEDAEENPEESEDPKENPEESED
SIO_010081: LOC117008951
subclass of: SO_0000673
so part of: LOC117008951
location: <712052..>712501
location: region:712052-712501:1
so has part: feature:712052-712501:1:exon

XP_032938984.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:712052-712501:1:exon

LOC117009188
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: LOC117009188
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 712526..715143
location: region:712526-715143:1
so has part: feature:712526-715143:1:exon
subclass of: SO_0000011

117009188
type: Gene
SIO_000068: ncbigene

position:712526:1
position: 712526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:715143:1
position: 715143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:712526-715143:1:exon

LOC117009188
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 91951
nc RNA class: lncRNA
gene: LOC117009188
product: uncharacterized LOC117009188
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004420437.1
SIO_010081: LOC117009188
subclass of: SO_0000673
so part of: LOC117009188
location: join(712526..712991,714710..714800,714955..715143)
location: region:712526-715143:1
so has part: feature:712526-712991:1:exon
so has part: feature:714710-714800:1:exon
so has part: feature:714955-715143:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:712526-712991:1:exon

position:712991:1
position: 712991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:714710-714800:1:exon

position:714710:1
position: 714710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:714800:1
position: 714800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:714955-715143:1:exon

position:714955:1
position: 714955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NEUROD4
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: NEUROD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 728016..728966
location: region:728016-728966:1
so has part: feature:728016-728966:1:exon
subclass of: SO_0000010

117009168
type: Gene
SIO_000068: ncbigene

position:728016:1
position: 728016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:728966:1
position: 728966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:728016-728966:1:exon

NEUROD4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: NEUROD4
product: neuronal differentiation 4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
transcript id: XM_033083406.1
SIO_010081: NEUROD4
subclass of: SO_0000673
so part of: NEUROD4
location: 728016..728966
location: region:728016-728966:1
so has part: feature:728016-728966:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:728016-728966:1:exon

NEUROD4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: NEUROD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: neurogenic differentiation factor 4
translation: MPQTCPKPSDMAELSSQGWVDETRAAKEQNNENFALVPTLPEERDSAEEEEEEEEEGEKPKRRGPKKKKMTKARLERFRARRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETGQTPEGKNFVEMLCKGLSQPTSNLVAGCLQLGSQPLFLEKHEEKSCEPGLPGHSFGYQGLPSPPYGSMESHLLHLKPPAFKSLVDASLGCSTPPYEGPLTPPLSVSGNFALKQDGSPELEKSFPFLGHFPPGSLATAQHGHGSHFQSSVGRYEIPLDVGYEAFAPHVGGTQLGAIFSE
SIO_010081: NEUROD4
subclass of: SO_0000673
so part of: NEUROD4
location: 728016..728966
location: region:728016-728966:1
so has part: feature:728016-728966:1:exon

XP_032939297.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:728016-728966:1:exon

ENDOU
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: ENDOU
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(745873..762613)
location: region:745873-762613:-1
so has part: feature:745873-762613:-1:exon
subclass of: SO_0000010

117009148
type: Gene
SIO_000068: ncbigene

position:745873:-1
position: 745873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:762613:-1
position: 762613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:745873-762613:-1:exon

ENDOU
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: ENDOU
product: endonuclease, poly(U) specific
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_033083380.1
SIO_010081: ENDOU
subclass of: SO_0000673
so part of: ENDOU
location: complement(join(745873..745987,748328..748470,750906..751012,752458..752571,754076..754275,754353..754524,756366..756500,762377..762613))
location: region:745873-762613:-1
so has part: feature:762377-762613:-1:exon
so has part: feature:756366-756500:-1:exon
so has part: feature:754353-754524:-1:exon
so has part: feature:754076-754275:-1:exon
so has part: feature:752458-752571:-1:exon
so has part: feature:750906-751012:-1:exon
so has part: feature:748328-748470:-1:exon
so has part: feature:745873-745987:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:762377-762613:-1:exon

position:762377:-1
position: 762377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:756366-756500:-1:exon

position:756366:-1
position: 756366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:756500:-1
position: 756500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:754353-754524:-1:exon

position:754353:-1
position: 754353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:754524:-1
position: 754524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:754076-754275:-1:exon

position:754076:-1
position: 754076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:754275:-1
position: 754275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:752458-752571:-1:exon

position:752458:-1
position: 752458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:752571:-1
position: 752571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:750906-751012:-1:exon

position:750906:-1
position: 750906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:751012:-1
position: 751012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:748328-748470:-1:exon

position:748328:-1
position: 748328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:748470:-1
position: 748470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:745873-745987:-1:exon

position:745987:-1
position: 745987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ENDOU
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: ENDOU
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: poly(U)-specific endoribonuclease
translation: MELWILLLGAGIAAGHLYTAPGSCQGRCGEPFSAGDECHCHPECDTERNCCEDFDRHCGDAGFSRSRDSISEPELLQLSEQLYQLDLNKARPGDIALNPQHRAEPGDTGDKRDLSPQPLFKFVNEELFSKPTYASFIKLLDNYQRATGTEEEVTAEELREQEDFLQEVMKTQLMKKLFVFLKGKNRCSSEQEFLELLREMWFGLYSRGDGERDSSGFEHVFSGEVKKGKVSGFHNWIRFYLLEKQQLLNYLSHSFDGPWDSFPDVLGLRFSWDGFHKELGSAFIGSSPEFELGLYSLCFLARPGRACHLSLGGHPLSIQTFPWSKGTASSGRSFIATAYVMSP
SIO_010081: ENDOU
subclass of: SO_0000673
so part of: ENDOU
location: complement(join(745873..745987,748328..748470,750906..751012,752458..752571,754076..754275,754353..754524,756366..756500,762377..762422))
location: region:745873-762422:-1
so has part: feature:762377-762422:-1:exon
so has part: feature:756366-756500:-1:exon
so has part: feature:754353-754524:-1:exon
so has part: feature:754076-754275:-1:exon
so has part: feature:752458-752571:-1:exon
so has part: feature:750906-751012:-1:exon
so has part: feature:748328-748470:-1:exon
so has part: feature:745873-745987:-1:exon

XP_032939271.1
type: Protein
SIO_000068: ncbiprotein

position:762422:-1
position: 762422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:762377-762422:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:756366-756500:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:754353-754524:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:754076-754275:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:752458-752571:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:750906-751012:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:748328-748470:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:745873-745987:-1:exon

RAPGEF3
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: RAPGEF3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(766542..796795)
location: region:766542-796795:-1
so has part: feature:766542-796795:-1:exon
subclass of: SO_0000010

117009189
type: Gene
SIO_000068: ncbigene

position:766542:-1
position: 766542
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:796795:-1
position: 796795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:766542-796795:-1:exon

RAPGEF3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: RAPGEF3
product: Rap guanine nucleotide exchange factor 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_033083434.1
SIO_010081: RAPGEF3
subclass of: SO_0000673
so part of: RAPGEF3
location: complement(join(766542..766688,766955..767026,768548..768602,769380..769444,769526..769613,770353..770403,770497..770587,772269..772450,773392..773517,775255..775352,775436..775582,775653..775734,776523..776562,777374..777456,777546..777696,778636..778714,780213..780301,781509..781603,783051..783197,784222..784298,785609..785669,786355..786439,787322..787487,788073..788191,788752..788858,789576..789629,796508..796795))
location: region:766542-796795:-1
so has part: feature:796508-796795:-1:exon
so has part: feature:789576-789629:-1:exon
so has part: feature:788752-788858:-1:exon
so has part: feature:788073-788191:-1:exon
so has part: feature:787322-787487:-1:exon
so has part: feature:786355-786439:-1:exon
so has part: feature:785609-785669:-1:exon
so has part: feature:784222-784298:-1:exon
so has part: feature:783051-783197:-1:exon
so has part: feature:781509-781603:-1:exon
so has part: feature:780213-780301:-1:exon
so has part: feature:778636-778714:-1:exon
so has part: feature:777546-777696:-1:exon
so has part: feature:777374-777456:-1:exon
so has part: feature:776523-776562:-1:exon
so has part: feature:775653-775734:-1:exon
so has part: feature:775436-775582:-1:exon
so has part: feature:775255-775352:-1:exon
so has part: feature:773392-773517:-1:exon
so has part: feature:772269-772450:-1:exon
so has part: feature:770497-770587:-1:exon
so has part: feature:770353-770403:-1:exon
so has part: feature:769526-769613:-1:exon
so has part: feature:769380-769444:-1:exon
so has part: feature:768548-768602:-1:exon
so has part: feature:766955-767026:-1:exon
so has part: feature:766542-766688:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:796508-796795:-1:exon

position:796508:-1
position: 796508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:789576-789629:-1:exon

position:789576:-1
position: 789576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:789629:-1
position: 789629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:788752-788858:-1:exon

position:788752:-1
position: 788752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:788858:-1
position: 788858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:788073-788191:-1:exon

position:788073:-1
position: 788073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:788191:-1
position: 788191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:787322-787487:-1:exon

position:787322:-1
position: 787322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:787487:-1
position: 787487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:786355-786439:-1:exon

position:786355:-1
position: 786355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:786439:-1
position: 786439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:785609-785669:-1:exon

position:785609:-1
position: 785609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:785669:-1
position: 785669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:784222-784298:-1:exon

position:784222:-1
position: 784222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:784298:-1
position: 784298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:783051-783197:-1:exon

position:783051:-1
position: 783051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:783197:-1
position: 783197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:781509-781603:-1:exon

position:781509:-1
position: 781509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:781603:-1
position: 781603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:780213-780301:-1:exon

position:780213:-1
position: 780213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:780301:-1
position: 780301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:778636-778714:-1:exon

position:778636:-1
position: 778636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:778714:-1
position: 778714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:777546-777696:-1:exon

position:777546:-1
position: 777546
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:777696:-1
position: 777696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:777374-777456:-1:exon

position:777374:-1
position: 777374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:777456:-1
position: 777456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:776523-776562:-1:exon

position:776523:-1
position: 776523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:776562:-1
position: 776562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:775653-775734:-1:exon

position:775653:-1
position: 775653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:775734:-1
position: 775734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:775436-775582:-1:exon

position:775436:-1
position: 775436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:775582:-1
position: 775582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:775255-775352:-1:exon

position:775255:-1
position: 775255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:775352:-1
position: 775352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:773392-773517:-1:exon

position:773392:-1
position: 773392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:773517:-1
position: 773517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:772269-772450:-1:exon

position:772269:-1
position: 772269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:772450:-1
position: 772450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:770497-770587:-1:exon

position:770497:-1
position: 770497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:770587:-1
position: 770587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:770353-770403:-1:exon

position:770353:-1
position: 770353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:770403:-1
position: 770403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:769526-769613:-1:exon

position:769526:-1
position: 769526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:769613:-1
position: 769613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:769380-769444:-1:exon

position:769380:-1
position: 769380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:769444:-1
position: 769444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:768548-768602:-1:exon

position:768548:-1
position: 768548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:768602:-1
position: 768602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:766955-767026:-1:exon

position:766955:-1
position: 766955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:767026:-1
position: 767026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:766542-766688:-1:exon

position:766688:-1
position: 766688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RAPGEF3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: RAPGEF3
product: Rap guanine nucleotide exchange factor 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_033083433.1
SIO_010081: RAPGEF3
subclass of: SO_0000673
so part of: RAPGEF3
location: complement(join(766542..766688,766955..767026,768548..768602,769380..769444,769526..769613,770353..770403,770497..770587,772269..772450,773392..773517,775255..775352,775436..775582,775653..775734,776523..776562,777374..777456,777546..777696,778636..778714,780213..780304,781509..781603,783051..783197,784222..784298,785609..785669,786355..786439,787322..787487,788073..788191,788752..788858,789576..789629,796508..796795))
location: region:766542-796795:-1
so has part: feature:796508-796795:-1:exon
so has part: feature:789576-789629:-1:exon
so has part: feature:788752-788858:-1:exon
so has part: feature:788073-788191:-1:exon
so has part: feature:787322-787487:-1:exon
so has part: feature:786355-786439:-1:exon
so has part: feature:785609-785669:-1:exon
so has part: feature:784222-784298:-1:exon
so has part: feature:783051-783197:-1:exon
so has part: feature:781509-781603:-1:exon
so has part: feature:780213-780304:-1:exon
so has part: feature:778636-778714:-1:exon
so has part: feature:777546-777696:-1:exon
so has part: feature:777374-777456:-1:exon
so has part: feature:776523-776562:-1:exon
so has part: feature:775653-775734:-1:exon
so has part: feature:775436-775582:-1:exon
so has part: feature:775255-775352:-1:exon
so has part: feature:773392-773517:-1:exon
so has part: feature:772269-772450:-1:exon
so has part: feature:770497-770587:-1:exon
so has part: feature:770353-770403:-1:exon
so has part: feature:769526-769613:-1:exon
so has part: feature:769380-769444:-1:exon
so has part: feature:768548-768602:-1:exon
so has part: feature:766955-767026:-1:exon
so has part: feature:766542-766688:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:796508-796795:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:789576-789629:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:788752-788858:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:788073-788191:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:787322-787487:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:786355-786439:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:785609-785669:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:784222-784298:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:783051-783197:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:781509-781603:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:780213-780304:-1:exon

position:780304:-1
position: 780304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:778636-778714:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:777546-777696:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:777374-777456:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:776523-776562:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:775653-775734:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:775436-775582:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:775255-775352:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:773392-773517:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:772269-772450:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:770497-770587:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:770353-770403:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:769526-769613:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:769380-769444:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:768548-768602:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:766955-767026:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:766542-766688:-1:exon

