Catharus ustulatus isolate bCatUst1 chromosome 28, bCatUst1.pri.v2, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Turdidae; Catharus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM020363.1.\nAssembly name: bCatUst1.pri.v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2020/12/22. The original whole-genome shotgun project has the\naccession WNMQ00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 06-AUG-2020\nAssembly Method :: FALCON v. DX 1.9.0; FALCON-Unzip v.\n 6.0.0.47841; purge_dups github v.\n purge_haplotig (bitbucket v1.0.3+\n 1.Nov.2018); Scaff10x v. 2; Bionano Solve\n v. 3.2.1_04122018; Salsa2 HiC v. 2.2;\n Arrow polishing and gap filling v.\n Smrtlink_6.0.0.47841; Longranger Align v.\n 2.2.2; freebayes v. 1.3.1; gEVAL manual\n curation v. 2020-08-06; VGP assembly\n pipeline v. 1.5\nAssembly Name :: bCatUst1.pri.v2\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 60.58x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Catharus ustulatus Annotation\n Release 101\nAnnotation Version :: 101\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
leucine-rich repeat LGI family member 4-like
COORDINATES: polyA evidence [ECO:0006239]
uncharacterized LOC117008194, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
uncharacterized LOC117008194, transcript variant X1
uncharacterized LOC117008194, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
H/ACA ribonucleoprotein complex subunit 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 3 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein 629-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins, and 83% coverage of the annotated genomic feature by RNAseq alignments
serine/threonine-protein kinase PAK 3-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: serine/threonine-protein kinase PAK 3-like
serine/threonine-protein kinase pim-1-like
ST14 transmembrane serine protease matriptase, transcript variant X5
ST14 transmembrane serine protease matriptase, transcript variant X3
ST14 transmembrane serine protease matriptase, transcript variant X4
ST14 transmembrane serine protease matriptase, transcript variant X2
ST14 transmembrane serine protease matriptase, transcript variant X1
ST14 transmembrane serine protease matriptase, transcript variant X6
suppressor of tumorigenicity 14 protein isoform X3
suppressor of tumorigenicity 14 protein isoform X2
suppressor of tumorigenicity 14 protein isoform X1
suppressor of tumorigenicity 14 protein isoform X4
nuclear factor related to kappaB binding protein, transcript variant X2
nuclear factor related to kappaB binding protein, transcript variant X1
nuclear factor related to kappa-B-binding protein isoform X2
nuclear factor related to kappa-B-binding protein isoform X1
PR/SET domain 10, transcript variant X11
PR/SET domain 10, transcript variant X10
PR/SET domain 10, transcript variant X13
PR/SET domain 10, transcript variant X14
PR/SET domain 10, transcript variant X12
PR domain zinc finger protein 10 isoform X4
PR domain zinc finger protein 10 isoform X3
PR domain zinc finger protein 10 isoform X2
PR domain zinc finger protein 10 isoform X1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
LOW QUALITY PROTEIN: amyloid-like protein 2
transmembrane protein 45B-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transmembrane protein 45B-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transmembrane protein 45B-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transmembrane protein 45B-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transmembrane protein 45B, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
transmembrane protein 45B, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 30% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
ETS proto-oncogene 1, transcription factor, transcript variant X1
ETS proto-oncogene 1, transcription factor, transcript variant X2
ETS proto-oncogene 1, transcription factor, transcript variant X3
kirre like nephrin family adhesion molecule 3, transcript variant X1
kirre like nephrin family adhesion molecule 3, transcript variant X2
kirre like nephrin family adhesion molecule 3, transcript variant X3
uncharacterized LOC117008026, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
uncharacterized LOC117008026, transcript variant X1
ST3 beta-galactoside alpha-2,3-sialyltransferase 4, transcript variant X4
ST3 beta-galactoside alpha-2,3-sialyltransferase 4, transcript variant X2
ST3 beta-galactoside alpha-2,3-sialyltransferase 4, transcript variant X1
ST3 beta-galactoside alpha-2,3-sialyltransferase 4, transcript variant X3
