Meleagris gallopavo isolate NT-WF06-2002-E0010 breed Aviagen turkey brand Nicholas breeding stock chromosome 27, Turkey_5.1, whole genome shotgun sequence.
type: Entry
definition: Meleagris gallopavo isolate NT-WF06-2002-E0010 breed Aviagen turkey brand Nicholas breeding stock chromosome 27, Turkey_5.1, whole genome shotgun sequence.
sequence version: NC_015037.2
sequence date: 2019-11-19
sequence: sequence
division: CON
label: NC_015037.2
type: RefSeq
SIO_000068: refseq
dblink: PRJNA62397
dblink: SAMN02981253
keyword: WGS
keyword: RefSeq
source: Meleagris gallopavo (turkey)
organism: Meleagris gallopavo
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris.
reference: 1
references: 20838655
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM000988.2.\nOn Dec 18, 2014 this sequence version replaced NC_015037.1.\nAssembly name: Turkey_5.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Turkey Genome Consortium on\n2014/11/24. The original whole-genome shotgun project has the\naccession ADDD00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Turkey Genome Consortium\nAssembly Date :: 2013\nAssembly Method :: MaSuRCA v. 1.9.2\nAssembly Name :: Turkey_5.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 35.0x\nSequencing Technology :: Illumina GAII; Sanger; 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Meleagris gallopavo Annotation\n Release 103\nAnnotation Version :: 103\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.2\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 1412921
topology: linear
so has quality: SO_0000987
location: 1..1412921
location: region:1-1412921:1
RO_0002162: 9103

NC_015037
type: RefSeq
SIO_000068: refseq

PRJNA62397
type: BioProject
SIO_000068: bioproject

SAMN02981253
type: BioSample
SIO_000068: biosample

1
title: Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis
author: Dalloul, R.A.
author: Long, J.A.
author: Zimin, A.V.
author: Aslam, L.
author: Beal, K.
author: Blomberg Le Ann
author: Bouffard, P.
author: Burt, D.W.
author: Crasta, O.
author: Crooijmans, R.P.
author: Cooper, K.
author: Coulombe, R.A.
author: De, S.
author: Delany, M.E.
author: Dodgson, J.B.
author: Dong, J.J.
author: Evans, C.
author: Frederickson, K.M.
author: Flicek, P.
author: Florea, L.
author: Folkerts, O.
author: Groenen, M.A.
author: Harkins, T.T.
author: Herrero, J.
author: Hoffmann, S.
author: Megens, H.J.
author: Jiang, A.
author: de Jong, P.
author: Kaiser, P.
author: Kim, H.
author: Kim, K.W.
author: Kim, S.
author: Langenberger, D.
author: Lee, M.K.
author: Lee, T.
author: Mane, S.
author: Marcais, G.
author: Marz, M.
author: McElroy, A.P.
author: Modise, T.
author: Nefedov, M.
author: Notredame, C.
author: Paton, I.R.
author: Payne, W.S.
author: Pertea, G.
author: Prickett, D.
author: Puiu, D.
author: Qioa, D.
author: Raineri, E.
author: Ruffier, M.
author: Salzberg, S.L.
author: Schatz, M.C.
author: Scheuring, C.
author: Schmidt, C.J.
author: Schroeder, S.
author: Searle, S.M.
author: Smith, E.J.
author: Smith, J.
author: Sonstegard, T.S.
author: Stadler, P.F.
author: Tafer, H.
author: Tu, Z.J.
author: Van Tassell, C.P.
author: Vilella, A.J.
author: Williams, K.P.
author: Yorke, J.A.
author: Zhang, L.
author: Zhang, H.B.
author: Zhang, X.
author: Zhang, Y.
author: Reed, K.M.
journal: PLoS Biol. 8 (9) (2010)
pubmed: 20838655

20838655
type: PubMed
SIO_000068: pubmed

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1412921:1
position: 1412921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-1412921:1:source
so part of: sequence
organism: Meleagris gallopavo
mol type: genomic DNA
isolate: NT-WF06-2002-E0010
chromosome: 27
sex: female
tissue type: blood
breed: Aviagen turkey brand Nicholas breeding stock
note: donated by Nicholas Turkey Breeding Farms

9103
type: Taxonomy
SIO_000068: taxonomy

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 9103
estimated length: unknown
gap type: between scaffolds
so part of: sequence
location: 1136..1235
location: region:1136-1235:1
so has part: feature:1136-1235:1:region

position:1136:1
position: 1136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1235:1
position: 1235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1136-1235:1:region

LOC104914395
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914395
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4165..5973
location: region:4165-5973:1
so has part: feature:4165-5973:1:exon
subclass of: SO_0000010

104914395
type: Gene
SIO_000068: ncbigene

position:4165:1
position: 4165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5973:1
position: 5973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4165-5973:1:exon

LOC104914395
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914395
product: synaptic vesicle glycoprotein 2A-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 92% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_010723832.2
SIO_010081: LOC104914395
subclass of: SO_0000673
so part of: LOC104914395
location: join(4165..4373,5656..5815,5962..5973)
location: region:4165-5973:1
so has part: feature:4165-4373:1:exon
so has part: feature:5656-5815:1:exon
so has part: feature:5962-5973:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4165-4373:1:exon

position:4373:1
position: 4373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5656-5815:1:exon

position:5656:1
position: 5656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5815:1
position: 5815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5962-5973:1:exon

position:5962:1
position: 5962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC104914395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914395
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: synaptic vesicle glycoprotein 2A-like
translation: MGAGCQAQLLSPHSYYGLTVWFPDMIKHLQNIEYASRTKLFTREKVRHFTFNFTLENQIHQGGEYFNDKFIGLKMKSVTFEDSLFEDCYFEDITSSNTFFKNCTFISTIFYNTGLGWGRGSEWGN
SIO_010081: LOC104914395
subclass of: SO_0000673
so part of: LOC104914395
location: join(4168..4373,5656..5815,5962..5973)
location: region:4168-5973:1
so has part: feature:4168-4373:1:exon
so has part: feature:5656-5815:1:exon
so has part: feature:5962-5973:1:exon

XP_010722134.1
type: Protein
SIO_000068: ncbiprotein

position:4168:1
position: 4168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4168-4373:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5656-5815:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5962-5973:1:exon

SV2A
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: SV2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 7826..11510
location: region:7826-11510:1
so has part: feature:7826-11510:1:exon
subclass of: SO_0000010

104914397
type: Gene
SIO_000068: ncbigene

position:7826:1
position: 7826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11510:1
position: 11510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7826-11510:1:exon

SV2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: SV2A
product: synaptic vesicle glycoprotein 2A
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 63 samples with support for all annotated introns
transcript id: XM_010723834.1
SIO_010081: SV2A
subclass of: SO_0000673
so part of: SV2A
location: join(7826..7991,10784..11510)
location: region:7826-11510:1
so has part: feature:7826-7991:1:exon
so has part: feature:10784-11510:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7826-7991:1:exon

position:7991:1
position: 7991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10784-11510:1:exon

position:10784:1
position: 10784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SV2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: SV2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: synaptic vesicle glycoprotein 2A
translation: MDESFRDRTAFIRGAKDIAKEVKKHAAKKVSKGMDRVQDEYTKRSYSRFEEEDDDEDYAPQDGYYRGGEGAAEEEGASSDATEGHDEEDEIYEGEYQGIPRQDSLKGGERLGGEVTPGAFDDSEGQRRKDKEELAQQYELILQECGHGRFQWSLYFVLGLALMADGVEVFVVGFVLPSAEKDMCLSDSNKGMLGE
SIO_010081: SV2A
subclass of: SO_0000673
so part of: SV2A
location: 10923..11510
location: region:10923-11510:1
so has part: feature:10923-11510:1:exon

XP_010722136.1
type: Protein
SIO_000068: ncbiprotein

position:10923:1
position: 10923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10923-11510:1:exon

LOC104914392
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914392
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 17151..19008
location: region:17151-19008:1
so has part: feature:17151-19008:1:exon
subclass of: SO_0000010

104914392
type: Gene
SIO_000068: ncbigene

position:17151:1
position: 17151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19008:1
position: 19008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17151-19008:1:exon

LOC104914392
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914392
product: myotubularin-related protein 11-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 215 samples with support for all annotated introns
transcript id: XM_010723822.3
SIO_010081: LOC104914392
subclass of: SO_0000673
so part of: LOC104914392
location: join(17151..17517,18081..19008)
location: region:17151-19008:1
so has part: feature:17151-17517:1:exon
so has part: feature:18081-19008:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17151-17517:1:exon

position:17517:1
position: 17517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:18081-19008:1:exon

position:18081:1
position: 18081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC104914392
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914392
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myotubularin-related protein 11-like
translation: MAERPPPPRLLRWAPSLETLSDRGGDPIPTPPQGLLLPCAAGPSVRLWRRCYLRGLPEAQHGRLAPCPALLVEELALLQDRLHAWLQDGAHAEPASSPLAPSR
SIO_010081: LOC104914392
subclass of: SO_0000673
so part of: LOC104914392
location: join(17338..17517,18081..18212)
location: region:17338-18212:1
so has part: feature:17338-17517:1:exon
so has part: feature:18081-18212:1:exon

XP_010722124.1
type: Protein
SIO_000068: ncbiprotein

position:17338:1
position: 17338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18212:1
position: 18212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17338-17517:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:18081-18212:1:exon

SF3B4
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: SF3B4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 19106..24778
location: region:19106-24778:1
so has part: feature:19106-24778:1:exon
subclass of: SO_0000010

100550414
type: Gene
SIO_000068: ncbigene

position:19106:1
position: 19106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24778:1
position: 24778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19106-24778:1:exon

SF3B4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: SF3B4
product: splicing factor 3b subunit 4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 222 samples with support for all annotated introns
transcript id: XM_010723823.1
SIO_010081: SF3B4
subclass of: SO_0000673
so part of: SF3B4
location: join(19106..19214,19629..19757,20036..20578,21100..21294,24390..24778)
location: region:19106-24778:1
so has part: feature:19106-19214:1:exon
so has part: feature:19629-19757:1:exon
so has part: feature:20036-20578:1:exon
so has part: feature:21100-21294:1:exon
so has part: feature:24390-24778:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19106-19214:1:exon

position:19214:1
position: 19214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:19629-19757:1:exon

position:19629:1
position: 19629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19757:1
position: 19757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:20036-20578:1:exon

position:20036:1
position: 20036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20578:1
position: 20578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:21100-21294:1:exon

position:21100:1
position: 21100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21294:1
position: 21294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:24390-24778:1:exon

position:24390:1
position: 24390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SF3B4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: SF3B4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: splicing factor 3B subunit 4
translation: MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSVPTPVVTALGPGVTPPGLPPPGSFPPPVPPPGAMPPGMPPAMPPPPMPPGAGAPGPPTGAAPTGGHPPHPHAFPPGGMHHPGMPPMQVHHGPPGMGQHHPGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPHFGSPMGKSVAARGSTWVFRQSDPWSSSVPPSAPHPSFIGLGRRWCAVSSEQDLAALRCLLGFPRAFLVFLGM
SIO_010081: SF3B4
subclass of: SO_0000673
so part of: SF3B4
location: join(19181..19214,19629..19757,20036..20578,21100..21294,24390..24763)
location: region:19181-24763:1
so has part: feature:19181-19214:1:exon
so has part: feature:19629-19757:1:exon
so has part: feature:20036-20578:1:exon
so has part: feature:21100-21294:1:exon
so has part: feature:24390-24763:1:exon

XP_010722125.1
type: Protein
SIO_000068: ncbiprotein

position:19181:1
position: 19181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24763:1
position: 24763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19181-19214:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:19629-19757:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:20036-20578:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:21100-21294:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:24390-24763:1:exon

LOC104914393
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914393
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 25254..27620
location: region:25254-27620:1
so has part: feature:25254-27620:1:exon
subclass of: SO_0000010

104914393
type: Gene
SIO_000068: ncbigene

position:25254:1
position: 25254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27620:1
position: 27620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25254-27620:1:exon

