Grus americana isolate bGruAme1 chromosome 35, bGruAme1.mat, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Gruidae; Grus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM054339.1.\nAssembly name: bGruAme1.mat\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2023/02/24. The original whole-genome shotgun project has the\naccession JARBUS000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 16-FEB-2022\nAssembly Method :: TrioCanu v. 2.1; purge_dups v. 1.0.0;\n Scaff 10x v. 4.1.0; salsa v. 2.2; Arrow\n polishing & gap filling v. 2.0.2; Merfin\n polishing v. 1.0; Freebayes polishing v.\n 1.3.1\nAssembly Name :: bGruAme1.mat\nDiploid :: Maternal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 232.6x\nSequencing Technology :: PacBio Sequel II CLR; 10X Gemonics linked\n reads; Arima Hi-C v1; Bionano DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_028858705.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/31/2023\n##Genome-Annotation-Data-END##
uncharacterized LOC129198747; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129198747, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129198747, transcript variant X1
uncharacterized LOC129198778; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129198744; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
pyruvate carboxylase; Derived by automated computational analysis using gene prediction method: Gnomon.
pyruvate carboxylase, transcript variant X1
pyruvate carboxylase, transcript variant X2
ovo like transcriptional repressor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
putative transcription factor Ovo-like 1
ribonuclease H2 subunit C; Derived by automated computational analysis using gene prediction method: Gnomon.
ribonuclease H2 subunit C, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
ribonuclease H2 subunit C, transcript variant X1
lysine acetyltransferase 5; Derived by automated computational analysis using gene prediction method: Gnomon.
lysine acetyltransferase 5, transcript variant X4
lysine acetyltransferase 5, transcript variant X3
lysine acetyltransferase 5, transcript variant X1
lysine acetyltransferase 5, transcript variant X5
lysine acetyltransferase 5, transcript variant X2
histone acetyltransferase KAT5 isoform X5
histone acetyltransferase KAT5 isoform X2
histone acetyltransferase KAT5 isoform X4
histone acetyltransferase KAT5 isoform X1
histone acetyltransferase KAT5 isoform X3
RELA proto-oncogene, NF-kB subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: transcription factor p65
DR1 associated protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
solute carrier family 22 member 6-A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 22 member 6-A-like, transcript variant X2
solute carrier family 22 member 6-A-like, transcript variant X3
solute carrier family 22 member 6-A-like, transcript variant X1
solute carrier family 22 member 6-A-like isoform X1
solute carrier family 22 member 6-A-like isoform X2
solute carrier family 22 member 6-like; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 22 member 6-like, transcript variant X3
solute carrier family 22 member 6-like, transcript variant X4
solute carrier family 22 member 6-like, transcript variant X6
solute carrier family 22 member 6-like, transcript variant X1
solute carrier family 22 member 6-like, transcript variant X2
solute carrier family 22 member 6-like, transcript variant X5
solute carrier family 22 member 6-like isoform X1
solute carrier family 22 member 6-like isoform X2
solute carrier family 22 member 6-like isoform X5
solute carrier family 22 member 6-like isoform X3
solute carrier family 22 member 6-like isoform X4
solute carrier family 22 member 6-like isoform X6
double PHD fingers 2; Derived by automated computational analysis using gene prediction method: Gnomon.
double PHD fingers 2, transcript variant X2
double PHD fingers 2, transcript variant X1
CDC42 effector protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 21 Proteins
DNA polymerase alpha 2, accessory subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
DNA polymerase alpha 2, accessory subunit
calpain 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
speedy/RINGO cell cycle regulator family member C; Derived by automated computational analysis using gene prediction method: Gnomon.
speedy/RINGO cell cycle regulator family member C
synoviolin 1; Derived by automated computational analysis using gene prediction method: Gnomon.
E3 ubiquitin-protein ligase synoviolin isoform X1
E3 ubiquitin-protein ligase synoviolin isoform X2
pre-mRNA-processing factor 39-like; Derived by automated computational analysis using gene prediction method: Gnomon.
pre-mRNA-processing factor 39-like, transcript variant X3
pre-mRNA-processing factor 39-like, transcript variant X4
pre-mRNA-processing factor 39-like, transcript variant X2
pre-mRNA-processing factor 39-like, transcript variant X1
pre-mRNA-processing factor 39-like isoform X1
pre-mRNA-processing factor 39-like isoform X2
pre-mRNA-processing factor 39-like isoform X3
mitochondrial ribosomal protein L49; Derived by automated computational analysis using gene prediction method: Gnomon.
39S ribosomal protein L49, mitochondrial
FAU ubiquitin like and ribosomal protein S30 fusion; Derived by automated computational analysis using gene prediction method: Gnomon.
FAU ubiquitin like and ribosomal protein S30 fusion
FAU ubiquitin-like and ribosomal protein S30
zinc finger HIT-type containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger HIT domain-containing protein 2
actin nucleation-promoting factor WAS-like; Derived by automated computational analysis using gene prediction method: Gnomon.
actin nucleation-promoting factor WAS-like
zinc finger protein like 1; Derived by automated computational analysis using gene prediction method: Gnomon.
