Candidatus Paracaedibacter acanthamoebae isolate PRA3 plasmid unnamed, complete sequence.
type: Entry
definition: Candidatus Paracaedibacter acanthamoebae isolate PRA3 plasmid unnamed, complete sequence.
sequence version: NZ_CP008942.1
sequence date: 2022-12-28
sequence: sequence
division: CON
label: NZ_CP008942.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02911856
keyword: RefSeq
source: Candidatus Paracaedibacter acanthamoebae
organism: Candidatus Paracaedibacter acanthamoebae
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Holosporales; Candidatus Paracaedibacteraceae; Candidatus Paracaedibacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP008942.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3; Celera Assembler v. 8.2\nGenome Coverage :: 130x\nSequencing Technology :: 454 GS FLX Titanium; PacBio SMRT\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 01:10:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,319\nCDSs (total) :: 2,267\nGenes (coding) :: 2,199\nCDSs (with protein) :: 2,199\nGenes (RNA) :: 52\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 3\nPseudo Genes (total) :: 68\nCDSs (without protein) :: 68\nPseudo Genes (ambiguous residues) :: 0 of 68\nPseudo Genes (frameshifted) :: 21 of 68\nPseudo Genes (incomplete) :: 49 of 68\nPseudo Genes (internal stop) :: 14 of 68\nPseudo Genes (multiple problems) :: 14 of 68\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 15074
topology: circular
so has quality: SO_0000988
location: 1..15074
location: region:1-15074:1
RO_0002162: 91604

NZ_CP008942
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02911856
type: BioSample
SIO_000068: biosample

1
title: Comparative genomic insights into amoeba endosymbionts belonging to the families of Holosporaceae and Candidatus Midichloriaceae within Rickettsiales
author: Wang, Z.
author: Wu, M.
journal: Unpublished

2
title: Direct Submission
author: Wu, M.
journal: Submitted (14-JUL-2014) Biology, University of Virginia, 485 McCormick Road, Charlottesville, VA 22904, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15074:1
position: 15074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15074:1:source
so part of: sequence
organism: Candidatus Paracaedibacter acanthamoebae
mol type: genomic DNA
isolate: PRA3
host: Acanthamoeba
plasmid: unnamed
collection date: 2009-09-30

91604
type: Taxonomy
SIO_000068: taxonomy

ID47_RS11320
type: Gene
subclass of: SO_0000704
RO_0002162: 91604
locus tag: ID47_RS11320
old locus tag: ID47_11970
so part of: sequence
location: join(14612..15074,1..530)
location: region:1-15074:1
so has part: feature:14612-15074:1:exon
so has part: feature:1-530:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:14612-15074:1:exon

position:14612:1
position: 14612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-530:1:exon

position:530:1
position: 530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ID47_RS11320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91604
locus tag: ID47_RS11320
old locus tag: ID47_11970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011214467.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence protein RhuM/Fic/DOC family protein
translation: MISSQQDFVNFSSSDNLISLSVHLDTQAETVWLNLNQLSELFDRDKSVISRHLKKIFETAELEKDSVVAFFATTAADGKTYTVEYFNLDVILSVGYRVNSKRGMEFRRWASSILKEYLIKGYAINQERLSTIGMQEISRSLDILKHSLLTHGSMDDIGHAALDIIRSYSKSWLLLNAFDENRLSYQSKMQPYEIKFTTEFCLTNIAQLKQELIDQKEASSLFGIQREHGLDQILGSIHQTFSDQFLYPSVYERAAHLFYFTLKDHPFVDGNKRIGSFLLLLYLAAYNIQLFHITNESLVALALLVAQSNPNDKDIIIKLILNLITKDELC
SIO_010081: ID47_RS11320
subclass of: SO_0000673
so part of: ID47_RS11320
location: join(14612..15074,1..530)
location: region:1-15074:1
so has part: feature:14612-15074:1:exon
so has part: feature:1-530:1:exon

WP_041187772.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14612-15074:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-530:1:exon

ID47_RS11325
type: Gene
subclass of: SO_0000704
RO_0002162: 91604
locus tag: ID47_RS11325
old locus tag: ID47_11975
so part of: sequence
location: 524..1120
location: region:524-1120:1
so has part: feature:524-1120:1:exon
subclass of: SO_0000010

position:524:1
position: 524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1120:1
position: 1120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:524-1120:1:exon