RAPGEF3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: RAPGEF3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: rap guanine nucleotide exchange factor 3 isoform X2
translation: MKVCGAGPGRAAAGGARGGAGPGIAPPQPPGGPGADGARIAALLRRMHLFRSSSYEVRLEGAGGSLPGIQGIRWTPLLEPEPGLDCGHSLGQATSERIWRAGRLLLAHLSLARPGLIRDHKHGLRQHRHCCSGRDLVLWLLSSGAVQARGQALGIGQVLLDSGVLTPVRQEWQFQDKPSHFYRFAELEPGPERPRDPEELLEALGFLAQLGPDALLTTALRKPPAQRTPDELELIFEELLHIKAVAHLSNAVKRELAAVLMFEGHQRAGTVLFSQGDKGTSWFIIWKGSVNVVTHGKGVVATLHEGDDFGQLALVNEAPRAATILLREDNCHLLRVDKRDFNRILRDVEANTVRLKEHGRVVLVLQRDLQGGTARSSRYLVVAGTPEKILEHLLEFMRLDATLYDPEDTLLGDFLLTYTVFMPTSQLCRALLHHFLAEPLEGSQPDAAVYSLRKRRKILRLLSQWVLLYGRLLQGDRSTTALLQNLADLASRDPQLGGLGQEQGQERRRQRGLENGDGSVSPQPKTRSSPPWLGTPEDPTPDIPGTLRAQDKVPYEIFRADHSCLAPLLPVNASVRDVLRALSPSLDRDSEHVLVRLNSAGDRAVLPPDAVGVFTALGFNERLFVASVDELGDLSPHPEQLGPPAGSWDTLELISSKELAGHLTEHDWNLFRSVHQVEMIHYIVGPHKFHEVATANLARLLRRFQELQFWVATELCLCPELGRRAQLLRKFIKVAAHLKEQKNLNSFFAVMFGVSNTAVTRLAKTWERLPHKIRKLHSALERMLDPSWNHRVYRLAVAKLSPPIIPFIPLLLKDMTFIHEGNRTVTENLINFEKMHMMAKTVRVLQRCRSHAHAPLSPLRTRSSHRPEDPKAVRISTCSEQSLSGRSPVSTWAYLQHLRAIDSQKELLRLSRELEP
SIO_010081: RAPGEF3
subclass of: SO_0000673
so part of: RAPGEF3
location: complement(join(766570..766688,766955..767026,768548..768602,769380..769444,769526..769613,770353..770403,770497..770587,772269..772450,773392..773517,775255..775352,775436..775582,775653..775734,776523..776562,777374..777456,777546..777696,778636..778714,780213..780301,781509..781603,783051..783197,784222..784298,785609..785669,786355..786439,787322..787487,788073..788191,788752..788858,789576..789629,796508..796729))
location: region:766570-796729:-1
so has part: feature:796508-796729:-1:exon
so has part: feature:789576-789629:-1:exon
so has part: feature:788752-788858:-1:exon
so has part: feature:788073-788191:-1:exon
so has part: feature:787322-787487:-1:exon
so has part: feature:786355-786439:-1:exon
so has part: feature:785609-785669:-1:exon
so has part: feature:784222-784298:-1:exon
so has part: feature:783051-783197:-1:exon
so has part: feature:781509-781603:-1:exon
so has part: feature:780213-780301:-1:exon
so has part: feature:778636-778714:-1:exon
so has part: feature:777546-777696:-1:exon
so has part: feature:777374-777456:-1:exon
so has part: feature:776523-776562:-1:exon
so has part: feature:775653-775734:-1:exon
so has part: feature:775436-775582:-1:exon
so has part: feature:775255-775352:-1:exon
so has part: feature:773392-773517:-1:exon
so has part: feature:772269-772450:-1:exon
so has part: feature:770497-770587:-1:exon
so has part: feature:770353-770403:-1:exon
so has part: feature:769526-769613:-1:exon
so has part: feature:769380-769444:-1:exon
so has part: feature:768548-768602:-1:exon
so has part: feature:766955-767026:-1:exon
so has part: feature:766570-766688:-1:exon

XP_032939325.1
type: Protein
SIO_000068: ncbiprotein

position:766570:-1
position: 766570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:796729:-1
position: 796729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:796508-796729:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:789576-789629:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:788752-788858:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:788073-788191:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:787322-787487:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:786355-786439:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:785609-785669:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:784222-784298:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:783051-783197:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:781509-781603:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:780213-780301:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:778636-778714:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:777546-777696:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:777374-777456:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:776523-776562:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:775653-775734:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:775436-775582:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:775255-775352:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:773392-773517:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:772269-772450:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:770497-770587:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:770353-770403:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:769526-769613:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:769380-769444:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:768548-768602:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:766955-767026:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:766570-766688:-1:exon

RAPGEF3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: RAPGEF3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: rap guanine nucleotide exchange factor 3 isoform X1
translation: MKVCGAGPGRAAAGGARGGAGPGIAPPQPPGGPGADGARIAALLRRMHLFRSSSYEVRLEGAGGSLPGIQGIRWTPLLEPEPGLDCGHSLGQATSERIWRAGRLLLAHLSLARPGLIRDHKHGLRQHRHCCSGRDLVLWLLSSGAVQARGQALGIGQVLLDSGVLTPVRQEWQFQDKPSHFYRFAELEPGPERPRDPEELLEALGFLAQLGPDALLTTALRKPPAQRTPDELELIFEELLHIKAVAHLSNAVKRELAAVLMFEGHQRAGTVLFSQGDKGTSWFIIWKGSVNVVTHGKGVVATLHEGDDFGQLALVNEAPRAATILLREDNCHLLRVDKRDFNRILRDVEANTVRLKEHGRVVLVLQRDLQGGTARSSSRYLVVAGTPEKILEHLLEFMRLDATLYDPEDTLLGDFLLTYTVFMPTSQLCRALLHHFLAEPLEGSQPDAAVYSLRKRRKILRLLSQWVLLYGRLLQGDRSTTALLQNLADLASRDPQLGGLGQEQGQERRRQRGLENGDGSVSPQPKTRSSPPWLGTPEDPTPDIPGTLRAQDKVPYEIFRADHSCLAPLLPVNASVRDVLRALSPSLDRDSEHVLVRLNSAGDRAVLPPDAVGVFTALGFNERLFVASVDELGDLSPHPEQLGPPAGSWDTLELISSKELAGHLTEHDWNLFRSVHQVEMIHYIVGPHKFHEVATANLARLLRRFQELQFWVATELCLCPELGRRAQLLRKFIKVAAHLKEQKNLNSFFAVMFGVSNTAVTRLAKTWERLPHKIRKLHSALERMLDPSWNHRVYRLAVAKLSPPIIPFIPLLLKDMTFIHEGNRTVTENLINFEKMHMMAKTVRVLQRCRSHAHAPLSPLRTRSSHRPEDPKAVRISTCSEQSLSGRSPVSTWAYLQHLRAIDSQKELLRLSRELEP
SIO_010081: RAPGEF3
subclass of: SO_0000673
so part of: RAPGEF3
location: complement(join(766570..766688,766955..767026,768548..768602,769380..769444,769526..769613,770353..770403,770497..770587,772269..772450,773392..773517,775255..775352,775436..775582,775653..775734,776523..776562,777374..777456,777546..777696,778636..778714,780213..780304,781509..781603,783051..783197,784222..784298,785609..785669,786355..786439,787322..787487,788073..788191,788752..788858,789576..789629,796508..796729))
location: region:766570-796729:-1
so has part: feature:796508-796729:-1:exon
so has part: feature:789576-789629:-1:exon
so has part: feature:788752-788858:-1:exon
so has part: feature:788073-788191:-1:exon
so has part: feature:787322-787487:-1:exon
so has part: feature:786355-786439:-1:exon
so has part: feature:785609-785669:-1:exon
so has part: feature:784222-784298:-1:exon
so has part: feature:783051-783197:-1:exon
so has part: feature:781509-781603:-1:exon
so has part: feature:780213-780304:-1:exon
so has part: feature:778636-778714:-1:exon
so has part: feature:777546-777696:-1:exon
so has part: feature:777374-777456:-1:exon
so has part: feature:776523-776562:-1:exon
so has part: feature:775653-775734:-1:exon
so has part: feature:775436-775582:-1:exon
so has part: feature:775255-775352:-1:exon
so has part: feature:773392-773517:-1:exon
so has part: feature:772269-772450:-1:exon
so has part: feature:770497-770587:-1:exon
so has part: feature:770353-770403:-1:exon
so has part: feature:769526-769613:-1:exon
so has part: feature:769380-769444:-1:exon
so has part: feature:768548-768602:-1:exon
so has part: feature:766955-767026:-1:exon
so has part: feature:766570-766688:-1:exon

XP_032939324.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:796508-796729:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:789576-789629:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:788752-788858:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:788073-788191:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:787322-787487:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:786355-786439:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:785609-785669:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:784222-784298:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:783051-783197:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:781509-781603:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:780213-780304:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:778636-778714:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:777546-777696:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:777374-777456:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:776523-776562:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:775653-775734:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:775436-775582:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:775255-775352:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:773392-773517:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:772269-772450:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:770497-770587:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:770353-770403:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:769526-769613:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:769380-769444:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:768548-768602:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:766955-767026:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:766570-766688:-1:exon

SLC48A1
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: SLC48A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 804317..814105
location: region:804317-814105:1
so has part: feature:804317-814105:1:exon
subclass of: SO_0000010

117009200
type: Gene
SIO_000068: ncbigene

position:804317:1
position: 804317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:814105:1
position: 814105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:804317-814105:1:exon

SLC48A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: SLC48A1
product: solute carrier family 48 member 1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083446.2
SIO_010081: SLC48A1
subclass of: SO_0000673
so part of: SLC48A1
location: join(804317..804514,810210..810377,812256..812425,814074..814105)
location: region:804317-814105:1
so has part: feature:804317-804514:1:exon
so has part: feature:810210-810377:1:exon
so has part: feature:812256-812425:1:exon
so has part: feature:814074-814105:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:804317-804514:1:exon

position:804514:1
position: 804514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:810210-810377:1:exon

position:810210:1
position: 810210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:810377:1
position: 810377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:812256-812425:1:exon

position:812256:1
position: 812256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:812425:1
position: 812425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:814074-814105:1:exon

position:814074:1
position: 814074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SLC48A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: SLC48A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: heme transporter HRG1
translation: MALSGALALRVAYASFGALSGLSAFCAWSIVPALRQPATAAAGGLSGVLALWALITHVMYLQDYWRTWLKGLRFFLAVGILFCALSGLGFCTFLALAISQHQSLTDPRSFYLSCVWSFMALKWALLLSLYSNRYRAEFADISILSDF
SIO_010081: SLC48A1
subclass of: SO_0000673
so part of: SLC48A1
location: join(804376..804514,810210..810377,812256..812392)
location: region:804376-812392:1
so has part: feature:804376-804514:1:exon
so has part: feature:810210-810377:1:exon
so has part: feature:812256-812392:1:exon

XP_032939337.1
type: Protein
SIO_000068: ncbiprotein

position:804376:1
position: 804376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:812392:1
position: 812392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:804376-804514:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:810210-810377:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:812256-812392:1:exon

HDAC7
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: HDAC7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(817270..912421)
location: region:817270-912421:-1
so has part: feature:817270-912421:-1:exon
subclass of: SO_0000010

117009149
type: Gene
SIO_000068: ncbigene

position:817270:-1
position: 817270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:912421:-1
position: 912421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:817270-912421:-1:exon

HDAC7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: HDAC7
product: histone deacetylase 7, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_033083382.1
SIO_010081: HDAC7
subclass of: SO_0000673
so part of: HDAC7
location: complement(join(817270..819578,821202..821340,822519..822603,823446..823579,825709..825827,826712..826809,827866..827985,829799..829886,829995..830050,830796..830903,832719..832768,833452..833572,835171..835304,836537..836744,839202..839396,840598..840806,842069..842264,844559..844662,846005..846124,846775..846884,848026..848137,849346..849436,853899..854089,912280..912421))
location: region:817270-912421:-1
so has part: feature:912280-912421:-1:exon
so has part: feature:853899-854089:-1:exon
so has part: feature:849346-849436:-1:exon
so has part: feature:848026-848137:-1:exon
so has part: feature:846775-846884:-1:exon
so has part: feature:846005-846124:-1:exon
so has part: feature:844559-844662:-1:exon
so has part: feature:842069-842264:-1:exon
so has part: feature:840598-840806:-1:exon
so has part: feature:839202-839396:-1:exon
so has part: feature:836537-836744:-1:exon
so has part: feature:835171-835304:-1:exon
so has part: feature:833452-833572:-1:exon
so has part: feature:832719-832768:-1:exon
so has part: feature:830796-830903:-1:exon
so has part: feature:829995-830050:-1:exon
so has part: feature:829799-829886:-1:exon
so has part: feature:827866-827985:-1:exon
so has part: feature:826712-826809:-1:exon
so has part: feature:825709-825827:-1:exon
so has part: feature:823446-823579:-1:exon
so has part: feature:822519-822603:-1:exon
so has part: feature:821202-821340:-1:exon
so has part: feature:817270-819578:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:912280-912421:-1:exon

position:912280:-1
position: 912280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:853899-854089:-1:exon

position:853899:-1
position: 853899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:854089:-1
position: 854089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:849346-849436:-1:exon

position:849346:-1
position: 849346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:849436:-1
position: 849436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:848026-848137:-1:exon

position:848026:-1
position: 848026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:848137:-1
position: 848137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:846775-846884:-1:exon

position:846775:-1
position: 846775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:846884:-1
position: 846884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:846005-846124:-1:exon

position:846005:-1
position: 846005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:846124:-1
position: 846124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:844559-844662:-1:exon

position:844559:-1
position: 844559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:844662:-1
position: 844662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:842069-842264:-1:exon

position:842069:-1
position: 842069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:842264:-1
position: 842264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:840598-840806:-1:exon

position:840598:-1
position: 840598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:840806:-1
position: 840806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:839202-839396:-1:exon

position:839202:-1
position: 839202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:839396:-1
position: 839396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:836537-836744:-1:exon

position:836537:-1
position: 836537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:836744:-1
position: 836744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:835171-835304:-1:exon

position:835171:-1
position: 835171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:835304:-1
position: 835304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:833452-833572:-1:exon

position:833452:-1
position: 833452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:833572:-1
position: 833572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:832719-832768:-1:exon

position:832719:-1
position: 832719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:832768:-1
position: 832768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:830796-830903:-1:exon

position:830796:-1
position: 830796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:830903:-1
position: 830903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:829995-830050:-1:exon

position:829995:-1
position: 829995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:830050:-1
position: 830050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:829799-829886:-1:exon

position:829799:-1
position: 829799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:829886:-1
position: 829886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:827866-827985:-1:exon

position:827866:-1
position: 827866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:827985:-1
position: 827985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:826712-826809:-1:exon

position:826712:-1
position: 826712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:826809:-1
position: 826809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:825709-825827:-1:exon

position:825709:-1
position: 825709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:825827:-1
position: 825827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:823446-823579:-1:exon

position:823446:-1
position: 823446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:823579:-1
position: 823579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:822519-822603:-1:exon

position:822519:-1
position: 822519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:822603:-1
position: 822603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:821202-821340:-1:exon

position:821202:-1
position: 821202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:821340:-1
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reference: sequence
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urn:…
SIO_000300: 24
SIO_000628: feature:817270-819578:-1:exon

position:819578:-1
position: 819578
reference: sequence
type: ReverseStrandPosition
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HDAC7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: HDAC7
product: histone deacetylase 7, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_033083383.1
SIO_010081: HDAC7
subclass of: SO_0000673
so part of: HDAC7
location: complement(join(817270..819578,821202..821340,822519..822603,823446..823579,825709..825827,826712..826809,827866..827985,829799..829886,829995..830050,830796..830903,832719..832768,833452..833572,835171..835304,836537..836744,839202..839396,840598..840806,842069..842264,844559..844662,846005..846124,846775..846884,848026..848137,849346..849436,853899..854089,898438..898538))
location: region:817270-898538:-1
so has part: feature:898438-898538:-1:exon
so has part: feature:853899-854089:-1:exon
so has part: feature:849346-849436:-1:exon
so has part: feature:848026-848137:-1:exon
so has part: feature:846775-846884:-1:exon
so has part: feature:846005-846124:-1:exon
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so has part: feature:842069-842264:-1:exon
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position:898538:-1
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reference: sequence
type: ReverseStrandPosition
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reference: sequence
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SIO_000300: 16
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SIO_000300: 17
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SIO_000300: 18
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SIO_000300: 19
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SIO_000300: 22
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SIO_000300: 23
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urn:…
SIO_000300: 24
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HDAC7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: HDAC7
product: histone deacetylase 7, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_033083385.1
SIO_010081: HDAC7
subclass of: SO_0000673
so part of: HDAC7
location: complement(join(817270..819578,821202..821340,822519..822603,823446..823579,825709..825827,826712..826809,827866..827985,829799..829886,829995..830050,830796..830903,832719..832768,833452..833572,835171..835304,836537..836744,839202..839396,840598..840806,842069..842264,844559..844662,846005..846124,846775..846884,848026..848137,849346..849436,853899..854089,877568..877884))
location: region:817270-877884:-1
so has part: feature:877568-877884:-1:exon
so has part: feature:853899-854089:-1:exon
so has part: feature:849346-849436:-1:exon
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so has part: feature:822519-822603:-1:exon
so has part: feature:821202-821340:-1:exon
so has part: feature:817270-819578:-1:exon

position:877884:-1
position: 877884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
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position:877568:-1
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reference: sequence
type: ReverseStrandPosition
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urn:…
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urn:…
SIO_000300: 24
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HDAC7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: HDAC7
product: histone deacetylase 7, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_033083384.1
SIO_010081: HDAC7
subclass of: SO_0000673
so part of: HDAC7
location: complement(join(817270..819578,821202..821340,822519..822603,823446..823579,825709..825827,826712..826809,827866..827985,829799..829886,829995..830050,830796..830903,832719..832768,833452..833572,835171..835304,836537..836744,839202..839396,840598..840806,842069..842264,844559..844662,846775..846884,848026..848137,849346..849436,853899..854089,877065..877435))
location: region:817270-877435:-1
so has part: feature:877065-877435:-1:exon
so has part: feature:853899-854089:-1:exon
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so has part: feature:821202-821340:-1:exon
so has part: feature:817270-819578:-1:exon

position:877435:-1
position: 877435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
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position: 877065
reference: sequence
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urn:…
SIO_000300: 23
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HDAC7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: HDAC7
product: histone deacetylase 7, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_033083381.1
SIO_010081: HDAC7
subclass of: SO_0000673
so part of: HDAC7
location: complement(join(817270..819578,821202..821340,822519..822603,823446..823579,825709..825827,826712..826809,827866..827985,829799..829886,829995..830050,830796..830903,832719..832768,833452..833572,835171..835304,836537..836744,839202..839396,840598..840806,842069..842264,844559..844662,846005..846124,846775..846884,848026..848137,849346..849436,853899..854089,877065..877435))
location: region:817270-877435:-1
so has part: feature:877065-877435:-1:exon
so has part: feature:853899-854089:-1:exon
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urn:…
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urn:…
SIO_000300: 22
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urn:…
SIO_000300: 23
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urn:…
SIO_000300: 24
SIO_000628: feature:817270-819578:-1:exon

