Catharus ustulatus isolate bCatUst1 chromosome 27, bCatUst1.pri.v2, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Turdidae; Catharus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM020362.1.\nAssembly name: bCatUst1.pri.v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2020/12/22. The original whole-genome shotgun project has the\naccession WNMQ00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 06-AUG-2020\nAssembly Method :: FALCON v. DX 1.9.0; FALCON-Unzip v.\n 6.0.0.47841; purge_dups github v.\n purge_haplotig (bitbucket v1.0.3+\n 1.Nov.2018); Scaff10x v. 2; Bionano Solve\n v. 3.2.1_04122018; Salsa2 HiC v. 2.2;\n Arrow polishing and gap filling v.\n Smrtlink_6.0.0.47841; Longranger Align v.\n 2.2.2; freebayes v. 1.3.1; gEVAL manual\n curation v. 2020-08-06; VGP assembly\n pipeline v. 1.5\nAssembly Name :: bCatUst1.pri.v2\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 60.58x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Catharus ustulatus Annotation\n Release 101\nAnnotation Version :: 101\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
DNA polymerase beta, transcript variant X1
COORDINATES: polyA evidence [ECO:0006239]
DNA polymerase beta, transcript variant X2
voltage dependent anion channel 3, transcript variant X1
voltage dependent anion channel 3, transcript variant X2
voltage-dependent anion-selective channel protein 3 isoform X1
voltage-dependent anion-selective channel protein 3 isoform X2
inhibitor of nuclear factor kappa B kinase subunit beta
inhibitor of nuclear factor kappa-B kinase subunit beta
plasminogen activator, tissue type, transcript variant X1
plasminogen activator, tissue type, transcript variant X2
plasminogen activator, tissue type, transcript variant X4
plasminogen activator, tissue type, transcript variant X5
tissue-type plasminogen activator isoform X1
plasminogen activator, tissue type, transcript variant X3
tissue-type plasminogen activator isoform X2
tissue-type plasminogen activator isoform X3
tissue-type plasminogen activator isoform X4
adaptor related protein complex 3 subunit mu 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
protein phosphatase 1 regulatory subunit 3C-B-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
DNA replication complex GINS protein SLD5
zinc finger matrin-type 4, transcript variant X1
zinc finger matrin-type 4, transcript variant X3
zinc finger matrin-type 4, transcript variant X2
transcriptional and immune response regulator
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 85% coverage of the annotated genomic feature by RNAseq alignments
disintegrin and metalloproteinase domain-containing protein 32-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 54% coverage of the annotated genomic feature by RNAseq alignments
disintegrin and metalloproteinase domain-containing protein 9
pleckstrin homology domain containing A2, transcript variant X2
pleckstrin homology domain containing A2, transcript variant X1
pleckstrin homology domain containing A2, transcript variant X3
pleckstrin homology domain-containing family A member 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transforming acidic coiled-coil containing protein 1, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transforming acidic coiled-coil containing protein 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transforming acidic coiled-coil containing protein 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transforming acidic coiled-coil containing protein 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transforming acidic coiled-coil-containing protein 1 isoform X4
transforming acidic coiled-coil-containing protein 1 isoform X3
transforming acidic coiled-coil-containing protein 1 isoform X2
transforming acidic coiled-coil-containing protein 1 isoform X1
fibroblast growth factor receptor 1, transcript variant X1
fibroblast growth factor receptor 1, transcript variant X2
fibroblast growth factor receptor 1 isoform X1
fibroblast growth factor receptor 1 isoform X2
leucine zipper and EF-hand containing transmembrane protein 2
LETM1 domain-containing protein LETM2, mitochondrial
nuclear receptor binding SET domain protein 3, transcript variant X1
nuclear receptor binding SET domain protein 3, transcript variant X2
nuclear receptor binding SET domain protein 3, transcript variant X3
nuclear receptor binding SET domain protein 3, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
histone-lysine N-methyltransferase NSD3 isoform X1
histone-lysine N-methyltransferase NSD3 isoform X2
histone-lysine N-methyltransferase NSD3 isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
BAG cochaperone 4, transcript variant X2
BAG cochaperone 4, transcript variant X1
BAG family molecular chaperone regulator 4 isoform X1
BAG family molecular chaperone regulator 4 isoform X2
LSM1 homolog, mRNA degradation associated
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
U6 snRNA-associated Sm-like protein LSm1
steroidogenic acute regulatory protein, mitochondrial-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 67% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: steroidogenic acute regulatory protein, mitochondrial-like
set1/Ash2 histone methyltransferase complex subunit ASH2, transcript variant X2
set1/Ash2 histone methyltransferase complex subunit ASH2, transcript variant X3
set1/Ash2 histone methyltransferase complex subunit ASH2, transcript variant X1