ID47_RS11325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91604
locus tag: ID47_RS11325
old locus tag: ID47_11975
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013450000.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MLIGYMRVSTDKDRQTTDLQKDALLKAGVDERHLFMDRASGVKDDRQGLTQALTYMKKGDCLVVWKLDRLGRSLPHLLEIISDLKQKGISFKSLTENIDTTTPQGELFFHVFGALAQYERSLIRERIMAGLEAAKTRGKKGGRPRKIDDEKLQAILNSLKSGQSKASVCRTFQIPRTTLYDYLERAENTRAEPPISLF
SIO_010081: ID47_RS11325
subclass of: SO_0000673
so part of: ID47_RS11325
location: 524..1120
location: region:524-1120:1
so has part: feature:524-1120:1:exon

WP_041187773.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:524-1120:1:exon

ID47_RS11330
type: Gene
subclass of: SO_0000704
RO_0002162: 91604
locus tag: ID47_RS11330
old locus tag: ID47_11980
so part of: sequence
location: 1234..2511
location: region:1234-2511:1
so has part: feature:1234-2511:1:exon
subclass of: SO_0000010

position:1234:1
position: 1234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2511:1
position: 2511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1234-2511:1:exon

ID47_RS11330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91604
locus tag: ID47_RS11330
old locus tag: ID47_11980
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014392527.1
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MNLLSGLKREQKEAIGLLQVGTFLEYFDLMLYVHMAVILNELFFPKTDPHTSALLSAFAFCSTYVLRPLGALIFGYIGDNIGRKSTVIITTMMMSVSCIIMATLPTYAQIGITAAWAVTLCRVIQGISSMGEIIGAEIYLTEITKPPMSYPIVSLIGCSSRLGTMVALGVATLVLTCGIEWRTAFWVGAAIAVIGSVARTRLRETPEFLKIKKLGKLAKKESKRASLKTTVAYFFISSGPPACLYFSYMYFANILKAQGLSGEFVVKQNFMLSVVEFIAILLITCLSVKFNPLKILKIKSSAYLIFILLFPLVMSNSEHYPLIFSIQCISVMLTLSGVPAVPILIKHFPVMSRFTYVSFIYALSRAIIYVVTSFGLVYLTDWFGYIGVSLILLPIAGGFLWGICHFESLENLYKNKLDNPILATP
SIO_010081: ID47_RS11330
subclass of: SO_0000673
so part of: ID47_RS11330
location: 1234..2511
location: region:1234-2511:1
so has part: feature:1234-2511:1:exon

WP_041187774.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1234-2511:1:exon

ID47_RS11335
type: Gene
subclass of: SO_0000704
RO_0002162: 91604
locus tag: ID47_RS11335
old locus tag: ID47_11985
so part of: sequence
location: complement(2898..3305)
location: region:2898-3305:-1
so has part: feature:2898-3305:-1:exon
subclass of: SO_0000010

position:2898:-1
position: 2898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3305:-1
position: 3305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2898-3305:-1:exon

ID47_RS11335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91604
locus tag: ID47_RS11335
old locus tag: ID47_11985
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKMIGMLVATCGLSLGYAQDIEENIIIHSIWTTPEATTIDFNIKGKSIESKNLIEGDKKFLNAFINGYKGLRGNKENMPGDLAFKNVRGKSFFGGKLLNIAFQETPNIIVDTPIYCASSLFYLEKGAIFTNPLF
SIO_010081: ID47_RS11335
subclass of: SO_0000673
so part of: ID47_RS11335
location: complement(2898..3305)
location: region:2898-3305:-1
so has part: feature:2898-3305:-1:exon

WP_041187775.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2898-3305:-1:exon

ID47_RS12690
type: Gene
subclass of: SO_0000704
RO_0002162: 91604
locus tag: ID47_RS12690
so part of: sequence
location: complement(3620..3784)
location: region:3620-3784:-1
so has part: feature:3620-3784:-1:exon
subclass of: SO_0000010

position:3620:-1
position: 3620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3784:-1
position: 3784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3620-3784:-1:exon

ID47_RS12690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91604
locus tag: ID47_RS12690
inference: COORDINATES: protein motif:HMM:NF022150.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: KGG domain-containing protein
translation: MPTNKRDQDSRKGQASKSETKGKQGFASMPKEQVREIAAEGGRHSHGQKSTKER
SIO_010081: ID47_RS12690
subclass of: SO_0000673
so part of: ID47_RS12690
location: complement(3620..3784)
location: region:3620-3784:-1
so has part: feature:3620-3784:-1:exon