HDAC7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: HDAC7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone deacetylase 7 isoform X2
translation: MQGQSQAAVTPCTSPRVPQAVPMDLRIGQRVVKPQDTALLALKQQQLQHQLFLASLHQQQVEQLAHQHVRVAMESPQREAEPGQQEQELRQILNKDKSKRSAVASTVVKQKLAEVILKKQQAAMERTCSEPSRALPYRSLEPLEAEGPSPAVLGSFLSPVPGGDPPEHFPLRKTASEPNLKVRCKPRKCLERRKNPLTRKESAPPSLKRRPPDIDSSPSSSSTPVSGCSSPNDSLAPELGPLPAPAGHEGDAERRAVPSLAHRVPVLNGPVLPGPHSPVFIPAGLEQREPGSALPPLQPLIILEPSGTHAPLVAVPGLGTVPLSFAPSLVPAERVALPGHHKPLGRTRSEPLPPSPRAVQQHLLFQQHHAHVMDRLKQQTHLGKRLAKPSEKPRLRQIPSSEDMEAEGTLPEVAAEGGDSGGTRGEPPRAGSSGRDPERPHKEELVLQQALLWDSFQRVQQQLLKRHPLGDPSALPAGHRPLSRAQSSPATATVSLPAPEPKALALPVQEQPKPHFTTGLVYDSVMLKHQCSCGDNSNHPEHAGRIQSIWSRLQERGLRSRCECLRGRKATLEELQSAHSERHVLLYGTNPLNRLKLDNGKLAGILSQRTLVMLPCGGVGVDSDTIWNELHSSNAARWAAGSVTELAFKVATRELKNGFAVVRPPGHHADPSTAMGFCFFNSVAIAARQLQQKGKLGKILIVDWDVHHGNGTQQIFYRDPAVLYISLHRHDHGNFFPGSGAADEVGAGPGEGFNVNVAWAGGLDPPMGDPEYLAAFRTVVMPIAHEFSPELVLVSAGFDAAEGHPPPLGGYKVSAKCFGYMTKQLMSLAGGAVVLALEGGHDLTAICDASEACVAALLGHEPEPLPEDSVRLKPNANAVRSLEAVIQVQSKYWVAVQRFASKLGCSFLEAQHREADEVETVTALASLSVAVMVDKRAQEEADGAGGSPEPVTGSRCPSVPAPPPRPPSPPPQFWDPRDPPEHREGRTLGWTPRDPPETPQDPPPNFPGSPRPAGAAGPGRSRRDGAGRGFGTGGDLERSKENSERPEQNSEHPERNSGHPEENSKRPEGNLERSKEKSECSRGIQSVLRGIQSVPRGIWSFPSGIWSVLRGIQSILKKIRSVPRKIQSVPRGILSILSEENSVS
SIO_010081: HDAC7
subclass of: SO_0000673
so part of: HDAC7
location: complement(join(818951..819578,821202..821340,822519..822603,823446..823579,825709..825827,826712..826809,827866..827985,829799..829886,829995..830050,830796..830903,832719..832768,833452..833572,835171..835304,836537..836744,839202..839396,840598..840806,842069..842264,844559..844662,846005..846124,846775..846884,848026..848137,849346..849436,853899..854089,912280..912298))
location: region:818951-912298:-1
so has part: feature:912280-912298:-1:exon
so has part: feature:853899-854089:-1:exon
so has part: feature:849346-849436:-1:exon
so has part: feature:848026-848137:-1:exon
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so has part: feature:835171-835304:-1:exon
so has part: feature:833452-833572:-1:exon
so has part: feature:832719-832768:-1:exon
so has part: feature:830796-830903:-1:exon
so has part: feature:829995-830050:-1:exon
so has part: feature:829799-829886:-1:exon
so has part: feature:827866-827985:-1:exon
so has part: feature:826712-826809:-1:exon
so has part: feature:825709-825827:-1:exon
so has part: feature:823446-823579:-1:exon
so has part: feature:822519-822603:-1:exon
so has part: feature:821202-821340:-1:exon
so has part: feature:818951-819578:-1:exon

XP_032939273.1
type: Protein
SIO_000068: ncbiprotein

position:818951:-1
position: 818951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:912298:-1
position: 912298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:912280-912298:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:853899-854089:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:849346-849436:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:848026-848137:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:846775-846884:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:846005-846124:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:844559-844662:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:842069-842264:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:840598-840806:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:839202-839396:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:836537-836744:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:835171-835304:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:833452-833572:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:832719-832768:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:830796-830903:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:829995-830050:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:829799-829886:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:827866-827985:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:826712-826809:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:825709-825827:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:823446-823579:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:822519-822603:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:821202-821340:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:818951-819578:-1:exon

HDAC7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: HDAC7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone deacetylase 7 isoform X3
translation: MSGDSKAAVTPCTSPRVPQAVPMDLRIGQRVVKPQDTALLALKQQQLQHQLFLASLHQQQVEQLAHQHVRVAMESPQREAEPGQQEQELRQILNKDKSKRSAVASTVVKQKLAEVILKKQQAAMERTCSEPSRALPYRSLEPLEAEGPSPAVLGSFLSPVPGGDPPEHFPLRKTASEPNLKVRCKPRKCLERRKNPLTRKESAPPSLKRRPPDIDSSPSSSSTPVSGCSSPNDSLAPELGPLPAPAGHEGDAERRAVPSLAHRVPVLNGPVLPGPHSPVFIPAGLEQREPGSALPPLQPLIILEPSGTHAPLVAVPGLGTVPLSFAPSLVPAERVALPGHHKPLGRTRSEPLPPSPRAVQQHLLFQQHHAHVMDRLKQQTHLGKRLAKPSEKPRLRQIPSSEDMEAEGTLPEVAAEGGDSGGTRGEPPRAGSSGRDPERPHKEELVLQQALLWDSFQRVQQQLLKRHPLGDPSALPAGHRPLSRAQSSPATATVSLPAPEPKALALPVQEQPKPHFTTGLVYDSVMLKHQCSCGDNSNHPEHAGRIQSIWSRLQERGLRSRCECLRGRKATLEELQSAHSERHVLLYGTNPLNRLKLDNGKLAGILSQRTLVMLPCGGVGVDSDTIWNELHSSNAARWAAGSVTELAFKVATRELKNGFAVVRPPGHHADPSTAMGFCFFNSVAIAARQLQQKGKLGKILIVDWDVHHGNGTQQIFYRDPAVLYISLHRHDHGNFFPGSGAADEVGAGPGEGFNVNVAWAGGLDPPMGDPEYLAAFRTVVMPIAHEFSPELVLVSAGFDAAEGHPPPLGGYKVSAKCFGYMTKQLMSLAGGAVVLALEGGHDLTAICDASEACVAALLGHEPEPLPEDSVRLKPNANAVRSLEAVIQVQSKYWVAVQRFASKLGCSFLEAQHREADEVETVTALASLSVAVMVDKRAQEEADGAGGSPEPVTGSRCPSVPAPPPRPPSPPPQFWDPRDPPEHREGRTLGWTPRDPPETPQDPPPNFPGSPRPAGAAGPGRSRRDGAGRGFGTGGDLERSKENSERPEQNSEHPERNSGHPEENSKRPEGNLERSKEKSECSRGIQSVLRGIQSVPRGIWSFPSGIWSVLRGIQSILKKIRSVPRKIQSVPRGILSILSEENSVS
SIO_010081: HDAC7
subclass of: SO_0000673
so part of: HDAC7
location: complement(join(818951..819578,821202..821340,822519..822603,823446..823579,825709..825827,826712..826809,827866..827985,829799..829886,829995..830050,830796..830903,832719..832768,833452..833572,835171..835304,836537..836744,839202..839396,840598..840806,842069..842264,844559..844662,846005..846124,846775..846884,848026..848137,849346..849436,853899..854089,898438..898456))
location: region:818951-898456:-1
so has part: feature:898438-898456:-1:exon
so has part: feature:853899-854089:-1:exon
so has part: feature:849346-849436:-1:exon
so has part: feature:848026-848137:-1:exon
so has part: feature:846775-846884:-1:exon
so has part: feature:846005-846124:-1:exon
so has part: feature:844559-844662:-1:exon
so has part: feature:842069-842264:-1:exon
so has part: feature:840598-840806:-1:exon
so has part: feature:839202-839396:-1:exon
so has part: feature:836537-836744:-1:exon
so has part: feature:835171-835304:-1:exon
so has part: feature:833452-833572:-1:exon
so has part: feature:832719-832768:-1:exon
so has part: feature:830796-830903:-1:exon
so has part: feature:829995-830050:-1:exon
so has part: feature:829799-829886:-1:exon
so has part: feature:827866-827985:-1:exon
so has part: feature:826712-826809:-1:exon
so has part: feature:825709-825827:-1:exon
so has part: feature:823446-823579:-1:exon
so has part: feature:822519-822603:-1:exon
so has part: feature:821202-821340:-1:exon
so has part: feature:818951-819578:-1:exon

XP_032939274.1
type: Protein
SIO_000068: ncbiprotein

position:898456:-1
position: 898456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:898438-898456:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:853899-854089:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:849346-849436:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:848026-848137:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:846775-846884:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:846005-846124:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:844559-844662:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:842069-842264:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:840598-840806:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:839202-839396:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:836537-836744:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:835171-835304:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:833452-833572:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:832719-832768:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:830796-830903:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:829995-830050:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:829799-829886:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:827866-827985:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:826712-826809:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:825709-825827:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:823446-823579:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:822519-822603:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:821202-821340:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:818951-819578:-1:exon

HDAC7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: HDAC7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone deacetylase 7 isoform X4
translation: MWDAEPRLPGRGTLWMFSGLEVSGSLVMFSPSSAVTPCTSPRVPQAVPMDLRIGQRVVKPQDTALLALKQQQLQHQLFLASLHQQQVEQLAHQHVRVAMESPQREAEPGQQEQELRQILNKDKSKRSAVASTVVKQKLAEVILKKQQAAMERTCSEPSRALPYRSLEPLEAEGPSPAVLGSFLSPVPGGDPPEHFPLRKTDSSPSSSSTPVSGCSSPNDSLAPELGPLPAPAGHEGDAERRAVPSLAHRVPVLNGPVLPGPHSPVFIPAGLEQREPGSALPPLQPLIILEPSGTHAPLVAVPGLGTVPLSFAPSLVPAERVALPGHHKPLGRTRSEPLPPSPRAVQQHLLFQQHHAHVMDRLKQQTHLGKRLAKPSEKPRLRQIPSSEDMEAEGTLPEVAAEGGDSGGTRGEPPRAGSSGRDPERPHKEELVLQQALLWDSFQRVQQQLLKRHPLGDPSALPAGHRPLSRAQSSPATATVSLPAPEPKALALPVQEQPKPHFTTGLVYDSVMLKHQCSCGDNSNHPEHAGRIQSIWSRLQERGLRSRCECLRGRKATLEELQSAHSERHVLLYGTNPLNRLKLDNGKLAGILSQRTLVMLPCGGVGVDSDTIWNELHSSNAARWAAGSVTELAFKVATRELKNGFAVVRPPGHHADPSTAMGFCFFNSVAIAARQLQQKGKLGKILIVDWDVHHGNGTQQIFYRDPAVLYISLHRHDHGNFFPGSGAADEVGAGPGEGFNVNVAWAGGLDPPMGDPEYLAAFRTVVMPIAHEFSPELVLVSAGFDAAEGHPPPLGGYKVSAKCFGYMTKQLMSLAGGAVVLALEGGHDLTAICDASEACVAALLGHEPEPLPEDSVRLKPNANAVRSLEAVIQVQSKYWVAVQRFASKLGCSFLEAQHREADEVETVTALASLSVAVMVDKRAQEEADGAGGSPEPVTGSRCPSVPAPPPRPPSPPPQFWDPRDPPEHREGRTLGWTPRDPPETPQDPPPNFPGSPRPAGAAGPGRSRRDGAGRGFGTGGDLERSKENSERPEQNSEHPERNSGHPEENSKRPEGNLERSKEKSECSRGIQSVLRGIQSVPRGIWSFPSGIWSVLRGIQSILKKIRSVPRKIQSVPRGILSILSEENSVS
SIO_010081: HDAC7
subclass of: SO_0000673
so part of: HDAC7
location: complement(join(818951..819578,821202..821340,822519..822603,823446..823579,825709..825827,826712..826809,827866..827985,829799..829886,829995..830050,830796..830903,832719..832768,833452..833572,835171..835304,836537..836744,839202..839396,840598..840806,842069..842264,844559..844662,846775..846884,848026..848137,849346..849436,853899..854089,877065..877161))
location: region:818951-877161:-1
so has part: feature:877065-877161:-1:exon
so has part: feature:853899-854089:-1:exon
so has part: feature:849346-849436:-1:exon
so has part: feature:848026-848137:-1:exon
so has part: feature:846775-846884:-1:exon
so has part: feature:844559-844662:-1:exon
so has part: feature:842069-842264:-1:exon
so has part: feature:840598-840806:-1:exon
so has part: feature:839202-839396:-1:exon
so has part: feature:836537-836744:-1:exon
so has part: feature:835171-835304:-1:exon
so has part: feature:833452-833572:-1:exon
so has part: feature:832719-832768:-1:exon
so has part: feature:830796-830903:-1:exon
so has part: feature:829995-830050:-1:exon
so has part: feature:829799-829886:-1:exon
so has part: feature:827866-827985:-1:exon
so has part: feature:826712-826809:-1:exon
so has part: feature:825709-825827:-1:exon
so has part: feature:823446-823579:-1:exon
so has part: feature:822519-822603:-1:exon
so has part: feature:821202-821340:-1:exon
so has part: feature:818951-819578:-1:exon