EGF-containing fibulin-like extracellular matrix protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
EGF-containing fibulin-like extracellular matrix protein 2, transcript variant X2
EGF-containing fibulin-like extracellular matrix protein 2, transcript variant X3
EGF-containing fibulin-like extracellular matrix protein 2, transcript variant X1
EGF-containing fibulin-like extracellular matrix protein 2 isoform X3
EGF-containing fibulin-like extracellular matrix protein 2 isoform X2
EGF-containing fibulin-like extracellular matrix protein 2 isoform X1
EGF-containing fibulin-like extracellular matrix protein 2, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
basic proline-rich protein-like isoform X4
FGF1 intracellular binding protein; Derived by automated computational analysis using gene prediction method: Gnomon.
acidic fibroblast growth factor intracellular-binding protein
TATA-box binding protein associated factor 6 like; Derived by automated computational analysis using gene prediction method: Gnomon.
TATA-box binding protein associated factor 6 like
TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L
transmembrane protein 179B; Derived by automated computational analysis using gene prediction method: Gnomon.
U2 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00004
Derived by automated computational analysis using gene prediction method: cmsearch.
autophagy related 2A; Derived by automated computational analysis using gene prediction method: Gnomon.
glycoprotein hormone subunit alpha 2; Derived by automated computational analysis using gene prediction method: Gnomon.
ADP ribosylation factor like GTPase 2; Derived by automated computational analysis using gene prediction method: Gnomon.
translation initiation factor IF-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
BCL2 associated agonist of cell death; Derived by automated computational analysis using gene prediction method: Gnomon.
phospholipase C beta 3; Derived by automated computational analysis using gene prediction method: Gnomon.
phospholipase C beta 3, transcript variant X2
phospholipase C beta 3, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 isoform X2
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3 isoform X1
phospholipase C beta 3, transcript variant X3
protein phosphatase 1 regulatory inhibitor subunit 14B; Derived by automated computational analysis using gene prediction method: Gnomon.
protein phosphatase 1 regulatory inhibitor subunit 14B
protein phosphatase 1 regulatory subunit 14B
FKBP prolyl isomerase 2; Derived by automated computational analysis using gene prediction method: Gnomon.
FKBP prolyl isomerase 2, transcript variant X1
FKBP prolyl isomerase 2, transcript variant X2
peptidyl-prolyl cis-trans isomerase FKBP2 isoform X1
peptidyl-prolyl cis-trans isomerase FKBP2 isoform X2
mitochondrial ribosomal protein L11; Derived by automated computational analysis using gene prediction method: Gnomon.
mitochondrial ribosomal protein L11, transcript variant X2
mitochondrial ribosomal protein L11, transcript variant X3
mitochondrial ribosomal protein L11, transcript variant X4
mitochondrial ribosomal protein L11, transcript variant X1
39S ribosomal protein L11, mitochondrial
neuronal PAS domain protein 4; Derived by automated computational analysis using gene prediction method: Gnomon.
neuronal PAS domain-containing protein 4
beta-1,4-glucuronyltransferase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
terminal uridylyl transferase 1, U6 snRNA-specific; Derived by automated computational analysis using gene prediction method: Gnomon.
terminal uridylyl transferase 1, U6 snRNA-specific
speckle targeted PIP5K1A-regulated poly(A) polymerase
metastasis associated 1 family member 2; Derived by automated computational analysis using gene prediction method: Gnomon.
metastasis associated 1 family member 2, transcript variant X2
metastasis associated 1 family member 2, transcript variant X1
metastasis-associated protein MTA2 isoform X2
metastasis-associated protein MTA2 isoform X1
EMAP like 3; Derived by automated computational analysis using gene prediction method: Gnomon.
echinoderm microtubule-associated protein-like 3 isoform X2
echinoderm microtubule-associated protein-like 3 isoform X1
transcriptional-regulating factor 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
transcriptional-regulating factor 1-like, transcript variant X2
transcriptional-regulating factor 1-like, transcript variant X1
transcriptional-regulating factor 1-like isoform X1
transcriptional-regulating factor 1-like isoform X2
beta-1,3-glucuronyltransferase 3; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3
glucosidase II alpha subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
glucosidase II alpha subunit, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
glucosidase II alpha subunit, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
glucosidase II alpha subunit, transcript variant X4
glucosidase II alpha subunit, transcript variant X3
zinc finger and BTB domain containing 3; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and BTB domain-containing protein 3
Ras converting CAAX endopeptidase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Ras converting CAAX endopeptidase 1, transcript variant X1
Ras converting CAAX endopeptidase 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
chromosome 35 C11orf80 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
type 2 DNA topoisomerase 6 subunit B-like
spectrin beta, non-erythrocytic 2; Derived by automated computational analysis using gene prediction method: Gnomon.