CMP-N-acetylneuraminate-beta-galactosamide- alpha-2,3-sialyltransferase 4 isoform X2
CMP-N-acetylneuraminate-beta-galactosamide- alpha-2,3-sialyltransferase 4 isoform X1
CMP-N-acetylneuraminate-beta-galactosamide- alpha-2,3-sialyltransferase 4 isoform X3
TIR domain containing adaptor protein, transcript variant X8
TIR domain containing adaptor protein, transcript variant X9
TIR domain containing adaptor protein, transcript variant X7
TIR domain containing adaptor protein, transcript variant X1
TIR domain containing adaptor protein, transcript variant X3
TIR domain containing adaptor protein, transcript variant X12
TIR domain containing adaptor protein, transcript variant X11
TIR domain containing adaptor protein, transcript variant X10
TIR domain containing adaptor protein, transcript variant X6
TIR domain containing adaptor protein, transcript variant X5
TIR domain containing adaptor protein, transcript variant X2
TIR domain containing adaptor protein, transcript variant X4
toll/interleukin-1 receptor domain-containing adapter protein
family with sequence similarity 118 member B, transcript variant X1
family with sequence similarity 118 member B, transcript variant X3
family with sequence similarity 118 member B, transcript variant X4
family with sequence similarity 118 member B, transcript variant X2
signal recognition particle receptor subunit alpha
FAD dependent oxidoreductase domain containing 1
FAD-dependent oxidoreductase domain-containing protein 1
EI24 autophagy associated transmembrane protein
STT3 oligosaccharyltransferase complex catalytic subunit A, transcript variant X1
STT3 oligosaccharyltransferase complex catalytic subunit A, transcript variant X2
STT3 oligosaccharyltransferase complex catalytic subunit A, transcript variant X3
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 5 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
cell adhesion associated, oncogene regulated, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
cell adhesion associated, oncogene regulated, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
cell adhesion molecule-related/down-regulated by oncogenes
V-set and immunoglobulin domain containing 10 like 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 30% coverage of the annotated genomic feature by RNAseq alignments
V-set and immunoglobulin domain-containing protein 10-like 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
HYLS1 centriolar and ciliogenesis associated
RNA pseudouridine synthase D4, transcript variant X1
RNA pseudouridine synthase D4, transcript variant X2
mitochondrial RNA pseudouridine synthase RPUSD4 isoform X1
mitochondrial RNA pseudouridine synthase RPUSD4 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
endothelial cell-selective adhesion molecule-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
endothelial cell-selective adhesion molecule-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
endothelial cell-selective adhesion molecule-like isoform X1
endothelial cell-selective adhesion molecule-like isoform X2
Myb/SANT DNA binding domain containing 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 8 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
Myb/SANT DNA binding domain containing 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Myb/SANT DNA binding domain containing 2, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
myb/SANT-like DNA-binding domain-containing protein 2 isoform X1
myb/SANT-like DNA-binding domain-containing protein 2 isoform X2
Myb/SANT DNA binding domain containing 2, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 84% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Myb/SANT DNA binding domain containing 2, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 91% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
myb/SANT-like DNA-binding domain-containing protein 2 isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
roundabout guidance receptor 4, transcript variant X6
roundabout guidance receptor 4, transcript variant X7
roundabout guidance receptor 4, transcript variant X3
roundabout guidance receptor 4, transcript variant X2
roundabout guidance receptor 4, transcript variant X5
roundabout guidance receptor 4, transcript variant X4
roundabout guidance receptor 4, transcript variant X1
hepatic and glial cell adhesion molecule
coiled-coil domain containing 15, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
coiled-coil domain containing 15, transcript variant X2
coiled-coil domain containing 15, transcript variant X1