LOC104914393
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914393
product: uncharacterized LOC104914393
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 200 samples with support for all annotated introns
transcript id: XM_010723824.3
SIO_010081: LOC104914393
subclass of: SO_0000673
so part of: LOC104914393
location: join(25254..26598,26686..27620)
location: region:25254-27620:1
so has part: feature:25254-26598:1:exon
so has part: feature:26686-27620:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25254-26598:1:exon

position:26598:1
position: 26598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:26686-27620:1:exon

position:26686:1
position: 26686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC104914393
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914393
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC104914393
translation: MTPIAPFTLGAPLSGTRGGDGAARPRSCPAAPKASEPPPINPPLQPPSFSPFLQSDYSVALRCIRTLVAASSFTKPTVLTAASTLTFIPEELAVFCRDFRLLRFHFPENGLGLQAFRVRGWTAFGAGAHVWCRPRAPRCRWPRPSHECGDWDVGSEWGWDAAWLGLGWGWDGIGIGMQLCGGWNKGRDAVGLGHVVERLGSGCSWDALGWSLDGLGWDQDGCGV
SIO_010081: LOC104914393
subclass of: SO_0000673
so part of: LOC104914393
location: join(26391..26598,26686..27152)
location: region:26391-27152:1
so has part: feature:26391-26598:1:exon
so has part: feature:26686-27152:1:exon

XP_010722126.1
type: Protein
SIO_000068: ncbiprotein

position:26391:1
position: 26391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27152:1
position: 27152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26391-26598:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:26686-27152:1:exon

OTUD7B
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: OTUD7B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 29023..39427
location: region:29023-39427:1
so has part: feature:29023-39427:1:exon
subclass of: SO_0000010

100551488
type: Gene
SIO_000068: ncbigene

position:29023:1
position: 29023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39427:1
position: 39427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29023-39427:1:exon

OTUD7B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: OTUD7B
product: OTU deubiquitinase 7B
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 192 samples with support for all annotated introns
transcript id: XM_031556920.1
SIO_010081: OTUD7B
subclass of: SO_0000673
so part of: OTUD7B
location: join(29023..30337,31241..31368,33240..33352,33747..33874,34486..34635,34918..35032,36017..36101,36901..39427)
location: region:29023-39427:1
so has part: feature:29023-30337:1:exon
so has part: feature:31241-31368:1:exon
so has part: feature:33240-33352:1:exon
so has part: feature:33747-33874:1:exon
so has part: feature:34486-34635:1:exon
so has part: feature:34918-35032:1:exon
so has part: feature:36017-36101:1:exon
so has part: feature:36901-39427:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:29023-30337:1:exon

position:30337:1
position: 30337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:31241-31368:1:exon

position:31241:1
position: 31241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31368:1
position: 31368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:33240-33352:1:exon

position:33240:1
position: 33240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33352:1
position: 33352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:33747-33874:1:exon

position:33747:1
position: 33747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33874:1
position: 33874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:34486-34635:1:exon

position:34486:1
position: 34486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34635:1
position: 34635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:34918-35032:1:exon

position:34918:1
position: 34918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35032:1
position: 35032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:36017-36101:1:exon

position:36017:1
position: 36017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36101:1
position: 36101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:36901-39427:1:exon

position:36901:1
position: 36901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

OTUD7B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: OTUD7B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: OTU domain-containing protein 7B
translation: MLSNVPPGRLNWWANVDPSCQRLLPLATTGDGNCLLHAASLGMWGFHDRDLVLRKSLYTLMDKGVEREALKRRWRWQQTQQNKESGLVYTEEEWQKEWNELIKLASSEPRVHYGTNGGGCGGVESSEEPVYESLEEFHVFVLAHVLKRPIVVVADTMLRDSGGEAFAPIPFGGIYLPLEVPANKCHRSPLVLAYDQAHFSALVSMEQKEPTTDQAVIPLTDSEHKLLPVHFAVDPGKDWQWGKDDSDNVKLASVTLSLEAKLHLLHSYMNVKWITLPCDTQAPLAQPESPTASAGDDARSAVESGESDKESVCSSSASNGGSRGCKDKEKPKKDREKDKEKDKKRADSVANKLGSFGKTLGSKLKKNMGGLMHSKTIKGGVSNGQGDTLEKKKKGSLKTRKGSKEESSQGDLSVPGEKSCVGKAASEKPSDPYKYSNDVRLSLSILRAAMQGERKFIFAGHLKTGHRHQYQEEMIQQYLLDAEERFLAEQKQKEAEKKALGSAAPAKKLEVEVRGEEALHGPVYPQPPPAYAIHAPDLAIGAKMAAFPSSYSGVFTFPRPSVVSGSAEGSHPPSYHEGRRQVAGGSCSSLPPYATLPRHCAQARPPPSHVGRFSPTDTDVHPSFPTECEAPACVPPQHSNGYREYLEQDSPQKGAPADKTRGRVLYSVQQTKCKQPNCSFYGHPETGNFCSCCYKEELKRKEREALVHRF
SIO_010081: OTUD7B
subclass of: SO_0000673
so part of: OTUD7B
location: join(30214..30337,31241..31368,33240..33352,33747..33874,34486..34635,34918..35032,36017..36101,36901..38190)
location: region:30214-38190:1
so has part: feature:30214-30337:1:exon
so has part: feature:31241-31368:1:exon
so has part: feature:33240-33352:1:exon
so has part: feature:33747-33874:1:exon
so has part: feature:34486-34635:1:exon
so has part: feature:34918-35032:1:exon
so has part: feature:36017-36101:1:exon
so has part: feature:36901-38190:1:exon

XP_031412780.1
type: Protein
SIO_000068: ncbiprotein

position:30214:1
position: 30214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38190:1
position: 38190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30214-30337:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:31241-31368:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:33240-33352:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:33747-33874:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:34486-34635:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:34918-35032:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:36017-36101:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:36901-38190:1:exon

LOC104914394
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914394
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 44785..49142
location: region:44785-49142:1
so has part: feature:44785-49142:1:exon
subclass of: SO_0000010

104914394
type: Gene
SIO_000068: ncbigene

position:44785:1
position: 44785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49142:1
position: 49142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44785-49142:1:exon

LOC104914394
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914394
product: OTU domain-containing protein 7B-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_010723826.3
SIO_010081: LOC104914394
subclass of: SO_0000673
so part of: LOC104914394
location: join(44785..44993,45815..46030,48833..49142)
location: region:44785-49142:1
so has part: feature:44785-44993:1:exon
so has part: feature:45815-46030:1:exon
so has part: feature:48833-49142:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:44785-44993:1:exon

position:44993:1
position: 44993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:45815-46030:1:exon

position:45815:1
position: 45815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46030:1
position: 46030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:48833-49142:1:exon

position:48833:1
position: 48833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC104914394
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914394
product: OTU domain-containing protein 7B-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 59 samples with support for all annotated introns
transcript id: XM_010723827.3
SIO_010081: LOC104914394
subclass of: SO_0000673
so part of: LOC104914394
location: join(44789..44993,45815..46030,46198..46990)
location: region:44789-46990:1
so has part: feature:44789-44993:1:exon
so has part: feature:45815-46030:1:exon
so has part: feature:46198-46990:1:exon

position:44789:1
position: 44789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46990:1
position: 46990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44789-44993:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:45815-46030:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:46198-46990:1:exon

position:46198:1
position: 46198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC104914394
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914394
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: OTU domain-containing protein 7B-like isoform X1
translation: MPSNPGKNWDLSAALSDFEQLRQVHAGNLPHSFNEGRSYKPPEKEAARPGRPPLQRQDDIVQEKRLSRGISHASSTIVSLARSHVSSNGSSEHLLEMPISTFQLPDLTVYTEEFRSFIERDLIEQSMLVALEQAGGDPTPSPPGDSAGGEKCVLQQLHKHIGGC
SIO_010081: LOC104914394
subclass of: SO_0000673
so part of: LOC104914394
location: join(44807..44993,45815..46030,48833..48924)
location: region:44807-48924:1
so has part: feature:44807-44993:1:exon
so has part: feature:45815-46030:1:exon
so has part: feature:48833-48924:1:exon

XP_010722128.1
type: Protein
SIO_000068: ncbiprotein

position:44807:1
position: 44807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48924:1
position: 48924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44807-44993:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:45815-46030:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:48833-48924:1:exon

LOC104914394
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914394
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: OTU domain-containing protein 7B-like isoform X2
translation: MPSNPGKNWDLSAALSDFEQLRQVHAGNLPHSFNEGRSYKPPEKEAARPGRPPLQRQDDIVQEKRLSRGISHASSTIVSLARSHVSSNGSSEHLLEMPISTFQLPDLTVYTEEFRSFIERDLIEQSMLVALEQAAWRKS
SIO_010081: LOC104914394
subclass of: SO_0000673
so part of: LOC104914394
location: join(44807..44993,45815..46030,46198..46214)
location: region:44807-46214:1
so has part: feature:44807-44993:1:exon
so has part: feature:45815-46030:1:exon
so has part: feature:46198-46214:1:exon

XP_010722129.1
type: Protein
SIO_000068: ncbiprotein

position:46214:1
position: 46214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44807-44993:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:45815-46030:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:46198-46214:1:exon

ANP32E
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: ANP32E
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 84208..94272
location: region:84208-94272:1
so has part: feature:84208-94272:1:exon
subclass of: SO_0000010

100551182
type: Gene
SIO_000068: ncbigene

position:84208:1
position: 84208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:94272:1
position: 94272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84208-94272:1:exon

ANP32E
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: ANP32E
product: acidic nuclear phosphoprotein 32 family member E, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 211 samples with support for all annotated introns
transcript id: XM_003212772.4
SIO_010081: ANP32E
subclass of: SO_0000673
so part of: ANP32E
location: join(84208..84383,85020..85142,86412..86577,88034..88188,89289..89343,90926..94272)
location: region:84208-94272:1
so has part: feature:84208-84383:1:exon
so has part: feature:85020-85142:1:exon
so has part: feature:86412-86577:1:exon
so has part: feature:88034-88188:1:exon
so has part: feature:89289-89343:1:exon
so has part: feature:90926-94272:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:84208-84383:1:exon

position:84383:1
position: 84383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:85020-85142:1:exon

position:85020:1
position: 85020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:85142:1
position: 85142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:86412-86577:1:exon

position:86412:1
position: 86412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:86577:1
position: 86577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:88034-88188:1:exon

position:88034:1
position: 88034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:88188:1
position: 88188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:89289-89343:1:exon

position:89289:1
position: 89289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:89343:1
position: 89343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:90926-94272:1:exon

position:90926:1
position: 90926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ANP32E
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: ANP32E
product: acidic nuclear phosphoprotein 32 family member E, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 222 samples with support for all annotated introns
transcript id: XM_010723828.3
SIO_010081: ANP32E
subclass of: SO_0000673
so part of: ANP32E
location: join(84210..84383,85020..85142,86412..86577,88034..88188,89289..89343,90929..94272)
location: region:84210-94272:1
so has part: feature:84210-84383:1:exon
so has part: feature:85020-85142:1:exon
so has part: feature:86412-86577:1:exon
so has part: feature:88034-88188:1:exon
so has part: feature:89289-89343:1:exon
so has part: feature:90929-94272:1:exon

position:84210:1
position: 84210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84210-84383:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:85020-85142:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:86412-86577:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:88034-88188:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:89289-89343:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:90929-94272:1:exon

position:90929:1
position: 90929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ANP32E
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: ANP32E
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X1
translation: MANVQLTSLAKLPTLSKLRKLELSDNIISGGLEVLAERCPNLTYLNLSGNKIKDLGTVEALQNLKNLKSLDLFNCEITNLEDYRDSIFDLLQQITYLDGFDQEDNEAPDSEDDDDEGDEDDNDEDEDEAGPPGEYEEEDDEDDGGSDLGEGEEEEEVGLSYLMKEEIQDEDDDDDYVEEGGDEEEEAEGVRGEKRKRDPEDEGEEEDD
SIO_010081: ANP32E
subclass of: SO_0000673
so part of: ANP32E
location: join(84324..84383,85020..85142,86412..86577,88034..88188,89289..89343,90926..90993)
location: region:84324-90993:1
so has part: feature:84324-84383:1:exon
so has part: feature:85020-85142:1:exon
so has part: feature:86412-86577:1:exon
so has part: feature:88034-88188:1:exon
so has part: feature:89289-89343:1:exon
so has part: feature:90926-90993:1:exon

XP_003212820.2
type: Protein
SIO_000068: ncbiprotein

position:84324:1
position: 84324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:90993:1
position: 90993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84324-84383:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:85020-85142:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:86412-86577:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:88034-88188:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:89289-89343:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:90926-90993:1:exon