XP_032939275.1
type: Protein
SIO_000068: ncbiprotein

position:877161:-1
position: 877161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:877065-877161:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:853899-854089:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:849346-849436:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:848026-848137:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:846775-846884:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:844559-844662:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:842069-842264:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:840598-840806:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:839202-839396:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:836537-836744:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:835171-835304:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:833452-833572:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:832719-832768:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:830796-830903:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:829995-830050:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:829799-829886:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:827866-827985:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:826712-826809:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:825709-825827:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:823446-823579:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:822519-822603:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:821202-821340:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:818951-819578:-1:exon

HDAC7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: HDAC7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone deacetylase 7 isoform X1
translation: MWDAEPRLPGRGTLWMFSGLEVSGSLVMFSPSSAVTPCTSPRVPQAVPMDLRIGQRVVKPQDTALLALKQQQLQHQLFLASLHQQQVEQLAHQHVRVAMESPQREAEPGQQEQELRQILNKDKSKRSAVASTVVKQKLAEVILKKQQAAMERTCSEPSRALPYRSLEPLEAEGPSPAVLGSFLSPVPGGDPPEHFPLRKTASEPNLKVRCKPRKCLERRKNPLTRKESAPPSLKRRPPDIDSSPSSSSTPVSGCSSPNDSLAPELGPLPAPAGHEGDAERRAVPSLAHRVPVLNGPVLPGPHSPVFIPAGLEQREPGSALPPLQPLIILEPSGTHAPLVAVPGLGTVPLSFAPSLVPAERVALPGHHKPLGRTRSEPLPPSPRAVQQHLLFQQHHAHVMDRLKQQTHLGKRLAKPSEKPRLRQIPSSEDMEAEGTLPEVAAEGGDSGGTRGEPPRAGSSGRDPERPHKEELVLQQALLWDSFQRVQQQLLKRHPLGDPSALPAGHRPLSRAQSSPATATVSLPAPEPKALALPVQEQPKPHFTTGLVYDSVMLKHQCSCGDNSNHPEHAGRIQSIWSRLQERGLRSRCECLRGRKATLEELQSAHSERHVLLYGTNPLNRLKLDNGKLAGILSQRTLVMLPCGGVGVDSDTIWNELHSSNAARWAAGSVTELAFKVATRELKNGFAVVRPPGHHADPSTAMGFCFFNSVAIAARQLQQKGKLGKILIVDWDVHHGNGTQQIFYRDPAVLYISLHRHDHGNFFPGSGAADEVGAGPGEGFNVNVAWAGGLDPPMGDPEYLAAFRTVVMPIAHEFSPELVLVSAGFDAAEGHPPPLGGYKVSAKCFGYMTKQLMSLAGGAVVLALEGGHDLTAICDASEACVAALLGHEPEPLPEDSVRLKPNANAVRSLEAVIQVQSKYWVAVQRFASKLGCSFLEAQHREADEVETVTALASLSVAVMVDKRAQEEADGAGGSPEPVTGSRCPSVPAPPPRPPSPPPQFWDPRDPPEHREGRTLGWTPRDPPETPQDPPPNFPGSPRPAGAAGPGRSRRDGAGRGFGTGGDLERSKENSERPEQNSEHPERNSGHPEENSKRPEGNLERSKEKSECSRGIQSVLRGIQSVPRGIWSFPSGIWSVLRGIQSILKKIRSVPRKIQSVPRGILSILSEENSVS
SIO_010081: HDAC7
subclass of: SO_0000673
so part of: HDAC7
location: complement(join(818951..819578,821202..821340,822519..822603,823446..823579,825709..825827,826712..826809,827866..827985,829799..829886,829995..830050,830796..830903,832719..832768,833452..833572,835171..835304,836537..836744,839202..839396,840598..840806,842069..842264,844559..844662,846005..846124,846775..846884,848026..848137,849346..849436,853899..854089,877065..877161))
location: region:818951-877161:-1
so has part: feature:877065-877161:-1:exon
so has part: feature:853899-854089:-1:exon
so has part: feature:849346-849436:-1:exon
so has part: feature:848026-848137:-1:exon
so has part: feature:846775-846884:-1:exon
so has part: feature:846005-846124:-1:exon
so has part: feature:844559-844662:-1:exon
so has part: feature:842069-842264:-1:exon
so has part: feature:840598-840806:-1:exon
so has part: feature:839202-839396:-1:exon
so has part: feature:836537-836744:-1:exon
so has part: feature:835171-835304:-1:exon
so has part: feature:833452-833572:-1:exon
so has part: feature:832719-832768:-1:exon
so has part: feature:830796-830903:-1:exon
so has part: feature:829995-830050:-1:exon
so has part: feature:829799-829886:-1:exon
so has part: feature:827866-827985:-1:exon
so has part: feature:826712-826809:-1:exon
so has part: feature:825709-825827:-1:exon
so has part: feature:823446-823579:-1:exon
so has part: feature:822519-822603:-1:exon
so has part: feature:821202-821340:-1:exon
so has part: feature:818951-819578:-1:exon

XP_032939272.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:877065-877161:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:853899-854089:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:849346-849436:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:848026-848137:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:846775-846884:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:846005-846124:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:844559-844662:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:842069-842264:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:840598-840806:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:839202-839396:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:836537-836744:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:835171-835304:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:833452-833572:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:832719-832768:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:830796-830903:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:829995-830050:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:829799-829886:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:827866-827985:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:826712-826809:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:825709-825827:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:823446-823579:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:822519-822603:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:821202-821340:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:818951-819578:-1:exon

HDAC7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: HDAC7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone deacetylase 7 isoform X5
translation: MDLRIGQRVVKPQDTALLALKQQQLQHQLFLASLHQQQVEQLAHQHVRVAMESPQREAEPGQQEQELRQILNKDKSKRSAVASTVVKQKLAEVILKKQQAAMERTCSEPSRALPYRSLEPLEAEGPSPAVLGSFLSPVPGGDPPEHFPLRKTASEPNLKVRCKPRKCLERRKNPLTRKESAPPSLKRRPPDIDSSPSSSSTPVSGCSSPNDSLAPELGPLPAPAGHEGDAERRAVPSLAHRVPVLNGPVLPGPHSPVFIPAGLEQREPGSALPPLQPLIILEPSGTHAPLVAVPGLGTVPLSFAPSLVPAERVALPGHHKPLGRTRSEPLPPSPRAVQQHLLFQQHHAHVMDRLKQQTHLGKRLAKPSEKPRLRQIPSSEDMEAEGTLPEVAAEGGDSGGTRGEPPRAGSSGRDPERPHKEELVLQQALLWDSFQRVQQQLLKRHPLGDPSALPAGHRPLSRAQSSPATATVSLPAPEPKALALPVQEQPKPHFTTGLVYDSVMLKHQCSCGDNSNHPEHAGRIQSIWSRLQERGLRSRCECLRGRKATLEELQSAHSERHVLLYGTNPLNRLKLDNGKLAGILSQRTLVMLPCGGVGVDSDTIWNELHSSNAARWAAGSVTELAFKVATRELKNGFAVVRPPGHHADPSTAMGFCFFNSVAIAARQLQQKGKLGKILIVDWDVHHGNGTQQIFYRDPAVLYISLHRHDHGNFFPGSGAADEVGAGPGEGFNVNVAWAGGLDPPMGDPEYLAAFRTVVMPIAHEFSPELVLVSAGFDAAEGHPPPLGGYKVSAKCFGYMTKQLMSLAGGAVVLALEGGHDLTAICDASEACVAALLGHEPEPLPEDSVRLKPNANAVRSLEAVIQVQSKYWVAVQRFASKLGCSFLEAQHREADEVETVTALASLSVAVMVDKRAQEEADGAGGSPEPVTGSRCPSVPAPPPRPPSPPPQFWDPRDPPEHREGRTLGWTPRDPPETPQDPPPNFPGSPRPAGAAGPGRSRRDGAGRGFGTGGDLERSKENSERPEQNSEHPERNSGHPEENSKRPEGNLERSKEKSECSRGIQSVLRGIQSVPRGIWSFPSGIWSVLRGIQSILKKIRSVPRKIQSVPRGILSILSEENSVS
SIO_010081: HDAC7
subclass of: SO_0000673
so part of: HDAC7
location: complement(join(818951..819578,821202..821340,822519..822603,823446..823579,825709..825827,826712..826809,827866..827985,829799..829886,829995..830050,830796..830903,832719..832768,833452..833572,835171..835304,836537..836744,839202..839396,840598..840806,842069..842264,844559..844662,846005..846124,846775..846884,848026..848137,849346..849436,853899..854042))
location: region:818951-854042:-1
so has part: feature:853899-854042:-1:exon
so has part: feature:849346-849436:-1:exon
so has part: feature:848026-848137:-1:exon
so has part: feature:846775-846884:-1:exon
so has part: feature:846005-846124:-1:exon
so has part: feature:844559-844662:-1:exon
so has part: feature:842069-842264:-1:exon
so has part: feature:840598-840806:-1:exon
so has part: feature:839202-839396:-1:exon
so has part: feature:836537-836744:-1:exon
so has part: feature:835171-835304:-1:exon
so has part: feature:833452-833572:-1:exon
so has part: feature:832719-832768:-1:exon
so has part: feature:830796-830903:-1:exon
so has part: feature:829995-830050:-1:exon
so has part: feature:829799-829886:-1:exon
so has part: feature:827866-827985:-1:exon
so has part: feature:826712-826809:-1:exon
so has part: feature:825709-825827:-1:exon
so has part: feature:823446-823579:-1:exon
so has part: feature:822519-822603:-1:exon
so has part: feature:821202-821340:-1:exon
so has part: feature:818951-819578:-1:exon

XP_032939276.1
type: Protein
SIO_000068: ncbiprotein

position:854042:-1
position: 854042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:853899-854042:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:849346-849436:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:848026-848137:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:846775-846884:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:846005-846124:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:844559-844662:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:842069-842264:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:840598-840806:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:839202-839396:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:836537-836744:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:835171-835304:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:833452-833572:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:832719-832768:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:830796-830903:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:829995-830050:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:829799-829886:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:827866-827985:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:826712-826809:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:825709-825827:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:823446-823579:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:822519-822603:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:821202-821340:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:818951-819578:-1:exon

LOC122149469
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: LOC122149469
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 912993..920202
location: region:912993-920202:1
so has part: feature:912993-920202:1:exon

122149469
type: Gene
SIO_000068: ncbigene

position:912993:1
position: 912993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:920202:1
position: 920202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:912993-920202:1:exon

LOC122149469
type: Exon
subclass of: SO_0000147
RO_0002162: 91951
gene: LOC122149469
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC122149469
subclass of: SO_0000673
so part of: LOC122149469
location: 912993..913046
location: region:912993-913046:1
so has part: feature:912993-913046:1:exon

position:913046:1
position: 913046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:912993-913046:1:exon

LOC122149469
type: Exon
subclass of: SO_0000147
RO_0002162: 91951
gene: LOC122149469
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC122149469
subclass of: SO_0000673
so part of: LOC122149469
location: 917860..917953
location: region:917860-917953:1
so has part: feature:917860-917953:1:exon

position:917860:1
position: 917860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:917953:1
position: 917953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:917860-917953:1:exon

LOC122149469
type: Exon
subclass of: SO_0000147
RO_0002162: 91951
gene: LOC122149469
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC122149469
subclass of: SO_0000673
so part of: LOC122149469
location: 918093..918357
location: region:918093-918357:1
so has part: feature:918093-918357:1:exon

position:918093:1
position: 918093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:918357:1
position: 918357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:918093-918357:1:exon

LOC122149469
type: Exon
subclass of: SO_0000147
RO_0002162: 91951
gene: LOC122149469
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC122149469
subclass of: SO_0000673
so part of: LOC122149469
location: 919977..920202
location: region:919977-920202:1
so has part: feature:919977-920202:1:exon

position:919977:1
position: 919977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:919977-920202:1:exon

LOC117008952
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: LOC117008952
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 932121..938651
location: region:932121-938651:1
so has part: feature:932121-938651:1:exon

117008952
type: Gene
SIO_000068: ncbigene

position:932121:1
position: 932121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:938651:1
position: 938651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:932121-938651:1:exon

LOC117008952
type: Exon
subclass of: SO_0000147
RO_0002162: 91951
gene: LOC117008952
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC117008952
subclass of: SO_0000673
so part of: LOC117008952
location: 932121..932126
location: region:932121-932126:1
so has part: feature:932121-932126:1:exon

position:932126:1
position: 932126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:932121-932126:1:exon

LOC117008952
type: Exon
subclass of: SO_0000147
RO_0002162: 91951
gene: LOC117008952
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC117008952
subclass of: SO_0000673
so part of: LOC117008952
location: 937817..938277
location: region:937817-938277:1
so has part: feature:937817-938277:1:exon

position:937817:1
position: 937817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:938277:1
position: 938277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:937817-938277:1:exon

LOC117008952
type: Exon
subclass of: SO_0000147
RO_0002162: 91951
gene: LOC117008952
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC117008952
subclass of: SO_0000673
so part of: LOC117008952
location: 938327..938651
location: region:938327-938651:1
so has part: feature:938327-938651:1:exon

position:938327:1
position: 938327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:938327-938651:1:exon

RACGAP1
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: RACGAP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(938682..949804)
location: region:938682-949804:-1
so has part: feature:938682-949804:-1:exon
subclass of: SO_0000010

117009151
type: Gene
SIO_000068: ncbigene

position:938682:-1
position: 938682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:949804:-1
position: 949804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:938682-949804:-1:exon