coiled-coil domain-containing protein 15 isoform X1
coiled-coil domain-containing protein 15 isoform X2
coiled-coil domain-containing protein 15 isoform X3
coiled-coil domain containing 15, transcript variant X5
coiled-coil domain containing 15, transcript variant X4
coiled-coil domain containing 15, transcript variant X6
coiled-coil domain-containing protein 15 isoform X4
coiled-coil domain containing 15, transcript variant X7
coiled-coil domain-containing protein 15 isoform X5
solute carrier family 37 member 2, transcript variant X1
solute carrier family 37 member 2, transcript variant X2
transmembrane protein 218, transcript variant X1
transmembrane protein 218, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
PBX/knotted 1 homeobox 2, transcript variant X3
PBX/knotted 1 homeobox 2, transcript variant X1
PBX/knotted 1 homeobox 2, transcript variant X2
fasciculation and elongation protein zeta 1, transcript variant X1
fasciculation and elongation protein zeta 1, transcript variant X2
fasciculation and elongation protein zeta-1
zinc finger and BTB domain containing 44, transcript variant X2
zinc finger and BTB domain containing 44, transcript variant X1
zinc finger and BTB domain-containing protein 44 isoform X2
zinc finger and BTB domain-containing protein 44 isoform X1
zinc finger and BTB domain containing 44, transcript variant X3
zinc finger and BTB domain-containing protein 44 isoform X3
ADAM metallopeptidase with thrombospondin type 1 motif 8
A disintegrin and metalloproteinase with thrombospondin motifs 8
ADAM metallopeptidase with thrombospondin type 1 motif 15
A disintegrin and metalloproteinase with thrombospondin motifs 15
opioid-binding protein/cell adhesion molecule homolog, transcript variant X3
opioid-binding protein/cell adhesion molecule homolog, transcript variant X4
opioid-binding protein/cell adhesion molecule homolog, transcript variant X2
opioid-binding protein/cell adhesion molecule homolog, transcript variant X1
opioid-binding protein/cell adhesion molecule homolog, transcript variant X5
opioid-binding protein/cell adhesion molecule homolog isoform X4
opioid-binding protein/cell adhesion molecule homolog isoform X3
opioid-binding protein/cell adhesion molecule homolog isoform X2
opioid-binding protein/cell adhesion molecule homolog isoform X1
opioid-binding protein/cell adhesion molecule homolog isoform X5
immunoglobulin superfamily member 9B, transcript variant X11
immunoglobulin superfamily member 9B, transcript variant X10
immunoglobulin superfamily member 9B, transcript variant X9
immunoglobulin superfamily member 9B, transcript variant X8
immunoglobulin superfamily member 9B, transcript variant X7
immunoglobulin superfamily member 9B, transcript variant X6
immunoglobulin superfamily member 9B, transcript variant X4
immunoglobulin superfamily member 9B, transcript variant X5
immunoglobulin superfamily member 9B, transcript variant X2
immunoglobulin superfamily member 9B, transcript variant X3
immunoglobulin superfamily member 9B, transcript variant X1
immunoglobulin superfamily member 9B, transcript variant X12
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
immunoglobulin superfamily member 9B, transcript variant X14
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
immunoglobulin superfamily member 9B, transcript variant X13
acyl-CoA dehydrogenase family member 8, transcript variant X2
vacuolar protein sorting-associated protein 26B
thymocyte nuclear protein 1, transcript variant X2
thymocyte nuclear protein 1, transcript variant X1
acyl-CoA dehydrogenase family member 8, transcript variant X1
isobutyryl-CoA dehydrogenase, mitochondrial isoform X1
isobutyryl-CoA dehydrogenase, mitochondrial isoform X2
beta-galactosidase-1-like protein 2, transcript variant X1
beta-galactosidase-1-like protein 2, transcript variant X2
beta-galactosidase-1-like protein 2, transcript variant X3
beta-galactosidase-1-like protein 2, transcript variant X4
beta-galactosidase-1-like protein 2 isoform X1
beta-galactosidase-1-like protein 2 isoform X2
beta-galactosidase-1-like protein 2 isoform X3
beta-galactosidase-1-like protein 2 isoform X4
beta-1,3-glucuronyltransferase 1, transcript variant X4
beta-1,3-glucuronyltransferase 1, transcript variant X3
beta-1,3-glucuronyltransferase 1, transcript variant X2
beta-1,3-glucuronyltransferase 1, transcript variant X1
beta-1,3-glucuronyltransferase 1, transcript variant X6
beta-1,3-glucuronyltransferase 1, transcript variant X5
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X6
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X5