ANP32E
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: ANP32E
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X2
translation: MANVQLTSLAKLPTLSKLRKLELSDNIISGGLEVLAERCPNLTYLNLSGNKIKDLGTVEALQNLKNLKSLDLFNCEITNLEDYRDSIFDLLQQITYLDGFDQEDNEAPDSEDDDDEGDEDDNDEDEDEAGPPGEYEEEDDEDDGGSDLGEGEEEEEVGLSYLMKEEIQDEDDDDDYVEEGGDEEEEEGVRGEKRKRDPEDEGEEEDD
SIO_010081: ANP32E
subclass of: SO_0000673
so part of: ANP32E
location: join(84324..84383,85020..85142,86412..86577,88034..88188,89289..89343,90929..90993)
location: region:84324-90993:1
so has part: feature:84324-84383:1:exon
so has part: feature:85020-85142:1:exon
so has part: feature:86412-86577:1:exon
so has part: feature:88034-88188:1:exon
so has part: feature:89289-89343:1:exon
so has part: feature:90929-90993:1:exon

XP_010722130.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:84324-84383:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:85020-85142:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:86412-86577:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:88034-88188:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:89289-89343:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:90929-90993:1:exon

PLEKHO1
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: PLEKHO1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(115288..131085)
location: region:115288-131085:-1
so has part: feature:115288-131085:-1:exon
subclass of: SO_0000010

100550260
type: Gene
SIO_000068: ncbigene

position:115288:-1
position: 115288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:131085:-1
position: 131085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:115288-131085:-1:exon

PLEKHO1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: PLEKHO1
product: pleckstrin homology domain containing O1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 173 samples with support for all annotated introns
transcript id: XM_010723829.3
SIO_010081: PLEKHO1
subclass of: SO_0000673
so part of: PLEKHO1
location: complement(join(115288..120774,121361..121462,122486..122590,123543..123683,129898..130035,130713..131085))
location: region:115288-131085:-1
so has part: feature:130713-131085:-1:exon
so has part: feature:129898-130035:-1:exon
so has part: feature:123543-123683:-1:exon
so has part: feature:122486-122590:-1:exon
so has part: feature:121361-121462:-1:exon
so has part: feature:115288-120774:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:130713-131085:-1:exon

position:130713:-1
position: 130713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:129898-130035:-1:exon

position:129898:-1
position: 129898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:130035:-1
position: 130035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:123543-123683:-1:exon

position:123543:-1
position: 123543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:123683:-1
position: 123683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:122486-122590:-1:exon

position:122486:-1
position: 122486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:122590:-1
position: 122590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:121361-121462:-1:exon

position:121361:-1
position: 121361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:121462:-1
position: 121462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:115288-120774:-1:exon

position:120774:-1
position: 120774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PLEKHO1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: PLEKHO1
product: pleckstrin homology domain containing O1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 208 samples with support for all annotated introns
transcript id: XM_003212767.4
SIO_010081: PLEKHO1
subclass of: SO_0000673
so part of: PLEKHO1
location: complement(join(115288..120774,121361..121462,122486..122590,123543..123683,129898..130044,130713..131080))
location: region:115288-131080:-1
so has part: feature:130713-131080:-1:exon
so has part: feature:129898-130044:-1:exon
so has part: feature:123543-123683:-1:exon
so has part: feature:122486-122590:-1:exon
so has part: feature:121361-121462:-1:exon
so has part: feature:115288-120774:-1:exon

position:131080:-1
position: 131080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:130713-131080:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:129898-130044:-1:exon

position:130044:-1
position: 130044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:123543-123683:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:122486-122590:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:121361-121462:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:115288-120774:-1:exon

PLEKHO1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: PLEKHO1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pleckstrin homology domain-containing family O member 1 isoform X2
translation: MKKNNSAKRDGNQQSAQPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEVKDEKNVQETFDLSDYEKCEELRKSKSRSKKNHSKFTLAHSRQPGNMAPNLIFLAVSPEEKESWINALNSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTSTSDGMLTLDLIQEEDASPEEHSTCEESFRVDLDKSVAQLAAGRRRSESENVRALEKGHTGSLPRRDVTSWDRPAQCKDSLDKGTVYTPQVPKKLSHSEKNKCASMEEILSRRDSAHRAALRRGLEAHCTAAEPEQLSRLQELVALKLEKTQELLTEVKGYGEGKRKVKDCTAGTTTTSSSSSSSSSRLDCERILQESERLLGEASSTWSQARRVLQEVRELRDLYRQIELQQVDCNPKQSSQYRKSMM
SIO_010081: PLEKHO1
subclass of: SO_0000673
so part of: PLEKHO1
location: complement(join(120016..120774,121361..121462,122486..122590,123543..123683,129898..130035,130713..130739))
location: region:120016-130739:-1
so has part: feature:130713-130739:-1:exon
so has part: feature:129898-130035:-1:exon
so has part: feature:123543-123683:-1:exon
so has part: feature:122486-122590:-1:exon
so has part: feature:121361-121462:-1:exon
so has part: feature:120016-120774:-1:exon

XP_010722131.1
type: Protein
SIO_000068: ncbiprotein

position:120016:-1
position: 120016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:130739:-1
position: 130739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:130713-130739:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:129898-130035:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:123543-123683:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:122486-122590:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:121361-121462:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:120016-120774:-1:exon

PLEKHO1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: PLEKHO1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pleckstrin homology domain-containing family O member 1 isoform X1
translation: MKKNNSAKRGQQDGNQQSAQPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEVKDEKNVQETFDLSDYEKCEELRKSKSRSKKNHSKFTLAHSRQPGNMAPNLIFLAVSPEEKESWINALNSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTSTSDGMLTLDLIQEEDASPEEHSTCEESFRVDLDKSVAQLAAGRRRSESENVRALEKGHTGSLPRRDVTSWDRPAQCKDSLDKGTVYTPQVPKKLSHSEKNKCASMEEILSRRDSAHRAALRRGLEAHCTAAEPEQLSRLQELVALKLEKTQELLTEVKGYGEGKRKVKDCTAGTTTTSSSSSSSSSRLDCERILQESERLLGEASSTWSQARRVLQEVRELRDLYRQIELQQVDCNPKQSSQYRKSMM
SIO_010081: PLEKHO1
subclass of: SO_0000673
so part of: PLEKHO1
location: complement(join(120016..120774,121361..121462,122486..122590,123543..123683,129898..130044,130713..130739))
location: region:120016-130739:-1
so has part: feature:130713-130739:-1:exon
so has part: feature:129898-130044:-1:exon
so has part: feature:123543-123683:-1:exon
so has part: feature:122486-122590:-1:exon
so has part: feature:121361-121462:-1:exon
so has part: feature:120016-120774:-1:exon

XP_003212815.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:130713-130739:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:129898-130044:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:123543-123683:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:122486-122590:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:121361-121462:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:120016-120774:-1:exon

VPS45
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: VPS45
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(135744..162110)
location: region:135744-162110:-1
so has part: feature:135744-162110:-1:exon
subclass of: SO_0000010

100551335
type: Gene
SIO_000068: ncbigene

position:135744:-1
position: 135744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:162110:-1
position: 162110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:135744-162110:-1:exon

VPS45
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: VPS45
product: vacuolar protein sorting 45 homolog
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 222 samples with support for all annotated introns
transcript id: XM_010723830.2
SIO_010081: VPS45
subclass of: SO_0000673
so part of: VPS45
location: complement(join(135744..136191,143271..143402,149648..149769,150565..150672,151375..151533,155046..155213,155863..155976,156367..156501,157765..157875,158261..158398,158693..158761,159199..159278,161833..161893,161970..162110))
location: region:135744-162110:-1
so has part: feature:161970-162110:-1:exon
so has part: feature:161833-161893:-1:exon
so has part: feature:159199-159278:-1:exon
so has part: feature:158693-158761:-1:exon
so has part: feature:158261-158398:-1:exon
so has part: feature:157765-157875:-1:exon
so has part: feature:156367-156501:-1:exon
so has part: feature:155863-155976:-1:exon
so has part: feature:155046-155213:-1:exon
so has part: feature:151375-151533:-1:exon
so has part: feature:150565-150672:-1:exon
so has part: feature:149648-149769:-1:exon
so has part: feature:143271-143402:-1:exon
so has part: feature:135744-136191:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:161970-162110:-1:exon

position:161970:-1
position: 161970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:161833-161893:-1:exon

position:161833:-1
position: 161833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:161893:-1
position: 161893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:159199-159278:-1:exon

position:159199:-1
position: 159199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:159278:-1
position: 159278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:158693-158761:-1:exon

position:158693:-1
position: 158693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:158761:-1
position: 158761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:158261-158398:-1:exon

position:158261:-1
position: 158261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:158398:-1
position: 158398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:157765-157875:-1:exon

position:157765:-1
position: 157765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:157875:-1
position: 157875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:156367-156501:-1:exon

position:156367:-1
position: 156367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:156501:-1
position: 156501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:155863-155976:-1:exon

position:155863:-1
position: 155863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:155976:-1
position: 155976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:155046-155213:-1:exon

position:155046:-1
position: 155046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:155213:-1
position: 155213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:151375-151533:-1:exon

position:151375:-1
position: 151375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:151533:-1
position: 151533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:150565-150672:-1:exon

position:150565:-1
position: 150565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:150672:-1
position: 150672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:149648-149769:-1:exon

position:149648:-1
position: 149648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:149769:-1
position: 149769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:143271-143402:-1:exon

position:143271:-1
position: 143271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:143402:-1
position: 143402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:135744-136191:-1:exon

position:136191:-1
position: 136191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

VPS45
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: VPS45
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: vacuolar protein sorting-associated protein 45
translation: MVYTQSEILQKEVYLFERIDSPGREPMKHLKAVCFLRPTKENVHCLIQELRRPKYSIYYIYFSNVISKSDIKALAEADEQEVVAEIQEFYGDYIAVNPHVFSLNLLGCCQGRNWDPAQLSRTTQGLTALLLSLKKCPMIRYQLSSEPAKRLAECVKQVITKEYELFDFRRTEVPPLLLILDRSDDAITPLLNQWTYQAMVHELLGINNNRVDLSRVPGISKDLREVVLSAENDEFYANNMYLNFAEIGSNIKNLMEDFQKRKPKEQQKLESIADMKAFVENYPQFKKMSGTVSKHVTVVGELSRLVGERNLLEVSEVEQELACHNDHSSALQNVRRLLQNPKVTELDAARLVMLYALHYERHSSNSLPGLMADLKNRGVSERYRKLVSAVVEYGGKRVRGSDLFSPKDAVAITKQFLKGLKGVENVYTQHQPLLQETLDQLIKGKLKDSQYPYLGPNTLRDRPQDIIVFIIGGATYEEALTVYNLNRTNPGVRIVLGGTTIHNTRSFLEEVTASGFRGRSTESSHAVPRPSSRR
SIO_010081: VPS45
subclass of: SO_0000673
so part of: VPS45
location: complement(join(136104..136191,143271..143402,149648..149769,150565..150672,151375..151533,155046..155213,155863..155976,156367..156501,157765..157875,158261..158398,158693..158761,159199..159278,161833..161893,161970..162089))
location: region:136104-162089:-1
so has part: feature:161970-162089:-1:exon
so has part: feature:161833-161893:-1:exon
so has part: feature:159199-159278:-1:exon
so has part: feature:158693-158761:-1:exon
so has part: feature:158261-158398:-1:exon
so has part: feature:157765-157875:-1:exon
so has part: feature:156367-156501:-1:exon
so has part: feature:155863-155976:-1:exon
so has part: feature:155046-155213:-1:exon
so has part: feature:151375-151533:-1:exon
so has part: feature:150565-150672:-1:exon
so has part: feature:149648-149769:-1:exon
so has part: feature:143271-143402:-1:exon
so has part: feature:136104-136191:-1:exon

XP_010722132.1
type: Protein
SIO_000068: ncbiprotein

position:136104:-1
position: 136104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:162089:-1
position: 162089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:161970-162089:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:161833-161893:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:159199-159278:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:158693-158761:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:158261-158398:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:157765-157875:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:156367-156501:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:155863-155976:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:155046-155213:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:151375-151533:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:150565-150672:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:149648-149769:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:143271-143402:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:136104-136191:-1:exon

LOC104914398
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914398
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 167926..172351
location: region:167926-172351:1
so has part: feature:167926-172351:1:exon
subclass of: SO_0000010

104914398
type: Gene
SIO_000068: ncbigene

position:167926:1
position: 167926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:172351:1
position: 172351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:167926-172351:1:exon

