Meleagris gallopavo isolate NT-WF06-2002-E0010 breed Aviagen turkey brand Nicholas breeding stock chromosome W, Turkey_5.1, whole genome shotgun sequence.
type: Entry
definition: Meleagris gallopavo isolate NT-WF06-2002-E0010 breed Aviagen turkey brand Nicholas breeding stock chromosome W, Turkey_5.1, whole genome shotgun sequence.
sequence version: NC_015042.2
sequence date: 2019-11-19
sequence: sequence
division: CON
label: NC_015042.2
type: RefSeq
SIO_000068: refseq
dblink: PRJNA62397
dblink: SAMN02981253
keyword: WGS
keyword: RefSeq
source: Meleagris gallopavo (turkey)
organism: Meleagris gallopavo
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris.
reference: 1
references: 20838655
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM000992.2.\nOn Dec 18, 2014 this sequence version replaced NC_015042.1.\nAssembly name: Turkey_5.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Turkey Genome Consortium on\n2014/11/24. The original whole-genome shotgun project has the\naccession ADDD00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Turkey Genome Consortium\nAssembly Date :: 2013\nAssembly Method :: MaSuRCA v. 1.9.2\nAssembly Name :: Turkey_5.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 35.0x\nSequencing Technology :: Illumina GAII; Sanger; 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Meleagris gallopavo Annotation\n Release 103\nAnnotation Version :: 103\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.2\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 260627
topology: linear
so has quality: SO_0000987
location: 1..260627
location: region:1-260627:1
RO_0002162: 9103

NC_015042
type: RefSeq
SIO_000068: refseq

PRJNA62397
type: BioProject
SIO_000068: bioproject

SAMN02981253
type: BioSample
SIO_000068: biosample

1
title: Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis
author: Dalloul, R.A.
author: Long, J.A.
author: Zimin, A.V.
author: Aslam, L.
author: Beal, K.
author: Blomberg Le Ann
author: Bouffard, P.
author: Burt, D.W.
author: Crasta, O.
author: Crooijmans, R.P.
author: Cooper, K.
author: Coulombe, R.A.
author: De, S.
author: Delany, M.E.
author: Dodgson, J.B.
author: Dong, J.J.
author: Evans, C.
author: Frederickson, K.M.
author: Flicek, P.
author: Florea, L.
author: Folkerts, O.
author: Groenen, M.A.
author: Harkins, T.T.
author: Herrero, J.
author: Hoffmann, S.
author: Megens, H.J.
author: Jiang, A.
author: de Jong, P.
author: Kaiser, P.
author: Kim, H.
author: Kim, K.W.
author: Kim, S.
author: Langenberger, D.
author: Lee, M.K.
author: Lee, T.
author: Mane, S.
author: Marcais, G.
author: Marz, M.
author: McElroy, A.P.
author: Modise, T.
author: Nefedov, M.
author: Notredame, C.
author: Paton, I.R.
author: Payne, W.S.
author: Pertea, G.
author: Prickett, D.
author: Puiu, D.
author: Qioa, D.
author: Raineri, E.
author: Ruffier, M.
author: Salzberg, S.L.
author: Schatz, M.C.
author: Scheuring, C.
author: Schmidt, C.J.
author: Schroeder, S.
author: Searle, S.M.
author: Smith, E.J.
author: Smith, J.
author: Sonstegard, T.S.
author: Stadler, P.F.
author: Tafer, H.
author: Tu, Z.J.
author: Van Tassell, C.P.
author: Vilella, A.J.
author: Williams, K.P.
author: Yorke, J.A.
author: Zhang, L.
author: Zhang, H.B.
author: Zhang, X.
author: Zhang, Y.
author: Reed, K.M.
journal: PLoS Biol. 8 (9) (2010)
pubmed: 20838655

20838655
type: PubMed
SIO_000068: pubmed

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:260627:1
position: 260627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-260627:1:source
so part of: sequence
organism: Meleagris gallopavo
mol type: genomic DNA
isolate: NT-WF06-2002-E0010
chromosome: W
sex: female
tissue type: blood
breed: Aviagen turkey brand Nicholas breeding stock
note: donated by Nicholas Turkey Breeding Farms