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X2
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X1
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X4
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 92% coverage of the annotated genomic feature by RNAseq alignments
platelet endothelial aggregation receptor 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 79% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 89% coverage of the annotated genomic feature by RNAseq alignments
ATPase H+/K+ transporting non-gastric alpha2 subunit
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 41 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
potassium-transporting ATPase alpha chain 2
sodium voltage-gated channel beta subunit 3
GRAM domain containing 1B, transcript variant X2
GRAM domain containing 1B, transcript variant X3
GRAM domain containing 1B, transcript variant X1
GRAM domain containing 1B, transcript variant X4
GRAM domain containing 1B, transcript variant X5
GRAM domain containing 1B, transcript variant X6
GRAM domain containing 1B, transcript variant X8
GRAM domain containing 1B, transcript variant X7
GRAM domain containing 1B, transcript variant X9
GRAM domain containing 1B, transcript variant X10
GRAM domain containing 1B, transcript variant X12
GRAM domain containing 1B, transcript variant X14
GRAM domain containing 1B, transcript variant X13
GRAM domain containing 1B, transcript variant X11
GRAM domain containing 1B, transcript variant X15
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
GRAM domain containing 1B, transcript variant X16
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: CXADR-like membrane protein
heat shock protein family A (Hsp70) member 8
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 3 codons; deleted 5 bases in 5 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 3 codons; deleted 5 bases in 5 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: heat shock cognate 71 kDa protein
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00016
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
cytotoxic and regulatory T cell molecule
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 31% coverage of the annotated genomic feature by RNAseq alignments
cytotoxic and regulatory T-cell molecule
ubiquitin associated and SH3 domain containing B
ubiquitin-associated and SH3 domain-containing protein B
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC117008074, transcript variant X1
uncharacterized LOC117008074, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
sortilin related receptor 1, transcript variant X1
sortilin related receptor 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 8 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
tubulin-specific chaperone cofactor E-like protein
glutamate ionotropic receptor kainate type subunit 4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 1 EST, 106 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
glutamate receptor ionotropic, kainate 4
Rho guanine nucleotide exchange factor 12, transcript variant X1
Rho guanine nucleotide exchange factor 12, transcript variant X2
rho guanine nucleotide exchange factor 12 isoform X1
rho guanine nucleotide exchange factor 12 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 27% coverage of the annotated genomic feature by RNAseq alignments
POU domain, class 2, transcription factor 3
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 5 bases in 4 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 6 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 5 bases in 4 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: out at first protein homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 19% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 3 bases in 3 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin specific peptidase 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
ubiquitin carboxyl-terminal hydrolase 2 isoform X1
ubiquitin specific peptidase 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
ubiquitin carboxyl-terminal hydrolase 2 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
complement C1q tumor necrosis factor-related protein 5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 17 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
Na(+)/H(+) exchange regulatory cofactor NHE-RF4
NLR family member X1, transcript variant X2
NLR family member X1, transcript variant X1
ATP binding cassette subfamily G member 4, transcript variant X2
ATP binding cassette subfamily G member 4, transcript variant X1
