Grus americana isolate bGruAme1 chromosome 34, bGruAme1.mat, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Gruidae; Grus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM054338.1.\nAssembly name: bGruAme1.mat\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2023/02/24. The original whole-genome shotgun project has the\naccession JARBUS000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 16-FEB-2022\nAssembly Method :: TrioCanu v. 2.1; purge_dups v. 1.0.0;\n Scaff 10x v. 4.1.0; salsa v. 2.2; Arrow\n polishing & gap filling v. 2.0.2; Merfin\n polishing v. 1.0; Freebayes polishing v.\n 1.3.1\nAssembly Name :: bGruAme1.mat\nDiploid :: Maternal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 232.6x\nSequencing Technology :: PacBio Sequel II CLR; 10X Gemonics linked\n reads; Arima Hi-C v1; Bionano DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_028858705.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/31/2023\n##Genome-Annotation-Data-END##
leucine rich repeat and fibronectin type III domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
leucine rich repeat and fibronectin type III domain containing 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
leucine-rich repeat and fibronectin type III domain-containing protein 1
syncollin; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
p21 (RAC1) activated kinase 4; Derived by automated computational analysis using gene prediction method: Gnomon.
p21 (RAC1) activated kinase 4, transcript variant X3
p21 (RAC1) activated kinase 4, transcript variant X6
p21 (RAC1) activated kinase 4, transcript variant X2
p21 (RAC1) activated kinase 4, transcript variant X1
p21 (RAC1) activated kinase 4, transcript variant X7
p21 (RAC1) activated kinase 4, transcript variant X4
p21 (RAC1) activated kinase 4, transcript variant X5
serine/threonine-protein kinase PAK 4 isoform X2
serine/threonine-protein kinase PAK 4 isoform X1
mitochondrial ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Gnomon.
28S ribosomal protein S12, mitochondrial
seryl-tRNA synthetase 2, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon.
NFKB inhibitor beta; Derived by automated computational analysis using gene prediction method: Gnomon.
sirtuin 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 11 Proteins
NAD-dependent protein deacetylase sirtuin-2
heterogeneous nuclear ribonucleoprotein L; Derived by automated computational analysis using gene prediction method: Gnomon.
heterogeneous nuclear ribonucleoprotein L, transcript variant X3
heterogeneous nuclear ribonucleoprotein L, transcript variant X1
heterogeneous nuclear ribonucleoprotein L, transcript variant X2
heterogeneous nuclear ribonucleoprotein L isoform X1
heterogeneous nuclear ribonucleoprotein L isoform X2
heterogeneous nuclear ribonucleoprotein L isoform X3
enoyl-CoA hydratase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
enoyl-CoA hydratase 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
enoyl-CoA hydratase 1, transcript variant X2
enoyl-CoA hydratase 1, transcript variant X1
delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial
actinin alpha 4; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 long SRA reads, 7 Proteins
eukaryotic translation initiation factor 3 subunit K; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 3 subunit K
ryanodine receptor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
E3 SUMO-protein ligase ZBED1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
E3 SUMO-protein ligase ZBED1-like, transcript variant X2
E3 SUMO-protein ligase ZBED1-like, transcript variant X1
E3 SUMO-protein ligase ZBED1-like, transcript variant X3
E3 SUMO-protein ligase ZBED1-like, transcript variant X5
E3 SUMO-protein ligase ZBED1-like, transcript variant X4
E3 SUMO-protein ligase ZBED1-like isoform X1
E3 SUMO-protein ligase ZBED1-like, transcript variant X6
E3 SUMO-protein ligase ZBED1-like isoform X2
E3 SUMO-protein ligase ZBED1-like isoform X3
zinc finger protein 541; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
uncharacterized LOC129198663; Derived by automated computational analysis using gene prediction method: Gnomon.
BRD4 interacting chromatin remodeling complex associated protein; Derived by automated computational analysis using gene prediction method: Gnomon.