WP_084676046.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3620-3784:-1:exon

ID47_RS11340
type: Gene
subclass of: SO_0000704
RO_0002162: 91604
locus tag: ID47_RS11340
old locus tag: ID47_11995
so part of: sequence
location: complement(4097..4345)
location: region:4097-4345:-1
so has part: feature:4097-4345:-1:exon
subclass of: SO_0000010

position:4097:-1
position: 4097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4345:-1
position: 4345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4097-4345:-1:exon

ID47_RS11340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91604
locus tag: ID47_RS11340
old locus tag: ID47_11995
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: ribbon-helix-helix protein, CopG family
translation: MAKSKFEITKDLVRLEDEPIVISAPLAITKKEPAKLVKTKERLSADIDSDIKHRLQILAIKQRTNLTTLIEQALLEYIEREK
SIO_010081: ID47_RS11340
subclass of: SO_0000673
so part of: ID47_RS11340
location: complement(4097..4345)
location: region:4097-4345:-1
so has part: feature:4097-4345:-1:exon

WP_041187776.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4097-4345:-1:exon

ID47_RS11345
type: Gene
subclass of: SO_0000704
RO_0002162: 91604
locus tag: ID47_RS11345
old locus tag: ID47_12000
so part of: sequence
location: complement(4347..4991)
location: region:4347-4991:-1
so has part: feature:4347-4991:-1:exon
subclass of: SO_0000010

position:4347:-1
position: 4347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4991:-1
position: 4991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4347-4991:-1:exon

ID47_RS11345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91604
locus tag: ID47_RS11345
old locus tag: ID47_12000
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010304023.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKILTIANRKGGAGKSTCAANLAVAASEAGKKTILIDLDPQKTLEGWWSRREAEDIGLVDCISSELRLTLEKLEAAGFDLCIIDTPGDASDNAVAGISVADLVLIPSKPTAPDLSAIGRTINMVEKYKKRFIFLVTQGASRTKATFQASSVLSTFGPVAPAIFSNRLSYAAAMGTGGSAGAIDKNAMEEISSVWEFIKSRLFESEKIQKTKVVA
SIO_010081: ID47_RS11345
subclass of: SO_0000673
so part of: ID47_RS11345
location: complement(4347..4991)
location: region:4347-4991:-1
so has part: feature:4347-4991:-1:exon

WP_041187777.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4347-4991:-1:exon

ID47_RS11350
type: Gene
subclass of: SO_0000704
RO_0002162: 91604
locus tag: ID47_RS11350
old locus tag: ID47_12005
so part of: sequence
location: 5292..5537
location: region:5292-5537:1
so has part: feature:5292-5537:1:exon
subclass of: SO_0000010

position:5292:1
position: 5292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5537:1
position: 5537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5292-5537:1:exon

ID47_RS11350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91604
locus tag: ID47_RS11350
old locus tag: ID47_12005
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTANEDKIHTNRINVVVPLEDSIRIERESDKRGINRTQFIKEAIREKLQREEHFSDRFFTEIESIKKEVLSLKDLLIILCK
SIO_010081: ID47_RS11350
subclass of: SO_0000673
so part of: ID47_RS11350
location: 5292..5537
location: region:5292-5537:1
so has part: feature:5292-5537:1:exon

WP_041187778.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5292-5537:1:exon

ID47_RS12135
type: Gene
subclass of: SO_0000704
RO_0002162: 91604
locus tag: ID47_RS12135
so part of: sequence
location: 5736..6992
location: region:5736-6992:1
so has part: feature:5736-6992:1:exon
subclass of: SO_0000010

position:5736:1
position: 5736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6992:1
position: 6992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5736-6992:1:exon

ID47_RS12135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91604
locus tag: ID47_RS12135
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVSSRLCSSPHYVFVDSQLVRSIGMTAASLLSRIHYWLQKDKGGIIHDEVKFVYNTALEWSRQLGVSSRQVERAIAKLRNLGLLRIEKLARHKSIRTNHYAINYEALQGLISLKKAPKMSESSRQNVGMYITKNTDNSKDINNNKSKTPSDHSAPQVQQVLEIKNKRTEENSKTATVPNTTVQDMVTYWQQLFPHSTVKLNRELSQYLHAAFKLRFNSDMNLWRHYCQTLESSPYLTSKDFNLTLGWVIKFKTIDRIKAGELGVKAIAIPGETQRLEAEIKQEIACLDESELCKSMRIKLLKLYGVHAYNAWIRKARLLEEGKRISYQAETDYGQSFIENHFGRLIVSCPPETPVFEEKRKSEFAKGTLLEKIDHIDEAEKWLHIHRIPLEPLGLQHYMEQFHCLSFSLEKGGMITVI
SIO_010081: ID47_RS12135
subclass of: SO_0000673
so part of: ID47_RS12135
location: 5736..6992
location: region:5736-6992:1
so has part: feature:5736-6992:1:exon