ATP-binding cassette sub-family G member 4
sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 96% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 26% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized protein C11orf53 homolog
POU class 2 homeobox associating factor 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 71% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 63% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: serine/threonine-protein kinase SIK2
ALG9 alpha-1,2-mannosyltransferase, transcript variant X1
ALG9 alpha-1,2-mannosyltransferase, transcript variant X2
ALG9 alpha-1,2-mannosyltransferase, transcript variant X3
alpha-1,2-mannosyltransferase ALG9 isoform X3
alpha-1,2-mannosyltransferase ALG9 isoform X2
alpha-1,2-mannosyltransferase ALG9 isoform X1
ferredoxin-fold anticodon binding domain containing 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
ferredoxin-fold anticodon-binding domain-containing protein 1
heat shock protein family B (small) member 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
uncharacterized protein C11orf52 homolog
DIX domain containing 1, transcript variant X2
DIX domain containing 1, transcript variant X1
DIX domain containing 1, transcript variant X3
DIX domain containing 1, transcript variant X4
dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial
succinate dehydrogenase complex subunit D, transcript variant X2
succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X2
succinate dehydrogenase complex subunit D, transcript variant X1
succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
beta-carotene oxygenase 2, transcript variant X2
beta,beta-carotene 9',10'-oxygenase isoform X2
beta-carotene oxygenase 2, transcript variant X1
beta-carotene oxygenase 2, transcript variant X3
beta,beta-carotene 9',10'-oxygenase isoform X1
beta,beta-carotene 9',10'-oxygenase isoform X3
neural cell adhesion molecule 1, transcript variant X1
neural cell adhesion molecule 1, transcript variant X8
neural cell adhesion molecule 1, transcript variant X2
neural cell adhesion molecule 1, transcript variant X3
neural cell adhesion molecule 1, transcript variant X9
neural cell adhesion molecule 1, transcript variant X4
neural cell adhesion molecule 1, transcript variant X12
neural cell adhesion molecule 1, transcript variant X5
neural cell adhesion molecule 1, transcript variant X6
neural cell adhesion molecule 1, transcript variant X13
neural cell adhesion molecule 1, transcript variant X7
neural cell adhesion molecule 1, transcript variant X14
neural cell adhesion molecule 1, transcript variant X10
neural cell adhesion molecule 1, transcript variant X15
neural cell adhesion molecule 1, transcript variant X11
neural cell adhesion molecule 1 isoform X1
neural cell adhesion molecule 1 isoform X8
neural cell adhesion molecule 1 isoform X2
neural cell adhesion molecule 1 isoform X3
neural cell adhesion molecule 1 isoform X9
neural cell adhesion molecule 1 isoform X4
neural cell adhesion molecule 1 isoform X12
neural cell adhesion molecule 1 isoform X5
neural cell adhesion molecule 1 isoform X6
neural cell adhesion molecule 1 isoform X13
neural cell adhesion molecule 1 isoform X7
neural cell adhesion molecule 1 isoform X14
neural cell adhesion molecule 1 isoform X10
neural cell adhesion molecule 1 isoform X15
neural cell adhesion molecule 1 isoform X11
tetratricopeptide repeat domain 12, transcript variant X2
tetratricopeptide repeat domain 12, transcript variant X1
tetratricopeptide repeat domain 12, transcript variant X3
tetratricopeptide repeat domain 12, transcript variant X4
tetratricopeptide repeat protein 12 isoform X1
tetratricopeptide repeat protein 12 isoform X2
tetratricopeptide repeat protein 12 isoform X3
tetratricopeptide repeat protein 12 isoform X4
ankyrin repeat and kinase domain containing 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments
ankyrin repeat and protein kinase domain-containing protein 1
dopamine receptor D2, transcript variant X1
dopamine receptor D2, transcript variant X3
dopamine receptor D2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
centromere/kinetochore protein zw10 homolog
T-cell surface glycoprotein CD3 delta chain-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
T-cell surface glycoprotein CD3 epsilon chain
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 28% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
junctional adhesion molecule-like, transcript variant X2
junctional adhesion molecule-like, transcript variant X1
junctional adhesion molecule-like isoform X1