set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X2
set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
histone-lysine N-methyltransferase NSD3-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
LOW QUALITY PROTEIN: histone-lysine N-methyltransferase NSD3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
uncharacterized LOC117007949, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
uncharacterized LOC117007949, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
BAG family molecular chaperone regulator 4-like
steroidogenic acute regulatory protein, mitochondrial-like, transcript variant X2
steroidogenic acute regulatory protein, mitochondrial-like, transcript variant X1
steroidogenic acute regulatory protein, mitochondrial-like isoform X1
steroidogenic acute regulatory protein, mitochondrial-like isoform X2
ASH2 like, histone lysine methyltransferase complex subunit, transcript variant X4
ASH2 like, histone lysine methyltransferase complex subunit, transcript variant X3
ASH2 like, histone lysine methyltransferase complex subunit, transcript variant X2
ASH2 like, histone lysine methyltransferase complex subunit, transcript variant X1
eukaryotic translation initiation factor 4E binding protein 1, transcript variant X2
eukaryotic translation initiation factor 4E binding protein 1, transcript variant X1
eukaryotic translation initiation factor 4E-binding protein 1 isoform X2
eukaryotic translation initiation factor 4E-binding protein 1 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 24 Proteins, and 36% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
BRF2 RNA polymerase III transcription initiation factor subunit, transcript variant X1
BRF2 RNA polymerase III transcription initiation factor subunit, transcript variant X2
transcription factor IIIB 50 kDa subunit isoform X1
transcription factor IIIB 50 kDa subunit isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 11 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
unc-5 netrin receptor D, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
unc-5 netrin receptor D, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
unc-5 netrin receptor D, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
unc-5 netrin receptor D, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF01210
V-type proton ATPase subunit B, brain isoform
leucine zipper tumor suppressor 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 15 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
leucine zipper tumor suppressor 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
leucine zipper putative tumor suppressor 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 ESTs, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
polysaccharide biosynthesis domain containing 1
nucleophosmin/nucleoplasmin 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
nucleophosmin/nucleoplasmin 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
dematin actin binding protein, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
dematin actin binding protein, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
dematin actin binding protein, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
dematin actin binding protein, transcript variant X2
actin filament-associated protein 1-like 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
FHF complex subunit HOOK interacting protein 2B
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
HR lysine demethylase and nuclear receptor corepressor
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 22 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
LOW QUALITY PROTEIN: leucine-rich repeat LGI family member 3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 77% coverage of the annotated genomic feature by RNAseq alignments
pulmonary surfactant-associated protein C
bone morphogenetic protein 1, transcript variant X1
bone morphogenetic protein 1, transcript variant X2
bone morphogenetic protein 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
phytanoyl-CoA 2-hydroxylase interacting protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
phytanoyl-CoA hydroxylase-interacting protein
RNA polymerase III subunit D, transcript variant X2
RNA polymerase III subunit D, transcript variant X1
DNA-directed RNA polymerase III subunit RPC4 isoform X1
DNA-directed RNA polymerase III subunit RPC4 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
solute carrier family 39 member 14, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
solute carrier family 39 member 14, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
uncharacterized LOC117007856, transcript variant X1
uncharacterized LOC117007856, transcript variant X2
uncharacterized LOC117007856, transcript variant X4
uncharacterized LOC117007856, transcript variant X3
uncharacterized protein LOC117007856 isoform X3
uncharacterized protein LOC117007856 isoform X2
uncharacterized protein LOC117007856 isoform X1
uncharacterized protein LOC117007856 isoform X4
protein phosphatase 3 catalytic subunit gamma, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
protein phosphatase 3 catalytic subunit gamma, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform isoform X1
serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform isoform X2
sorbin and SH3 domain containing 3, transcript variant X2
sorbin and SH3 domain containing 3, transcript variant X1