BRD4 interacting chromatin remodeling complex associated protein, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 2 Proteins
BRD4 interacting chromatin remodeling complex associated protein, transcript variant X5
BRD4 interacting chromatin remodeling complex associated protein, transcript variant X1
BRD4 interacting chromatin remodeling complex associated protein, transcript variant X2
BRD4 interacting chromatin remodeling complex associated protein, transcript variant X6
BRD4 interacting chromatin remodeling complex associated protein, transcript variant X7
BRD4-interacting chromatin-remodeling complex-associated protein isoform X1
BRD4-interacting chromatin-remodeling complex-associated protein isoform X4
BRD4-interacting chromatin-remodeling complex-associated protein isoform X5
BRD4-interacting chromatin-remodeling complex-associated protein isoform X2
BRD4 interacting chromatin remodeling complex associated protein, transcript variant X4
BRD4-interacting chromatin-remodeling complex-associated protein isoform X3
EH domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
NOP53 ribosome biogenesis factor; Derived by automated computational analysis using gene prediction method: Gnomon.
gap junction delta-2 protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins
selenoprotein W; Derived by automated computational analysis using gene prediction method: Gnomon.
histone H3.3A; Derived by automated computational analysis using gene prediction method: Gnomon.
homeobox protein otx5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
homeobox protein otx5-like, transcript variant X1
homeobox protein otx5-like, transcript variant X2
distal membrane arm assembly component 2; Derived by automated computational analysis using gene prediction method: Gnomon.
distal membrane arm assembly component 2
distal membrane-arm assembly complex protein 2
branched chain keto acid dehydrogenase E1 subunit alpha; Derived by automated computational analysis using gene prediction method: Gnomon.
branched chain keto acid dehydrogenase E1 subunit alpha, transcript variant X1
branched chain keto acid dehydrogenase E1 subunit alpha, transcript variant X2
2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial isoform X1
2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial isoform X2
exosome component 5; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
B9 domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
B9 domain containing 2, transcript variant X2
B9 domain-containing protein 2 isoform X2
B9 domain containing 2, transcript variant X1
B9 domain-containing protein 2 isoform X1
transforming growth factor beta 1; Derived by automated computational analysis using gene prediction method: Gnomon.
transforming growth factor beta-1 proprotein
coiled-coil domain containing 97; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil domain containing 97, transcript variant X3
coiled-coil domain containing 97, transcript variant X2
coiled-coil domain containing 97, transcript variant X1
coiled-coil domain-containing protein 97 isoform X1
coiled-coil domain-containing protein 97 isoform X2
heterogeneous nuclear ribonucleoprotein U like 1; Derived by automated computational analysis using gene prediction method: Gnomon.
heterogeneous nuclear ribonucleoprotein U like 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads
heterogeneous nuclear ribonucleoprotein U like 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 15 Proteins
heterogeneous nuclear ribonucleoprotein U like 1, transcript variant X2
heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform X2
heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform X3
heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform X1
AXL receptor tyrosine kinase; Derived by automated computational analysis using gene prediction method: Gnomon.
AXL receptor tyrosine kinase, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
AXL receptor tyrosine kinase, transcript variant X2
AXL receptor tyrosine kinase, transcript variant X1
tyrosine-protein kinase receptor UFO isoform X3
tyrosine-protein kinase receptor UFO isoform X2
tyrosine-protein kinase receptor UFO isoform X1
cytochrome P450 2G1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
cytochrome P450 2G1-like, transcript variant X1
cytochrome P450 2G1-like, transcript variant X2
cytochrome P450 2H1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
periaxin; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read
homeodomain interacting protein kinase 4; Derived by automated computational analysis using gene prediction method: Gnomon.
homeodomain interacting protein kinase 4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
homeodomain-interacting protein kinase 4
phospholipase D family member 3; Derived by automated computational analysis using gene prediction method: Gnomon.
phospholipase D family member 3, transcript variant X1
phospholipase D family member 3, transcript variant X3
phospholipase D family member 3, transcript variant X2
phospholipase D family member 3, transcript variant X4
chromosome 34 C19orf47 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized protein C19orf47 homolog
AKT serine/threonine kinase 2; Derived by automated computational analysis using gene prediction method: Gnomon.
AKT serine/threonine kinase 2, transcript variant X1
AKT serine/threonine kinase 2, transcript variant X4
AKT serine/threonine kinase 2, transcript variant X3
AKT serine/threonine kinase 2, transcript variant X2
RAC-beta serine/threonine-protein kinase
F-box protein 46; Derived by automated computational analysis using gene prediction method: Gnomon.
gastric inhibitory polypeptide receptor-like; Derived by automated computational analysis using gene prediction method: Gnomon.
gastric inhibitory polypeptide receptor-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
outer mitochondrial membrane lipid metabolism regulator OPA3; Derived by automated computational analysis using gene prediction method: Gnomon.
outer mitochondrial membrane lipid metabolism regulator OPA3
vasodilator stimulated phosphoprotein; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: vasodilator-stimulated phosphoprotein
reticulon 2; Derived by automated computational analysis using gene prediction method: Gnomon.
