Candidatus Paracaedibacter acanthamoebae isolate PRA3 plasmid unnamed, complete sequence.
Candidatus Paracaedibacter acanthamoebae
Bacteria; Pseudomonadota; Alphaproteobacteria; Holosporales; Candidatus Paracaedibacteraceae; Candidatus Paracaedibacter.
Comparative genomic insights into amoeba endosymbionts belonging to the families of Holosporaceae and Candidatus Midichloriaceae within Rickettsiales
Submitted (14-JUL-2014) Biology, University of Virginia, 485 McCormick Road, Charlottesville, VA 22904, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP008942.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3; Celera Assembler v. 8.2\nGenome Coverage :: 130x\nSequencing Technology :: 454 GS FLX Titanium; PacBio SMRT\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 01:10:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,319\nCDSs (total) :: 2,267\nGenes (coding) :: 2,199\nCDSs (with protein) :: 2,199\nGenes (RNA) :: 52\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 3\nPseudo Genes (total) :: 68\nCDSs (without protein) :: 68\nPseudo Genes (ambiguous residues) :: 0 of 68\nPseudo Genes (frameshifted) :: 21 of 68\nPseudo Genes (incomplete) :: 49 of 68\nPseudo Genes (internal stop) :: 14 of 68\nPseudo Genes (multiple problems) :: 14 of 68\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011214467.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
virulence protein RhuM/Fic/DOC family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013450000.1
COORDINATES: similar to AA sequence:RefSeq:WP_014392527.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF022150.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010304023.1
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF020037.2
PAS domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF019474.2
GO:0016787 - hydrolase activity [Evidence IEA]
alpha/beta hydrolase fold domain-containing protein
COORDINATES: protein motif:HMM:NF017353.2
COORDINATES: similar to AA sequence:RefSeq:WP_010297522.1
COORDINATES: similar to AA sequence:RefSeq:WP_013897920.1
COORDINATES: protein motif:HMM:NF021082.2