Grus americana isolate bGruAme1 chromosome 37, bGruAme1.mat, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Gruidae; Grus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM054341.1.\nAssembly name: bGruAme1.mat\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2023/02/24. The original whole-genome shotgun project has the\naccession JARBUS000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 16-FEB-2022\nAssembly Method :: TrioCanu v. 2.1; purge_dups v. 1.0.0;\n Scaff 10x v. 4.1.0; salsa v. 2.2; Arrow\n polishing & gap filling v. 2.0.2; Merfin\n polishing v. 1.0; Freebayes polishing v.\n 1.3.1\nAssembly Name :: bGruAme1.mat\nDiploid :: Maternal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 232.6x\nSequencing Technology :: PacBio Sequel II CLR; 10X Gemonics linked\n reads; Arima Hi-C v1; Bionano DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_028858705.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/31/2023\n##Genome-Annotation-Data-END##
A-kinase anchor protein 1, mitochondrial-like; Derived by automated computational analysis using gene prediction method: Gnomon.
A-kinase anchor protein 1, mitochondrial-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin carboxyl-terminal hydrolase 42-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin carboxyl-terminal hydrolase 42-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
olfactory receptor 14C36-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
uncharacterized LOC129198901; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129198901, transcript variant X2
uncharacterized LOC129198901, transcript variant X3
uncharacterized LOC129198901, transcript variant X1
Fc receptor-like protein 5; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
NDRG family member 2; Derived by automated computational analysis using gene prediction method: Gnomon.
NDRG family member 2, transcript variant X4
NDRG family member 2, transcript variant X1
NDRG family member 2, transcript variant X2
NDRG family member 2, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 51 Proteins
purine nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Gnomon.
phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase
apurinic/apyrimidinic endodeoxyribonuclease 1; Derived by automated computational analysis using gene prediction method: Gnomon.
apurinic/apyrimidinic endodeoxyribonuclease 1
DNA-(apurinic or apyrimidinic site) endonuclease
O-sialoglycoprotein endopeptidase; Derived by automated computational analysis using gene prediction method: Gnomon.
O-sialoglycoprotein endopeptidase, transcript variant X1
O-sialoglycoprotein endopeptidase, transcript variant X3
O-sialoglycoprotein endopeptidase, transcript variant X2
tRNA N6-adenosine threonylcarbamoyltransferase isoform X1
tRNA N6-adenosine threonylcarbamoyltransferase isoform X2
tetratricopeptide repeat domain 5; Derived by automated computational analysis using gene prediction method: Gnomon.
heterogeneous nuclear ribonucleoprotein C; Derived by automated computational analysis using gene prediction method: Gnomon.
heterogeneous nuclear ribonucleoprotein C, transcript variant X2
heterogeneous nuclear ribonucleoprotein C, transcript variant X3
heterogeneous nuclear ribonucleoprotein C, transcript variant X1
heterogeneous nuclear ribonucleoproteins C1/C2 isoform X2
heterogeneous nuclear ribonucleoproteins C1/C2 isoform X1
heterogeneous nuclear ribonucleoproteins C1/C2 isoform X3
uncharacterized LOC129198892; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129198891; Derived by automated computational analysis using gene prediction method: Gnomon.
SPT16 homolog, facilitates chromatin remodeling subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
SPT16 homolog, facilitates chromatin remodeling subunit
chromodomain helicase DNA binding protein 8; Derived by automated computational analysis using gene prediction method: Gnomon.
chromodomain helicase DNA binding protein 8, transcript variant X3
chromodomain helicase DNA binding protein 8, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 6 Proteins
chromodomain helicase DNA binding protein 8, transcript variant X1
chromodomain-helicase-DNA-binding protein 8 isoform X3
chromodomain-helicase-DNA-binding protein 8 isoform X1
chromodomain-helicase-DNA-binding protein 8 isoform X2
TOX high mobility group box family member 4; Derived by automated computational analysis using gene prediction method: Gnomon.
TOX high mobility group box family member 4
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: TOX high mobility group box family member 4
methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 12 Proteins
LOW QUALITY PROTEIN: N6-adenosine-methyltransferase catalytic subunit
spalt like transcription factor 2; Derived by automated computational analysis using gene prediction method: Gnomon.
spalt like transcription factor 2, transcript variant X1
spalt like transcription factor 2, transcript variant X2
immunoglobulin heavy variable 3-23-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 154 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 153 Proteins
Ig heavy chain Mem5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 480 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 149 Proteins
Ig mu chain C region-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 156 Proteins
uncharacterized LOC129198897; Derived by automated computational analysis using gene prediction method: Gnomon.
immunoglobulin heavy constant alpha 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
immunoglobulin heavy constant alpha 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 long SRA reads, 4 Proteins
Ig gamma-2A chain C region, membrane-bound form-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Ig gamma-2A chain C region, membrane-bound form-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
Ig epsilon chain C region-like; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 12 member 6-like; Derived by automated computational analysis using gene prediction method: Gnomon.