WP_051908913.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5736-6992:1:exon

ID47_RS11360
type: Gene
subclass of: SO_0000704
RO_0002162: 91604
locus tag: ID47_RS11360
old locus tag: ID47_12015
so part of: sequence
location: complement(6998..7462)
location: region:6998-7462:-1
so has part: feature:6998-7462:-1:exon
subclass of: SO_0000010

position:6998:-1
position: 6998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7462:-1
position: 7462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6998-7462:-1:exon

ID47_RS11360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91604
locus tag: ID47_RS11360
old locus tag: ID47_12015
inference: COORDINATES: protein motif:HMM:NF012301.2
GO process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: response regulator
translation: MEQLSDIQVIYVEDDEVDRHIFELVLNKILVNSRVTFIHNGEDFLDFYYRRNSYKNRELCQGKIIIFLDINMPRLSGLDVLKKLSDAQINGIEGLSPPIIMFSASQRDVDISESKRLGATEYVVKPFSYQEMKASLSALFSRYLQSGKLKETSI
SIO_010081: ID47_RS11360
subclass of: SO_0000673
so part of: ID47_RS11360
location: complement(6998..7462)
location: region:6998-7462:-1
so has part: feature:6998-7462:-1:exon

WP_041187779.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6998-7462:-1:exon

ID47_RS11365
type: Gene
subclass of: SO_0000704
RO_0002162: 91604
locus tag: ID47_RS11365
old locus tag: ID47_12020
so part of: sequence
location: complement(7740..8951)
location: region:7740-8951:-1
so has part: feature:7740-8951:-1:exon
subclass of: SO_0000010

position:7740:-1
position: 7740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8951:-1
position: 8951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7740-8951:-1:exon

ID47_RS11365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91604
locus tag: ID47_RS11365
old locus tag: ID47_12020
inference: COORDINATES: protein motif:HMM:NF020037.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PAS domain-containing sensor histidine kinase
translation: MKKCIDLNAPLEDHSPQDGAVLELFAPYAYALSKLMAEKDGAKNAEAYSREYVLSFIKKLRVNVGFLDKDGNFIAASPPLEKSLRSSYGKTYITGVNIRELAQVFPPEVEEALKKNLAGVSIRYPEVAVQITSNQTTWVTWESFPWFGADEEVMGIFFFCKDITKEKELQLDLSKLYSRTELLSRFSLIFSHDLIQPLRQISTYVSLLELELEDTLSNKPGVKDTLDALNRCISKAKEICKGIVLYCKNGDLTVNREPVTLSEVMDMTLEFCAERPDIIIENFTPEDLILDVNKACLLQLFQNLLDNAIKHSTSTPIEITFSGKYLDSDYYEFSLHNNGWCGNTLKQKNVFNAFYSNYADGAGLGLMICKKIVDAYGGKINFISTPEDGTRIDFSLPLFNEAK
SIO_010081: ID47_RS11365
subclass of: SO_0000673
so part of: ID47_RS11365
location: complement(7740..8951)
location: region:7740-8951:-1
so has part: feature:7740-8951:-1:exon

WP_041187780.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7740-8951:-1:exon

ID47_RS11370
type: Gene
subclass of: SO_0000704
RO_0002162: 91604
locus tag: ID47_RS11370
old locus tag: ID47_12025
so part of: sequence
location: 9321..10208
location: region:9321-10208:1
so has part: feature:9321-10208:1:exon
subclass of: SO_0000010

position:9321:1
position: 9321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10208:1
position: 10208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9321-10208:1:exon