9103
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 9103
estimated length: unknown
gap type: between scaffolds
so part of: sequence
location: 23687..23786
location: region:23687-23786:1
so has part: feature:23687-23786:1:region

position:23687:1
position: 23687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23786:1
position: 23786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23687-23786:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 9103
estimated length: unknown
gap type: between scaffolds
so part of: sequence
location: 57106..57205
location: region:57106-57205:1
so has part: feature:57106-57205:1:region

position:57106:1
position: 57106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57205:1
position: 57205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57106-57205:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 9103
estimated length: unknown
gap type: between scaffolds
so part of: sequence
location: 64049..64148
location: region:64049-64148:1
so has part: feature:64049-64148:1:region

position:64049:1
position: 64049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64148:1
position: 64148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64049-64148:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 9103
estimated length: unknown
gap type: between scaffolds
so part of: sequence
location: 66211..66310
location: region:66211-66310:1
so has part: feature:66211-66310:1:region

position:66211:1
position: 66211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66310:1
position: 66310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66211-66310:1:region

LOC104915385
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104915385
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(66358..70783)
location: region:66358-70783:-1
so has part: feature:66358-70783:-1:exon
subclass of: SO_0000011

104915385
type: Gene
SIO_000068: ncbigene

position:66358:-1
position: 66358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:70783:-1
position: 70783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66358-70783:-1:exon

LOC104915385
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC104915385
product: uncharacterized LOC104915385
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 88 samples with support for all annotated introns
transcript id: XR_796346.3
SIO_010081: LOC104915385
subclass of: SO_0000673
so part of: LOC104915385
location: complement(join(66358..66565,67323..67512,70695..70783))
location: region:66358-70783:-1
so has part: feature:70695-70783:-1:exon
so has part: feature:67323-67512:-1:exon
so has part: feature:66358-66565:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:70695-70783:-1:exon

position:70695:-1
position: 70695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:67323-67512:-1:exon

position:67323:-1
position: 67323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:67512:-1
position: 67512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:66358-66565:-1:exon

position:66565:-1
position: 66565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116217581
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC116217581
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(66944..67026)
location: region:66944-67026:-1
so has part: feature:66944-67026:-1:exon
subclass of: SO_0000578

116217581
type: Gene
SIO_000068: ncbigene

position:66944:-1
position: 66944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:67026:-1
position: 67026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66944-67026:-1:exon

LOC116217581
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: snoRNA
gene: LOC116217581
product: small nucleolar RNA SNORD121A
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF01191
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004162273.1
SIO_010081: LOC116217581
subclass of: SO_0000673
so part of: LOC116217581
location: complement(66944..67026)
location: region:66944-67026:-1
so has part: feature:66944-67026:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:66944-67026:-1:exon

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 9103
estimated length: unknown
gap type: between scaffolds
so part of: sequence
location: 74405..74504
location: region:74405-74504:1
so has part: feature:74405-74504:1:region

position:74405:1
position: 74405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74504:1
position: 74504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:74405-74504:1:region

LOC116217582
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC116217582
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 75689..75752
location: region:75689-75752:1
so has part: feature:75689-75752:1:exon
subclass of: SO_0000578

116217582
type: Gene
SIO_000068: ncbigene

position:75689:1
position: 75689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:75752:1
position: 75752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75689-75752:1:exon

LOC116217582
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: snoRNA
gene: LOC116217582
product: small nucleolar RNA SNORD121A
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF01191
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004162274.1
SIO_010081: LOC116217582
subclass of: SO_0000673
so part of: LOC116217582
location: 75689..75752
location: region:75689-75752:1
so has part: feature:75689-75752:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:75689-75752:1:exon

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 9103
estimated length: unknown
gap type: between scaffolds
so part of: sequence
location: 76506..76605
location: region:76506-76605:1
so has part: feature:76506-76605:1:region

position:76506:1
position: 76506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:76605:1
position: 76605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:76506-76605:1:region

LOC100303669
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
alternative label: UBAP2
gene: LOC100303669
gene synonym: UBAP2
note: ubiquitin-associated protein 2; Derived by automated computational analysis using gene prediction method: BestRefSeq.
so part of: sequence
location: 85790..>88128
location: region:85790-88128:1
so has part: feature:85790-88128:1:exon
subclass of: SO_0000010

100303669
type: Gene
SIO_000068: ncbigene

position:85790:1
position: 85790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:88128:1
position: 88128
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85790-88128:1:exon