LOC104914398
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914398
product: nucleoporin NUP42-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_019623099.2
SIO_010081: LOC104914398
subclass of: SO_0000673
so part of: LOC104914398
location: join(167926..169387,169778..169872,170198..170274,170823..170909,171375..171459,171885..172351)
location: region:167926-172351:1
so has part: feature:167926-169387:1:exon
so has part: feature:169778-169872:1:exon
so has part: feature:170198-170274:1:exon
so has part: feature:170823-170909:1:exon
so has part: feature:171375-171459:1:exon
so has part: feature:171885-172351:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:167926-169387:1:exon

position:169387:1
position: 169387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:169778-169872:1:exon

position:169778:1
position: 169778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:169872:1
position: 169872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:170198-170274:1:exon

position:170198:1
position: 170198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:170274:1
position: 170274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:170823-170909:1:exon

position:170823:1
position: 170823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:170909:1
position: 170909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:171375-171459:1:exon

position:171375:1
position: 171375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:171459:1
position: 171459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:171885-172351:1:exon

position:171885:1
position: 171885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC104914398
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914398
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nucleoporin NUP42-like
translation: MIQHTEGAVGGLGDATQIDTNLSQPAAIQHTEGAVGGSGDATQIDTNLSQPPVIQHMEGAVGGLGDATQIDTNLSQPPVIQHMEGAVGGLGDATQIDTNLSQPPVIQHTRGEGGGRVPRARRAINLLRPDLFLCKGGAAGGRGAPTAVVQPPVCAKSKSSGSRDGGGLSGASGSGPAGKKSAVSSQKAPSALSSAAPGDGQRDGQQRLLDCAAKDMATSESSGQWVFSCYSPVAGKPSASGFREISPEEGRLEYYNCRAKESTGYYTNTVGHYVQQWRNKLQELKALNASGKASMPSQRKNAVTQALPSLGLGGQQAPSAGFPSAGTAKAATGTSHSSASSASAAQTAGASGHDATSAPPAFPHGIRPGQLCSPRGESTAEELEQFKAKKFTPGKVPQKPPLADLLHGLPCNLM
SIO_010081: LOC104914398
subclass of: SO_0000673
so part of: LOC104914398
location: join(168762..169387,169778..169872,170198..170274,170823..170909,171375..171459,171885..172159)
location: region:168762-172159:1
so has part: feature:168762-169387:1:exon
so has part: feature:169778-169872:1:exon
so has part: feature:170198-170274:1:exon
so has part: feature:170823-170909:1:exon
so has part: feature:171375-171459:1:exon
so has part: feature:171885-172159:1:exon

XP_019478644.1
type: Protein
SIO_000068: ncbiprotein

position:168762:1
position: 168762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:172159:1
position: 172159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:168762-169387:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:169778-169872:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:170198-170274:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:170823-170909:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:171375-171459:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:171885-172159:1:exon

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 9103
estimated length: unknown
gap type: between scaffolds
so part of: sequence
location: 183376..183475
location: region:183376-183475:1
so has part: feature:183376-183475:1:region

position:183376:1
position: 183376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:183475:1
position: 183475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:183376-183475:1:region

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 9103
estimated length: unknown
gap type: between scaffolds
so part of: sequence
location: 184581..184680
location: region:184581-184680:1
so has part: feature:184581-184680:1:region

position:184581:1
position: 184581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:184680:1
position: 184680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:184581-184680:1:region

LOC100550475
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC100550475
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 189330..192562
location: region:189330-192562:1
so has part: feature:189330-192562:1:exon
subclass of: SO_0000010

100550475
type: Gene
SIO_000068: ncbigene

position:189330:1
position: 189330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:192562:1
position: 192562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189330-192562:1:exon

LOC100550475
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC100550475
product: ETS translocation variant 3-like protein
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns
transcript id: XM_031556921.1
SIO_010081: LOC100550475
subclass of: SO_0000673
so part of: LOC100550475
location: join(189330..189770,190257..190325,190506..190743,191252..191408,191491..191593,191907..192562)
location: region:189330-192562:1
so has part: feature:189330-189770:1:exon
so has part: feature:190257-190325:1:exon
so has part: feature:190506-190743:1:exon
so has part: feature:191252-191408:1:exon
so has part: feature:191491-191593:1:exon
so has part: feature:191907-192562:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:189330-189770:1:exon

position:189770:1
position: 189770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:190257-190325:1:exon

position:190257:1
position: 190257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:190325:1
position: 190325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:190506-190743:1:exon

position:190506:1
position: 190506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:190743:1
position: 190743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:191252-191408:1:exon

position:191252:1
position: 191252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:191408:1
position: 191408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:191491-191593:1:exon

position:191491:1
position: 191491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:191593:1
position: 191593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:191907-192562:1:exon

position:191907:1
position: 191907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100550475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC100550475
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: ETS translocation variant 3-like protein
translation: MLPLCPSRNFLLPARGKKIYSLPIPSLYIWRWFSLRPSDVFSCSCPCATAWDRVPNVATGCSMQCGCVTPGLPALPGSYWVPGLAFPDWAYKAESSPGSRQIQLWHFILELLQKEEFRHVIAWQQGEYGEFVIKDPDEVARLWGRRKCKPQMNYDKLSRALRYYYNKRILHKTKGKRFTYKFNFSKLIFVNCPLWDLRCPPLLAGTVPPALPSQLLQNALLSRRALAEPLGWHRGPRHPLLPEAPEKSRLSTVSPPCLGGSCCRLGGPEDFPRLAAFPCPLLPDVFPPVLSGPFGPFSLRPLRSPPASRERRAPFPVPRHPHPPPHHSASLAPHRLGTAPPPTLGLPKSEPFSLGPRCXPGLLGGHAMAGGGLTGEQPREDGEEEEEEVDEGRRGTAMVQRVKLQLEGREKGSSGLSPASFTPPQPPGWPLQPP
SIO_010081: LOC100550475
subclass of: SO_0000673
so part of: LOC100550475
location: join(189593..189770,190257..190325,190506..190743,191252..191408,191491..191593,191907..192466)
location: region:189593-192466:1
so has part: feature:189593-189770:1:exon
so has part: feature:190257-190325:1:exon
so has part: feature:190506-190743:1:exon
so has part: feature:191252-191408:1:exon
so has part: feature:191491-191593:1:exon
so has part: feature:191907-192466:1:exon

XP_031412781.1
type: Protein
SIO_000068: ncbiprotein

position:189593:1
position: 189593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:192466:1
position: 192466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189593-189770:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:190257-190325:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:190506-190743:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:191252-191408:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:191491-191593:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:191907-192466:1:exon

ARHGEF11
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: ARHGEF11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 199961..214152
location: region:199961-214152:1
so has part: feature:199961-214152:1:exon
subclass of: SO_0000010

100541399
type: Gene
SIO_000068: ncbigene

position:199961:1
position: 199961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:214152:1
position: 214152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:199961-214152:1:exon

ARHGEF11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: ARHGEF11
product: Rho guanine nucleotide exchange factor 11
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 189 samples with support for all annotated introns
transcript id: XM_019623101.2
SIO_010081: ARHGEF11
subclass of: SO_0000673
so part of: ARHGEF11
location: join(199961..199992,200359..200457,201489..201538,201617..201674,201957..202135,202232..202303,202638..202757,203005..203059,203151..203227,203680..203817,203940..204014,204407..204508,204883..204981,205510..205552,205642..205738,205819..205941,206156..206179,206560..206704,206835..206931,207415..207444,207693..207822,207930..208109,208503..208550,209056..209243,209322..209468,209739..209818,210082..210207,210302..210419,210643..210821,210895..210970,211137..211304,211408..211495,211597..211698,211890..211972,212047..212253,212333..212605,212999..213091,213345..213543,213643..213829,214090..214152)
location: region:199961-214152:1
so has part: feature:199961-199992:1:exon
so has part: feature:200359-200457:1:exon
so has part: feature:201489-201538:1:exon
so has part: feature:201617-201674:1:exon
so has part: feature:201957-202135:1:exon
so has part: feature:202232-202303:1:exon
so has part: feature:202638-202757:1:exon
so has part: feature:203005-203059:1:exon
so has part: feature:203151-203227:1:exon
so has part: feature:203680-203817:1:exon
so has part: feature:203940-204014:1:exon
so has part: feature:204407-204508:1:exon
so has part: feature:204883-204981:1:exon
so has part: feature:205510-205552:1:exon
so has part: feature:205642-205738:1:exon
so has part: feature:205819-205941:1:exon
so has part: feature:206156-206179:1:exon
so has part: feature:206560-206704:1:exon
so has part: feature:206835-206931:1:exon
so has part: feature:207415-207444:1:exon
so has part: feature:207693-207822:1:exon
so has part: feature:207930-208109:1:exon
so has part: feature:208503-208550:1:exon
so has part: feature:209056-209243:1:exon
so has part: feature:209322-209468:1:exon
so has part: feature:209739-209818:1:exon
so has part: feature:210082-210207:1:exon
so has part: feature:210302-210419:1:exon
so has part: feature:210643-210821:1:exon
so has part: feature:210895-210970:1:exon
so has part: feature:211137-211304:1:exon
so has part: feature:211408-211495:1:exon
so has part: feature:211597-211698:1:exon
so has part: feature:211890-211972:1:exon
so has part: feature:212047-212253:1:exon
so has part: feature:212333-212605:1:exon
so has part: feature:212999-213091:1:exon
so has part: feature:213345-213543:1:exon
so has part: feature:213643-213829:1:exon
so has part: feature:214090-214152:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:199961-199992:1:exon

position:199992:1
position: 199992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:200359-200457:1:exon

position:200359:1
position: 200359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:200457:1
position: 200457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:201489-201538:1:exon

position:201489:1
position: 201489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:201538:1
position: 201538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:201617-201674:1:exon

position:201617:1
position: 201617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:201674:1
position: 201674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:201957-202135:1:exon

position:201957:1
position: 201957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:202135:1
position: 202135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:202232-202303:1:exon

position:202232:1
position: 202232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:202303:1
position: 202303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:202638-202757:1:exon

position:202638:1
position: 202638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:202757:1
position: 202757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:203005-203059:1:exon

position:203005:1
position: 203005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:203059:1
position: 203059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:203151-203227:1:exon

position:203151:1
position: 203151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:203227:1
position: 203227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:203680-203817:1:exon

position:203680:1
position: 203680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:203817:1
position: 203817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:203940-204014:1:exon

position:203940:1
position: 203940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:204014:1
position: 204014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:204407-204508:1:exon

position:204407:1
position: 204407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:204508:1
position: 204508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:204883-204981:1:exon

position:204883:1
position: 204883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:204981:1
position: 204981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:205510-205552:1:exon

position:205510:1
position: 205510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:205552:1
position: 205552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:205642-205738:1:exon

position:205642:1
position: 205642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:205738:1
position: 205738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:205819-205941:1:exon

position:205819:1
position: 205819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:205941:1
position: 205941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:206156-206179:1:exon

position:206156:1
position: 206156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:206179:1
position: 206179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:206560-206704:1:exon

position:206560:1
position: 206560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:206704:1
position: 206704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:206835-206931:1:exon

position:206835:1
position: 206835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:206931:1
position: 206931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:207415-207444:1:exon

position:207415:1
position: 207415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:207444:1
position: 207444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:207693-207822:1:exon

position:207693:1
position: 207693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:207822:1
position: 207822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:207930-208109:1:exon

position:207930:1
position: 207930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:208109:1
position: 208109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:208503-208550:1:exon

position:208503:1
position: 208503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:208550:1
position: 208550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:209056-209243:1:exon

position:209056:1
position: 209056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:209243:1
position: 209243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:209322-209468:1:exon

position:209322:1
position: 209322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:209468:1
position: 209468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:209739-209818:1:exon

position:209739:1
position: 209739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:209818:1
position: 209818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:210082-210207:1:exon

position:210082:1
position: 210082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210207:1
position: 210207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:210302-210419:1:exon

position:210302:1
position: 210302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210419:1
position: 210419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:210643-210821:1:exon

position:210643:1
position: 210643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210821:1
position: 210821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:210895-210970:1:exon

position:210895:1
position: 210895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210970:1
position: 210970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:211137-211304:1:exon

position:211137:1
position: 211137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211304:1
position: 211304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:211408-211495:1:exon

position:211408:1
position: 211408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211495:1
position: 211495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:211597-211698:1:exon

position:211597:1
position: 211597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211698:1
position: 211698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:211890-211972:1:exon

position:211890:1
position: 211890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211972:1
position: 211972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 35
SIO_000628: feature:212047-212253:1:exon

position:212047:1
position: 212047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:212253:1
position: 212253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 36
SIO_000628: feature:212333-212605:1:exon

position:212333:1
position: 212333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:212605:1
position: 212605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 37
SIO_000628: feature:212999-213091:1:exon

position:212999:1
position: 212999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:213091:1
position: 213091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 38
SIO_000628: feature:213345-213543:1:exon

position:213345:1
position: 213345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:213543:1
position: 213543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 39
SIO_000628: feature:213643-213829:1:exon

