Grus americana isolate bGruAme1 chromosome 38, bGruAme1.mat, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Gruidae; Grus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM054342.1.\nAssembly name: bGruAme1.mat\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2023/02/24. The original whole-genome shotgun project has the\naccession JARBUS000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 16-FEB-2022\nAssembly Method :: TrioCanu v. 2.1; purge_dups v. 1.0.0;\n Scaff 10x v. 4.1.0; salsa v. 2.2; Arrow\n polishing & gap filling v. 2.0.2; Merfin\n polishing v. 1.0; Freebayes polishing v.\n 1.3.1\nAssembly Name :: bGruAme1.mat\nDiploid :: Maternal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 232.6x\nSequencing Technology :: PacBio Sequel II CLR; 10X Gemonics linked\n reads; Arima Hi-C v1; Bionano DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_028858705.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/31/2023\n##Genome-Annotation-Data-END##
histone deacetylase 6; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
Derived by automated computational analysis using gene prediction method: Gnomon.
WD repeat domain 45; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 13 Proteins
WD repeat domain phosphoinositide-interacting protein 4
G-patch domain and KOW motifs; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: G-patch domain and KOW motifs-containing protein
MAGI family member, X-linked; Derived by automated computational analysis using gene prediction method: Gnomon.
MAGI family member, X-linked, transcript variant X2
MAGI family member, X-linked, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
MAGI family member, X-linked, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
MAGI family member, X-linked, transcript variant X4
PDZ domain-containing protein MAGIX isoform X1
PDZ domain-containing protein MAGIX isoform X2
PDZ domain-containing protein MAGIX isoform X3
PDZ domain-containing protein MAGIX isoform X4
proteolipid protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
FtsJ RNA 2'-O-methyltransferase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 4 Proteins
putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
structural maintenance of chromosomes 1A; Derived by automated computational analysis using gene prediction method: Gnomon.
structural maintenance of chromosomes 1A
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 16 Proteins
structural maintenance of chromosomes protein 1A
IQ motif and SEC7 domain-containing protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
IQ motif and SEC7 domain-containing protein 2-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
IQ motif and SEC7 domain-containing protein 2-like, transcript variant X1
IQ motif and SEC7 domain-containing protein 2-like
lysine demethylase 5C; Derived by automated computational analysis using gene prediction method: Gnomon.
lysine demethylase 5C, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
lysine demethylase 5C, transcript variant X1
lysine-specific demethylase 5C isoform X1
lysine-specific demethylase 5C isoform X2
calcium voltage-gated channel subunit alpha1 F; Derived by automated computational analysis using gene prediction method: Gnomon.
calcium voltage-gated channel subunit alpha1 F
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
voltage-dependent L-type calcium channel subunit alpha-1F
coiled-coil domain containing 22; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil domain-containing protein 22
forkhead box P3; Derived by automated computational analysis using gene prediction method: Gnomon.
E3 ubiquitin-protein ligase Hakai-like; Derived by automated computational analysis using gene prediction method: Gnomon.
TSPY like 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
testis-specific Y-encoded-like protein 2
U8 snoRNA-decapping enzyme-like; Derived by automated computational analysis using gene prediction method: Gnomon.
N-alpha-acetyltransferase 10, NatA catalytic subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
N-alpha-acetyltransferase 10, NatA catalytic subunit, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
N-alpha-acetyltransferase 10, NatA catalytic subunit, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 13 Proteins
hydroxysteroid 17-beta dehydrogenase 10; Derived by automated computational analysis using gene prediction method: Gnomon.
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
6-phosphofructo-2-kinase/fructose-2, 6-biphosphatase 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 27 Proteins
6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase 1 isoform X1
6-phosphofructo-2-kinase/fructose-2, 6-biphosphatase 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 33 Proteins
6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase 1 isoform X2
non-structural maintenance of chromosomes element 3 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
non-structural maintenance of chromosomes element 3 homolog
G protein nucleolar 3 like; Derived by automated computational analysis using gene prediction method: Gnomon.