LOC100303669
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
alternative label: UBAP2
gene: LOC100303669
gene synonym: UBAP2
product: ubiquitin-associated protein 2
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001303167.1
exception: annotated by transcript or proteomic data
note: The RefSeq transcript aligns at 24% coverage compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001303167.1
SIO_010081: LOC100303669
subclass of: SO_0000673
so part of: LOC100303669
location: join(85790..85939,87156..87247,88080..>88128)
location: region:85790-88128:1
so has part: feature:85790-85939:1:exon
so has part: feature:87156-87247:1:exon
so has part: feature:88080-88128:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:85790-85939:1:exon

position:85939:1
position: 85939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:87156-87247:1:exon

position:87156:1
position: 87156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:87247:1
position: 87247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:88080-88128:1:exon

position:88080:1
position: 88080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100303669
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
alternative label: UBAP2
gene: LOC100303669
gene synonym: UBAP2
inference: similar to AA sequence (same species):RefSeq:NP_001290096.1
exception: annotated by transcript or proteomic data
note: The RefSeq protein aligns at 21% coverage compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: ubiquitin-associated protein 2
translation: MNTTNSLGLSVTSVSIPATTARAAPLVSSGKAPPNLPQGVPPLLHNQYIVGPGGLLPAYPIYGYDDLQMLQSRLPMDYYGITFPTPATLTGRDGSLANNPYSGDVTKFGRGDSTSPAPATTLAQPQQNQTQTHHTTQQPFLNPTLPPGYSYTGLPYYAGVPGIPSAFQYGPTMFVPPASAKQHGVNLNTASAPFQQASGYGQHGYGAAGYDDLTQGTAAGDYSKGGYSGSSQVQSKSAGTGPGKGVSVTSSNTGVPDISGSVYNKTQTFDKQGFHAGTPPPFSMPSALGSTGPLNTGVAQVMLQLLFSISCLHINSLIHRCCIIIFNKMGXVDPASATSQHHAAKVSXYQNWLWHFFILD
SIO_010081: LOC100303669
subclass of: SO_0000673
so part of: LOC100303669
location: join(85852..85939,87156..87247,88080..>88128)
location: region:85852-88128:1
so has part: feature:85852-85939:1:exon
so has part: feature:87156-87247:1:exon
so has part: feature:88080-88128:1:exon

NP_001290096.1
type: Protein
SIO_000068: ncbiprotein

position:85852:1
position: 85852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85852-85939:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:87156-87247:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:88080-88128:1:exon

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 9103
estimated length: unknown
gap type: between scaffolds
so part of: sequence
location: 91798..91897
location: region:91798-91897:1
so has part: feature:91798-91897:1:region

position:91798:1
position: 91798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:91897:1
position: 91897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:91798-91897:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 9103
estimated length: unknown
gap type: between scaffolds
so part of: sequence
location: 110036..110135
location: region:110036-110135:1
so has part: feature:110036-110135:1:region

position:110036:1
position: 110036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:110135:1
position: 110135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:110036-110135:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 9103
estimated length: unknown
gap type: between scaffolds
so part of: sequence
location: 116077..116176
location: region:116077-116176:1
so has part: feature:116077-116176:1:region

position:116077:1
position: 116077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:116176:1
position: 116176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:116077-116176:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 9103
estimated length: unknown
gap type: between scaffolds
so part of: sequence
location: 136644..136743
location: region:136644-136743:1
so has part: feature:136644-136743:1:region

position:136644:1
position: 136644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:136743:1
position: 136743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:136644-136743:1:region

LOC100548372
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC100548372
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(144544..179997)
location: region:144544-179997:-1
so has part: feature:144544-179997:-1:exon
subclass of: SO_0000010

100548372
type: Gene
SIO_000068: ncbigene

position:144544:-1
position: 144544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:179997:-1
position: 179997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:144544-179997:-1:exon