position:213643:1
position: 213643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:213829:1
position: 213829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 40
SIO_000628: feature:214090-214152:1:exon

position:214090:1
position: 214090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ARHGEF11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: ARHGEF11
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: rho guanine nucleotide exchange factor 11
translation: MKAGVQEGDRIVKVNGTMVTNSSHLEVVKLIKSGAYVALTLLGSPPPSVGLSNSQQDMSMTGAPRNAPACPPPPPPPPLPPPQRITGPKPLQDPEVQKHATQILRNMLRQEEAELQRFYEAYNRNPGTVVGEQIEGARRRVSQLQLKIRQETSGSVDLGRLCGDSSMAMFRAAEGRLSLDSQDGDSGLESGTERFPSVSEISLNRNSVLSDHGLDSPRTSPVITARLFQHHRRQGSDTTFIPTTEQGSERTGRPLIIGPEEDYDPGYFNNECDSLFQDLGKLKSRPAHLGVFLRYIFSQADPSPLLFYLCADVCQQTTAKDSRGLGKDIWNIFLDRNAPLRVKVSEQLLAEIEARLRNGDDVRAALFEAQEMVMPEIQEQIQDYRTKRTMGLGSLYGENDLLDLDGDPQKERQVAEKQLAQLGDILSKYEEDRSSPMAFALSTYMNHTGIRSREPRVASTSEKAQALPDKDKWLPFFPKTKKQSSSTKKDKDAMEDKKRNPILKYIAKPKMSQSTFHVPLSPVEAVKPGNVRNIIQHFENNQHYESQEPGSQRLSTGSFPEDLLEGDGSRAEVKLGRSESLKGREEMKKSRKAENVPRSRSDVDMDAAAEATRLHQSASSSASSLSTRSLENPTPPYTPKMGRRSIESPSLGFGADPFLPHLLEDEQGQLSDLEPELDSQNWQHTVGRELLASLPQKEIDRQEVINELFATEGSHLRILRVLDLLFYQRMRKESLLSREELALLFPNLPDVIEIHNSLSESMKKLREEGPIIKEIGDLMLSRFDGLAKEEIQQVTADFCSYQSIALELIKTKQRKETRFQIFMQEAESNPQCRRLQLKDLIISEMQRLTKYPLLLENILKHTEAGTSEHDKLCRARDQCRDILKYVNEAVKQAENRHRLEGYQKRLDATSLERTSNPLAAEFKSLDLTSRRMIHEGPLTWRISKDKTVDLHVLLLEDLLVLLQKQDEKLVLKCHGKTALGSLDNKQTFSPVLKLNSVLIRSVATDKRAFFIICTSELGPQIYELVALTSSEKNTWMEVLEEAVQSAMRNATFPPKRQMPEPTRMAPSSLVLQDPDVSPILSQVSSSAAEVEESSSADDNPTELLGREQPPVLLEEPESSEVEEEELPAGSLHTEVSDALPEPSMRLALPVPSPAEGLAEAALEDVENLRLLILRRLLPSRDTEPEDDLTPTPSVIGGTHTWDSVLSSQDSASQEVLAEPPSAAEEPKPRLGWEEQSERGPTVSAEEQSSLKVVRKAPAEGAQEATPSPGSSQSETELQEGGGANVDGNYFYVSMPTGPPESAPPPGPPQAIQPEEPPXPNTAECPPDPPGPLHDVDLIFRTIEQLTLKLNRLKAVEAAHRELLRSLGHSSSADTTPVGLPAPGMEGWSQRPHSPEADSPLTRSLRSLQGHSTNIPGCRAPLAEDPAHTADL
SIO_010081: ARHGEF11
subclass of: SO_0000673
so part of: ARHGEF11
location: join(201500..201538,201617..201674,201957..202135,202232..202303,202638..202757,203005..203059,203151..203227,203680..203817,203940..204014,204407..204508,204883..204981,205510..205552,205642..205738,205819..205941,206156..206179,206560..206704,206835..206931,207415..207444,207693..207822,207930..208109,208503..208550,209056..209243,209322..209468,209739..209818,210082..210207,210302..210419,210643..210821,210895..210970,211137..211304,211408..211495,211597..211698,211890..211972,212047..212253,212333..212605,212999..213091,213345..213543,213643..213829,214090..214139)
location: region:201500-214139:1
so has part: feature:201500-201538:1:exon
so has part: feature:201617-201674:1:exon
so has part: feature:201957-202135:1:exon
so has part: feature:202232-202303:1:exon
so has part: feature:202638-202757:1:exon
so has part: feature:203005-203059:1:exon
so has part: feature:203151-203227:1:exon
so has part: feature:203680-203817:1:exon
so has part: feature:203940-204014:1:exon
so has part: feature:204407-204508:1:exon
so has part: feature:204883-204981:1:exon
so has part: feature:205510-205552:1:exon
so has part: feature:205642-205738:1:exon
so has part: feature:205819-205941:1:exon
so has part: feature:206156-206179:1:exon
so has part: feature:206560-206704:1:exon
so has part: feature:206835-206931:1:exon
so has part: feature:207415-207444:1:exon
so has part: feature:207693-207822:1:exon
so has part: feature:207930-208109:1:exon
so has part: feature:208503-208550:1:exon
so has part: feature:209056-209243:1:exon
so has part: feature:209322-209468:1:exon
so has part: feature:209739-209818:1:exon
so has part: feature:210082-210207:1:exon
so has part: feature:210302-210419:1:exon
so has part: feature:210643-210821:1:exon
so has part: feature:210895-210970:1:exon
so has part: feature:211137-211304:1:exon
so has part: feature:211408-211495:1:exon
so has part: feature:211597-211698:1:exon
so has part: feature:211890-211972:1:exon
so has part: feature:212047-212253:1:exon
so has part: feature:212333-212605:1:exon
so has part: feature:212999-213091:1:exon
so has part: feature:213345-213543:1:exon
so has part: feature:213643-213829:1:exon
so has part: feature:214090-214139:1:exon

XP_019478646.2
type: Protein
SIO_000068: ncbiprotein

position:201500:1
position: 201500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:214139:1
position: 214139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:201500-201538:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:201617-201674:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:201957-202135:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:202232-202303:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:202638-202757:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:203005-203059:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:203151-203227:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:203680-203817:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:203940-204014:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:204407-204508:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:204883-204981:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:205510-205552:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:205642-205738:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:205819-205941:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:206156-206179:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:206560-206704:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:206835-206931:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:207415-207444:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:207693-207822:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:207930-208109:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:208503-208550:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:209056-209243:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:209322-209468:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:209739-209818:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:210082-210207:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:210302-210419:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:210643-210821:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:210895-210970:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:211137-211304:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:211408-211495:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:211597-211698:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:211890-211972:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:212047-212253:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:212333-212605:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:212999-213091:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:213345-213543:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:213643-213829:1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:214090-214139:1:exon

LRRC71
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LRRC71
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(215403..218590)
location: region:215403-218590:-1
so has part: feature:215403-218590:-1:exon
subclass of: SO_0000010

104914399
type: Gene
SIO_000068: ncbigene

position:215403:-1
position: 215403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:218590:-1
position: 218590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215403-218590:-1:exon

LRRC71
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LRRC71
product: leucine rich repeat containing 71
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 94% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031556922.1
SIO_010081: LRRC71
subclass of: SO_0000673
so part of: LRRC71
location: complement(join(215403..215644,215720..216008,216104..216180,216256..216295,216488..216586,216674..216888,216968..217127,217216..217284,217360..217434,217536..217611,217733..217831,217903..218010,218086..218590))
location: region:215403-218590:-1
so has part: feature:218086-218590:-1:exon
so has part: feature:217903-218010:-1:exon
so has part: feature:217733-217831:-1:exon
so has part: feature:217536-217611:-1:exon
so has part: feature:217360-217434:-1:exon
so has part: feature:217216-217284:-1:exon
so has part: feature:216968-217127:-1:exon
so has part: feature:216674-216888:-1:exon
so has part: feature:216488-216586:-1:exon
so has part: feature:216256-216295:-1:exon
so has part: feature:216104-216180:-1:exon
so has part: feature:215720-216008:-1:exon
so has part: feature:215403-215644:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:218086-218590:-1:exon

position:218086:-1
position: 218086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:217903-218010:-1:exon

position:217903:-1
position: 217903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:218010:-1
position: 218010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:217733-217831:-1:exon

position:217733:-1
position: 217733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217831:-1
position: 217831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:217536-217611:-1:exon

position:217536:-1
position: 217536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217611:-1
position: 217611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:217360-217434:-1:exon

position:217360:-1
position: 217360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217434:-1
position: 217434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:217216-217284:-1:exon

position:217216:-1
position: 217216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217284:-1
position: 217284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:216968-217127:-1:exon

position:216968:-1
position: 216968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217127:-1
position: 217127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:216674-216888:-1:exon

position:216674:-1
position: 216674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:216888:-1
position: 216888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:216488-216586:-1:exon

position:216488:-1
position: 216488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:216586:-1
position: 216586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:216256-216295:-1:exon

position:216256:-1
position: 216256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:216295:-1
position: 216295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:216104-216180:-1:exon

position:216104:-1
position: 216104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:216180:-1
position: 216180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:215720-216008:-1:exon

position:215720:-1
position: 215720
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:216008:-1
position: 216008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:215403-215644:-1:exon

position:215644:-1
position: 215644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LRRC71
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LRRC71
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: leucine-rich repeat-containing protein 71
translation: MTAEMESEQRAEQGAEQYQCCGLLQQDLTELCAWAGITSVPRVTVRPSCAATEGAESCRLGERCIQVELQNDSDPRSVCGVFLRGWKVEEEMLGVLSKCLPALGNLKALNLWSTGLTDHILPALGVMVARCPRLWSLTLEGNPLPEHSFHMLMGASSTLSHLSLRNNCIDDRAARLLGQGLSSMRSSNHSLLSLVLSFNRISDVGAEHIAELPMPLPITFLIPPPQGLRWNRSLLSLSLAHNHIGDAGAVKLAEVLQPFKLRHEEVVERRRLLMEEQGQPRAAESSNGHALSLQGSAAADKLSQAKQRTGTTKKKELLRKDKSKQTKKSTAPSDSRRSRSRGAKGSIEEQQGAEAGDLAEPSHPLLEPGLHSGGNIILPGNLVLLNLNLSRECGAGGAWLQHCPIPMXSCPPPADNHITERGLGALLAAVEEQEKQEGAGGKQGLRCLSLNRNSFSSACAAFTRLQELLLQRDPLPKPAEDEEEHSQDP
SIO_010081: LRRC71
subclass of: SO_0000673
so part of: LRRC71
location: complement(join(215528..215644,215720..216008,216104..216180,216256..216295,216488..216586,216674..216888,216968..217127,217216..217284,217360..217434,217536..217611,217733..217831,217903..218010,218086..218131))
location: region:215528-218131:-1
so has part: feature:218086-218131:-1:exon
so has part: feature:217903-218010:-1:exon
so has part: feature:217733-217831:-1:exon
so has part: feature:217536-217611:-1:exon
so has part: feature:217360-217434:-1:exon
so has part: feature:217216-217284:-1:exon
so has part: feature:216968-217127:-1:exon
so has part: feature:216674-216888:-1:exon
so has part: feature:216488-216586:-1:exon
so has part: feature:216256-216295:-1:exon
so has part: feature:216104-216180:-1:exon
so has part: feature:215720-216008:-1:exon
so has part: feature:215528-215644:-1:exon

XP_031412782.1
type: Protein
SIO_000068: ncbiprotein

position:215528:-1
position: 215528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:218131:-1
position: 218131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:218086-218131:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:217903-218010:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:217733-217831:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:217536-217611:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:217360-217434:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:217216-217284:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:216968-217127:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:216674-216888:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:216488-216586:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:216256-216295:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:216104-216180:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:215720-216008:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:215528-215644:-1:exon

PEAR1
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: PEAR1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(218836..227848)
location: region:218836-227848:-1
so has part: feature:218836-227848:-1:exon
subclass of: SO_0000010

104914400
type: Gene
SIO_000068: ncbigene

position:218836:-1
position: 218836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:227848:-1
position: 227848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:218836-227848:-1:exon

