Grus americana isolate bGruAme1 chromosome 39, bGruAme1.mat, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Gruidae; Grus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM054343.1.\nAssembly name: bGruAme1.mat\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2023/02/24. The original whole-genome shotgun project has the\naccession JARBUS000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 16-FEB-2022\nAssembly Method :: TrioCanu v. 2.1; purge_dups v. 1.0.0;\n Scaff 10x v. 4.1.0; salsa v. 2.2; Arrow\n polishing & gap filling v. 2.0.2; Merfin\n polishing v. 1.0; Freebayes polishing v.\n 1.3.1\nAssembly Name :: bGruAme1.mat\nDiploid :: Maternal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 232.6x\nSequencing Technology :: PacBio Sequel II CLR; 10X Gemonics linked\n reads; Arima Hi-C v1; Bionano DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_028858705.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/31/2023\n##Genome-Annotation-Data-END##
olfactory receptor 10AG1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
olfactory receptor 14A16-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 56 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 66 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
TLC domain containing 3B; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
aldolase, fructose-bisphosphate A; Derived by automated computational analysis using gene prediction method: Gnomon.
aldolase, fructose-bisphosphate A, transcript variant X2
COORDINATES: polyA evidence [ECO:0006239]
aldolase, fructose-bisphosphate A, transcript variant X1
fructose-bisphosphate aldolase A isoform X1
aldolase, fructose-bisphosphate A, transcript variant X3
aldolase, fructose-bisphosphate A, transcript variant X4
aldolase, fructose-bisphosphate A, transcript variant X5
fructose-bisphosphate aldolase A isoform X2
protein phosphatase 4 catalytic subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
protein phosphatase 4 catalytic subunit, transcript variant X1
protein phosphatase 4 catalytic subunit, transcript variant X2
serine/threonine-protein phosphatase 4 catalytic subunit
Snf2 related CREBBP activator protein; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
E3 ubiquitin-protein ligase BRE1B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
RUS family member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
sodium/glucose cotransporter 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
sodium/glucose cotransporter 2-like, transcript variant X8
sodium/glucose cotransporter 2-like, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
sodium/glucose cotransporter 2-like, transcript variant X6
sodium/glucose cotransporter 2-like, transcript variant X3
sodium/glucose cotransporter 2-like, transcript variant X5
sodium/glucose cotransporter 2-like, transcript variant X4
sodium/glucose cotransporter 2-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 49 Proteins
sodium/glucose cotransporter 2-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
sodium/glucose cotransporter 2-like isoform X8
sodium/glucose cotransporter 2-like isoform X7
sodium/glucose cotransporter 2-like isoform X6
sodium/glucose cotransporter 2-like isoform X3
sodium/glucose cotransporter 2-like isoform X5
sodium/glucose cotransporter 2-like isoform X4
sodium/glucose cotransporter 2-like isoform X2
sodium/glucose cotransporter 2-like isoform X1
uncharacterized LOC129199031; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129199031, transcript variant X3
uncharacterized LOC129199031, transcript variant X1
uncharacterized LOC129199031, transcript variant X4
uncharacterized LOC129199031, transcript variant X2
apoptosis-associated speck-like protein containing a CARD; Derived by automated computational analysis using gene prediction method: Gnomon.
apoptosis-associated speck-like protein containing a CARD, transcript variant X1
apoptosis-associated speck-like protein containing a CARD, transcript variant X2
apoptosis-associated speck-like protein containing a CARD isoform X2
apoptosis-associated speck-like protein containing a CARD isoform X1
uncharacterized LOC129199032; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129199032, transcript variant X2
uncharacterized LOC129199032, transcript variant X1
integrin subunit alpha L; Derived by automated computational analysis using gene prediction method: Gnomon.
bolA family member 2B; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 8 Proteins
SLX1 homolog A, structure-specific endonuclease subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
SLX1 homolog A, structure-specific endonuclease subunit
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
structure-specific endonuclease subunit SLX1
SAGA complex associated factor 29; Derived by automated computational analysis using gene prediction method: Gnomon.
SAGA complex associated factor 29, transcript variant X2
SAGA complex associated factor 29, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
uncharacterized LOC129199035; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129199033; Derived by automated computational analysis using gene prediction method: Gnomon.
CLN3 lysosomal/endosomal transmembrane protein, battenin; Derived by automated computational analysis using gene prediction method: Gnomon.
CLN3 lysosomal/endosomal transmembrane protein, battenin, transcript variant X3
CLN3 lysosomal/endosomal transmembrane protein, battenin, transcript variant X4
CLN3 lysosomal/endosomal transmembrane protein, battenin, transcript variant X5
CLN3 lysosomal/endosomal transmembrane protein, battenin, transcript variant X2
CLN3 lysosomal/endosomal transmembrane protein, battenin, transcript variant X1
eukaryotic translation initiation factor 3 subunit C-like; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 3 subunit C-like
proline dehydrogenase 2; Derived by automated computational analysis using gene prediction method: Gnomon.
MYC associated zinc finger protein; Derived by automated computational analysis using gene prediction method: Gnomon.