RACGAP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: RACGAP1
product: Rac GTPase activating protein 1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083386.1
SIO_010081: RACGAP1
subclass of: SO_0000673
so part of: RACGAP1
location: complement(join(938682..939462,940589..940697,941658..941793,941876..942008,942245..942350,942662..942860,943041..943136,943438..943602,944826..944956,945637..945754,946303..946380,947054..947107,947306..947375,947571..947704,948046..948248,948702..948790,949727..949804))
location: region:938682-949804:-1
so has part: feature:949727-949804:-1:exon
so has part: feature:948702-948790:-1:exon
so has part: feature:948046-948248:-1:exon
so has part: feature:947571-947704:-1:exon
so has part: feature:947306-947375:-1:exon
so has part: feature:947054-947107:-1:exon
so has part: feature:946303-946380:-1:exon
so has part: feature:945637-945754:-1:exon
so has part: feature:944826-944956:-1:exon
so has part: feature:943438-943602:-1:exon
so has part: feature:943041-943136:-1:exon
so has part: feature:942662-942860:-1:exon
so has part: feature:942245-942350:-1:exon
so has part: feature:941876-942008:-1:exon
so has part: feature:941658-941793:-1:exon
so has part: feature:940589-940697:-1:exon
so has part: feature:938682-939462:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:949727-949804:-1:exon

position:949727:-1
position: 949727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:948702-948790:-1:exon

position:948702:-1
position: 948702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:948790:-1
position: 948790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:948046-948248:-1:exon

position:948046:-1
position: 948046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:948248:-1
position: 948248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:947571-947704:-1:exon

position:947571:-1
position: 947571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:947704:-1
position: 947704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:947306-947375:-1:exon

position:947306:-1
position: 947306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:947375:-1
position: 947375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:947054-947107:-1:exon

position:947054:-1
position: 947054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:947107:-1
position: 947107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:946303-946380:-1:exon

position:946303:-1
position: 946303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:946380:-1
position: 946380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:945637-945754:-1:exon

position:945637:-1
position: 945637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:945754:-1
position: 945754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:944826-944956:-1:exon

position:944826:-1
position: 944826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:944956:-1
position: 944956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:943438-943602:-1:exon

position:943438:-1
position: 943438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:943602:-1
position: 943602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:943041-943136:-1:exon

position:943041:-1
position: 943041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:943136:-1
position: 943136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:942662-942860:-1:exon

position:942662:-1
position: 942662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:942860:-1
position: 942860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:942245-942350:-1:exon

position:942245:-1
position: 942245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:942350:-1
position: 942350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:941876-942008:-1:exon

position:941876:-1
position: 941876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:942008:-1
position: 942008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:941658-941793:-1:exon

position:941658:-1
position: 941658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:941793:-1
position: 941793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:940589-940697:-1:exon

position:940589:-1
position: 940589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:940697:-1
position: 940697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:938682-939462:-1:exon

position:939462:-1
position: 939462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RACGAP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: RACGAP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: rac GTPase-activating protein 1
translation: MESAMGNLRALFEQLARQAELLSEGNECQFIQLAKSFEENRRKWQKSEHELGRYKDLLMKTEAERSALDVKLKHARNQVDVEIKRRQKAEMDCEKLERQIQLIRELLMCDSSGSIQLSEEQKSVLAFLNRPQAVGNSGNKRLSTIDESGSILSDISFDKTDDSLDWDSSLVKTVRLKRREKRRSSGQFAEGPPAPQKKSRSISSTADQANESIVAKTTVMVPNDGGPIEAISTIQTVPYPRRSRRKSGPLQPWNSESSLGSKQLESKVDTDGSSTPQHNGGVRLHDFVSKTVIKPESCVPCGKRVKFGKISLKCRDCRVVAHPECRERCPLPCIPTLTGTPVRIGEGTLMDFVPSTPPMIPSIIVHCVNEIEQRGLHETGIYRISGCDKTVRELKEKFLRGKNVPLLSKVDDIHAICGLLKDFLRSLKEPLLTFRLNKTFMEAAEISDEDNSIAAMYQAVGELPQANRDTLAFLMVHLQRVAQSPDTKMDISNLAKVFGPTIVAHAVPDPDPMTLLQDTKRQPKVVERLLLLPMDYWSQLMMVEQENIDPAHVIENTNAYSTPQTPEIQVSILGPLTTPEHQLSKTPSSSSLSQRVRSTFSRTTPRFGSKSKSTTQLGHQGNFFASPLLK
SIO_010081: RACGAP1
subclass of: SO_0000673
so part of: RACGAP1
location: complement(join(939387..939462,940589..940697,941658..941793,941876..942008,942245..942350,942662..942860,943041..943136,943438..943602,944826..944956,945637..945754,946303..946380,947054..947107,947306..947375,947571..947704,948046..948248,948702..948786))
location: region:939387-948786:-1
so has part: feature:948702-948786:-1:exon
so has part: feature:948046-948248:-1:exon
so has part: feature:947571-947704:-1:exon
so has part: feature:947306-947375:-1:exon
so has part: feature:947054-947107:-1:exon
so has part: feature:946303-946380:-1:exon
so has part: feature:945637-945754:-1:exon
so has part: feature:944826-944956:-1:exon
so has part: feature:943438-943602:-1:exon
so has part: feature:943041-943136:-1:exon
so has part: feature:942662-942860:-1:exon
so has part: feature:942245-942350:-1:exon
so has part: feature:941876-942008:-1:exon
so has part: feature:941658-941793:-1:exon
so has part: feature:940589-940697:-1:exon
so has part: feature:939387-939462:-1:exon

XP_032939277.1
type: Protein
SIO_000068: ncbiprotein

position:939387:-1
position: 939387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:948786:-1
position: 948786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:948702-948786:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:948046-948248:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:947571-947704:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:947306-947375:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:947054-947107:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:946303-946380:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:945637-945754:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:944826-944956:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:943438-943602:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:943041-943136:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:942662-942860:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:942245-942350:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:941876-942008:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:941658-941793:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:940589-940697:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:939387-939462:-1:exon

ASIC1
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: ASIC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 963487..985001
location: region:963487-985001:1
so has part: feature:963487-985001:1:exon
subclass of: SO_0000010

117009152
type: Gene
SIO_000068: ncbigene

position:963487:1
position: 963487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:985001:1
position: 985001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:963487-985001:1:exon

ASIC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: ASIC1
product: acid sensing ion channel subunit 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_033083389.2
SIO_010081: ASIC1
subclass of: SO_0000673
so part of: ASIC1
location: join(963487..963817,964134..964531,966518..966713,981451..981601,981962..982089,982236..982386,982858..982914,983002..983155,983234..983325,983554..983633,983726..983830,984891..985001)
location: region:963487-985001:1
so has part: feature:963487-963817:1:exon
so has part: feature:964134-964531:1:exon
so has part: feature:966518-966713:1:exon
so has part: feature:981451-981601:1:exon
so has part: feature:981962-982089:1:exon
so has part: feature:982236-982386:1:exon
so has part: feature:982858-982914:1:exon
so has part: feature:983002-983155:1:exon
so has part: feature:983234-983325:1:exon
so has part: feature:983554-983633:1:exon
so has part: feature:983726-983830:1:exon
so has part: feature:984891-985001:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:963487-963817:1:exon

position:963817:1
position: 963817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:964134-964531:1:exon

position:964134:1
position: 964134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:964531:1
position: 964531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:966518-966713:1:exon

position:966518:1
position: 966518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:966713:1
position: 966713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:981451-981601:1:exon

position:981451:1
position: 981451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:981601:1
position: 981601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:981962-982089:1:exon

position:981962:1
position: 981962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:982089:1
position: 982089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:982236-982386:1:exon

position:982236:1
position: 982236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:982386:1
position: 982386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:982858-982914:1:exon

position:982858:1
position: 982858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:982914:1
position: 982914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:983002-983155:1:exon

position:983002:1
position: 983002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:983155:1
position: 983155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:983234-983325:1:exon

position:983234:1
position: 983234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:983325:1
position: 983325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:983554-983633:1:exon

position:983554:1
position: 983554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:983633:1
position: 983633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:983726-983830:1:exon

position:983726:1
position: 983726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:983830:1
position: 983830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:984891-985001:1:exon

position:984891:1
position: 984891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ASIC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: ASIC1
product: acid sensing ion channel subunit 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_033083388.2
SIO_010081: ASIC1
subclass of: SO_0000673
so part of: ASIC1
location: join(963488..963817,964137..964531,966518..966713,981451..981601,981962..982089,982236..982386,982858..982914,983002..983155,983234..983325,983554..983633,983726..983830,984891..985001)
location: region:963488-985001:1
so has part: feature:963488-963817:1:exon
so has part: feature:964137-964531:1:exon
so has part: feature:966518-966713:1:exon
so has part: feature:981451-981601:1:exon
so has part: feature:981962-982089:1:exon
so has part: feature:982236-982386:1:exon
so has part: feature:982858-982914:1:exon
so has part: feature:983002-983155:1:exon
so has part: feature:983234-983325:1:exon
so has part: feature:983554-983633:1:exon
so has part: feature:983726-983830:1:exon
so has part: feature:984891-985001:1:exon

position:963488:1
position: 963488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:963488-963817:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:964137-964531:1:exon

position:964137:1
position: 964137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:966518-966713:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:981451-981601:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:981962-982089:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:982236-982386:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:982858-982914:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:983002-983155:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:983234-983325:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:983554-983633:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:983726-983830:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:984891-985001:1:exon

ASIC1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: ASIC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: acid-sensing ion channel 1
translation: MMDLKVDEEEVDSGQPVSIQAFASSSTLHGLSHIFSYERLSLKRVVWALCFLGSLALLALVCTNRIQYYFLYPHVTKLDEVAATRLTFPAVTFCNLNEFRFSRVTKNDLYHAGELLALLNNRYEIPDIQTADEKQLEILQDKANFRNFKPKPFNMLEFYDRAGHDIREMLLSCFFRGEQCTPEDFKVVFTRYGKCYTFNAGQDGKPRLITMKGGTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQIHSQDEPPLIDQLGFGVAPGFQTFVSCQEQRLIYLPPPWGDCKAVAGDSEFYDTYSITACRIDCETRYLVENCNCRMVHMPGDAPYCTPEQYKECADPALDFLVEKDNEYCICEMPCNMTRYGKELSMVKIPSKASAKYLAKKYNKSEQYIGENILVLDIFFEALNYETIEQKKAYEVAGLLGDIGGQMGLFIGASILTVLELFDYAYEVIKHRLCRRGKCRKNHKRNNTDKGVALSMDDVKRHNPCESIRGHPAGMTYAANILPHHPARGTFEDFTC
SIO_010081: ASIC1
subclass of: SO_0000673
so part of: ASIC1
location: join(964167..964531,966518..966713,981451..981601,981962..982089,982236..982386,982858..982914,983002..983155,983234..983325,983554..983633,983726..983830,984891..984995)
location: region:964167-984995:1
so has part: feature:964167-964531:1:exon
so has part: feature:966518-966713:1:exon
so has part: feature:981451-981601:1:exon
so has part: feature:981962-982089:1:exon
so has part: feature:982236-982386:1:exon
so has part: feature:982858-982914:1:exon
so has part: feature:983002-983155:1:exon
so has part: feature:983234-983325:1:exon
so has part: feature:983554-983633:1:exon
so has part: feature:983726-983830:1:exon
so has part: feature:984891-984995:1:exon

XP_032939279.1
type: Protein
SIO_000068: ncbiprotein

position:964167:1
position: 964167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:984995:1
position: 984995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:964167-964531:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:966518-966713:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:981451-981601:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:981962-982089:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:982236-982386:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:982858-982914:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:983002-983155:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:983234-983325:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:983554-983633:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:983726-983830:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:984891-984995:1:exon

ASIC1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: ASIC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: acid-sensing ion channel 1
translation: MMDLKVDEEEVDSGQPVSIQAFASSSTLHGLSHIFSYERLSLKRVVWALCFLGSLALLALVCTNRIQYYFLYPHVTKLDEVAATRLTFPAVTFCNLNEFRFSRVTKNDLYHAGELLALLNNRYEIPDIQTADEKQLEILQDKANFRNFKPKPFNMLEFYDRAGHDIREMLLSCFFRGEQCTPEDFKVVFTRYGKCYTFNAGQDGKPRLITMKGGTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQIHSQDEPPLIDQLGFGVAPGFQTFVSCQEQRLIYLPPPWGDCKAVAGDSEFYDTYSITACRIDCETRYLVENCNCRMVHMPGDAPYCTPEQYKECADPALDFLVEKDNEYCICEMPCNMTRYGKELSMVKIPSKASAKYLAKKYNKSEQYIGENILVLDIFFEALNYETIEQKKAYEVAGLLGDIGGQMGLFIGASILTVLELFDYAYEVIKHRLCRRGKCRKNHKRNNTDKGVALSMDDVKRHNPCESIRGHPAGMTYAANILPHHPARGTFEDFTC
SIO_010081: ASIC1
subclass of: SO_0000673
so part of: ASIC1
location: join(964167..964531,966518..966713,981451..981601,981962..982089,982236..982386,982858..982914,983002..983155,983234..983325,983554..983633,983726..983830,984891..984995)
location: region:964167-984995:1
so has part: feature:964167-964531:1:exon
so has part: feature:966518-966713:1:exon
so has part: feature:981451-981601:1:exon
so has part: feature:981962-982089:1:exon
so has part: feature:982236-982386:1:exon
so has part: feature:982858-982914:1:exon
so has part: feature:983002-983155:1:exon
so has part: feature:983234-983325:1:exon
so has part: feature:983554-983633:1:exon
so has part: feature:983726-983830:1:exon
so has part: feature:984891-984995:1:exon

XP_032939280.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:964167-964531:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:966518-966713:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:981451-981601:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:981962-982089:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:982236-982386:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:982858-982914:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:983002-983155:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:983234-983325:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:983554-983633:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:983726-983830:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:984891-984995:1:exon

LOC117009156
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: LOC117009156
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 979142..981069
location: region:979142-981069:1
so has part: feature:979142-981069:1:exon
subclass of: SO_0000010

117009156
type: Gene
SIO_000068: ncbigene

position:979142:1
position: 979142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:981069:1
position: 981069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:979142-981069:1:exon

LOC117009156
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: LOC117009156
product: acid-sensing ion channel 4-A-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_033083394.1
SIO_010081: LOC117009156
subclass of: SO_0000673
so part of: LOC117009156
location: 979142..981069
location: region:979142-981069:1
so has part: feature:979142-981069:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:979142-981069:1:exon

LOC117009156
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: LOC117009156
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: acid-sensing ion channel 4-A-like
translation: MPLQIFCTISFSREEGPEDAAAAAEGEDGAEEFLYGQEEDEEDEEDTGATTDLVAFASSCTLHGLSHIFVEGTLGARQALWAAAFLLSLSIFLYQVADRVTYYLEYQHITLLSEQGSPEIAFPAVTFCNINRVRLSQLSRHDLLYLAPLVDYEPGMELGFTPARSDPWEEEPLDLFGFFNRTCHQLEDMLLSCSYRGQRCGPADFAPVSSTKVVQATRSSSGAHQALQVMLIFP
SIO_010081: LOC117009156
subclass of: SO_0000673
so part of: LOC117009156
location: 979443..980147
location: region:979443-980147:1
so has part: feature:979443-980147:1:exon

XP_032939285.1
type: Protein
SIO_000068: ncbiprotein

position:979443:1
position: 979443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:980147:1
position: 980147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:979443-980147:1:exon

LOC117009155
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: LOC117009155
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(985270..986525)
location: region:985270-986525:-1
so has part: feature:985270-986525:-1:exon
subclass of: SO_0000010

117009155
type: Gene
SIO_000068: ncbigene

position:985270:-1
position: 985270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:986525:-1
position: 986525
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:985270-986525:-1:exon

LOC117009155
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: LOC117009155
product: tetra-peptide repeat homeobox protein 1-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_033083393.2
SIO_010081: LOC117009155
subclass of: SO_0000673
so part of: LOC117009155
location: complement(join(985270..985573,985646..986075,986177..986525))
location: region:985270-986525:-1
so has part: feature:986177-986525:-1:exon
so has part: feature:985646-986075:-1:exon
so has part: feature:985270-985573:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:986177-986525:-1:exon

position:986177:-1
position: 986177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:985646-986075:-1:exon

position:985646:-1
position: 985646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:986075:-1
position: 986075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:985270-985573:-1:exon

position:985573:-1
position: 985573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC117009155
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: LOC117009155
product: tetra-peptide repeat homeobox protein 1-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_033083392.2
SIO_010081: LOC117009155
subclass of: SO_0000673
so part of: LOC117009155
location: complement(join(985270..985573,985646..986090,986162..986525))
location: region:985270-986525:-1
so has part: feature:986162-986525:-1:exon
so has part: feature:985646-986090:-1:exon
so has part: feature:985270-985573:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:986162-986525:-1:exon

position:986162:-1
position: 986162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:985646-986090:-1:exon

position:986090:-1
position: 986090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:985270-985573:-1:exon