junctional adhesion molecule-like isoform X2
sodium voltage-gated channel beta subunit 2, transcript variant X1
sodium channel subunit beta-2 isoform X1
sodium voltage-gated channel beta subunit 2, transcript variant X2
sodium channel subunit beta-2 isoform X2
sodium voltage-gated channel beta subunit 4, transcript variant X1
sodium channel subunit beta-4 isoform X1
sodium voltage-gated channel beta subunit 4, transcript variant X3
sodium voltage-gated channel beta subunit 4, transcript variant X2
sodium channel subunit beta-4 isoform X2
sodium channel subunit beta-4 isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 49% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 78% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 81% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: transmembrane protease serine 13
FXYD domain containing ion transport regulator 6, transcript variant X3
FXYD domain containing ion transport regulator 6, transcript variant X4
FXYD domain containing ion transport regulator 6, transcript variant X1
FXYD domain-containing ion transport regulator 6 isoform X1
FXYD domain containing ion transport regulator 6, transcript variant X2
FXYD domain-containing ion transport regulator 6 isoform X2
FXYD domain-containing ion transport regulator 6 isoform X3
FXYD domain containing ion transport regulator 2, transcript variant X3
sodium/potassium-transporting ATPase subunit gamma isoform X3
FXYD domain containing ion transport regulator 2, transcript variant X1
FXYD domain containing ion transport regulator 2, transcript variant X2
sodium/potassium-transporting ATPase subunit gamma isoform X1
sodium/potassium-transporting ATPase subunit gamma isoform X2
Down syndrome cell adhesion molecule-like protein 1
centrosomal protein 164, transcript variant X3
centrosomal protein 164, transcript variant X4
centrosomal protein 164, transcript variant X6
centrosomal protein 164, transcript variant X5
centrosomal protein 164, transcript variant X2
centrosomal protein 164, transcript variant X1
centrosomal protein of 164 kDa isoform X3
centrosomal protein of 164 kDa isoform X2
centrosomal protein of 164 kDa isoform X1
proprotein convertase subtilisin/kexin type 7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 5 ESTs, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
SID1 transmembrane family member 2, transcript variant X2
SID1 transmembrane family member 2, transcript variant X1
SID1 transmembrane family member 2 isoform X2
SID1 transmembrane family member 2 isoform X1
platelet activating factor acetylhydrolase 1b catalytic subunit 2
platelet-activating factor acetylhydrolase IB subunit alpha2
SIK family kinase 3, transcript variant X1
SIK family kinase 3, transcript variant X3
SIK family kinase 3, transcript variant X4
SIK family kinase 3, transcript variant X2
serine/threonine-protein kinase SIK3 isoform X1
serine/threonine-protein kinase SIK3 isoform X2
serine/threonine-protein kinase SIK3 isoform X3
serine/threonine-protein kinase SIK3 isoform X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
zinc finger and BTB domain containing 16, transcript variant X3
zinc finger and BTB domain containing 16, transcript variant X4
zinc finger and BTB domain containing 16, transcript variant X2
zinc finger and BTB domain containing 16, transcript variant X1
zinc finger and BTB domain-containing protein 16
5-hydroxytryptamine receptor 3A-like, transcript variant X3
5-hydroxytryptamine receptor 3A-like isoform X3
5-hydroxytryptamine receptor 3A-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
5-hydroxytryptamine receptor 3A-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
5-hydroxytryptamine receptor 3A-like isoform X2
5-hydroxytryptamine receptor 3A-like isoform X1
ubiquitin specific peptidase 28, transcript variant X1
ubiquitin specific peptidase 28, transcript variant X2
ubiquitin carboxyl-terminal hydrolase 28 isoform X1
ubiquitin carboxyl-terminal hydrolase 28 isoform X2
ubiquitin specific peptidase 28, transcript variant X3
ubiquitin carboxyl-terminal hydrolase 28 isoform X3
G protein-activated inward rectifier potassium channel 4-like
lysine methyltransferase 2A, transcript variant X1
histone-lysine N-methyltransferase 2A isoform X1
lysine methyltransferase 2A, transcript variant X2
histone-lysine N-methyltransferase 2A isoform X2
tetratricopeptide repeat domain 36, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments
tetratricopeptide repeat domain 36, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments
tetratricopeptide repeat protein 36 isoform X1