LOC100548372
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC100548372
product: ubiquitin-conjugating enzyme E2 R2-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031557458.1
SIO_010081: LOC100548372
subclass of: SO_0000673
so part of: LOC100548372
location: complement(join(144544..147294,155523..155657,159605..159702,166450..166590,179992..179997))
location: region:144544-179997:-1
so has part: feature:179992-179997:-1:exon
so has part: feature:166450-166590:-1:exon
so has part: feature:159605-159702:-1:exon
so has part: feature:155523-155657:-1:exon
so has part: feature:144544-147294:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:179992-179997:-1:exon

position:179992:-1
position: 179992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:166450-166590:-1:exon

position:166450:-1
position: 166450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:166590:-1
position: 166590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:159605-159702:-1:exon

position:159605:-1
position: 159605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:159702:-1
position: 159702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:155523-155657:-1:exon

position:155523:-1
position: 155523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:155657:-1
position: 155657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:144544-147294:-1:exon

position:147294:-1
position: 147294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100548372
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC100548372
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin-conjugating enzyme E2 R2-like
translation: MSLVDLLLFCFLTIIFCFFQAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAEIIRKQVWLPKLRQKRMA
SIO_010081: LOC100548372
subclass of: SO_0000673
so part of: LOC100548372
location: complement(join(147249..147294,155523..155657,159605..159702,166450..166590,179992..179997))
location: region:147249-179997:-1
so has part: feature:179992-179997:-1:exon
so has part: feature:166450-166590:-1:exon
so has part: feature:159605-159702:-1:exon
so has part: feature:155523-155657:-1:exon
so has part: feature:147249-147294:-1:exon

XP_031413318.1
type: Protein
SIO_000068: ncbiprotein

position:147249:-1
position: 147249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:179992-179997:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:166450-166590:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:159605-159702:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:155523-155657:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:147249-147294:-1:exon

LOC104915388
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104915388
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(161862..162347)
location: region:161862-162347:-1
so has part: feature:161862-162347:-1:exon

104915388
type: Gene
SIO_000068: ncbigene

position:161862:-1
position: 161862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:162347:-1
position: 162347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:161862-162347:-1:exon

LOC104915388
type: Exon
subclass of: SO_0000147
RO_0002162: 9103
gene: LOC104915388
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC104915388
subclass of: SO_0000673
so part of: LOC104915388
location: complement(161862..162347)
location: region:161862-162347:-1
so has part: feature:161862-162347:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:161862-162347:-1:exon

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 9103
estimated length: unknown
gap type: between scaffolds
so part of: sequence
location: 170229..170328
location: region:170229-170328:1
so has part: feature:170229-170328:1:region

position:170229:1
position: 170229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:170328:1
position: 170328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:170229-170328:1:region

LOC104915389
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104915389
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(231714..238023)
location: region:231714-238023:-1
so has part: feature:231714-238023:-1:exon
subclass of: SO_0000010

104915389
type: Gene
SIO_000068: ncbigene

position:231714:-1
position: 231714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:238023:-1
position: 238023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:231714-238023:-1:exon

LOC104915389
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104915389
product: zinc finger SWIM domain-containing protein 6-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
transcript id: XM_010726281.3
SIO_010081: LOC104915389
subclass of: SO_0000673
so part of: LOC104915389
location: complement(join(231714..236770,237253..238023))
location: region:231714-238023:-1
so has part: feature:237253-238023:-1:exon
so has part: feature:231714-236770:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:237253-238023:-1:exon

position:237253:-1
position: 237253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:231714-236770:-1:exon

position:236770:-1
position: 236770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104915389
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104915389
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger SWIM domain-containing protein 6-like
translation: MAERGQLPLYAKRFCCRLGYGSGCRLGQQAGDTGPGSGTFCAGSSSSAAAADAAAALVLLPLGKMQSPESLLDIAARKVAEKWPFQRVEERFERIPEPVQRRIVYWSFPRSEREICMYSSFDTGAEGFTTLGGTAANTMSGGAVDAVADENRLPFRRGMALLDGGCVDNVLQVGFTPGNPGHRCTLDHSREAMSPPCLPHLLRAAS
SIO_010081: LOC104915389
subclass of: SO_0000673
so part of: LOC104915389
location: complement(join(236670..236770,237253..237772))
location: region:236670-237772:-1
so has part: feature:237253-237772:-1:exon
so has part: feature:236670-236770:-1:exon

XP_010724583.1
type: Protein
SIO_000068: ncbiprotein

position:236670:-1
position: 236670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:237772:-1
position: 237772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:237253-237772:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:236670-236770:-1:exon