Grus americana isolate bGruAme1 chromosome 30, bGruAme1.mat, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Gruiformes; Gruidae; Grus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM054334.1.\nAssembly name: bGruAme1.mat\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2023/02/24. The original whole-genome shotgun project has the\naccession JARBUS000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 16-FEB-2022\nAssembly Method :: TrioCanu v. 2.1; purge_dups v. 1.0.0;\n Scaff 10x v. 4.1.0; salsa v. 2.2; Arrow\n polishing & gap filling v. 2.0.2; Merfin\n polishing v. 1.0; Freebayes polishing v.\n 1.3.1\nAssembly Name :: bGruAme1.mat\nDiploid :: Maternal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 232.6x\nSequencing Technology :: PacBio Sequel II CLR; 10X Gemonics linked\n reads; Arima Hi-C v1; Bionano DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_028858705.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/31/2023\n##Genome-Annotation-Data-END##
beta-enolase; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
Derived by automated computational analysis using gene prediction method: Gnomon.
sperm associated antigen 7; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
calmodulin binding transcription activator 2; Derived by automated computational analysis using gene prediction method: Gnomon.
calmodulin binding transcription activator 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
calmodulin-binding transcription activator 2
translation initiation factor IF-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
kinesin family member 1C; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: kinesin-like protein KIF1C
procollagen C-endopeptidase enhancer; Derived by automated computational analysis using gene prediction method: Gnomon.
leucine rich repeats and calponin homology domain containing 4; Derived by automated computational analysis using gene prediction method: Gnomon.
leucine rich repeats and calponin homology domain containing 4, transcript variant X1
leucine rich repeats and calponin homology domain containing 4, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
leucine-rich repeat and calponin homology domain-containing protein 4 isoform X1
leucine-rich repeat and calponin homology domain-containing protein 4 isoform X2
ArfGAP with FG repeats 2; Derived by automated computational analysis using gene prediction method: Gnomon.
ArfGAP with FG repeats 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
ArfGAP with FG repeats 2, transcript variant X3
ArfGAP with FG repeats 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 1 Protein
arf-GAP domain and FG repeat-containing protein 2 isoform X2
arf-GAP domain and FG repeat-containing protein 2 isoform X1
arf-GAP domain and FG repeat-containing protein 2 isoform X3
neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 1-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 1-like
protein phosphatase 1 regulatory subunit 35-like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein phosphatase 1 regulatory subunit 35-like
methylphosphate capping enzyme; Derived by automated computational analysis using gene prediction method: Gnomon.
7SK snRNA methylphosphate capping enzyme
actin like 6B; Derived by automated computational analysis using gene prediction method: Gnomon.
GRB10-interacting GYF protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
GRB10-interacting GYF protein 1-like, transcript variant X6
GRB10-interacting GYF protein 1-like, transcript variant X5
GRB10-interacting GYF protein 1-like, transcript variant X3
GRB10-interacting GYF protein 1-like, transcript variant X1
GRB10-interacting GYF protein 1-like, transcript variant X2
GRB10-interacting GYF protein 1-like, transcript variant X4
GRB10-interacting GYF protein 1-like isoform X4
GRB10-interacting GYF protein 1-like isoform X5
GRB10-interacting GYF protein 1-like isoform X3
GRB10-interacting GYF protein 1-like isoform X1
GRB10-interacting GYF protein 1-like isoform X6
GRB10-interacting GYF protein 1-like isoform X2
POP7 homolog, ribonuclease P/MRP subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
POP7 homolog, ribonuclease P/MRP subunit
erythropoietin; Derived by automated computational analysis using gene prediction method: Gnomon.
transferrin receptor 2; Derived by automated computational analysis using gene prediction method: Gnomon.