tetratricopeptide repeat protein 36 isoform X2
intraflagellar transport protein 46 homolog
pleckstrin homology like domain family B member 1, transcript variant X7
pleckstrin homology like domain family B member 1, transcript variant X19
pleckstrin homology like domain family B member 1, transcript variant X20
pleckstrin homology like domain family B member 1, transcript variant X2
pleckstrin homology like domain family B member 1, transcript variant X6
pleckstrin homology like domain family B member 1, transcript variant X3
pleckstrin homology like domain family B member 1, transcript variant X8
pleckstrin homology like domain family B member 1, transcript variant X1
pleckstrin homology like domain family B member 1, transcript variant X4
pleckstrin homology like domain family B member 1, transcript variant X9
pleckstrin homology like domain family B member 1, transcript variant X10
pleckstrin homology like domain family B member 1, transcript variant X5
pleckstrin homology like domain family B member 1, transcript variant X11
pleckstrin homology like domain family B member 1, transcript variant X12
pleckstrin homology like domain family B member 1, transcript variant X14
pleckstrin homology like domain family B member 1, transcript variant X13
pleckstrin homology like domain family B member 1, transcript variant X15
pleckstrin homology like domain family B member 1, transcript variant X17
pleckstrin homology like domain family B member 1, transcript variant X16
pleckstrin homology like domain family B member 1, transcript variant X18
pleckstrin homology-like domain family B member 1 isoform X2
pleckstrin homology-like domain family B member 1 isoform X10
pleckstrin homology-like domain family B member 1 isoform X6
pleckstrin homology-like domain family B member 1 isoform X1
pleckstrin homology-like domain family B member 1 isoform X4
pleckstrin homology-like domain family B member 1 isoform X3
pleckstrin homology-like domain family B member 1 isoform X5
pleckstrin homology-like domain family B member 1 isoform X9
pleckstrin homology-like domain family B member 1 isoform X12
pleckstrin homology-like domain family B member 1 isoform X14
pleckstrin homology-like domain family B member 1 isoform X11
pleckstrin homology-like domain family B member 1 isoform X13
pleckstrin homology-like domain family B member 1 isoform X15
pleckstrin homology-like domain family B member 1 isoform X16
pleckstrin homology-like domain family B member 1 isoform X8
pleckstrin homology-like domain family B member 1 isoform X17
pleckstrin homology-like domain family B member 1 isoform X18
pleckstrin homology-like domain family B member 1 isoform X19
pleckstrin homology-like domain family B member 1 isoform X7
solute carrier family 37 member 4, transcript variant X1
solute carrier family 37 member 4, transcript variant X2
glucose-6-phosphate exchanger SLC37A4 isoform X1
glucose-6-phosphate exchanger SLC37A4 isoform X2
trafficking protein particle complex subunit 4
B-cell CLL/lymphoma 9-like protein isoform X1
B-cell CLL/lymphoma 9-like protein isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 3 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
DEAD-box helicase 6, transcript variant X2
DEAD-box helicase 6, transcript variant X1
DEAD-box helicase 6, transcript variant X3
probable ATP-dependent RNA helicase DDX6
VPS11 core subunit of CORVET and HOPS complexes
vacuolar protein sorting-associated protein 11 homolog
hydroxymethylbilane synthase, transcript variant X1
hydroxymethylbilane synthase, transcript variant X2
hydroxymethylbilane synthase, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 76 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
dolichyl-phosphate N-acetylglucosaminephosphotransferase 1
UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase
phospholipid transfer protein C2CD2L isoform X3
phospholipid transfer protein C2CD2L isoform X1
phospholipid transfer protein C2CD2L isoform X2
phospholipid transfer protein C2CD2L isoform X4
phospholipid transfer protein C2CD2L isoform X5
phospholipid transfer protein C2CD2L isoform X6
protein sidekick-2-like, transcript variant X7
protein sidekick-2-like, transcript variant X6
protein sidekick-2-like, transcript variant X4
protein sidekick-2-like, transcript variant X2
protein sidekick-2-like, transcript variant X5
protein sidekick-2-like, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
protein sidekick-2-like, transcript variant X10
protein sidekick-2-like, transcript variant X3
protein sidekick-2-like, transcript variant X8
protein sidekick-2-like, transcript variant X1