PEAR1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: PEAR1
product: platelet endothelial aggregation receptor 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_019623102.2
SIO_010081: PEAR1
subclass of: SO_0000673
so part of: PEAR1
location: complement(join(218836..219187,219292..219486,219629..219697,219813..219924,220164..220270,220336..220551,220644..220772,220909..221037,221113..221241,221337..221483,221554..221656,221803..221966,222057..222177,222540..222714,222821..223033,223371..223507,223584..223698,223769..224015,224486..224578,224654..224754,224997..225101,225179..225271,227704..227848))
location: region:218836-227848:-1
so has part: feature:227704-227848:-1:exon
so has part: feature:225179-225271:-1:exon
so has part: feature:224997-225101:-1:exon
so has part: feature:224654-224754:-1:exon
so has part: feature:224486-224578:-1:exon
so has part: feature:223769-224015:-1:exon
so has part: feature:223584-223698:-1:exon
so has part: feature:223371-223507:-1:exon
so has part: feature:222821-223033:-1:exon
so has part: feature:222540-222714:-1:exon
so has part: feature:222057-222177:-1:exon
so has part: feature:221803-221966:-1:exon
so has part: feature:221554-221656:-1:exon
so has part: feature:221337-221483:-1:exon
so has part: feature:221113-221241:-1:exon
so has part: feature:220909-221037:-1:exon
so has part: feature:220644-220772:-1:exon
so has part: feature:220336-220551:-1:exon
so has part: feature:220164-220270:-1:exon
so has part: feature:219813-219924:-1:exon
so has part: feature:219629-219697:-1:exon
so has part: feature:219292-219486:-1:exon
so has part: feature:218836-219187:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:227704-227848:-1:exon

position:227704:-1
position: 227704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:225179-225271:-1:exon

position:225179:-1
position: 225179
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:225271:-1
position: 225271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:224997-225101:-1:exon

position:224997:-1
position: 224997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:225101:-1
position: 225101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:224654-224754:-1:exon

position:224654:-1
position: 224654
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:224754:-1
position: 224754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:224486-224578:-1:exon

position:224486:-1
position: 224486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:224578:-1
position: 224578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:223769-224015:-1:exon

position:223769:-1
position: 223769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:224015:-1
position: 224015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:223584-223698:-1:exon

position:223584:-1
position: 223584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:223698:-1
position: 223698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:223371-223507:-1:exon

position:223371:-1
position: 223371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:223507:-1
position: 223507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:222821-223033:-1:exon

position:222821:-1
position: 222821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:223033:-1
position: 223033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:222540-222714:-1:exon

position:222540:-1
position: 222540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:222714:-1
position: 222714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:222057-222177:-1:exon

position:222057:-1
position: 222057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:222177:-1
position: 222177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:221803-221966:-1:exon

position:221803:-1
position: 221803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:221966:-1
position: 221966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:221554-221656:-1:exon

position:221554:-1
position: 221554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:221656:-1
position: 221656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:221337-221483:-1:exon

position:221337:-1
position: 221337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:221483:-1
position: 221483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:221113-221241:-1:exon

position:221113:-1
position: 221113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:221241:-1
position: 221241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:220909-221037:-1:exon

position:220909:-1
position: 220909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:221037:-1
position: 221037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:220644-220772:-1:exon

position:220644:-1
position: 220644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:220772:-1
position: 220772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:220336-220551:-1:exon

position:220336:-1
position: 220336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:220551:-1
position: 220551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:220164-220270:-1:exon

position:220164:-1
position: 220164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:220270:-1
position: 220270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:219813-219924:-1:exon

position:219813:-1
position: 219813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:219924:-1
position: 219924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:219629-219697:-1:exon

position:219629:-1
position: 219629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:219697:-1
position: 219697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:219292-219486:-1:exon

position:219292:-1
position: 219292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:219486:-1
position: 219486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:218836-219187:-1:exon

position:219187:-1
position: 219187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PEAR1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: PEAR1
product: platelet endothelial aggregation receptor 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 85 samples with support for all annotated introns
transcript id: XM_010723848.3
SIO_010081: PEAR1
subclass of: SO_0000673
so part of: PEAR1
location: complement(join(218836..219187,219292..219486,219629..219697,219813..219924,220164..220270,220336..220551,220644..220772,220909..221037,221113..221241,221337..221483,221554..221656,221803..221966,222057..222177,222540..222714,222821..223033,223371..223507,223584..223698,223769..224015,224486..224578,224654..224754,224997..225101,225179..225271,225551..225667,227704..227848))
location: region:218836-227848:-1
so has part: feature:227704-227848:-1:exon
so has part: feature:225551-225667:-1:exon
so has part: feature:225179-225271:-1:exon
so has part: feature:224997-225101:-1:exon
so has part: feature:224654-224754:-1:exon
so has part: feature:224486-224578:-1:exon
so has part: feature:223769-224015:-1:exon
so has part: feature:223584-223698:-1:exon
so has part: feature:223371-223507:-1:exon
so has part: feature:222821-223033:-1:exon
so has part: feature:222540-222714:-1:exon
so has part: feature:222057-222177:-1:exon
so has part: feature:221803-221966:-1:exon
so has part: feature:221554-221656:-1:exon
so has part: feature:221337-221483:-1:exon
so has part: feature:221113-221241:-1:exon
so has part: feature:220909-221037:-1:exon
so has part: feature:220644-220772:-1:exon
so has part: feature:220336-220551:-1:exon
so has part: feature:220164-220270:-1:exon
so has part: feature:219813-219924:-1:exon
so has part: feature:219629-219697:-1:exon
so has part: feature:219292-219486:-1:exon
so has part: feature:218836-219187:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:227704-227848:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:225551-225667:-1:exon

position:225551:-1
position: 225551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:225667:-1
position: 225667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:225179-225271:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:224997-225101:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:224654-224754:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:224486-224578:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:223769-224015:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:223584-223698:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:223371-223507:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:222821-223033:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:222540-222714:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:222057-222177:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:221803-221966:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:221554-221656:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:221337-221483:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:221113-221241:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:220909-221037:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:220644-220772:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:220336-220551:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:220164-220270:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:219813-219924:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:219629-219697:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:219292-219486:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:218836-219187:-1:exon

PEAR1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: PEAR1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: platelet endothelial aggregation receptor 1 isoform X1
translation: MGSLEPASGAAVRMVLRTVALALHACLLAALHPSDPNVCSYWESFTAAVKESYTKPHIVTSTEPCTGTPGLPQPCPQQRVVYRTEYRQAVRTDYRRRYQCCLGYYENRDTCVPRCTQECVHGRCVAPERCQCEPGWRGHDCSSKCDDHSWGQDCEHRCDCHHGAPCDPLSGVCACPPGFTPPLCHQPCPPGSYGPDCRLHCPCHHEALCNTSTGACLCPPRLAGPLCEVLCPEGAPCGTHCPCQNGGICHPPGSSTCVCPHGWMGDICSIPCPPGRFGPGCQGECRCHNGGRCDPLGGQCRCAPGFTGEQCRERCPVGRYGQDCQESCDCANGGQCFHVDGACLCEAGFQGSRCEEPRCLPGLYGIHCQSHCLCHPQHSQSCHPLLGECSCRPGWAGLFCNESCPPGSFGAGCLQLCLCLNGGTCNGTTGRCHCPPGYTDEHCSSLCPSDTFGLNCSERCSCQHGVACSPIDGSCICKEGWHGPDCSIPCPDGTWGPGCNGSCDCAHGATCSAQSGVCSCTPGWHGPRCHQPCPNGTFGAGCGQRCECAHADGCDPITGECHCLPGWTGLQCKQSCPQGSWGRGCRQPCMCRNGASCSPEDGSCTCTPGFRGPTCQRQCPPGRYGKKCALSCSCANGSSCHHATGACLCAAGWSGPHCSQPCTPGSWGDACSQRCQCHNRGTCDPVEGTCHCPAGWTGTSCEEECPPGTFGLQCDQLCHCPHNATCHPVSGTCPCAPGRSGPQCEAGNPDQPYTIMPAPPLAYSTLGMVVSLVALVALLVAVVAVALCYRHRQKGKENRHLAVAYTAGRMDTSEYVVPDVPPNHTHYYSNPSYHTLSQCTLPAPGSQDRASSLKVPSSQPFPGAERPYGPDGNATLPPDWKHLGAPPQGSRGGGQMDRSYSYSYTCSLGKYYSTEHPQEGLRASGSSLASENPYATIKDVPSPLAKAPEGSYMEMKSPVQREMSYAEIGLLEEPDSNEEESSPGGAECAAPARDIPSHYDSPKNSHIPSHYDVPPVRHPPSPPLRRKDR
SIO_010081: PEAR1
subclass of: SO_0000673
so part of: PEAR1
location: complement(join(219036..219187,219292..219486,219629..219697,219813..219924,220164..220270,220336..220551,220644..220772,220909..221037,221113..221241,221337..221483,221554..221656,221803..221966,222057..222177,222540..222714,222821..223033,223371..223507,223584..223698,223769..224015,224486..224578,224654..224754,224997..225101,225179..225271,225551..225588))
location: region:219036-225588:-1
so has part: feature:225551-225588:-1:exon
so has part: feature:225179-225271:-1:exon
so has part: feature:224997-225101:-1:exon
so has part: feature:224654-224754:-1:exon
so has part: feature:224486-224578:-1:exon
so has part: feature:223769-224015:-1:exon
so has part: feature:223584-223698:-1:exon
so has part: feature:223371-223507:-1:exon
so has part: feature:222821-223033:-1:exon
so has part: feature:222540-222714:-1:exon
so has part: feature:222057-222177:-1:exon
so has part: feature:221803-221966:-1:exon
so has part: feature:221554-221656:-1:exon
so has part: feature:221337-221483:-1:exon
so has part: feature:221113-221241:-1:exon
so has part: feature:220909-221037:-1:exon
so has part: feature:220644-220772:-1:exon
so has part: feature:220336-220551:-1:exon
so has part: feature:220164-220270:-1:exon
so has part: feature:219813-219924:-1:exon
so has part: feature:219629-219697:-1:exon
so has part: feature:219292-219486:-1:exon
so has part: feature:219036-219187:-1:exon

XP_010722150.1
type: Protein
SIO_000068: ncbiprotein

position:219036:-1
position: 219036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:225588:-1
position: 225588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:225551-225588:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:225179-225271:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:224997-225101:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:224654-224754:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:224486-224578:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:223769-224015:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:223584-223698:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:223371-223507:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:222821-223033:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:222540-222714:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:222057-222177:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:221803-221966:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:221554-221656:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:221337-221483:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:221113-221241:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:220909-221037:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:220644-220772:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:220336-220551:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:220164-220270:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:219813-219924:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:219629-219697:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:219292-219486:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:219036-219187:-1:exon

PEAR1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: PEAR1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: platelet endothelial aggregation receptor 1 isoform X2
translation: MVLRTVALALHACLLAALHPSDPNVCSYWESFTAAVKESYTKPHIVTSTEPCTGTPGLPQPCPQQRVVYRTEYRQAVRTDYRRRYQCCLGYYENRDTCVPRCTQECVHGRCVAPERCQCEPGWRGHDCSSKCDDHSWGQDCEHRCDCHHGAPCDPLSGVCACPPGFTPPLCHQPCPPGSYGPDCRLHCPCHHEALCNTSTGACLCPPRLAGPLCEVLCPEGAPCGTHCPCQNGGICHPPGSSTCVCPHGWMGDICSIPCPPGRFGPGCQGECRCHNGGRCDPLGGQCRCAPGFTGEQCRERCPVGRYGQDCQESCDCANGGQCFHVDGACLCEAGFQGSRCEEPRCLPGLYGIHCQSHCLCHPQHSQSCHPLLGECSCRPGWAGLFCNESCPPGSFGAGCLQLCLCLNGGTCNGTTGRCHCPPGYTDEHCSSLCPSDTFGLNCSERCSCQHGVACSPIDGSCICKEGWHGPDCSIPCPDGTWGPGCNGSCDCAHGATCSAQSGVCSCTPGWHGPRCHQPCPNGTFGAGCGQRCECAHADGCDPITGECHCLPGWTGLQCKQSCPQGSWGRGCRQPCMCRNGASCSPEDGSCTCTPGFRGPTCQRQCPPGRYGKKCALSCSCANGSSCHHATGACLCAAGWSGPHCSQPCTPGSWGDACSQRCQCHNRGTCDPVEGTCHCPAGWTGTSCEEECPPGTFGLQCDQLCHCPHNATCHPVSGTCPCAPGRSGPQCEAGNPDQPYTIMPAPPLAYSTLGMVVSLVALVALLVAVVAVALCYRHRQKGKENRHLAVAYTAGRMDTSEYVVPDVPPNHTHYYSNPSYHTLSQCTLPAPGSQDRASSLKVPSSQPFPGAERPYGPDGNATLPPDWKHLGAPPQGSRGGGQMDRSYSYSYTCSLGKYYSTEHPQEGLRASGSSLASENPYATIKDVPSPLAKAPEGSYMEMKSPVQREMSYAEIGLLEEPDSNEEESSPGGAECAAPARDIPSHYDSPKNSHIPSHYDVPPVRHPPSPPLRRKDR
SIO_010081: PEAR1
subclass of: SO_0000673
so part of: PEAR1
location: complement(join(219036..219187,219292..219486,219629..219697,219813..219924,220164..220270,220336..220551,220644..220772,220909..221037,221113..221241,221337..221483,221554..221656,221803..221966,222057..222177,222540..222714,222821..223033,223371..223507,223584..223698,223769..224015,224486..224578,224654..224754,224997..225101,225179..225270))
location: region:219036-225270:-1
so has part: feature:225179-225270:-1:exon
so has part: feature:224997-225101:-1:exon
so has part: feature:224654-224754:-1:exon
so has part: feature:224486-224578:-1:exon
so has part: feature:223769-224015:-1:exon
so has part: feature:223584-223698:-1:exon
so has part: feature:223371-223507:-1:exon
so has part: feature:222821-223033:-1:exon
so has part: feature:222540-222714:-1:exon
so has part: feature:222057-222177:-1:exon
so has part: feature:221803-221966:-1:exon
so has part: feature:221554-221656:-1:exon
so has part: feature:221337-221483:-1:exon
so has part: feature:221113-221241:-1:exon
so has part: feature:220909-221037:-1:exon
so has part: feature:220644-220772:-1:exon
so has part: feature:220336-220551:-1:exon
so has part: feature:220164-220270:-1:exon
so has part: feature:219813-219924:-1:exon
so has part: feature:219629-219697:-1:exon
so has part: feature:219292-219486:-1:exon
so has part: feature:219036-219187:-1:exon