sorbin and SH3 domain containing 3, transcript variant X3
PDZ and LIM domain 2, transcript variant X3
PDZ and LIM domain 2, transcript variant X2
PDZ and LIM domain 2, transcript variant X1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 22% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein C8orf58 homolog
bridging integrator 3, transcript variant X1
bridging integrator 3, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
phosphatidylethanolamine binding protein 4, transcript variant X2
phosphatidylethanolamine binding protein 4, transcript variant X1
phosphatidylethanolamine-binding protein 4
Rho related BTB domain containing 2, transcript variant X1
rho-related BTB domain-containing protein 2 isoform X1
Rho related BTB domain containing 2, transcript variant X2
rho-related BTB domain-containing protein 2 isoform X2
tumor necrosis factor receptor superfamily member 10B-like
charged multivesicular body protein 7, transcript variant X1
charged multivesicular body protein 7, transcript variant X2
charged multivesicular body protein 7 isoform X1
charged multivesicular body protein 7 isoform X2
R3H and coiled-coil domain-containing protein 1
lysyl oxidase like 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
lysyl oxidase like 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
ectonucleoside triphosphate diphosphohydrolase 4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
disintegrin and metalloproteinase domain-containing protein 28
dedicator of cytokinesis 5, transcript variant X1
dedicator of cytokinesis 5, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
dedicator of cytokinesis protein 5 isoform X1
dedicator of cytokinesis protein 5 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
potassium channel tetramerization domain containing 9, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
potassium channel tetramerization domain containing 9, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
BTB/POZ domain-containing protein KCTD9 isoform X2
BTB/POZ domain-containing protein KCTD9 isoform X1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 88% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: cell division cycle-associated protein 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 5 ESTs, 38 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
protein phosphatase 2 regulatory subunit Balpha, transcript variant X2
serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X2
protein phosphatase 2 regulatory subunit Balpha, transcript variant X4
serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X4
protein phosphatase 2 regulatory subunit Balpha, transcript variant X3
serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X3
protein phosphatase 2 regulatory subunit Balpha, transcript variant X1
serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X1
protein phosphatase 2 regulatory subunit Balpha, transcript variant X5
serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X5
BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like
dihydropyrimidinase like 2, transcript variant X2
dihydropyrimidinase like 2, transcript variant X1
dihydropyrimidinase-related protein 2 isoform X1
dihydropyrimidinase like 2, transcript variant X3
dihydropyrimidinase-related protein 2 isoform X2
adrenoceptor alpha 1A, transcript variant X1
adrenoceptor alpha 1A, transcript variant X2
leucine rich repeat transmembrane neuronal 4, transcript variant X1
leucine rich repeat transmembrane neuronal 4, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
leucine-rich repeat transmembrane neuronal protein 4 isoform X1
leucine-rich repeat transmembrane neuronal protein 4 isoform X2
family with sequence similarity 136 member A
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
small nuclear ribonucleoprotein polypeptide G, transcript variant X2
small nuclear ribonucleoprotein polypeptide G, transcript variant X1
small nuclear ribonucleoprotein G isoform X1
small nuclear ribonucleoprotein G isoform X2
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA glycine (anticodon CCC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
TIA1 cytotoxic granule associated RNA binding protein, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
TIA1 cytotoxic granule associated RNA binding protein, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
mitochondrial ribosomal protein S24, transcript variant X3
28S ribosomal protein S24, mitochondrial isoform X3
mitochondrial ribosomal protein S24, transcript variant X2
mitochondrial ribosomal protein S24, transcript variant X1
28S ribosomal protein S24, mitochondrial isoform X1
28S ribosomal protein S24, mitochondrial isoform X2
NPC1 like intracellular cholesterol transporter 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
NPC1-like intracellular cholesterol transporter 1
DEAD-box helicase 56, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
probable ATP-dependent RNA helicase DDX56 isoform X1
DEAD-box helicase 56, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
probable ATP-dependent RNA helicase DDX56 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 19 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transmembrane emp24 domain-containing protein 4
interleukin-36 receptor antagonist protein-like, transcript variant X1
interleukin-36 receptor antagonist protein-like isoform X1