LOC117009155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: LOC117009155
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tetra-peptide repeat homeobox protein 1-like isoform X2
translation: MAVPRGCPQWGCGQKWGLGFLLPLSPRLGTSWGWEGLQGSAGTGTAQSQSLGGVGREGQCPVSSELRWHLPAEPPLVLLILGLILGWILGLTPGLTTRLVLGWILGWIPGLILGLIPGLIPGLTPSLIPGLNPGLTPGLTPRLTPRLTPRLTPGLTTRLTPGLTPGLTTGLISGLTPGLIPVLTPSLTPGLTPGLTPSLIPGLTPRLTPGLILGLTPELTTGLTPGKTFCTAGGAVSSRQDHLGELELRPWGTEELSGHSLPSTLGTLGAPQDPPTKPRRAQQAQPRHWSRMSMETTEDRRTGLWMESAAERNRLLLLGFWV
SIO_010081: LOC117009155
subclass of: SO_0000673
so part of: LOC117009155
location: complement(join(985270..985573,985646..986075,986177..986411))
location: region:985270-986411:-1
so has part: feature:986177-986411:-1:exon
so has part: feature:985646-986075:-1:exon
so has part: feature:985270-985573:-1:exon

XP_032939284.1
type: Protein
SIO_000068: ncbiprotein

position:986411:-1
position: 986411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:986177-986411:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:985646-986075:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:985270-985573:-1:exon

LOC117009155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: LOC117009155
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tetra-peptide repeat homeobox protein 1-like isoform X1
translation: MAVPRGCPQWGCGQKWGLGFLLPLSPRLGTSWGWEGLQGSAGTGTAQSQSLGGVGREGQCPVSSELRWHLPAEPPLVLPGLVLGLILGLILGLILGWILGLTPGLTTRLVLGWILGWIPGLILGLIPGLIPGLTPSLIPGLNPGLTPGLTPRLTPRLTPRLTPGLTTRLTPGLTPGLTTGLISGLTPGLIPVLTPSLTPGLTPGLTPSLIPGLTPRLTPGLILGLTPELTTGLTPGKTFCTAGGAVSSRQDHLGELELRPWGTEELSGHSLPSTLGTLGAPQDPPTKPRRAQQAQPRHWSRMSMETTEDRRTGLWMESAAERNRLLLLGFWV
SIO_010081: LOC117009155
subclass of: SO_0000673
so part of: LOC117009155
location: complement(join(985270..985573,985646..986090,986162..986411))
location: region:985270-986411:-1
so has part: feature:986162-986411:-1:exon
so has part: feature:985646-986090:-1:exon
so has part: feature:985270-985573:-1:exon

XP_032939283.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:986162-986411:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:985646-986090:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:985270-985573:-1:exon

SMARCD1
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: SMARCD1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 991984..999697
location: region:991984-999697:1
so has part: feature:991984-999697:1:exon
subclass of: SO_0000010

117009153
type: Gene
SIO_000068: ncbigene

position:991984:1
position: 991984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:999697:1
position: 999697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:991984-999697:1:exon

SMARCD1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: SMARCD1
product: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083390.1
SIO_010081: SMARCD1
subclass of: SO_0000673
so part of: SMARCD1
location: join(991984..992148,992223..992410,993147..993189,993288..993410,993624..993746,994220..994336,994646..994747,995020..995181,995288..995385,995772..995907,996208..996330,996571..996672,998076..999697)
location: region:991984-999697:1
so has part: feature:991984-992148:1:exon
so has part: feature:992223-992410:1:exon
so has part: feature:993147-993189:1:exon
so has part: feature:993288-993410:1:exon
so has part: feature:993624-993746:1:exon
so has part: feature:994220-994336:1:exon
so has part: feature:994646-994747:1:exon
so has part: feature:995020-995181:1:exon
so has part: feature:995288-995385:1:exon
so has part: feature:995772-995907:1:exon
so has part: feature:996208-996330:1:exon
so has part: feature:996571-996672:1:exon
so has part: feature:998076-999697:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:991984-992148:1:exon

position:992148:1
position: 992148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:992223-992410:1:exon

position:992223:1
position: 992223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:992410:1
position: 992410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:993147-993189:1:exon

position:993147:1
position: 993147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:993189:1
position: 993189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:993288-993410:1:exon

position:993288:1
position: 993288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:993410:1
position: 993410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:993624-993746:1:exon

position:993624:1
position: 993624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:993746:1
position: 993746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:994220-994336:1:exon

position:994220:1
position: 994220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:994336:1
position: 994336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:994646-994747:1:exon

position:994646:1
position: 994646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:994747:1
position: 994747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:995020-995181:1:exon

position:995020:1
position: 995020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:995181:1
position: 995181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:995288-995385:1:exon

position:995288:1
position: 995288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:995385:1
position: 995385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:995772-995907:1:exon

position:995772:1
position: 995772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:995907:1
position: 995907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:996208-996330:1:exon

position:996208:1
position: 996208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:996330:1
position: 996330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:996571-996672:1:exon

position:996571:1
position: 996571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:996672:1
position: 996672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:998076-999697:1:exon

position:998076:1
position: 998076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SMARCD1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: SMARCD1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
translation: MAARAGFQSGPASGGGAGAAPGAALGPGAPGGAVRMGPAPGQGLYRSPLPGAAYPRPGMLPGGRLAPQGPAMGPPGYGGSPAVRPALAQAGLDQARKRPAPQQLQQVQPQAVPNRNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAALDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
SIO_010081: SMARCD1
subclass of: SO_0000673
so part of: SMARCD1
location: join(991984..992148,992223..992410,993147..993189,993288..993410,993624..993746,994220..994336,994646..994747,995020..995181,995288..995385,995772..995907,996208..996330,996571..996672,998076..998129)
location: region:991984-998129:1
so has part: feature:991984-992148:1:exon
so has part: feature:992223-992410:1:exon
so has part: feature:993147-993189:1:exon
so has part: feature:993288-993410:1:exon
so has part: feature:993624-993746:1:exon
so has part: feature:994220-994336:1:exon
so has part: feature:994646-994747:1:exon
so has part: feature:995020-995181:1:exon
so has part: feature:995288-995385:1:exon
so has part: feature:995772-995907:1:exon
so has part: feature:996208-996330:1:exon
so has part: feature:996571-996672:1:exon
so has part: feature:998076-998129:1:exon

XP_032939281.1
type: Protein
SIO_000068: ncbiprotein

position:998129:1
position: 998129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:991984-992148:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:992223-992410:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:993147-993189:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:993288-993410:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:993624-993746:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:994220-994336:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:994646-994747:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:995020-995181:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:995288-995385:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:995772-995907:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:996208-996330:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:996571-996672:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:998076-998129:1:exon

GPD1
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: GPD1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1001363..1006263
location: region:1001363-1006263:1
so has part: feature:1001363-1006263:1:exon
subclass of: SO_0000010

117009154
type: Gene
SIO_000068: ncbigene

position:1001363:1
position: 1001363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1006263:1
position: 1006263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1001363-1006263:1:exon

GPD1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: GPD1
product: glycerol-3-phosphate dehydrogenase 1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083391.1
SIO_010081: GPD1
subclass of: SO_0000673
so part of: GPD1
location: join(1001363..1001467,1001585..1001762,1002085..1002225,1002547..1002685,1003544..1003656,1003983..1004216,1004586..1004692,1004913..1006263)
location: region:1001363-1006263:1
so has part: feature:1001363-1001467:1:exon
so has part: feature:1001585-1001762:1:exon
so has part: feature:1002085-1002225:1:exon
so has part: feature:1002547-1002685:1:exon
so has part: feature:1003544-1003656:1:exon
so has part: feature:1003983-1004216:1:exon
so has part: feature:1004586-1004692:1:exon
so has part: feature:1004913-1006263:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1001363-1001467:1:exon

position:1001467:1
position: 1001467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1001585-1001762:1:exon

position:1001585:1
position: 1001585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1001762:1
position: 1001762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1002085-1002225:1:exon

position:1002085:1
position: 1002085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1002225:1
position: 1002225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1002547-1002685:1:exon

position:1002547:1
position: 1002547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1002685:1
position: 1002685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1003544-1003656:1:exon

position:1003544:1
position: 1003544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1003656:1
position: 1003656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1003983-1004216:1:exon

position:1003983:1
position: 1003983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1004216:1
position: 1004216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1004586-1004692:1:exon

position:1004586:1
position: 1004586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1004692:1
position: 1004692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1004913-1006263:1:exon

position:1004913:1
position: 1004913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GPD1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: GPD1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic
translation: MGGKKVCVVGSGNWGSAIAKIAGSNAARLSSFEKQVNMWVLEEEVGGRRLTDIINTEHENVKYLPGHKLPPNVVAEPDLLKACAGADVLLFVVPHQFIGKVCDQLKGHVKKEAVGMSLIKGVDEGPDGLRLISDIIHEKLGIEMNVLMGANIANEVAEEKFCETTIGCKNMKHGQMLKELMQTPNFRVSVVQEADTVEICGALKNVVAVGAGFCDGLGYGDNTKAAVIRLGLMEMIGFAKLFCKGPVTPATFLESCGVADLITTCYGGRNRKVAEAFAKTGKSIEQLEKEMLNGQKLQGPQTSAELHRILKSKNVVEKFPLFTAVYRICYEGKPVTDFITCLQSHPEHM
SIO_010081: GPD1
subclass of: SO_0000673
so part of: GPD1
location: join(1001427..1001467,1001585..1001762,1002085..1002225,1002547..1002685,1003544..1003656,1003983..1004216,1004586..1004692,1004913..1005009)
location: region:1001427-1005009:1
so has part: feature:1001427-1001467:1:exon
so has part: feature:1001585-1001762:1:exon
so has part: feature:1002085-1002225:1:exon
so has part: feature:1002547-1002685:1:exon
so has part: feature:1003544-1003656:1:exon
so has part: feature:1003983-1004216:1:exon
so has part: feature:1004586-1004692:1:exon
so has part: feature:1004913-1005009:1:exon

XP_032939282.1
type: Protein
SIO_000068: ncbiprotein

position:1001427:1
position: 1001427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1005009:1
position: 1005009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1001427-1001467:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1001585-1001762:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1002085-1002225:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1002547-1002685:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1003544-1003656:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1003983-1004216:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1004586-1004692:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1004913-1005009:1:exon

LOC117009096
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: LOC117009096
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1008405..1010347
location: region:1008405-1010347:1
so has part: feature:1008405-1010347:1:exon
subclass of: SO_0000010

117009096
type: Gene
SIO_000068: ncbigene

position:1008405:1
position: 1008405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1010347:1
position: 1010347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1008405-1010347:1:exon

LOC117009096
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: LOC117009096
product: cytochrome c oxidase assembly protein COX14, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083286.1
SIO_010081: LOC117009096
subclass of: SO_0000673
so part of: LOC117009096
location: join(1008405..1008486,1009263..1009456,1009525..1010347)
location: region:1008405-1010347:1
so has part: feature:1008405-1008486:1:exon
so has part: feature:1009263-1009456:1:exon
so has part: feature:1009525-1010347:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1008405-1008486:1:exon

position:1008486:1
position: 1008486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1009263-1009456:1:exon

position:1009263:1
position: 1009263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1009456:1
position: 1009456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1009525-1010347:1:exon

position:1009525:1
position: 1009525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117009096
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: LOC117009096
product: cytochrome c oxidase assembly protein COX14, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_033083287.1
SIO_010081: LOC117009096
subclass of: SO_0000673
so part of: LOC117009096
location: join(1008405..1008486,1009263..1009430,1009464..1009485)
location: region:1008405-1009485:1
so has part: feature:1008405-1008486:1:exon
so has part: feature:1009263-1009430:1:exon
so has part: feature:1009464-1009485:1:exon

position:1009485:1
position: 1009485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1008405-1008486:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1009263-1009430:1:exon

position:1009430:1
position: 1009430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1009464-1009485:1:exon

position:1009464:1
position: 1009464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC117009096
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: LOC117009096
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cytochrome c oxidase assembly protein COX14
translation: MVSRKQLADFGYKAFSGSMMLLTVYAGYLCSVRVQRMLQHRRERQNAAGPES
SIO_010081: LOC117009096
subclass of: SO_0000673
so part of: LOC117009096
location: 1009270..1009428
location: region:1009270-1009428:1
so has part: feature:1009270-1009428:1:exon

XP_032939177.1
type: Protein
SIO_000068: ncbiprotein

position:1009270:1
position: 1009270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1009428:1
position: 1009428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1009270-1009428:1:exon

LOC117009096
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: LOC117009096
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cytochrome c oxidase assembly protein COX14
translation: MVSRKQLADFGYKAFSGSMMLLTVYAGYLCSVRVQRMLQHRRERQNAAGPES
SIO_010081: LOC117009096
subclass of: SO_0000673
so part of: LOC117009096
location: 1009270..1009428
location: region:1009270-1009428:1
so has part: feature:1009270-1009428:1:exon

XP_032939178.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1009270-1009428:1:exon

CERS5
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: CERS5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1010552..1028712)
location: region:1010552-1028712:-1
so has part: feature:1010552-1028712:-1:exon
subclass of: SO_0000010

117009095
type: Gene
SIO_000068: ncbigene

position:1010552:-1
position: 1010552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1028712:-1
position: 1028712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1010552-1028712:-1:exon

CERS5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: CERS5
product: ceramide synthase 5, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083285.1
SIO_010081: CERS5
subclass of: SO_0000673
so part of: CERS5
location: complement(join(1010552..1011767,1014233..1014389,1016482..1016588,1017122..1017250,1018762..1018854,1019370..1019420,1019946..1020003,1022108..1022238,1023718..1023823,1028453..1028712))
location: region:1010552-1028712:-1
so has part: feature:1028453-1028712:-1:exon
so has part: feature:1023718-1023823:-1:exon
so has part: feature:1022108-1022238:-1:exon
so has part: feature:1019946-1020003:-1:exon
so has part: feature:1019370-1019420:-1:exon
so has part: feature:1018762-1018854:-1:exon
so has part: feature:1017122-1017250:-1:exon
so has part: feature:1016482-1016588:-1:exon
so has part: feature:1014233-1014389:-1:exon
so has part: feature:1010552-1011767:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1028453-1028712:-1:exon

position:1028453:-1
position: 1028453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1023718-1023823:-1:exon

position:1023718:-1
position: 1023718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1023823:-1
position: 1023823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1022108-1022238:-1:exon

position:1022108:-1
position: 1022108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1022238:-1
position: 1022238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1019946-1020003:-1:exon

position:1019946:-1
position: 1019946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1020003:-1
position: 1020003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1019370-1019420:-1:exon

position:1019370:-1
position: 1019370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1019420:-1
position: 1019420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1018762-1018854:-1:exon

position:1018762:-1
position: 1018762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1018854:-1
position: 1018854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1017122-1017250:-1:exon

position:1017122:-1
position: 1017122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1017250:-1
position: 1017250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1016482-1016588:-1:exon

position:1016482:-1
position: 1016482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1016588:-1
position: 1016588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1014233-1014389:-1:exon

position:1014233:-1
position: 1014233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1014389:-1
position: 1014389
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1010552-1011767:-1:exon

position:1011767:-1
position: 1011767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CERS5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: CERS5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ceramide synthase 5
translation: MAAAAAAALRAWFWNERFWLPHNVTWADLAGEAGPPGSGLQYPRAAHVLSAFPLALGIFAVRLLFERFIAKPCAINLGIQDSGPHRAQPNAILEKVFTSITKSPDGKRLEGLSKQLDWDVRKIQRWFRHRRNQDKPTTLTKFCESMWRFTFYLSIFFYGIRFLWTAPWFWDTRQCWYNYPFQPLTSRLYYYYILELAFYWSLMFSQFTDIKRKDFLIMFVHHLATIGLITFSYMNNMVRVGTLVLCLHDASDFLLEAAKLANYAKYQRLCDAFFMLFGVVFIVTRLGIYPFWILNTTLFESWELIGPYPSWWLFNGLLVTLQVLHVIWSYLIVRTASKALVRGKVSKDDRSDVESSSEEEDVTSNSTKGIFSTSSNGSNRLNGHVAGAQWTGEE
SIO_010081: CERS5
subclass of: SO_0000673
so part of: CERS5
location: complement(join(1011615..1011767,1014233..1014389,1016482..1016588,1017122..1017250,1018762..1018854,1019370..1019420,1019946..1020003,1022108..1022238,1023718..1023823,1028453..1028652))
location: region:1011615-1028652:-1
so has part: feature:1028453-1028652:-1:exon
so has part: feature:1023718-1023823:-1:exon
so has part: feature:1022108-1022238:-1:exon
so has part: feature:1019946-1020003:-1:exon
so has part: feature:1019370-1019420:-1:exon
so has part: feature:1018762-1018854:-1:exon
so has part: feature:1017122-1017250:-1:exon
so has part: feature:1016482-1016588:-1:exon
so has part: feature:1014233-1014389:-1:exon
so has part: feature:1011615-1011767:-1:exon