ID47_RS11370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91604
locus tag: ID47_RS11370
old locus tag: ID47_12025
inference: COORDINATES: protein motif:HMM:NF019474.2
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: alpha/beta hydrolase fold domain-containing protein
translation: MAKKIKRPVAYLRFIDKTLMLWNRFIRLPAGFVVYKYCIQNVTVESVQLKNLSSDTKIIYVHGGAFIIGLNNIYRKFACLLSRKCQADVILIDYNLAPTSSFPRAMQQVLVVYQEILKTTPPSQIIIAGDSAGGNLAMAMLLLAKESSIPMPACAVILSGWLDLTLENAAKKAEDDLLITMKHLIEVRDSYLQYTVAPNHYLASPIYGNIKGLPPLFMHAGEEEILLNDTVSFVKKAESENIKVQFEIGQDMLHVHPILFPSDNCSLDVINKIATFISHNISSQKKAPLEGKIKS
SIO_010081: ID47_RS11370
subclass of: SO_0000673
so part of: ID47_RS11370
location: 9321..10208
location: region:9321-10208:1
so has part: feature:9321-10208:1:exon

WP_198022387.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9321-10208:1:exon

ID47_RS12140
type: Gene
subclass of: SO_0000704
RO_0002162: 91604
locus tag: ID47_RS12140
so part of: sequence
location: 10576..11268
location: region:10576-11268:1
so has part: feature:10576-11268:1:exon
subclass of: SO_0000010

position:10576:1
position: 10576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11268:1
position: 11268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10576-11268:1:exon

ID47_RS12140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91604
locus tag: ID47_RS12140
inference: COORDINATES: protein motif:HMM:NF012301.2
GO process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: response regulator
translation: MIDNIDKYVAKKLKYYRVKFDWPLKKLADDLGVSLQQMHRYEQGTNKISAGLLYRLSKIFKIDITCFFDNFEESAIDTKDDSYKVLLIEDNPDDEYFFRKCIAEFDEHLDIYVLRDGTEVLNYFRELQDTSVRLFSQPDIIFMDLNIPSANGFELLNDLKKRPVLNGVPIIVLTSSVNEEDASKSYLLHANGFIRKSFTFKEYSEQLNIALNYWIKAAGLPHHEQMKELA
SIO_010081: ID47_RS12140
subclass of: SO_0000673
so part of: ID47_RS12140
location: 10576..11268
location: region:10576-11268:1
so has part: feature:10576-11268:1:exon

WP_051908914.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10576-11268:1:exon

ID47_RS11385
type: Gene
subclass of: SO_0000704
RO_0002162: 91604
locus tag: ID47_RS11385
old locus tag: ID47_12040
so part of: sequence
location: complement(11392..11793)
location: region:11392-11793:-1
so has part: feature:11392-11793:-1:exon
subclass of: SO_0000010

position:11392:-1
position: 11392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11793:-1
position: 11793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11392-11793:-1:exon

ID47_RS11385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91604
locus tag: ID47_RS11385
old locus tag: ID47_12040
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSLLTPLIPHVLGRVLNTGTPSLNLGKRVLGGILLISGLGLGAFILYKFLIPLFGDLISGLIMSGIFLGTGGILWCSKPSTAPFSPQEILSKAENVVENLHLPANFEKHTGKFLGTALGAGIILAYLLSHKKE
SIO_010081: ID47_RS11385
subclass of: SO_0000673
so part of: ID47_RS11385
location: complement(11392..11793)
location: region:11392-11793:-1
so has part: feature:11392-11793:-1:exon

WP_041187782.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11392-11793:-1:exon

ID47_RS11390
type: Gene
subclass of: SO_0000704
RO_0002162: 91604
locus tag: ID47_RS11390
so part of: sequence
location: complement(11790..12155)
location: region:11790-12155:-1
so has part: feature:11790-12155:-1:exon
subclass of: SO_0000010

position:11790:-1
position: 11790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12155:-1
position: 12155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11790-12155:-1:exon

ID47_RS11390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91604
locus tag: ID47_RS11390
inference: COORDINATES: protein motif:HMM:NF017353.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CsbD family protein
translation: MNTYTLKGNLTEFKGAIQKKWGKITDQDLESIKGEKDKLIGLIQKKYGEGKESIEEALSAIMKNSENTLEDTFATLKEKKDEAVDYTQQLTSILQEKIKKNPLPSVFISLGVGFLIGKLIK
SIO_010081: ID47_RS11390
subclass of: SO_0000673
so part of: ID47_RS11390
location: complement(11790..12155)
location: region:11790-12155:-1
so has part: feature:11790-12155:-1:exon

WP_041187783.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11790-12155:-1:exon

