Grus americana isolate bGruAme1 chromosome 36, bGruAme1.mat, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Gruidae; Grus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM054340.1.\nAssembly name: bGruAme1.mat\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2023/02/24. The original whole-genome shotgun project has the\naccession JARBUS000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 16-FEB-2022\nAssembly Method :: TrioCanu v. 2.1; purge_dups v. 1.0.0;\n Scaff 10x v. 4.1.0; salsa v. 2.2; Arrow\n polishing & gap filling v. 2.0.2; Merfin\n polishing v. 1.0; Freebayes polishing v.\n 1.3.1\nAssembly Name :: bGruAme1.mat\nDiploid :: Maternal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 232.6x\nSequencing Technology :: PacBio Sequel II CLR; 10X Gemonics linked\n reads; Arima Hi-C v1; Bionano DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_028858705.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/31/2023\n##Genome-Annotation-Data-END##
mediator complex subunit 25; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 25
fuzzy planar cell polarity protein; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon.
lutropin subunit beta-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
mucin-3A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads
PTPRF interacting protein alpha 3; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
lin-7 homolog B, crumbs cell polarity complex component; Derived by automated computational analysis using gene prediction method: Gnomon.
lin-7 homolog B, crumbs cell polarity complex component, transcript variant X2
COORDINATES: polyA evidence [ECO:0006239]
lin-7 homolog B, crumbs cell polarity complex component, transcript variant X1
small nuclear ribonucleoprotein U1 subunit 70; Derived by automated computational analysis using gene prediction method: Gnomon.
small nuclear ribonucleoprotein U1 subunit 70
U1 small nuclear ribonucleoprotein 70 kDa
polynucleotide kinase 3'-phosphatase; Derived by automated computational analysis using gene prediction method: Gnomon.
polynucleotide kinase 3'-phosphatase, transcript variant X2
polynucleotide kinase 3'-phosphatase, transcript variant X1
bifunctional polynucleotide phosphatase/kinase isoform X1
bifunctional polynucleotide phosphatase/kinase isoform X2
RuvB like AAA ATPase 2; Derived by automated computational analysis using gene prediction method: Gnomon.
RuvB like AAA ATPase 2, transcript variant X1
RuvB like AAA ATPase 2, transcript variant X3
RuvB like AAA ATPase 2, transcript variant X2
glycogen synthase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
glycogen synthase 1, transcript variant X5
glycogen synthase 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
glycogen synthase 1, transcript variant X3
glycogen synthase 1, transcript variant X6
glycogen synthase 1, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
glycogen synthase 1, transcript variant X1
glycogen [starch] synthase, muscle isoform X4
glycogen [starch] synthase, muscle isoform X1
glycogen [starch] synthase, muscle isoform X5
glycogen [starch] synthase, muscle isoform X2
glycogen [starch] synthase, muscle isoform X3
glycogen [starch] synthase, muscle isoform X6
adaptor related protein complex 2 subunit alpha 1; Derived by automated computational analysis using gene prediction method: Gnomon.
adaptor related protein complex 2 subunit alpha 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 26 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: AP-2 complex subunit alpha-1
TBC1 domain family member 17-like; Derived by automated computational analysis using gene prediction method: Gnomon.
TBC1 domain family member 17-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 2 Proteins
TBC1 domain family member 17-like, transcript variant X1
TBC1 domain family member 17-like, transcript variant X3
TBC1 domain family member 17-like isoform X3
TBC1 domain family member 17-like isoform X2
TBC1 domain family member 17-like isoform X1
AKT1 substrate 1; Derived by automated computational analysis using gene prediction method: Gnomon.
nitric oxide synthase interacting protein; Derived by automated computational analysis using gene prediction method: Gnomon.
nitric oxide synthase interacting protein
nitric oxide synthase-interacting protein
proline rich 12; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
RAS related; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins
SR-related CTD associated factor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 3 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: splicing factor, arginine/serine-rich 19
SH3 and multiple ankyrin repeat domains 1; Derived by automated computational analysis using gene prediction method: Gnomon.