XP_032939176.1
type: Protein
SIO_000068: ncbiprotein

position:1011615:-1
position: 1011615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1028652:-1
position: 1028652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1028453-1028652:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1023718-1023823:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1022108-1022238:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1019946-1020003:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1019370-1019420:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1018762-1018854:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1017122-1017250:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1016482-1016588:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1014233-1014389:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1011615-1011767:-1:exon

CERS5
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 91951
gene: CERS5
product: ceramide synthase 5, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XR_004420426.2
SIO_010081: CERS5
so part of: CERS5
location: complement(join(1011679..1011767,1013238..1013335,1014233..1014389,1016482..1016588,1017122..1017250,1018762..1018854,1019370..1019420,1019946..1020003,1022108..1022238,1023718..1023823,1028453..1028667))
location: region:1011679-1028667:-1
so has part: feature:1028453-1028667:-1:exon
so has part: feature:1023718-1023823:-1:exon
so has part: feature:1022108-1022238:-1:exon
so has part: feature:1019946-1020003:-1:exon
so has part: feature:1019370-1019420:-1:exon
so has part: feature:1018762-1018854:-1:exon
so has part: feature:1017122-1017250:-1:exon
so has part: feature:1016482-1016588:-1:exon
so has part: feature:1014233-1014389:-1:exon
so has part: feature:1013238-1013335:-1:exon
so has part: feature:1011679-1011767:-1:exon

position:1011679:-1
position: 1011679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1028667:-1
position: 1028667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1028453-1028667:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1023718-1023823:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1022108-1022238:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1019946-1020003:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1019370-1019420:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1018762-1018854:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1017122-1017250:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1016482-1016588:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1014233-1014389:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1013238-1013335:-1:exon

position:1013238:-1
position: 1013238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1013335:-1
position: 1013335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1011679-1011767:-1:exon

LIMA1
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: LIMA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1031243..1057397)
location: region:1031243-1057397:-1
so has part: feature:1031243-1057397:-1:exon
subclass of: SO_0000010

117009169
type: Gene
SIO_000068: ncbigene

position:1031243:-1
position: 1031243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1057397:-1
position: 1057397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1031243-1057397:-1:exon

LIMA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: LIMA1
product: LIM domain and actin binding 1, transcript variant X6
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083412.1
SIO_010081: LIMA1
subclass of: SO_0000673
so part of: LIMA1
location: complement(join(1031243..1033420,1033751..1033884,1036984..1037096,1037324..1037381,1039149..1039253,1041399..1041547,1043251..1043356,1047446..1047568,1052073..1052118,1053911..1054046,1057316..1057397))
location: region:1031243-1057397:-1
so has part: feature:1057316-1057397:-1:exon
so has part: feature:1053911-1054046:-1:exon
so has part: feature:1052073-1052118:-1:exon
so has part: feature:1047446-1047568:-1:exon
so has part: feature:1043251-1043356:-1:exon
so has part: feature:1041399-1041547:-1:exon
so has part: feature:1039149-1039253:-1:exon
so has part: feature:1037324-1037381:-1:exon
so has part: feature:1036984-1037096:-1:exon
so has part: feature:1033751-1033884:-1:exon
so has part: feature:1031243-1033420:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1057316-1057397:-1:exon

position:1057316:-1
position: 1057316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1053911-1054046:-1:exon

position:1053911:-1
position: 1053911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1054046:-1
position: 1054046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1052073-1052118:-1:exon

position:1052073:-1
position: 1052073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1052118:-1
position: 1052118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1047446-1047568:-1:exon

position:1047446:-1
position: 1047446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1047568:-1
position: 1047568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1043251-1043356:-1:exon

position:1043251:-1
position: 1043251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1043356:-1
position: 1043356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1041399-1041547:-1:exon

position:1041399:-1
position: 1041399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1041547:-1
position: 1041547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1039149-1039253:-1:exon

position:1039149:-1
position: 1039149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1039253:-1
position: 1039253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1037324-1037381:-1:exon

position:1037324:-1
position: 1037324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1037381:-1
position: 1037381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1036984-1037096:-1:exon

position:1036984:-1
position: 1036984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1037096:-1
position: 1037096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1033751-1033884:-1:exon

position:1033751:-1
position: 1033751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1033884:-1
position: 1033884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1031243-1033420:-1:exon

position:1033420:-1
position: 1033420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LIMA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: LIMA1
product: LIM domain and actin binding 1, transcript variant X5
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083411.1
SIO_010081: LIMA1
subclass of: SO_0000673
so part of: LIMA1
location: complement(join(1031243..1033420,1033751..1033884,1036984..1037096,1037324..1037381,1039149..1039253,1041399..1041547,1043251..1043359,1047446..1047568,1052073..1052118,1053911..1054046,1057316..1057397))
location: region:1031243-1057397:-1
so has part: feature:1057316-1057397:-1:exon
so has part: feature:1053911-1054046:-1:exon
so has part: feature:1052073-1052118:-1:exon
so has part: feature:1047446-1047568:-1:exon
so has part: feature:1043251-1043359:-1:exon
so has part: feature:1041399-1041547:-1:exon
so has part: feature:1039149-1039253:-1:exon
so has part: feature:1037324-1037381:-1:exon
so has part: feature:1036984-1037096:-1:exon
so has part: feature:1033751-1033884:-1:exon
so has part: feature:1031243-1033420:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1057316-1057397:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1053911-1054046:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1052073-1052118:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1047446-1047568:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1043251-1043359:-1:exon

position:1043359:-1
position: 1043359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1041399-1041547:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1039149-1039253:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1037324-1037381:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1036984-1037096:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1033751-1033884:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1031243-1033420:-1:exon

LIMA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: LIMA1
product: LIM domain and actin binding 1, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083409.1
SIO_010081: LIMA1
subclass of: SO_0000673
so part of: LIMA1
location: complement(join(1031243..1033420,1033751..1033884,1036984..1037096,1037324..1037381,1039149..1039253,1041399..1041547,1043251..1043356,1047200..1047568,1052073..1052118,1053911..1054046,1057316..1057397))
location: region:1031243-1057397:-1
so has part: feature:1057316-1057397:-1:exon
so has part: feature:1053911-1054046:-1:exon
so has part: feature:1052073-1052118:-1:exon
so has part: feature:1047200-1047568:-1:exon
so has part: feature:1043251-1043356:-1:exon
so has part: feature:1041399-1041547:-1:exon
so has part: feature:1039149-1039253:-1:exon
so has part: feature:1037324-1037381:-1:exon
so has part: feature:1036984-1037096:-1:exon
so has part: feature:1033751-1033884:-1:exon
so has part: feature:1031243-1033420:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1057316-1057397:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1053911-1054046:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1052073-1052118:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1047200-1047568:-1:exon

position:1047200:-1
position: 1047200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1043251-1043356:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1041399-1041547:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1039149-1039253:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1037324-1037381:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1036984-1037096:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1033751-1033884:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1031243-1033420:-1:exon

LIMA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: LIMA1
product: LIM domain and actin binding 1, transcript variant X4
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083410.1
SIO_010081: LIMA1
subclass of: SO_0000673
so part of: LIMA1
location: complement(join(1031243..1033420,1033751..1033884,1036984..1037096,1037324..1037381,1041399..1041547,1043251..1043359,1047200..1047568,1052073..1052118,1053911..1054046,1057316..1057397))
location: region:1031243-1057397:-1
so has part: feature:1057316-1057397:-1:exon
so has part: feature:1053911-1054046:-1:exon
so has part: feature:1052073-1052118:-1:exon
so has part: feature:1047200-1047568:-1:exon
so has part: feature:1043251-1043359:-1:exon
so has part: feature:1041399-1041547:-1:exon
so has part: feature:1037324-1037381:-1:exon
so has part: feature:1036984-1037096:-1:exon
so has part: feature:1033751-1033884:-1:exon
so has part: feature:1031243-1033420:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1057316-1057397:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1053911-1054046:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1052073-1052118:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1047200-1047568:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1043251-1043359:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1041399-1041547:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1037324-1037381:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1036984-1037096:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1033751-1033884:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1031243-1033420:-1:exon

LIMA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: LIMA1
product: LIM domain and actin binding 1, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083407.1
SIO_010081: LIMA1
subclass of: SO_0000673
so part of: LIMA1
location: complement(join(1031243..1033420,1033751..1033884,1036984..1037096,1037324..1037381,1039149..1039253,1041399..1041547,1043251..1043359,1047200..1047568,1052073..1052118,1053911..1054046,1057316..1057397))
location: region:1031243-1057397:-1
so has part: feature:1057316-1057397:-1:exon
so has part: feature:1053911-1054046:-1:exon
so has part: feature:1052073-1052118:-1:exon
so has part: feature:1047200-1047568:-1:exon
so has part: feature:1043251-1043359:-1:exon
so has part: feature:1041399-1041547:-1:exon
so has part: feature:1039149-1039253:-1:exon
so has part: feature:1037324-1037381:-1:exon
so has part: feature:1036984-1037096:-1:exon
so has part: feature:1033751-1033884:-1:exon
so has part: feature:1031243-1033420:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1057316-1057397:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1053911-1054046:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1052073-1052118:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1047200-1047568:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1043251-1043359:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1041399-1041547:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1039149-1039253:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1037324-1037381:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1036984-1037096:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1033751-1033884:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1031243-1033420:-1:exon

LIMA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: LIMA1
product: LIM domain and actin binding 1, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_033083408.1
SIO_010081: LIMA1
subclass of: SO_0000673
so part of: LIMA1
location: complement(join(1031243..1033420,1033751..1033884,1036984..1037096,1037324..1037381,1039149..1039253,1041399..1041547,1043251..1043359,1047200..1047568,1052073..1052118,1053911..1054046,1057257..1057336))
location: region:1031243-1057336:-1
so has part: feature:1057257-1057336:-1:exon
so has part: feature:1053911-1054046:-1:exon
so has part: feature:1052073-1052118:-1:exon
so has part: feature:1047200-1047568:-1:exon
so has part: feature:1043251-1043359:-1:exon
so has part: feature:1041399-1041547:-1:exon
so has part: feature:1039149-1039253:-1:exon
so has part: feature:1037324-1037381:-1:exon
so has part: feature:1036984-1037096:-1:exon
so has part: feature:1033751-1033884:-1:exon
so has part: feature:1031243-1033420:-1:exon

position:1057336:-1
position: 1057336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1057257-1057336:-1:exon

position:1057257:-1
position: 1057257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1053911-1054046:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1052073-1052118:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1047200-1047568:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1043251-1043359:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1041399-1041547:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1039149-1039253:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1037324-1037381:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1036984-1037096:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1033751-1033884:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1031243-1033420:-1:exon

LIMA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: LIMA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LIM domain and actin-binding protein 1 isoform X5
translation: MEPSPFSRRQWASQSLKITAKELSLVNKNKSSALAERFSKYQKAAEEATAEKKRSNTENLPAHFTRGNLSVLKKKWENPALGAEAGKETIRSSFAEGPREARRAAAGSRISENSLSLEDCDAAQGERSHSTGYPVETSPEKAEIRKNMDMPRLSETSIKDRLAKYQAAVSKQGTSSGSTPMSESQTSESELKNYKSGQKENVAPIEDCSSCQDGEKVSVGENSLSLHSGLLEDGHAGHSEIEAEAPKAASSKQQNLGAKAAGQTEASPPKGVKKFQLPMKETCVGCQKTVYPMERLFANQQVFHISCFRCSYCNSKLSLGTYASLRGNIYCKPHFNQLFKSKGNYDEGFGHKQHKELWAGKNECEESPEKSVHGVNAAETPQSPGVEDAPIAKVGILAASMEAKASAVPEREEKPAETKKLRIAWPPPSDQSTQGSALDEGIKVLKPKWPPEEEISKADVQEDVDLDLKKLRRSSSLKERSRPFTVAASFRTMSVKGHKIENSPSPSKEERDTLKRSEELEREVVIEKKQKEKKVEHRNIENAREKNVEEEQELFGVKTVEHNVVENGQVNADTDEEENTTEEPEIPKEELLEPNSPKHSSLAKESSPSQNRKSQDVGFWEGEDVEDLSVEEQIKRNRYYEDDDDDE
SIO_010081: LIMA1
subclass of: SO_0000673
so part of: LIMA1
location: complement(join(1032430..1033420,1033751..1033884,1036984..1037096,1037324..1037381,1039149..1039253,1041399..1041547,1043251..1043356,1047446..1047568,1052073..1052118,1053911..1054029))
location: region:1032430-1054029:-1
so has part: feature:1053911-1054029:-1:exon
so has part: feature:1052073-1052118:-1:exon
so has part: feature:1047446-1047568:-1:exon
so has part: feature:1043251-1043356:-1:exon
so has part: feature:1041399-1041547:-1:exon
so has part: feature:1039149-1039253:-1:exon
so has part: feature:1037324-1037381:-1:exon
so has part: feature:1036984-1037096:-1:exon
so has part: feature:1033751-1033884:-1:exon
so has part: feature:1032430-1033420:-1:exon

XP_032939303.1
type: Protein
SIO_000068: ncbiprotein

position:1032430:-1
position: 1032430
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1054029:-1
position: 1054029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1053911-1054029:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1052073-1052118:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1047446-1047568:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1043251-1043356:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1041399-1041547:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1039149-1039253:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1037324-1037381:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1036984-1037096:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1033751-1033884:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1032430-1033420:-1:exon