interleukin-36 receptor antagonist protein-like, transcript variant X2
interleukin-36 receptor antagonist protein-like isoform X2
interleukin-36 receptor antagonist protein-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98% coverage of the annotated genomic feature by RNAseq alignments
StAR related lipid transfer domain containing 7
stAR-related lipid transfer protein 7, mitochondrial
cytosolic iron-sulfur assembly component 1
probable cytosolic iron-sulfur protein assembly protein CIAO1
leucine-rich repeat extensin-like protein 5
small nuclear ribonucleoprotein U5 subunit 200, transcript variant X1
U5 small nuclear ribonucleoprotein 200 kDa helicase isoform X1
small nuclear ribonucleoprotein U5 subunit 200, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
U5 small nuclear ribonucleoprotein 200 kDa helicase isoform X3
small nuclear ribonucleoprotein U5 subunit 200, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
U5 small nuclear ribonucleoprotein 200 kDa helicase isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 11 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
ankyrin repeat domain 39, transcript variant X1
ankyrin repeat domain 39, transcript variant X2
ankyrin repeat domain-containing protein 39
collagen alpha-5(IV) chain-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
collagen alpha-5(IV) chain-like isoform X1
collagen alpha-5(IV) chain-like, transcript variant X2
cyclin and CBS domain divalent metal cation transport mediator 4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 81% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
lectin, mannose binding 2 like, transcript variant X1
lectin, mannose binding 2 like, transcript variant X2
uncharacterized LOC117007888, transcript variant X2
uncharacterized LOC117007888, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 78% coverage of the annotated genomic feature by RNAseq alignments
KAT8 regulatory NSL complex subunit 3, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
KAT8 regulatory NSL complex subunit 3, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
KAT8 regulatory NSL complex subunit 3, transcript variant X3
KAT8 regulatory NSL complex subunit 3, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
KAT8 regulatory NSL complex subunit 3, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
KAT8 regulatory NSL complex subunit 3, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
KAT8 regulatory NSL complex subunit 3 isoform X1
KAT8 regulatory NSL complex subunit 3 isoform X5
KAT8 regulatory NSL complex subunit 3 isoform X3
KAT8 regulatory NSL complex subunit 3 isoform X6
KAT8 regulatory NSL complex subunit 3 isoform X2
KAT8 regulatory NSL complex subunit 3 isoform X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 92% coverage of the annotated genomic feature by RNAseq alignments
AT-rich interaction domain 5A, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
AT-rich interaction domain 5A, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
AT-rich interaction domain 5A, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
AT-rich interaction domain 5A, transcript variant X1
AT-rich interactive domain-containing protein 5A isoform X2
AT-rich interactive domain-containing protein 5A isoform X1
non-SMC condensin I complex subunit H, transcript variant X2
non-SMC condensin I complex subunit H, transcript variant X1
tetraspanin-15-like, transcript variant X2
tetraspanin-15-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
tetraspanin-15-like, transcript variant X1
tetraspanin-15-like, transcript variant X4
tetraspanin-15-like, transcript variant X5
tetraspanin-15-like, transcript variant X6
solute carrier family 4 member 5, transcript variant X1
solute carrier family 4 member 5, transcript variant X2
solute carrier family 4 member 5, transcript variant X3
electrogenic sodium bicarbonate cotransporter 4 isoform X1
electrogenic sodium bicarbonate cotransporter 4 isoform X2
solute carrier family 4 member 5, transcript variant X4
electrogenic sodium bicarbonate cotransporter 4 isoform X3
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
wiskott-Aldrich syndrome protein homolog 1-like, transcript variant X1
wiskott-Aldrich syndrome protein homolog 1-like
wiskott-Aldrich syndrome protein homolog 1-like, transcript variant X2
wiskott-Aldrich syndrome protein homolog 1-like, transcript variant X3
wiskott-Aldrich syndrome protein homolog 1-like, transcript variant X4
wiskott-Aldrich syndrome protein homolog 1-like, transcript variant X6
wiskott-Aldrich syndrome protein homolog 1-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
wiskott-Aldrich syndrome protein homolog 1-like, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
deoxyguanosine kinase, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
deoxyguanosine kinase, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
deoxyguanosine kinase, mitochondrial isoform X2
deoxyguanosine kinase, mitochondrial isoform X1
actin gamma 2, smooth muscle, transcript variant X3
actin gamma 2, smooth muscle, transcript variant X2
actin gamma 2, smooth muscle, transcript variant X1
STAM binding protein, transcript variant X2
STAM binding protein, transcript variant X1
dual specificity phosphatase 11, transcript variant X2
dual specificity phosphatase 11, transcript variant X3
dual specificity phosphatase 11, transcript variant X1
RNA/RNP complex-1-interacting phosphatase isoform X2