MYC associated zinc finger protein, transcript variant X1
MYC associated zinc finger protein, transcript variant X2
myc-associated zinc finger protein isoform X2
myc-associated zinc finger protein isoform X1
INO80 complex subunit E; Derived by automated computational analysis using gene prediction method: Gnomon.
INO80 complex subunit E, transcript variant X2
INO80 complex subunit E, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
PAXIP1 associated glutamate rich protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
PAXIP1 associated glutamate rich protein 1, transcript variant X2
PAXIP1 associated glutamate rich protein 1, transcript variant X1
PAXIP1-associated glutamate-rich protein 1
seizure protein 6 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
histone-lysine N-methyltransferase SETD1A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
histone-lysine N-methyltransferase SETD1A-like
hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7; Derived by automated computational analysis using gene prediction method: Gnomon.
hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
3 beta-hydroxysteroid dehydrogenase type 7
uncharacterized LOC129199010; Derived by automated computational analysis using gene prediction method: Gnomon.
mucin-5AC-like; Derived by automated computational analysis using gene prediction method: Gnomon.
perforin 1; Derived by automated computational analysis using gene prediction method: Gnomon.
syntaxin 4; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 1 Protein
syntaxin-1B; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 Proteins
mitogen-activated protein kinase 7; Derived by automated computational analysis using gene prediction method: Gnomon.
mitogen-activated protein kinase 7, transcript variant X1
mitogen-activated protein kinase 7, transcript variant X4
mitogen-activated protein kinase 7, transcript variant X2
mitogen-activated protein kinase 7, transcript variant X3
mitogen-activated protein kinase 7 isoform X1
mitogen-activated protein kinase 7 isoform X2
uncharacterized LOC129198983; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins
zinc finger protein 668; Derived by automated computational analysis using gene prediction method: Gnomon.
serine protease 53-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: serine protease 53-like
vitamin K epoxide reductase complex subunit 1; Derived by automated computational analysis using gene prediction method: Gnomon.
vitamin K epoxide reductase complex subunit 1
branched chain keto acid dehydrogenase kinase; Derived by automated computational analysis using gene prediction method: Gnomon.
branched chain keto acid dehydrogenase kinase, transcript variant X1
branched chain keto acid dehydrogenase kinase, transcript variant X2
branched chain keto acid dehydrogenase kinase, transcript variant X4
branched chain keto acid dehydrogenase kinase, transcript variant X3
3-methyl-2-oxobutanoate dehydrogenase [lipoamide] kinase, mitochondrial isoform X1
branched chain keto acid dehydrogenase kinase, transcript variant X5
branched chain keto acid dehydrogenase kinase, transcript variant X6
3-methyl-2-oxobutanoate dehydrogenase [lipoamide] kinase, mitochondrial isoform X2
uncharacterized LOC129199034; Derived by automated computational analysis using gene prediction method: Gnomon.
FUS RNA binding protein; Derived by automated computational analysis using gene prediction method: Gnomon.
serine protease 33-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
lysine acetyltransferase 8; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
zinc finger protein 271-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 109 Proteins
transforming growth factor beta regulator 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
transforming growth factor beta regulator 1-like
translational activator of cytochrome c oxidase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
translational activator of cytochrome c oxidase 1
integrin subunit alpha X; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 24 Proteins
cytochrome c oxidase subunit 6A2, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon.
cytochrome c oxidase subunit 6A2, mitochondrial
integrin alpha-M-like; Derived by automated computational analysis using gene prediction method: Gnomon.
integrin alpha-M-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 32 Proteins
integrin alpha-M-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
transforming growth factor beta 1 induced transcript 1; Derived by automated computational analysis using gene prediction method: Gnomon.
transforming growth factor beta 1 induced transcript 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
transforming growth factor beta-1-induced transcript 1 protein
armadillo repeat containing 5; Derived by automated computational analysis using gene prediction method: Gnomon.
armadillo repeat containing 5, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
armadillo repeat containing 5, transcript variant X6
armadillo repeat containing 5, transcript variant X5
armadillo repeat containing 5, transcript variant X4
armadillo repeat containing 5, transcript variant X2
armadillo repeat containing 5, transcript variant X8
armadillo repeat containing 5, transcript variant X3
armadillo repeat containing 5, transcript variant X1
armadillo repeat-containing protein 5 isoform X7
armadillo repeat-containing protein 5 isoform X6
armadillo repeat-containing protein 5 isoform X5
armadillo repeat-containing protein 5 isoform X4
armadillo repeat-containing protein 5 isoform X2
armadillo repeat-containing protein 5 isoform X8
armadillo repeat-containing protein 5 isoform X3
armadillo repeat-containing protein 5 isoform X1
mucin-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
elongin-B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 13 Proteins
serine protease 27-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine protease 27-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
serine protease 27-like, transcript variant X2
protein kinase, membrane associated tyrosine/threonine 1; Derived by automated computational analysis using gene prediction method: Gnomon.
protein kinase, membrane associated tyrosine/threonine 1
membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase
uncharacterized LOC129198990; Derived by automated computational analysis using gene prediction method: Gnomon.