transferrin receptor 2, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 5 Proteins
transferrin receptor 2, transcript variant X1
transferrin receptor 2, transcript variant X2
transferrin receptor 2, transcript variant X3
transferrin receptor 2, transcript variant X4
transferrin receptor protein 2 isoform X1
transferrin receptor protein 2 isoform X2
transferrin receptor protein 2 isoform X3
transferrin receptor protein 2 isoform X4
transferrin receptor protein 2 isoform X5
ephrin type-B receptor 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ephrin type-B receptor 4-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 67 Proteins
ephrin type-B receptor 4-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 71 Proteins
ephrin type-B receptor 4-like isoform X1
ephrin type-B receptor 4-like isoform X2
serrate, RNA effector molecule; Derived by automated computational analysis using gene prediction method: Gnomon.
serrate, RNA effector molecule, transcript variant X1
serrate, RNA effector molecule, transcript variant X2
serrate RNA effector molecule homolog isoform X1
serrate RNA effector molecule homolog isoform X2
transmembrane protein 256; Derived by automated computational analysis using gene prediction method: Gnomon.
neuroligin 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
sodium/potassium-transporting ATPase subunit beta-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
sodium/potassium-transporting ATPase subunit beta-2-like
G protein-coupled receptor kinase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 Proteins
zinc finger and BTB domain containing 4; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and BTB domain containing 4, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 9 Proteins
zinc finger and BTB domain containing 4, transcript variant X3
zinc finger and BTB domain containing 4, transcript variant X2
zinc finger and BTB domain containing 4, transcript variant X1
zinc finger and BTB domain-containing protein 4
RNA polymerase II subunit A; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA polymerase II subunit A, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 8 Proteins
DNA-directed RNA polymerase II subunit RPB1 isoform X1
RNA polymerase II subunit A, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 1 Protein
DNA-directed RNA polymerase II subunit RPB1 isoform X2
transfer RNA leucine (anticodon UAG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
telomerase Cajal body protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
adaptor related protein complex 4 subunit mu 1; Derived by automated computational analysis using gene prediction method: Gnomon.
adaptor related protein complex 4 subunit mu 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
small nuclear RNA activating complex polypeptide 2; Derived by automated computational analysis using gene prediction method: Gnomon.
small nuclear RNA activating complex polypeptide 2
snRNA-activating protein complex subunit 2
proline-, glutamic acid- and leucine-rich protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
proline-, glutamic acid- and leucine-rich protein 1-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 7 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: proline-, glutamic acid- and leucine-rich protein 1-like
acetylcholinesterase (Cartwright blood group); Derived by automated computational analysis using gene prediction method: Gnomon.
acetylcholinesterase (Cartwright blood group)
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
mucin-3B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129197882; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129197883; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129197877; Derived by automated computational analysis using gene prediction method: Gnomon.
mucin-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129197876; Derived by automated computational analysis using gene prediction method: Gnomon.
serpin family E member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
transfer RNA threonine (anticodon AGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
2-acylglycerol O-acyltransferase 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
2-acylglycerol O-acyltransferase 2-A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
2-acylglycerol O-acyltransferase 2-A-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins
TATA-box binding protein associated factor 6; Derived by automated computational analysis using gene prediction method: Gnomon.
TATA-box binding protein associated factor 6, transcript variant X2
TATA-box binding protein associated factor 6, transcript variant X1
transcription initiation factor TFIID subunit 6
polyunsaturated fatty acid lipoxygenase ALOX15B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
polyunsaturated fatty acid lipoxygenase ALOX15B-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins
LOW QUALITY PROTEIN: polyunsaturated fatty acid lipoxygenase ALOX15B-like
fission, mitochondrial 1; Derived by automated computational analysis using gene prediction method: Gnomon.
multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
zinc finger HIT-type containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger HIT domain-containing protein 1
retinal guanylyl cyclase 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
trafficking protein particle complex subunit 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
trafficking protein particle complex subunit 1-like, transcript variant X2
trafficking protein particle complex subunit 1-like, transcript variant X1
trafficking protein particle complex subunit 1-like, transcript variant X3
trafficking protein particle complex subunit 1-like isoform X1
trafficking protein particle complex subunit 1-like isoform X2
voltage-gated potassium channel subunit beta-3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
voltage-gated potassium channel subunit beta-3-like, transcript variant X5
voltage-gated potassium channel subunit beta-3-like, transcript variant X7
voltage-gated potassium channel subunit beta-3-like, transcript variant X10
voltage-gated potassium channel subunit beta-3-like, transcript variant X11
voltage-gated potassium channel subunit beta-3-like, transcript variant X9
voltage-gated potassium channel subunit beta-3-like, transcript variant X3
voltage-gated potassium channel subunit beta-3-like, transcript variant X2
voltage-gated potassium channel subunit beta-3-like, transcript variant X1
voltage-gated potassium channel subunit beta-3-like, transcript variant X4
voltage-gated potassium channel subunit beta-3-like, transcript variant X6
voltage-gated potassium channel subunit beta-3-like, transcript variant X8
voltage-gated potassium channel subunit beta-3-like isoform X2
voltage-gated potassium channel subunit beta-3-like isoform X5
voltage-gated potassium channel subunit beta-3-like isoform X1
voltage-gated potassium channel subunit beta-3-like isoform X3
voltage-gated potassium channel subunit beta-3-like isoform X4
voltage-gated potassium channel subunit beta-3-like isoform X6
voltage-gated potassium channel subunit beta-3-like isoform X7
voltage-gated potassium channel subunit beta-3-like isoform X8
voltage-gated potassium channel subunit beta-3-like isoform X9
voltage-gated potassium channel subunit beta-3-like isoform X10
coiled-coil domain-containing protein 81-like; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil domain-containing protein 81-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
uncharacterized LOC129197909; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129197910; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129197910, transcript variant X1
uncharacterized LOC129197910, transcript variant X2
uncharacterized LOC129197910, transcript variant X3
uncharacterized LOC129197911; Derived by automated computational analysis using gene prediction method: Gnomon.
phosphoribosylformylglycinamidine synthase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
phosphoribosylformylglycinamidine synthase-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
LOW QUALITY PROTEIN: phosphoribosylformylglycinamidine synthase-like
transcription factor HES-7-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129197939; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger HIT domain-containing protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger HIT domain-containing protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
voltage-gated potassium channel subunit beta-3-like
uncharacterized LOC129197919; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129197919, transcript variant X2
uncharacterized LOC129197919, transcript variant X1
uncharacterized LOC129197920; Derived by automated computational analysis using gene prediction method: Gnomon.
phosphoribosylformylglycinamidine synthase-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 2 Proteins
phosphoribosylformylglycinamidine synthase-like, transcript variant X2
sucrase-isomaltase, intestinal-like; Derived by automated computational analysis using gene prediction method: Gnomon.
maltase-glucoamylase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
maltase-glucoamylase-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
maltase-glucoamylase-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins
uncharacterized LOC129197954; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129197921; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129197921, transcript variant X2
uncharacterized LOC129197921, transcript variant X1
uncharacterized protein LOC129197921 isoform X2
uncharacterized protein LOC129197921 isoform X1
uncharacterized LOC129197961; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil domain-containing protein 81-like, transcript variant X3
coiled-coil domain-containing protein 81-like, transcript variant X1
coiled-coil domain-containing protein 81-like, transcript variant X2
uncharacterized protein LOC129197942 isoform X3
uncharacterized protein LOC129197942 isoform X1
coiled-coil domain-containing protein 81-like isoform X2
uncharacterized protein LOC129197941 isoform X3
uncharacterized protein LOC129197941 isoform X1
uncharacterized protein LOC129197943 isoform X1
RIMS-binding protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129197945; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129197947; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129197944; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129197946; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC129197948; Derived by automated computational analysis using gene prediction method: Gnomon.