FosB proto-oncogene, AP-1 transcription factor subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
FosB proto-oncogene, AP-1 transcription factor subunit, transcript variant X1
FosB proto-oncogene, AP-1 transcription factor subunit, transcript variant X2
exocyst complex component 3 like 2; Derived by automated computational analysis using gene prediction method: Gnomon.
exocyst complex component 3-like protein 2
microtubule affinity regulating kinase 4; Derived by automated computational analysis using gene prediction method: Gnomon.
microtubule affinity regulating kinase 4, transcript variant X1
microtubule affinity regulating kinase 4, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
MAP/microtubule affinity-regulating kinase 4 isoform X1
MAP/microtubule affinity-regulating kinase 4 isoform X2
creatine kinase, M-type; Derived by automated computational analysis using gene prediction method: Gnomon.
ERCC excision repair 2, TFIIH core complex helicase subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
ERCC excision repair 2, TFIIH core complex helicase subunit, transcript variant X3
ERCC excision repair 2, TFIIH core complex helicase subunit, transcript variant X1
ERCC excision repair 2, TFIIH core complex helicase subunit, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
general transcription and DNA repair factor IIH helicase subunit XPD isoform X2
general transcription and DNA repair factor IIH helicase subunit XPD isoform X1
ERCC excision repair 2, TFIIH core complex helicase subunit, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
ERCC excision repair 2, TFIIH core complex helicase subunit, transcript variant X4
general transcription and DNA repair factor IIH helicase subunit XPD isoform X3
delta like canonical Notch ligand 3; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
LOW QUALITY PROTEIN: delta-like protein 3
translocase of inner mitochondrial membrane 50; Derived by automated computational analysis using gene prediction method: Gnomon.
translocase of inner mitochondrial membrane 50
mitochondrial import inner membrane translocase subunit TIM50
SPT5 homolog, DSIF elongation factor subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
SPT5 homolog, DSIF elongation factor subunit, transcript variant X4
SPT5 homolog, DSIF elongation factor subunit, transcript variant X2
SPT5 homolog, DSIF elongation factor subunit, transcript variant X1
SPT5 homolog, DSIF elongation factor subunit, transcript variant X3
transcription elongation factor SPT5 isoform X2
transcription elongation factor SPT5 isoform X1
mediator complex subunit 29; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 6 Proteins
mediator of RNA polymerase II transcription subunit 29
PAF1 homolog, Paf1/RNA polymerase II complex component; Derived by automated computational analysis using gene prediction method: Gnomon.
PAF1 homolog, Paf1/RNA polymerase II complex component
RNA polymerase II-associated factor 1 homolog
sterile alpha motif domain containing 4B; Derived by automated computational analysis using gene prediction method: Gnomon.
sterile alpha motif domain containing 4B
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: protein Smaug homolog 2
SH3KBP1 binding protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
spectrin beta, non-erythrocytic 4; Derived by automated computational analysis using gene prediction method: Gnomon.
spectrin beta, non-erythrocytic 4, transcript variant X5
spectrin beta, non-erythrocytic 4, transcript variant X4
spectrin beta, non-erythrocytic 4, transcript variant X3
spectrin beta, non-erythrocytic 4, transcript variant X2
spectrin beta, non-erythrocytic 4, transcript variant X1
spectrin beta chain, non-erythrocytic 4 isoform X2
spectrin beta chain, non-erythrocytic 4 isoform X1
spectrin beta chain, non-erythrocytic 4 isoform X3
spectrin beta, non-erythrocytic 4, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
spectrin beta chain, non-erythrocytic 4 isoform X4
biliverdin reductase B; Derived by automated computational analysis using gene prediction method: Gnomon.
signal induced proliferation associated 1 like 3; Derived by automated computational analysis using gene prediction method: Gnomon.
signal induced proliferation associated 1 like 3, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
signal induced proliferation associated 1 like 3, transcript variant X3
signal induced proliferation associated 1 like 3, transcript variant X2
signal-induced proliferation-associated 1-like protein 3
double PHD fingers 1; Derived by automated computational analysis using gene prediction method: Gnomon.
double PHD fingers 1, transcript variant X2
double PHD fingers 1, transcript variant X3
double PHD fingers 1, transcript variant X1