RNA/RNP complex-1-interacting phosphatase isoform X3
RNA/RNP complex-1-interacting phosphatase isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 83% coverage of the annotated genomic feature by RNAseq alignments
Ras association domain family member 2, transcript variant X2
Ras association domain family member 2, transcript variant X1
ras association domain-containing protein 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transmembrane protein 230, transcript variant X3
transmembrane protein 230, transcript variant X2
transmembrane protein 230, transcript variant X1
proliferating cell nuclear antigen, transcript variant X2
proliferating cell nuclear antigen, transcript variant X1
proliferating cell nuclear antigen, transcript variant X3
Rho GTPase activating protein 25, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Rho GTPase activating protein 25, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
rho GTPase-activating protein 25 isoform X1
rho GTPase-activating protein 25 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 10 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 67% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 62% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 67% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 76% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 85% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
glutamine--fructose-6-phosphate transaminase 1
glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1
NFU1 iron-sulfur cluster scaffold homolog, mitochondrial
AP2 associated kinase 1, transcript variant X2
AP2 associated kinase 1, transcript variant X1
AP2-associated protein kinase 1 isoform X2
AP2-associated protein kinase 1 isoform X1
germ cell-less 1, spermatogenesis associated
folliculogenesis specific bHLH transcription factor
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 56% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 44 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
small nuclear ribonucleoprotein U4/U6.U5 subunit 27, transcript variant X1
small nuclear ribonucleoprotein U4/U6.U5 subunit 27, transcript variant X2
U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein isoform X1
U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein isoform X2
MAX dimerization protein 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
MAX dimerization protein 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
MAX dimerization protein 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pulmonary surfactant-associated protein B
vesicle-associated membrane protein 5-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
transcriptional activator protein Pur-beta
cytochrome c oxidase subunit 5B, mitochondrial
potassium voltage-gated channel interacting protein 3, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
potassium voltage-gated channel interacting protein 3, transcript variant X7
potassium voltage-gated channel interacting protein 3, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
potassium voltage-gated channel interacting protein 3, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 91 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
potassium voltage-gated channel interacting protein 3, transcript variant X1
potassium voltage-gated channel interacting protein 3, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
potassium voltage-gated channel interacting protein 3, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
potassium voltage-gated channel interacting protein 3, transcript variant X5
potassium voltage-gated channel interacting protein 3, transcript variant X6
fumarylacetoacetate hydrolase domain-containing protein 2-like
glycerol-3-phosphate acyltransferase 2, mitochondrial
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 70% coverage of the annotated genomic feature by RNAseq alignments
ELMO domain containing 3, transcript variant X1
ELMO domain containing 3, transcript variant X2
trans-golgi network protein 2, transcript variant X1
trans-golgi network protein 2, transcript variant X2
trans-Golgi network integral membrane protein 2 isoform X2
trans-Golgi network integral membrane protein 2 isoform X1
transcription factor 7 like 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 11 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcription factor 7 like 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 10 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcription factor 7-like 1 isoform X2
transcription factor 7-like 1 isoform X1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: macrophage-capping protein
AE binding protein 1, transcript variant X1
AE binding protein 1, transcript variant X2
AE binding protein 1, transcript variant X3
adipocyte enhancer-binding protein 1 isoform X1
adipocyte enhancer-binding protein 1 isoform X2
adipocyte enhancer-binding protein 1 isoform X3
DNA polymerase delta 2, accessory subunit, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
DNA polymerase delta 2, accessory subunit, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
DNA polymerase delta 2, accessory subunit, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
YKT6 v-SNARE homolog, transcript variant X1
YKT6 v-SNARE homolog, transcript variant X2
calcium/calmodulin dependent protein kinase II beta, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