SH3 and multiple ankyrin repeat domains 1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: SH3 and multiple ankyrin repeat domains protein 1
synaptotagmin 3; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
leucine rich repeat containing 4B; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 9 Proteins
leucine-rich repeat-containing protein 4B
aspartate dehydrogenase domain containing; Derived by automated computational analysis using gene prediction method: Gnomon.
aspartate dehydrogenase domain containing, transcript variant X1
aspartate dehydrogenase domain containing, transcript variant X3
aspartate dehydrogenase domain containing, transcript variant X2
aspartate dehydrogenase domain-containing protein isoform X1
aspartate dehydrogenase domain-containing protein isoform X3
aspartate dehydrogenase domain-containing protein isoform X2
Josephin domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Josephin domain containing 2, transcript variant X1
Josephin domain containing 2, transcript variant X2
transfer RNA glutamic acid (anticodon CUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA threonine (anticodon AGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA aspartic acid (anticodon GUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA methionine (anticodon CAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA alanine (anticodon CGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA serine (anticodon GCU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA asparagine (anticodon GUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA glycine (anticodon GCC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
histone H2B 5; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 78 Proteins
histone H2A type 2-C-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 99 Proteins
transfer RNA lysine (anticodon UUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA glutamine (anticodon CUG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
solute carrier family 27 member 5; Derived by automated computational analysis using gene prediction method: Gnomon.
long-chain fatty acid transport protein 5
THAP domain containing 7; Derived by automated computational analysis using gene prediction method: Gnomon.
myosin heavy chain, embryonic smooth muscle isoform-like; Derived by automated computational analysis using gene prediction method: Gnomon.
myosin heavy chain, embryonic smooth muscle isoform-like
zinc finger and BTB domain containing 45; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and BTB domain containing 45
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
zinc finger and BTB domain-containing protein 45
gastrula zinc finger protein XlCGF17.1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
gastrula zinc finger protein XlCGF17.1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins
tripartite motif containing 28; Derived by automated computational analysis using gene prediction method: Gnomon.
tripartite motif containing 28, transcript variant X3
tripartite motif containing 28, transcript variant X1
tripartite motif containing 28, transcript variant X2
tripartite motif containing 28, transcript variant X4
transcription intermediary factor 1-beta isoform X1
transcription intermediary factor 1-beta isoform X3
transcription intermediary factor 1-beta isoform X2
transcription intermediary factor 1-beta isoform X4
ubiquitin conjugating enzyme E2 M; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
charged multivesicular body protein 2A; Derived by automated computational analysis using gene prediction method: Gnomon.
natterin-4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
zinc finger protein with KRAB and SCAN domains 8-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein with KRAB and SCAN domains 8-like, transcript variant X3
zinc finger protein with KRAB and SCAN domains 8-like, transcript variant X1
zinc finger protein with KRAB and SCAN domains 8-like, transcript variant X2
zinc finger protein with KRAB and SCAN domains 8-like isoform X2
zinc finger protein with KRAB and SCAN domains 8-like isoform X1
uncharacterized LOC129198843; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129198849; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129198849, transcript variant X4
uncharacterized LOC129198849, transcript variant X5
uncharacterized LOC129198849, transcript variant X1
uncharacterized LOC129198849, transcript variant X3
uncharacterized LOC129198849, transcript variant X2
uncharacterized protein LOC129198849 isoform X2
uncharacterized protein LOC129198849 isoform X3
uncharacterized protein LOC129198849 isoform X1
uncharacterized protein LOC129198849 isoform X4
uncharacterized LOC129198824; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129198822; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129198823; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129198832; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129198828; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129198828, transcript variant X1
uncharacterized LOC129198828, transcript variant X2
butyrophilin subfamily 3 member A2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: butyrophilin subfamily 3 member A2-like
butyrophilin subfamily 2 member A1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
butyrophilin subfamily 1 member A1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
LOW QUALITY PROTEIN: butyrophilin subfamily 1 member A1-like
uncharacterized LOC129198831; Derived by automated computational analysis using gene prediction method: Gnomon.