spectrin beta, non-erythrocytic 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 Proteins
spectrin beta, non-erythrocytic 2, transcript variant X2
spectrin beta chain, non-erythrocytic 2 isoform X1
spectrin beta chain, non-erythrocytic 2 isoform X2
RNA-binding protein 4B; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA-binding protein 4B, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins
RNA-binding protein 4B, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
RNA-binding protein 4B, transcript variant X7
RNA-binding protein 4B, transcript variant X4
RNA-binding protein 4B, transcript variant X6
RNA-binding protein 4B, transcript variant X3
RNA-binding protein 4B, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 7 Proteins
RNA-binding protein 4B, transcript variant X2
RNA binding motif protein 14; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA binding motif protein 14, transcript variant X4
RNA binding motif protein 14, transcript variant X2
RNA binding motif protein 14, transcript variant X3
RNA binding motif protein 14, transcript variant X1
RNA binding motif protein 14, transcript variant X5
copper chaperone for superoxide dismutase; Derived by automated computational analysis using gene prediction method: Gnomon.
copper chaperone for superoxide dismutase, transcript variant X2
copper chaperone for superoxide dismutase isoform X2
copper chaperone for superoxide dismutase, transcript variant X1
copper chaperone for superoxide dismutase isoform X1
coiled-coil domain containing 87; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil domain containing 87, transcript variant X1
coiled-coil domain-containing protein 87 isoform X1
coiled-coil domain containing 87, transcript variant X2
coiled-coil domain-containing protein 87 isoform X2
putative nuclease HARBI1; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA-binding protein 4B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA-binding protein 4B-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
RNA-binding protein 4B-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins
RNA-binding protein 4B-like, transcript variant X1
zinc ribbon domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc ribbon domain containing 2, transcript variant X1
zinc ribbon domain containing 2, transcript variant X2
neurexin-2-beta-like; Derived by automated computational analysis using gene prediction method: Gnomon.
FERM domain containing 8; Derived by automated computational analysis using gene prediction method: Gnomon.
SCY1 like pseudokinase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
reticulon 3; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger translocation associated; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger translocation-associated protein
microtubule affinity regulating kinase 2; Derived by automated computational analysis using gene prediction method: Gnomon.
microtubule affinity regulating kinase 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
microtubule affinity regulating kinase 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
serine/threonine-protein kinase MARK2 isoform X1
serine/threonine-protein kinase MARK2 isoform X2
microtubule affinity regulating kinase 2, transcript variant X3
serine/threonine-protein kinase MARK2 isoform X3
translation initiation factor IF-2-like, transcript variant X2
translation initiation factor IF-2-like, transcript variant X1
REST corepressor 2; Derived by automated computational analysis using gene prediction method: Gnomon.
REST corepressor 2, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
REST corepressor 2, transcript variant X2
REST corepressor 2, transcript variant X1
REST corepressor 2, transcript variant X9
REST corepressor 2, transcript variant X7
REST corepressor 2, transcript variant X4
REST corepressor 2, transcript variant X8
REST corepressor 2, transcript variant X6
REST corepressor 2, transcript variant X5
N-alpha-acetyltransferase 40, NatD catalytic subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
N-alpha-acetyltransferase 40, NatD catalytic subunit, transcript variant X1
N-alpha-acetyltransferase 40, NatD catalytic subunit, transcript variant X2
cytochrome c oxidase subunit 8B, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon.
cytochrome c oxidase subunit 8B, mitochondrial
syntaxin 5; Derived by automated computational analysis using gene prediction method: Gnomon.
nuclear RNA export factor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
transmembrane protein 223; Derived by automated computational analysis using gene prediction method: Gnomon.
neuroblast differentiation-associated protein AHNAK-like; Derived by automated computational analysis using gene prediction method: Gnomon.
neuroblast differentiation-associated protein AHNAK-like, transcript variant X1
neuroblast differentiation-associated protein AHNAK-like, transcript variant X3
neuroblast differentiation-associated protein AHNAK-like, transcript variant X2
neuroblast differentiation-associated protein AHNAK-like isoform X3
neuroblast differentiation-associated protein AHNAK-like isoform X2
neuroblast differentiation-associated protein AHNAK-like isoform X1
splicing factor 3b subunit 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 4 Proteins
eukaryotic translation initiation factor 1A domain containing; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 1A domain containing
uncharacterized LOC129198767; Derived by automated computational analysis using gene prediction method: Gnomon.
spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP; Derived by automated computational analysis using gene prediction method: Gnomon.
spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP
solute carrier family 3 member 2; Derived by automated computational analysis using gene prediction method: Gnomon.
tRNA methyltransferase activator subunit 11-2; Derived by automated computational analysis using gene prediction method: Gnomon.
tRNA methyltransferase activator subunit 11-2
multifunctional methyltransferase subunit TRM112-like protein
BAF nuclear assembly factor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
BAF nuclear assembly factor 1, transcript variant X2
BAF nuclear assembly factor 1, transcript variant X1
MUS81 structure-specific endonuclease subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
MUS81 structure-specific endonuclease subunit