ID47_RS11395
type: Gene
subclass of: SO_0000704
RO_0002162: 91604
locus tag: ID47_RS11395
old locus tag: ID47_12050
so part of: sequence
location: complement(12355..12804)
location: region:12355-12804:-1
so has part: feature:12355-12804:-1:exon
subclass of: SO_0000010

position:12355:-1
position: 12355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12804:-1
position: 12804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12355-12804:-1:exon

ID47_RS11395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91604
locus tag: ID47_RS11395
old locus tag: ID47_12050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010297522.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PA2169 family four-helix-bundle protein
translation: MTVGSISVLNKLIRLTKDTEEGYLTAAENVDDSYLQKLLKERAENCHIAAMDLQRKVKEMDGVPTENGTFRGTMHRSWVNIKGTLTGKDELTILDECEKGEAMIEEAYEKFLKADISEEIRPLIQQQYESIVNDHNIMRDLMDKYGANQ
SIO_010081: ID47_RS11395
subclass of: SO_0000673
so part of: ID47_RS11395
location: complement(12355..12804)
location: region:12355-12804:-1
so has part: feature:12355-12804:-1:exon

WP_041187784.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12355-12804:-1:exon

ID47_RS11400
type: Gene
subclass of: SO_0000704
RO_0002162: 91604
locus tag: ID47_RS11400
old locus tag: ID47_12055
so part of: sequence
location: complement(12918..13130)
location: region:12918-13130:-1
so has part: feature:12918-13130:-1:exon
subclass of: SO_0000010

position:12918:-1
position: 12918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13130:-1
position: 13130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12918-13130:-1:exon

ID47_RS11400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91604
locus tag: ID47_RS11400
old locus tag: ID47_12055
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013897920.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF378 domain-containing protein
translation: MVQTKHTLTVICEIILIIGALNWGLVGAFDFNLVAYIFSPYPLVEKAVYDGVGIAGLYILYRIIIRMVRA
SIO_010081: ID47_RS11400
subclass of: SO_0000673
so part of: ID47_RS11400
location: complement(12918..13130)
location: region:12918-13130:-1
so has part: feature:12918-13130:-1:exon

WP_051908915.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12918-13130:-1:exon

ID47_RS11405
type: Gene
subclass of: SO_0000704
RO_0002162: 91604
locus tag: ID47_RS11405
old locus tag: ID47_12060
so part of: sequence
location: complement(13185..13514)
location: region:13185-13514:-1
so has part: feature:13185-13514:-1:exon
subclass of: SO_0000010

position:13185:-1
position: 13185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13514:-1
position: 13514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13185-13514:-1:exon

ID47_RS11405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91604
locus tag: ID47_RS11405
old locus tag: ID47_12060
inference: COORDINATES: protein motif:HMM:NF021082.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2383 domain-containing protein
translation: MTSDLMSILGELIQIAQKNEDGYRAAADRVQDSVLKQALQKRAEYCHNAVTDLQGKVKQIIHARGKGGSLVGGMPCDQASINEMLIGKENLTIIEEWDTSEYTHKIASC
SIO_010081: ID47_RS11405
subclass of: SO_0000673
so part of: ID47_RS11405
location: complement(13185..13514)
location: region:13185-13514:-1
so has part: feature:13185-13514:-1:exon

WP_041187785.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13185-13514:-1:exon

ID47_RS11410
type: Gene
subclass of: SO_0000704
RO_0002162: 91604
locus tag: ID47_RS11410
old locus tag: ID47_12065
so part of: sequence
location: complement(13751..14230)
location: region:13751-14230:-1
so has part: feature:13751-14230:-1:exon
subclass of: SO_0000010

position:13751:-1
position: 13751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14230:-1
position: 14230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13751-14230:-1:exon

ID47_RS11410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 91604
locus tag: ID47_RS11410
old locus tag: ID47_12065
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHNILNMNTITNQEEKEKSFEQYKMINESIHQINMMRETSNPFWLTANGLTISGISYLNTIGEVTEMNKETLLISLILVGYLFCVVWLNYLNSIRLSLKTRYDILLEIEHYLPIKFAQRVYGNLNKKEGKWTLTFSELLVPCIFIMSYSFFLLRLILKI
SIO_010081: ID47_RS11410
subclass of: SO_0000673
so part of: ID47_RS11410
location: complement(13751..14230)
location: region:13751-14230:-1
so has part: feature:13751-14230:-1:exon

WP_041187786.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13751-14230:-1:exon