calcium/calmodulin dependent protein kinase II beta, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
calcium/calmodulin dependent protein kinase II beta, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, 27 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
calcium/calmodulin dependent protein kinase II beta, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, 42 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
calcium/calmodulin dependent protein kinase II beta, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
calcium/calmodulin dependent protein kinase II beta, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 11 ESTs, 27 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
calcium/calmodulin dependent protein kinase II beta, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
calcium/calmodulin dependent protein kinase II beta, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
calcium/calmodulin dependent protein kinase II beta, transcript variant X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
calcium/calmodulin dependent protein kinase II beta, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
calcium/calmodulin-dependent protein kinase type II subunit beta isoform X8
calcium/calmodulin-dependent protein kinase type II subunit beta isoform X6
calcium/calmodulin-dependent protein kinase type II subunit beta isoform X7
calcium/calmodulin-dependent protein kinase type II subunit beta isoform X5
calcium/calmodulin-dependent protein kinase type II subunit beta isoform X4
calcium/calmodulin-dependent protein kinase type II subunit beta isoform X2
calcium/calmodulin-dependent protein kinase type II subunit beta isoform X3
calcium/calmodulin-dependent protein kinase type II subunit beta isoform X1
calcium/calmodulin-dependent protein kinase type II subunit beta isoform X10
calcium/calmodulin-dependent protein kinase type II subunit beta isoform X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
sodium-dependent phosphate transporter 1-like
cytoskeleton-associated protein 2-like, transcript variant X4
cytoskeleton-associated protein 2-like isoform X4
cytoskeleton-associated protein 2-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
cytoskeleton-associated protein 2-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
cytoskeleton-associated protein 2-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
cytoskeleton-associated protein 2-like isoform X3
cytoskeleton-associated protein 2-like isoform X2
cytoskeleton-associated protein 2-like isoform X1
interleukin-1 receptor antagonist protein-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 39% coverage of the annotated genomic feature by RNAseq alignments
oxoglutarate dehydrogenase, transcript variant X3
oxoglutarate dehydrogenase, transcript variant X5
oxoglutarate dehydrogenase, transcript variant X1
oxoglutarate dehydrogenase, transcript variant X4
oxoglutarate dehydrogenase, transcript variant X2
2-oxoglutarate dehydrogenase, mitochondrial isoform X2
2-oxoglutarate dehydrogenase, mitochondrial isoform X4
2-oxoglutarate dehydrogenase, mitochondrial isoform X1
2-oxoglutarate dehydrogenase, mitochondrial isoform X3
zinc finger MIZ domain-containing protein 2-like, transcript variant X1
zinc finger MIZ domain-containing protein 2-like, transcript variant X2
zinc finger MIZ domain-containing protein 2-like, transcript variant X4
zinc finger MIZ domain-containing protein 2-like, transcript variant X3
zinc finger MIZ domain-containing protein 2-like isoform X1
zinc finger MIZ domain-containing protein 2-like isoform X2
zinc finger MIZ domain-containing protein 2-like isoform X4
zinc finger MIZ domain-containing protein 2-like isoform X3
serine/threonine-protein kinase 17B-like
uncharacterized LOC117007884, transcript variant X1
uncharacterized protein LOC117007884 isoform X1
uncharacterized LOC117007884, transcript variant X2
uncharacterized protein LOC117007884 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 29% coverage of the annotated genomic feature by RNAseq alignments
2-oxoglutarate dehydrogenase, mitochondrial-like, transcript variant X3
2-oxoglutarate dehydrogenase, mitochondrial-like, transcript variant X5
2-oxoglutarate dehydrogenase, mitochondrial-like, transcript variant X1
2-oxoglutarate dehydrogenase, mitochondrial-like, transcript variant X4
2-oxoglutarate dehydrogenase, mitochondrial-like, transcript variant X2
2-oxoglutarate dehydrogenase, mitochondrial-like isoform X2
2-oxoglutarate dehydrogenase, mitochondrial-like isoform X4
2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1
2-oxoglutarate dehydrogenase, mitochondrial-like isoform X3
zinc finger MIZ domain-containing protein 2-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 102 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
U1 small nuclear ribonucleoprotein A-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 28% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein A-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 133 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
serine/threonine-protein kinase pim-1-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: serine/threonine-protein kinase pim-1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 55% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 54 Proteins, and 66% coverage of the annotated genomic feature by RNAseq alignments