XP_019478647.1
type: Protein
SIO_000068: ncbiprotein

position:225270:-1
position: 225270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:225179-225270:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:224997-225101:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:224654-224754:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:224486-224578:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:223769-224015:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:223584-223698:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:223371-223507:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:222821-223033:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:222540-222714:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:222057-222177:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:221803-221966:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:221554-221656:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:221337-221483:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:221113-221241:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:220909-221037:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:220644-220772:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:220336-220551:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:220164-220270:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:219813-219924:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:219629-219697:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:219292-219486:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:219036-219187:-1:exon

NTRK1
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: NTRK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(231450..>239010)
location: region:231450-239010:-1
so has part: feature:231450-239010:-1:exon
subclass of: SO_0000010

100541244
type: Gene
SIO_000068: ncbigene

position:231450:-1
position: 231450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:239010:-1
position: 239010
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:231450-239010:-1:exon

NTRK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: NTRK1
product: neurotrophic receptor tyrosine kinase 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031556905.1
SIO_010081: NTRK1
subclass of: SO_0000673
so part of: NTRK1
location: complement(join(231450..231988,232139..232297,232454..232694,233688..233860,233924..234054,234143..234289,234587..234689,234962..235020,235167..235184,235384..235713,235828..235954,236055..236200,236286..236440,236764..236832,237291..237362,237440..237514,238895..>239010))
location: region:231450-239010:-1
so has part: feature:238895-239010:-1:exon
so has part: feature:237440-237514:-1:exon
so has part: feature:237291-237362:-1:exon
so has part: feature:236764-236832:-1:exon
so has part: feature:236286-236440:-1:exon
so has part: feature:236055-236200:-1:exon
so has part: feature:235828-235954:-1:exon
so has part: feature:235384-235713:-1:exon
so has part: feature:235167-235184:-1:exon
so has part: feature:234962-235020:-1:exon
so has part: feature:234587-234689:-1:exon
so has part: feature:234143-234289:-1:exon
so has part: feature:233924-234054:-1:exon
so has part: feature:233688-233860:-1:exon
so has part: feature:232454-232694:-1:exon
so has part: feature:232139-232297:-1:exon
so has part: feature:231450-231988:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:238895-239010:-1:exon

position:238895:-1
position: 238895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:237440-237514:-1:exon

position:237440:-1
position: 237440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:237514:-1
position: 237514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:237291-237362:-1:exon

position:237291:-1
position: 237291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:237362:-1
position: 237362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:236764-236832:-1:exon

position:236764:-1
position: 236764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:236832:-1
position: 236832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:236286-236440:-1:exon

position:236286:-1
position: 236286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:236440:-1
position: 236440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:236055-236200:-1:exon

position:236055:-1
position: 236055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:236200:-1
position: 236200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:235828-235954:-1:exon

position:235828:-1
position: 235828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:235954:-1
position: 235954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:235384-235713:-1:exon

position:235384:-1
position: 235384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:235713:-1
position: 235713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:235167-235184:-1:exon

position:235167:-1
position: 235167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:235184:-1
position: 235184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:234962-235020:-1:exon

position:234962:-1
position: 234962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:235020:-1
position: 235020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:234587-234689:-1:exon

position:234587:-1
position: 234587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:234689:-1
position: 234689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:234143-234289:-1:exon

position:234143:-1
position: 234143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:234289:-1
position: 234289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:233924-234054:-1:exon

position:233924:-1
position: 233924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:234054:-1
position: 234054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:233688-233860:-1:exon

position:233688:-1
position: 233688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:233860:-1
position: 233860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:232454-232694:-1:exon

position:232454:-1
position: 232454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:232694:-1
position: 232694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:232139-232297:-1:exon

position:232139:-1
position: 232139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:232297:-1
position: 232297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:231450-231988:-1:exon

position:231988:-1
position: 231988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NTRK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: NTRK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: high affinity nerve growth factor receptor
translation: PACPAQCRCPEPRILRCREPRTVSSLSALLLGTRRLTDVIIENQPLLTSLTQNDTRMLWDLRHLTISNSGLQHISDDAFQDTHRLSHVNLSFNALTSLSWKSFQHLPLQELILEGNPFNCSCGIRWLQLWQNGSRAELGNQSLVCWEGSALVALGSHLLYGCEPPTARIEHPDVVLRQGDNINLTCHIWGEPPATGEWVLPDMGSEPSVTKLSEWELVLEINNISSSLNHKDLTCRAENEAGLAEDSVMLNVTFPPVILLLHEAISQHFWCIPFSVDSNPAPSILWFFNGSALPEGPYIHTRIVEYEPNSTILHGCLQLNRPTHVNNGNYTLMVQNPLGSATRSIQGRFMDNPFSFSPEDPIPVSISPLGTRNSSLEGPVETADEHTFGVSVAVALAVFASLFLSVMLIVLNKCGRRSKFGINRSAVLAQEDDLAMSLHFMNLGSSPMSSTESKLDGLKSNFIENPQYFCNACVHHVQRRDIVLKWELGEGAFGKVFLAECSHLLPEQEKTLVAVKALKEVTESARLDFQREAELLTVLQHEHIVKFYGVCTEGEPLIMVFEYMKHGDLNRFLRSHGPDAKILDQGQGQPCGQLTLSHMLQIATQIASGMVYLASLHFVHRDLATRNCLVGHDLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIECITQGRELERPRTCPSEVYDIMQSCWQREPQQRQRIQDIHSRLQALVKTPPIYLDILG
SIO_010081: NTRK1
subclass of: SO_0000673
so part of: NTRK1
location: complement(join(231803..231988,232139..232297,232454..232694,233688..233860,233924..234054,234143..234289,234587..234689,234962..235020,235167..235184,235384..235713,235828..235954,236055..236200,236286..236440,236764..236832,237291..237362,237440..237514,238895..>239010))
location: region:231803-239010:-1
so has part: feature:238895-239010:-1:exon
so has part: feature:237440-237514:-1:exon
so has part: feature:237291-237362:-1:exon
so has part: feature:236764-236832:-1:exon
so has part: feature:236286-236440:-1:exon
so has part: feature:236055-236200:-1:exon
so has part: feature:235828-235954:-1:exon
so has part: feature:235384-235713:-1:exon
so has part: feature:235167-235184:-1:exon
so has part: feature:234962-235020:-1:exon
so has part: feature:234587-234689:-1:exon
so has part: feature:234143-234289:-1:exon
so has part: feature:233924-234054:-1:exon
so has part: feature:233688-233860:-1:exon
so has part: feature:232454-232694:-1:exon
so has part: feature:232139-232297:-1:exon
so has part: feature:231803-231988:-1:exon

XP_031412765.1
type: Protein
SIO_000068: ncbiprotein

position:231803:-1
position: 231803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:238895-239010:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:237440-237514:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:237291-237362:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:236764-236832:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:236286-236440:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:236055-236200:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:235828-235954:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:235384-235713:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:235167-235184:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:234962-235020:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:234587-234689:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:234143-234289:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:233924-234054:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:233688-233860:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:232454-232694:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:232139-232297:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:231803-231988:-1:exon

INSRR
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: INSRR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(240960..250095)
location: region:240960-250095:-1
so has part: feature:240960-250095:-1:exon
subclass of: SO_0000010

100541093
type: Gene
SIO_000068: ncbigene

position:240960:-1
position: 240960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:250095:-1
position: 250095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:240960-250095:-1:exon

INSRR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: INSRR
product: insulin receptor related receptor
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_010723849.2
SIO_010081: INSRR
subclass of: SO_0000673
so part of: INSRR
location: complement(join(240960..241260,241417..241551,241625..241754,241912..242071,242174..242284,242361..242591,242706..242776,242926..243034,243319..243484,243557..243693,244012..244277,244377..244418,244522..244711,244822..244989,245065..245303,245435..245561,245631..245845,245921..246065,246195..246337,246420..246732,247537..248088,249594..250095))
location: region:240960-250095:-1
so has part: feature:249594-250095:-1:exon
so has part: feature:247537-248088:-1:exon
so has part: feature:246420-246732:-1:exon
so has part: feature:246195-246337:-1:exon
so has part: feature:245921-246065:-1:exon
so has part: feature:245631-245845:-1:exon
so has part: feature:245435-245561:-1:exon
so has part: feature:245065-245303:-1:exon
so has part: feature:244822-244989:-1:exon
so has part: feature:244522-244711:-1:exon
so has part: feature:244377-244418:-1:exon
so has part: feature:244012-244277:-1:exon
so has part: feature:243557-243693:-1:exon
so has part: feature:243319-243484:-1:exon
so has part: feature:242926-243034:-1:exon
so has part: feature:242706-242776:-1:exon
so has part: feature:242361-242591:-1:exon
so has part: feature:242174-242284:-1:exon
so has part: feature:241912-242071:-1:exon
so has part: feature:241625-241754:-1:exon
so has part: feature:241417-241551:-1:exon
so has part: feature:240960-241260:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:249594-250095:-1:exon

position:249594:-1
position: 249594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:247537-248088:-1:exon

position:247537:-1
position: 247537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:248088:-1
position: 248088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:246420-246732:-1:exon

position:246420:-1
position: 246420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:246732:-1
position: 246732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:246195-246337:-1:exon

position:246195:-1
position: 246195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:246337:-1
position: 246337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:245921-246065:-1:exon

position:245921:-1
position: 245921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:246065:-1
position: 246065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:245631-245845:-1:exon

position:245631:-1
position: 245631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:245845:-1
position: 245845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:245435-245561:-1:exon

position:245435:-1
position: 245435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:245561:-1
position: 245561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:245065-245303:-1:exon

position:245065:-1
position: 245065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:245303:-1
position: 245303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:244822-244989:-1:exon

position:244822:-1
position: 244822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:244989:-1
position: 244989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:244522-244711:-1:exon

position:244522:-1
position: 244522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:244711:-1
position: 244711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:244377-244418:-1:exon

position:244377:-1
position: 244377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:244418:-1
position: 244418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:244012-244277:-1:exon

position:244012:-1
position: 244012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:244277:-1
position: 244277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:243557-243693:-1:exon

position:243557:-1
position: 243557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:243693:-1
position: 243693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:243319-243484:-1:exon

position:243319:-1
position: 243319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:243484:-1
position: 243484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:242926-243034:-1:exon

position:242926:-1
position: 242926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:243034:-1
position: 243034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:242706-242776:-1:exon

position:242706:-1
position: 242706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:242776:-1
position: 242776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:242361-242591:-1:exon

position:242361:-1
position: 242361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:242591:-1
position: 242591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:242174-242284:-1:exon

position:242174:-1
position: 242174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:242284:-1
position: 242284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:241912-242071:-1:exon

position:241912:-1
position: 241912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:242071:-1
position: 242071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:241625-241754:-1:exon

position:241625:-1
position: 241625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:241754:-1
position: 241754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:241417-241551:-1:exon

position:241417:-1
position: 241417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:241551:-1
position: 241551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:240960-241260:-1:exon

position:241260:-1
position: 241260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