butyrophilin subfamily 3 member A1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
LOW QUALITY PROTEIN: butyrophilin subfamily 3 member A1-like
deleted in malignant brain tumors 1 protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
deleted in malignant brain tumors 1 protein-like
scavenger receptor cysteine-rich domain-containing group B protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
scavenger receptor cysteine-rich domain-containing group B protein-like, transcript variant X2
scavenger receptor cysteine-rich domain-containing group B protein-like, transcript variant X1
scavenger receptor cysteine-rich domain-containing group B protein-like isoform X2
scavenger receptor cysteine-rich domain-containing group B protein-like isoform X1
sulfotransferase 2B1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
sulfotransferase 2B1-like, transcript variant X2
sulfotransferase 2B1-like, transcript variant X1
zinc finger protein 883-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 883-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 1 Protein
zinc finger protein 883-like, transcript variant X1
deleted in malignant brain tumors 1 protein-like, transcript variant X2
deleted in malignant brain tumors 1 protein-like, transcript variant X1
deleted in malignant brain tumors 1 protein-like, transcript variant X4
deleted in malignant brain tumors 1 protein-like, transcript variant X5
deleted in malignant brain tumors 1 protein-like, transcript variant X3
deleted in malignant brain tumors 1 protein-like, transcript variant X6
deleted in malignant brain tumors 1 protein-like, transcript variant X7
deleted in malignant brain tumors 1 protein-like, transcript variant X10
deleted in malignant brain tumors 1 protein-like, transcript variant X8
deleted in malignant brain tumors 1 protein-like, transcript variant X11
deleted in malignant brain tumors 1 protein-like, transcript variant X9
deleted in malignant brain tumors 1 protein-like isoform X10
deleted in malignant brain tumors 1 protein-like isoform X8
deleted in malignant brain tumors 1 protein-like isoform X9
deleted in malignant brain tumors 1 protein-like isoform X7
deleted in malignant brain tumors 1 protein-like isoform X4
deleted in malignant brain tumors 1 protein-like isoform X5
deleted in malignant brain tumors 1 protein-like isoform X3
deleted in malignant brain tumors 1 protein-like isoform X2
deleted in malignant brain tumors 1 protein-like isoform X1
deleted in malignant brain tumors 1 protein-like isoform X6
deleted in malignant brain tumors 1 protein-like, transcript variant X12
deleted in malignant brain tumors 1 protein-like isoform X11
deleted in malignant brain tumors 1 protein-like, transcript variant X16
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
deleted in malignant brain tumors 1 protein-like, transcript variant X14
deleted in malignant brain tumors 1 protein-like, transcript variant X15
deleted in malignant brain tumors 1 protein-like isoform X15
deleted in malignant brain tumors 1 protein-like isoform X14
deleted in malignant brain tumors 1 protein-like isoform X13
deleted in malignant brain tumors 1 protein-like, transcript variant X13
deleted in malignant brain tumors 1 protein-like isoform X12
deleted in malignant brain tumors 1 protein-like, transcript variant X17
deleted in malignant brain tumors 1 protein-like isoform X16
deleted in malignant brain tumors 1 protein-like, transcript variant X18
deleted in malignant brain tumors 1 protein-like isoform X17
uncharacterized LOC129198829; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 628-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 93 Proteins
uncharacterized LOC129198830; Derived by automated computational analysis using gene prediction method: Gnomon.
CD5 antigen-like; Derived by automated computational analysis using gene prediction method: Gnomon.
SH3 domain binding kinase family member 3; Derived by automated computational analysis using gene prediction method: Gnomon.
SH3 domain binding kinase family member 3, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
SH3 domain binding kinase family member 3, transcript variant X2
uncharacterized serine/threonine-protein kinase SBK3
proline-rich protein 22-like; Derived by automated computational analysis using gene prediction method: Gnomon.