LIMA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: LIMA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LIM domain and actin-binding protein 1 isoform X4
translation: MEPSPFSRRQWASQSLKITAKELSLVNKNKSSALAERFSKYQKAAEEATAEKKRSNTENLPAHFTRGNLSVLKKKWENPALGAEAGKETIRSSFAEQGPREARRAAAGSRISENSLSLEDCDAAQGERSHSTGYPVETSPEKAEIRKNMDMPRLSETSIKDRLAKYQAAVSKQGTSSGSTPMSESQTSESELKNYKSGQKENVAPIEDCSSCQDGEKVSVGENSLSLHSGLLEDGHAGHSEIEAEAPKAASSKQQNLGAKAAGQTEASPPKGVKKFQLPMKETCVGCQKTVYPMERLFANQQVFHISCFRCSYCNSKLSLGTYASLRGNIYCKPHFNQLFKSKGNYDEGFGHKQHKELWAGKNECEESPEKSVHGVNAAETPQSPGVEDAPIAKVGILAASMEAKASAVPEREEKPAETKKLRIAWPPPSDQSTQGSALDEGIKVLKPKWPPEEEISKADVQEDVDLDLKKLRRSSSLKERSRPFTVAASFRTMSVKGHKIENSPSPSKEERDTLKRSEELEREVVIEKKQKEKKVEHRNIENAREKNVEEEQELFGVKTVEHNVVENGQVNADTDEEENTTEEPEIPKEELLEPNSPKHSSLAKESSPSQNRKSQDVGFWEGEDVEDLSVEEQIKRNRYYEDDDDDE
SIO_010081: LIMA1
subclass of: SO_0000673
so part of: LIMA1
location: complement(join(1032430..1033420,1033751..1033884,1036984..1037096,1037324..1037381,1039149..1039253,1041399..1041547,1043251..1043359,1047446..1047568,1052073..1052118,1053911..1054029))
location: region:1032430-1054029:-1
so has part: feature:1053911-1054029:-1:exon
so has part: feature:1052073-1052118:-1:exon
so has part: feature:1047446-1047568:-1:exon
so has part: feature:1043251-1043359:-1:exon
so has part: feature:1041399-1041547:-1:exon
so has part: feature:1039149-1039253:-1:exon
so has part: feature:1037324-1037381:-1:exon
so has part: feature:1036984-1037096:-1:exon
so has part: feature:1033751-1033884:-1:exon
so has part: feature:1032430-1033420:-1:exon

XP_032939302.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1053911-1054029:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1052073-1052118:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1047446-1047568:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1043251-1043359:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1041399-1041547:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1039149-1039253:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1037324-1037381:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1036984-1037096:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1033751-1033884:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1032430-1033420:-1:exon

LIMA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: LIMA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LIM domain and actin-binding protein 1 isoform X2
translation: MEPSPFSRRQWASQSLKITAKELSLVNKNKSSALAERFSKYQKAAEEATAEKKRSNTENLPAHFTRGNLSVLKKKWENPALGAEAGKETIRSSFAEVRHKVPSPGAGAASGQQQCPLGDSTEPQGHSRHGGTMENCGREMEKGESSERSESPGRIEKYNVPLNKLKMMFEKGEATQLKGPREARRAAAGSRISENSLSLEDCDAAQGERSHSTGYPVETSPEKAEIRKNMDMPRLSETSIKDRLAKYQAAVSKQGTSSGSTPMSESQTSESELKNYKSGQKENVAPIEDCSSCQDGEKVSVGENSLSLHSGLLEDGHAGHSEIEAEAPKAASSKQQNLGAKAAGQTEASPPKGVKKFQLPMKETCVGCQKTVYPMERLFANQQVFHISCFRCSYCNSKLSLGTYASLRGNIYCKPHFNQLFKSKGNYDEGFGHKQHKELWAGKNECEESPEKSVHGVNAAETPQSPGVEDAPIAKVGILAASMEAKASAVPEREEKPAETKKLRIAWPPPSDQSTQGSALDEGIKVLKPKWPPEEEISKADVQEDVDLDLKKLRRSSSLKERSRPFTVAASFRTMSVKGHKIENSPSPSKEERDTLKRSEELEREVVIEKKQKEKKVEHRNIENAREKNVEEEQELFGVKTVEHNVVENGQVNADTDEEENTTEEPEIPKEELLEPNSPKHSSLAKESSPSQNRKSQDVGFWEGEDVEDLSVEEQIKRNRYYEDDDDDE
SIO_010081: LIMA1
subclass of: SO_0000673
so part of: LIMA1
location: complement(join(1032430..1033420,1033751..1033884,1036984..1037096,1037324..1037381,1039149..1039253,1041399..1041547,1043251..1043356,1047200..1047568,1052073..1052118,1053911..1054029))
location: region:1032430-1054029:-1
so has part: feature:1053911-1054029:-1:exon
so has part: feature:1052073-1052118:-1:exon
so has part: feature:1047200-1047568:-1:exon
so has part: feature:1043251-1043356:-1:exon
so has part: feature:1041399-1041547:-1:exon
so has part: feature:1039149-1039253:-1:exon
so has part: feature:1037324-1037381:-1:exon
so has part: feature:1036984-1037096:-1:exon
so has part: feature:1033751-1033884:-1:exon
so has part: feature:1032430-1033420:-1:exon

XP_032939300.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1053911-1054029:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1052073-1052118:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1047200-1047568:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1043251-1043356:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1041399-1041547:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1039149-1039253:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1037324-1037381:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1036984-1037096:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1033751-1033884:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1032430-1033420:-1:exon

LIMA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: LIMA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LIM domain and actin-binding protein 1 isoform X3
translation: MEPSPFSRRQWASQSLKITAKELSLVNKNKSSALAERFSKYQKAAEEATAEKKRSNTENLPAHFTRGNLSVLKKKWENPALGAEAGKETIRSSFAEVRHKVPSPGAGAASGQQQCPLGDSTEPQGHSRHGGTMENCGREMEKGESSERSESPGRIEKYNVPLNKLKMMFEKGEATQLKQGPREARRAAAGSRISENSLSLEDCDAAQGERSHSTGYPVETSPEKAEIRKNMDMPRLSETSIKDRLAKYQAAVSKQGTSSGSTPMVSVGENSLSLHSGLLEDGHAGHSEIEAEAPKAASSKQQNLGAKAAGQTEASPPKGVKKFQLPMKETCVGCQKTVYPMERLFANQQVFHISCFRCSYCNSKLSLGTYASLRGNIYCKPHFNQLFKSKGNYDEGFGHKQHKELWAGKNECEESPEKSVHGVNAAETPQSPGVEDAPIAKVGILAASMEAKASAVPEREEKPAETKKLRIAWPPPSDQSTQGSALDEGIKVLKPKWPPEEEISKADVQEDVDLDLKKLRRSSSLKERSRPFTVAASFRTMSVKGHKIENSPSPSKEERDTLKRSEELEREVVIEKKQKEKKVEHRNIENAREKNVEEEQELFGVKTVEHNVVENGQVNADTDEEENTTEEPEIPKEELLEPNSPKHSSLAKESSPSQNRKSQDVGFWEGEDVEDLSVEEQIKRNRYYEDDDDDE
SIO_010081: LIMA1
subclass of: SO_0000673
so part of: LIMA1
location: complement(join(1032430..1033420,1033751..1033884,1036984..1037096,1037324..1037381,1041399..1041547,1043251..1043359,1047200..1047568,1052073..1052118,1053911..1054029))
location: region:1032430-1054029:-1
so has part: feature:1053911-1054029:-1:exon
so has part: feature:1052073-1052118:-1:exon
so has part: feature:1047200-1047568:-1:exon
so has part: feature:1043251-1043359:-1:exon
so has part: feature:1041399-1041547:-1:exon
so has part: feature:1037324-1037381:-1:exon
so has part: feature:1036984-1037096:-1:exon
so has part: feature:1033751-1033884:-1:exon
so has part: feature:1032430-1033420:-1:exon

XP_032939301.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1053911-1054029:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1052073-1052118:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1047200-1047568:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1043251-1043359:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1041399-1041547:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1037324-1037381:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1036984-1037096:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1033751-1033884:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1032430-1033420:-1:exon

LIMA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: LIMA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LIM domain and actin-binding protein 1 isoform X1
translation: MEPSPFSRRQWASQSLKITAKELSLVNKNKSSALAERFSKYQKAAEEATAEKKRSNTENLPAHFTRGNLSVLKKKWENPALGAEAGKETIRSSFAEVRHKVPSPGAGAASGQQQCPLGDSTEPQGHSRHGGTMENCGREMEKGESSERSESPGRIEKYNVPLNKLKMMFEKGEATQLKQGPREARRAAAGSRISENSLSLEDCDAAQGERSHSTGYPVETSPEKAEIRKNMDMPRLSETSIKDRLAKYQAAVSKQGTSSGSTPMSESQTSESELKNYKSGQKENVAPIEDCSSCQDGEKVSVGENSLSLHSGLLEDGHAGHSEIEAEAPKAASSKQQNLGAKAAGQTEASPPKGVKKFQLPMKETCVGCQKTVYPMERLFANQQVFHISCFRCSYCNSKLSLGTYASLRGNIYCKPHFNQLFKSKGNYDEGFGHKQHKELWAGKNECEESPEKSVHGVNAAETPQSPGVEDAPIAKVGILAASMEAKASAVPEREEKPAETKKLRIAWPPPSDQSTQGSALDEGIKVLKPKWPPEEEISKADVQEDVDLDLKKLRRSSSLKERSRPFTVAASFRTMSVKGHKIENSPSPSKEERDTLKRSEELEREVVIEKKQKEKKVEHRNIENAREKNVEEEQELFGVKTVEHNVVENGQVNADTDEEENTTEEPEIPKEELLEPNSPKHSSLAKESSPSQNRKSQDVGFWEGEDVEDLSVEEQIKRNRYYEDDDDDE
SIO_010081: LIMA1
subclass of: SO_0000673
so part of: LIMA1
location: complement(join(1032430..1033420,1033751..1033884,1036984..1037096,1037324..1037381,1039149..1039253,1041399..1041547,1043251..1043359,1047200..1047568,1052073..1052118,1053911..1054029))
location: region:1032430-1054029:-1
so has part: feature:1053911-1054029:-1:exon
so has part: feature:1052073-1052118:-1:exon
so has part: feature:1047200-1047568:-1:exon
so has part: feature:1043251-1043359:-1:exon
so has part: feature:1041399-1041547:-1:exon
so has part: feature:1039149-1039253:-1:exon
so has part: feature:1037324-1037381:-1:exon
so has part: feature:1036984-1037096:-1:exon
so has part: feature:1033751-1033884:-1:exon
so has part: feature:1032430-1033420:-1:exon

XP_032939298.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1053911-1054029:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1052073-1052118:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1047200-1047568:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1043251-1043359:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1041399-1041547:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1039149-1039253:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1037324-1037381:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1036984-1037096:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1033751-1033884:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1032430-1033420:-1:exon

LIMA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91951
gene: LIMA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LIM domain and actin-binding protein 1 isoform X1
translation: MEPSPFSRRQWASQSLKITAKELSLVNKNKSSALAERFSKYQKAAEEATAEKKRSNTENLPAHFTRGNLSVLKKKWENPALGAEAGKETIRSSFAEVRHKVPSPGAGAASGQQQCPLGDSTEPQGHSRHGGTMENCGREMEKGESSERSESPGRIEKYNVPLNKLKMMFEKGEATQLKQGPREARRAAAGSRISENSLSLEDCDAAQGERSHSTGYPVETSPEKAEIRKNMDMPRLSETSIKDRLAKYQAAVSKQGTSSGSTPMSESQTSESELKNYKSGQKENVAPIEDCSSCQDGEKVSVGENSLSLHSGLLEDGHAGHSEIEAEAPKAASSKQQNLGAKAAGQTEASPPKGVKKFQLPMKETCVGCQKTVYPMERLFANQQVFHISCFRCSYCNSKLSLGTYASLRGNIYCKPHFNQLFKSKGNYDEGFGHKQHKELWAGKNECEESPEKSVHGVNAAETPQSPGVEDAPIAKVGILAASMEAKASAVPEREEKPAETKKLRIAWPPPSDQSTQGSALDEGIKVLKPKWPPEEEISKADVQEDVDLDLKKLRRSSSLKERSRPFTVAASFRTMSVKGHKIENSPSPSKEERDTLKRSEELEREVVIEKKQKEKKVEHRNIENAREKNVEEEQELFGVKTVEHNVVENGQVNADTDEEENTTEEPEIPKEELLEPNSPKHSSLAKESSPSQNRKSQDVGFWEGEDVEDLSVEEQIKRNRYYEDDDDDE
SIO_010081: LIMA1
subclass of: SO_0000673
so part of: LIMA1
location: complement(join(1032430..1033420,1033751..1033884,1036984..1037096,1037324..1037381,1039149..1039253,1041399..1041547,1043251..1043359,1047200..1047568,1052073..1052118,1053911..1054029))
location: region:1032430-1054029:-1
so has part: feature:1053911-1054029:-1:exon
so has part: feature:1052073-1052118:-1:exon
so has part: feature:1047200-1047568:-1:exon
so has part: feature:1043251-1043359:-1:exon
so has part: feature:1041399-1041547:-1:exon
so has part: feature:1039149-1039253:-1:exon
so has part: feature:1037324-1037381:-1:exon
so has part: feature:1036984-1037096:-1:exon
so has part: feature:1033751-1033884:-1:exon
so has part: feature:1032430-1033420:-1:exon

XP_032939299.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1053911-1054029:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1052073-1052118:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1047200-1047568:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1043251-1043359:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1041399-1041547:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1039149-1039253:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1037324-1037381:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1036984-1037096:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1033751-1033884:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1032430-1033420:-1:exon

LARP4
type: Gene
subclass of: SO_0000704
RO_0002162: 91951
gene: LARP4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1068150..1088180
location: region:1068150-1088180:1
so has part: feature:1068150-1088180:1:exon
subclass of: SO_0000010

117009130
type: Gene
SIO_000068: ncbigene

position:1068150:1
position: 1068150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1088180:1
position: 1088180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1068150-1088180:1:exon

LARP4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 91951
gene: LARP4
product: La ribonucleoprotein 4, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_033083350.1
SIO_010081: LARP4
subclass of: SO_0000673
so part of: LARP4
location: join(1068150..1068228,1073074..1073221,1074382..1074540,1074855..1074930,1075413..1075549,1075806..1075909,1076799..1076909,1077270..1077323,1078131..1078340,1078732..1078835,1080958..1081182,1081731..1081779,1081981..1082139,1082616..1082737,1083953..1084121,1085612..1088180)
location: region:1068150-1088180:1
so has part: feature:1068150-1068228:1:exon
so has part: feature:1073074-1073221:1:exon
so has part: feature:1074382-1074540:1:exon
so has part: feature:1074855-1074930:1:exon
so has part: feature:1075413-1075549:1:exon
so has part: feature:1075806-1075909:1:exon
so has part: feature:1076799-1076909:1:exon
so has part: feature:1077270-1077323:1:exon
so has part: feature:1078131-1078340:1:exon
so has part: feature:1078732-1078835:1:exon
so has part: feature:1080958-1081182:1:exon
so has part: feature:1081731-1081779:1:exon
so has part: feature:1081981-1082139:1:exon
so has part: feature:1082616-1082737:1:exon
so has part: feature:1083953-1084121:1:exon
so has part: feature:1085612-1088180:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1068150-1068228:1:exon

position:1068228:1
position: 1068228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1073074-1073221:1:exon

position:1073074:1
position: 1073074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1073221:1
position: 1073221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1074382-1074540:1:exon

position:1074382:1
position: 1074382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1074540:1
position: 1074540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1074855-1074930:1:exon