G protein nucleolar 3 like, transcript variant X2
G protein nucleolar 3 like, transcript variant X1
guanine nucleotide-binding protein-like 3-like protein isoform X1
guanine nucleotide-binding protein-like 3-like protein isoform X2
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1, transcript variant X3
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1, transcript variant X2
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1, transcript variant X4
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1, transcript variant X1
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1, transcript variant X5
E3 ubiquitin-protein ligase HUWE1 isoform X2
E3 ubiquitin-protein ligase HUWE1 isoform X1
E3 ubiquitin-protein ligase HUWE1 isoform X3
host cell factor C1; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
interleukin 1 receptor associated kinase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
interleukin 1 receptor associated kinase 1, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
interleukin 1 receptor associated kinase 1, transcript variant X3
interleukin 1 receptor associated kinase 1, transcript variant X2
interleukin 1 receptor associated kinase 1, transcript variant X1
interleukin-1 receptor-associated kinase 1 isoform X4
interleukin-1 receptor-associated kinase 1 isoform X3
interleukin-1 receptor-associated kinase 1 isoform X2
interleukin-1 receptor-associated kinase 1 isoform X1
methyl-CpG binding protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
LOW QUALITY PROTEIN: methyl-CpG-binding protein 2
blue-sensitive opsin; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 131 Proteins
red-sensitive opsin; Derived by automated computational analysis using gene prediction method: Gnomon.
red-sensitive opsin, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 Proteins
red-sensitive opsin, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 76 Proteins
ATPase plasma membrane Ca2+ transporting 3; Derived by automated computational analysis using gene prediction method: Gnomon.
ATPase plasma membrane Ca2+ transporting 3, transcript variant X2
ATPase plasma membrane Ca2+ transporting 3, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
ATPase plasma membrane Ca2+ transporting 3, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
ATPase plasma membrane Ca2+ transporting 3, transcript variant X4
ATPase plasma membrane Ca2+ transporting 3, transcript variant X5
ATPase plasma membrane Ca2+ transporting 3, transcript variant X6
ATPase plasma membrane Ca2+ transporting 3, transcript variant X7
plasma membrane calcium-transporting ATPase 3 isoform X1
plasma membrane calcium-transporting ATPase 3 isoform X2
plasma membrane calcium-transporting ATPase 3 isoform X3
plasma membrane calcium-transporting ATPase 3 isoform X4
plasma membrane calcium-transporting ATPase 3 isoform X5
plasma membrane calcium-transporting ATPase 3 isoform X6
plasma membrane calcium-transporting ATPase 3 isoform X7
cyclin Q; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
HAUS augmin like complex subunit 7; Derived by automated computational analysis using gene prediction method: Gnomon.
HAUS augmin like complex subunit 7, transcript variant X2
HAUS augmin like complex subunit 7, transcript variant X1
filamin A; Derived by automated computational analysis using gene prediction method: Gnomon.
ribosomal protein L10; Derived by automated computational analysis using gene prediction method: Gnomon.
small nucleolar RNA SNORA70; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00156
Derived by automated computational analysis using gene prediction method: cmsearch.
PDZ domain containing 4; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
L1 cell adhesion molecule; Derived by automated computational analysis using gene prediction method: Gnomon.
L1 cell adhesion molecule, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 Proteins
L1 cell adhesion molecule, transcript variant X1
L1 cell adhesion molecule, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 41 Proteins
neural cell adhesion molecule L1 isoform X2
neural cell adhesion molecule L1 isoform X1
neural cell adhesion molecule L1 isoform X3
signal sequence receptor subunit 4; Derived by automated computational analysis using gene prediction method: Gnomon.
translocon-associated protein subunit delta
isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma; Derived by automated computational analysis using gene prediction method: Gnomon.
isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma
isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial
SRSF protein kinase 3; Derived by automated computational analysis using gene prediction method: Gnomon.
SRSF protein kinase 3, transcript variant X1
SRSF protein kinase 3, transcript variant X2
OTU deubiquitinase 5; Derived by automated computational analysis using gene prediction method: Gnomon.
OTU deubiquitinase 5, transcript variant X3
OTU deubiquitinase 5, transcript variant X2
OTU deubiquitinase 5, transcript variant X1
OTU domain-containing protein 5 isoform X2
OTU domain-containing protein 5 isoform X3
OTU domain-containing protein 5 isoform X1
EBP cholestenol delta-isomerase; Derived by automated computational analysis using gene prediction method: Gnomon.
3-beta-hydroxysteroid-Delta(8), Delta(7)-isomerase
coiled-coil domain containing 120; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil domain-containing protein 120
transcription factor binding to IGHM enhancer 3; Derived by automated computational analysis using gene prediction method: Gnomon.
transcription factor binding to IGHM enhancer 3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 Proteins
GRIP1 associated protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
GRIP1 associated protein 1, transcript variant X1
GRIP1 associated protein 1, transcript variant X2
GRIP1 associated protein 1, transcript variant X3
TBC1 domain family member 25; Derived by automated computational analysis using gene prediction method: Gnomon.
WASP actin nucleation promoting factor; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
LOW QUALITY PROTEIN: actin nucleation-promoting factor WAS
SUV39H1 histone lysine methyltransferase; Derived by automated computational analysis using gene prediction method: Gnomon.
SUV39H1 histone lysine methyltransferase
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
histone-lysine N-methyltransferase SUV39H1
WD repeat domain 13; Derived by automated computational analysis using gene prediction method: Gnomon.
tafazzin, phospholipid-lysophospholipid transacylase; Derived by automated computational analysis using gene prediction method: Gnomon.
tafazzin, phospholipid-lysophospholipid transacylase, transcript variant X2
tafazzin, phospholipid-lysophospholipid transacylase, transcript variant X1
tafazzin, phospholipid-lysophospholipid transacylase, transcript variant X3
tafazzin, phospholipid-lysophospholipid transacylase, transcript variant X4
B cell receptor associated protein 31; Derived by automated computational analysis using gene prediction method: Gnomon.
B cell receptor associated protein 31, transcript variant X2
B cell receptor associated protein 31, transcript variant X1
B-cell receptor-associated protein 31 isoform X1
B-cell receptor-associated protein 31 isoform X2
CXXC finger protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
CXXC finger protein 1, transcript variant X2
CXXC finger protein 1, transcript variant X1
CXXC finger protein 1, transcript variant X3
CXXC finger protein 1, transcript variant X4
CXXC-type zinc finger protein 1 isoform X2
CXXC-type zinc finger protein 1 isoform X1
CXXC-type zinc finger protein 1 isoform X3
synaptonemal complex central element protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
synaptonemal complex central element protein 1
MON1 homolog B, secretory trafficking associated; Derived by automated computational analysis using gene prediction method: Gnomon.
MON1 homolog B, secretory trafficking associated, transcript variant X2
MON1 homolog B, secretory trafficking associated, transcript variant X1
vacuolar fusion protein MON1 homolog B isoform X2
vacuolar fusion protein MON1 homolog B isoform X1
basic salivary proline-rich protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
basic salivary proline-rich protein 1-like, transcript variant X1
basic salivary proline-rich protein 1-like, transcript variant X3
basic salivary proline-rich protein 1-like, transcript variant X2
basic salivary proline-rich protein 1-like isoform X1
tyrosine-protein phosphatase non-receptor type 18-like isoform X2
IMP U3 small nucleolar ribonucleoprotein 4; Derived by automated computational analysis using gene prediction method: Gnomon.
IMP U3 small nucleolar ribonucleoprotein 4
U3 small nucleolar ribonucleoprotein protein IMP4
coiled-coil domain containing 115; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil domain-containing protein 115
ubiquitin like modifier activating enzyme 1; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin like modifier activating enzyme 1
ubiquitin-like modifier-activating enzyme 1
NADH:ubiquinone oxidoreductase subunit B11; Derived by automated computational analysis using gene prediction method: Gnomon.
NADH:ubiquinone oxidoreductase subunit B11
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial
RNA binding motif protein 10; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: RNA-binding protein 10
complement factor properdin; Derived by automated computational analysis using gene prediction method: Gnomon.
complement factor properdin, transcript variant X1
complement factor properdin, transcript variant X2
complement factor properdin, transcript variant X3
synapsin I; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitously expressed prefoldin like chaperone; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitously expressed prefoldin like chaperone, transcript variant X1
ubiquitously expressed prefoldin like chaperone, transcript variant X2
cyclin dependent kinase 16; Derived by automated computational analysis using gene prediction method: Gnomon.
cyclin dependent kinase 16, transcript variant X2
cyclin dependent kinase 16, transcript variant X4
cyclin dependent kinase 16, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 53 Proteins
cyclin dependent kinase 16, transcript variant X1
RNA binding motif protein 3; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA binding motif protein 3, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
RNA binding motif protein 3, transcript variant X1
uncharacterized LOC129198924; Derived by automated computational analysis using gene prediction method: Gnomon.