INSRR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: INSRR
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: insulin receptor-related protein
translation: MGALGVLRLLLALLLLSPLLLPPVQAPSEICSSMDIRNDVSQLQKLENCSIIEGNLQILLMFTTGAEDFRGLSFPRLLMITEYLLLFRVYGLESLRDLFPNLSVIRGTNLFFNYALVIFEMPHLREIGLHSLSHVLRGSVRIERNQELCHLSTIDWGLLLPDAVDNSYIVGNKLAEECADVCPGILDVEKPCAQTVVNGQLDYRCWTSSYCQKVCPCGAGSACTASGECCHAECLGGCGRPRDSRSCVACRHFHFNGHCLPSCPPRTYEYEGWRCVTAEYCASLRKVSDNPRDASKFVIHQQQCLSECPPGYTRNESSIFCHKCEGLCPKACKVGTKTVDSTRAAQELAGCTLVEGNLILNIRRGYNLASELQSSLGLIETITGFLKIKHSFALVSLSFFKNLKLIRGDSMVDGNYTLYVLDNQNLQQLWDWSHHVLSIPVGKMYFAFNPKLCLAEIYHMEEVTGTKGRQNKAEINPRTNGDRASCKTQTLRFTSNITESDRIFLKWERYRPPEYRDLLSFIVYYKESPFQNVSEYVGQDACGAQSWNVLDVELPLSSEQEPGVALLNLRPWTQYAIFVRAITLTTAEEGRNYGAQSEVVYIRTMPAAPTVPRDVISMSNSSSHIVVRWKPPTQRNGNITYYLVLWQQLAEDMELYVNDYCHKGLKLPTSSADTRFSDGDGPEVEQDAEERCCPCRPADGQLRMEGEAESFQKKFENFLHNSIIIPRPPWKVTSINKYPQRTPKRRRDLMAVTSPTNASSVEPPPQSHTRAEPKHDFQIFEDKVVRDRAVLSRLRHFTEYRIDIHACNHAAHTVGCSAATFVFARTMPELQADNIPGNVTWEPASKNSVLLRWQEPHNPNGLILKYEIKYSRESEEVTTVVCVSRHRYAKYGGVHLALLQPGNYSAKVRATSLAGNGSWTGLVKFYILGPAEEESGSFYILLTVTPVVLMVLISCLAVFVFFYNKKRSNDGYPSGTLYASVNPEYFSASDMYIPDEWEVSREKITVIRELGQGSFGMVYEGLARGLVAEGEETKVALKTVNELATMRERIEFLKEASVMKAFKCHHVVRLLGVVSQGQPALVIMELMTRGDLKSYLRSLRPDAENNPGLPPPSLKDMIQMAGEIADGMAYLNAKKFVHRDLAARNCMVSEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPEALKDGIFNTQSDVWSFGVVLWEITTLAEQPYQGMSNEQVLHYVMDNGVLERPENCPDQLHELMCLCWQQNPRQRPSFIQLLESIKEHMAPAFRTHSFFYSPENRRRGSSEPSDAETEPPPEEDEPPAPPLPTRKGRGRLPNGTGCL
SIO_010081: INSRR
subclass of: SO_0000673
so part of: INSRR
location: complement(join(240996..241260,241417..241551,241625..241754,241912..242071,242174..242284,242361..242591,242706..242776,242926..243034,243319..243484,243557..243693,244012..244277,244377..244418,244522..244711,244822..244989,245065..245303,245435..245561,245631..245845,245921..246065,246195..246337,246420..246732,247537..248088,249594..249681))
location: region:240996-249681:-1
so has part: feature:249594-249681:-1:exon
so has part: feature:247537-248088:-1:exon
so has part: feature:246420-246732:-1:exon
so has part: feature:246195-246337:-1:exon
so has part: feature:245921-246065:-1:exon
so has part: feature:245631-245845:-1:exon
so has part: feature:245435-245561:-1:exon
so has part: feature:245065-245303:-1:exon
so has part: feature:244822-244989:-1:exon
so has part: feature:244522-244711:-1:exon
so has part: feature:244377-244418:-1:exon
so has part: feature:244012-244277:-1:exon
so has part: feature:243557-243693:-1:exon
so has part: feature:243319-243484:-1:exon
so has part: feature:242926-243034:-1:exon
so has part: feature:242706-242776:-1:exon
so has part: feature:242361-242591:-1:exon
so has part: feature:242174-242284:-1:exon
so has part: feature:241912-242071:-1:exon
so has part: feature:241625-241754:-1:exon
so has part: feature:241417-241551:-1:exon
so has part: feature:240996-241260:-1:exon

XP_010722151.1
type: Protein
SIO_000068: ncbiprotein

position:240996:-1
position: 240996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:249681:-1
position: 249681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:249594-249681:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:247537-248088:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:246420-246732:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:246195-246337:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:245921-246065:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:245631-245845:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:245435-245561:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:245065-245303:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:244822-244989:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:244522-244711:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:244377-244418:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:244012-244277:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:243557-243693:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:243319-243484:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:242926-243034:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:242706-242776:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:242361-242591:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:242174-242284:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:241912-242071:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:241625-241754:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:241417-241551:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:240996-241260:-1:exon

LOC100540942
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC100540942
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(250194..254214)
location: region:250194-254214:-1
so has part: feature:250194-254214:-1:exon
subclass of: SO_0000010

100540942
type: Gene
SIO_000068: ncbigene

position:250194:-1
position: 250194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:254214:-1
position: 254214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:250194-254214:-1:exon

LOC100540942
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC100540942
product: death-associated protein kinase 2-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
transcript id: XM_010723851.3
SIO_010081: LOC100540942
subclass of: SO_0000673
so part of: LOC100540942
location: complement(join(250194..250515,250626..250709,250912..251001,251103..251148,251249..251401,251504..251530,251623..251671,251852..251981,252093..252231,252315..252536,252626..252687,252846..252886,253466..253807,254112..254208))
location: region:250194-254208:-1
so has part: feature:254112-254208:-1:exon
so has part: feature:253466-253807:-1:exon
so has part: feature:252846-252886:-1:exon
so has part: feature:252626-252687:-1:exon
so has part: feature:252315-252536:-1:exon
so has part: feature:252093-252231:-1:exon
so has part: feature:251852-251981:-1:exon
so has part: feature:251623-251671:-1:exon
so has part: feature:251504-251530:-1:exon
so has part: feature:251249-251401:-1:exon
so has part: feature:251103-251148:-1:exon
so has part: feature:250912-251001:-1:exon
so has part: feature:250626-250709:-1:exon
so has part: feature:250194-250515:-1:exon

position:254208:-1
position: 254208
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254112-254208:-1:exon

position:254112:-1
position: 254112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:253466-253807:-1:exon

position:253466:-1
position: 253466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:253807:-1
position: 253807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:252846-252886:-1:exon

position:252846:-1
position: 252846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:252886:-1
position: 252886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:252626-252687:-1:exon

position:252626:-1
position: 252626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:252687:-1
position: 252687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:252315-252536:-1:exon

position:252315:-1
position: 252315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:252536:-1
position: 252536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:252093-252231:-1:exon

position:252093:-1
position: 252093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:252231:-1
position: 252231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:251852-251981:-1:exon

position:251852:-1
position: 251852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:251981:-1
position: 251981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:251623-251671:-1:exon

position:251623:-1
position: 251623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:251671:-1
position: 251671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:251504-251530:-1:exon

position:251504:-1
position: 251504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:251530:-1
position: 251530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:251249-251401:-1:exon

position:251249:-1
position: 251249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:251401:-1
position: 251401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:251103-251148:-1:exon

position:251103:-1
position: 251103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:251148:-1
position: 251148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:250912-251001:-1:exon

position:250912:-1
position: 250912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:251001:-1
position: 251001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:250626-250709:-1:exon

position:250626:-1
position: 250626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:250709:-1
position: 250709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:250194-250515:-1:exon

position:250515:-1
position: 250515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100540942
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC100540942
product: death-associated protein kinase 2-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 39 samples with support for all annotated introns
transcript id: XM_031556923.1
SIO_010081: LOC100540942
subclass of: SO_0000673
so part of: LOC100540942
location: complement(join(250194..250515,250626..250709,250912..251001,251103..251148,251249..251401,251504..251530,251623..251671,251852..251981,252093..252231,252315..252536,252626..252687,252846..252886,252958..253081,253466..253523))
location: region:250194-253523:-1
so has part: feature:253466-253523:-1:exon
so has part: feature:252958-253081:-1:exon
so has part: feature:252846-252886:-1:exon
so has part: feature:252626-252687:-1:exon
so has part: feature:252315-252536:-1:exon
so has part: feature:252093-252231:-1:exon
so has part: feature:251852-251981:-1:exon
so has part: feature:251623-251671:-1:exon
so has part: feature:251504-251530:-1:exon
so has part: feature:251249-251401:-1:exon
so has part: feature:251103-251148:-1:exon
so has part: feature:250912-251001:-1:exon
so has part: feature:250626-250709:-1:exon
so has part: feature:250194-250515:-1:exon

position:253523:-1
position: 253523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:253466-253523:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:252958-253081:-1:exon

position:252958:-1
position: 252958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:253081:-1
position: 253081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:252846-252886:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:252626-252687:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:252315-252536:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:252093-252231:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:251852-251981:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:251623-251671:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:251504-251530:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:251249-251401:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:251103-251148:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:250912-251001:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:250626-250709:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:250194-250515:-1:exon

LOC100540942
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC100540942
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: death-associated protein kinase 2-like isoform X1
translation: MGCTWCSLCQQGRFPVCNPGAHGCGQNSHGPRAAPRGCDPTRPLPAPLQLSGRCRAGTAWGDFSRDLGSRRAALGVSCCFSLSRCPADPRNHSSFEETKAQQWHGAECGTVPRRVFIPIAGTESRAMAEDGGAASDSPQAVALRARSVEELYELLETLGSGHFGVVRRCRERSTGTFYAAKFVKTRRCRGSRRGLERVQVEQEVAILRDLQHPNIMQLHDLFTCRAEMVLVLELMRGGELFDFIAEKEMLLEEEAIEFLEQILLGVQYLHGRHIAHFDLKPENIMLQEKDVPKPQIKIIDFGLAQKLEDGVTFKSLCGTPQYIAPEVINYEPLSSATDMWSIGVITYILLSGLSPFQGETDAETLSNVLEGAYEFEERYFSDTSEMAKDFIRQLLVKEPQERMTASECLVHPWIKPLNRKQAAKRCRSSINMKNFRKFNARRKWKLSYNMVSACNRLCRMRLLCSPRTEGEELRCCESDQEEEGSRPVTLLRRRRSSCS
SIO_010081: LOC100540942
subclass of: SO_0000673
so part of: LOC100540942
location: complement(join(250435..250515,250626..250709,250912..251001,251103..251148,251249..251401,251504..251530,251623..251671,251852..251981,252093..252231,252315..252536,252626..252687,252846..252886,253466..253807,254112..254145))
location: region:250435-254145:-1
so has part: feature:254112-254145:-1:exon
so has part: feature:253466-253807:-1:exon
so has part: feature:252846-252886:-1:exon
so has part: feature:252626-252687:-1:exon
so has part: feature:252315-252536:-1:exon
so has part: feature:252093-252231:-1:exon
so has part: feature:251852-251981:-1:exon
so has part: feature:251623-251671:-1:exon
so has part: feature:251504-251530:-1:exon
so has part: feature:251249-251401:-1:exon
so has part: feature:251103-251148:-1:exon
so has part: feature:250912-251001:-1:exon
so has part: feature:250626-250709:-1:exon
so has part: feature:250435-250515:-1:exon

XP_010722153.1
type: Protein
SIO_000068: ncbiprotein

position:250435:-1
position: 250435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:254145:-1
position: 254145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254112-254145:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:253466-253807:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:252846-252886:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:252626-252687:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:252315-252536:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:252093-252231:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:251852-251981:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:251623-251671:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:251504-251530:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:251249-251401:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:251103-251148:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:250912-251001:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:250626-250709:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:250435-250515:-1:exon

LOC100540942
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC100540942
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: death-associated protein kinase 2-like isoform X3
translation: MAEDGGAASDSPQAVALRARSVEELYELLETLGSGHFGVVRRCRERSTGTFYAAKFVKTRRCRGSRRGLERVQVEQEVAILRDLQHPNIMQLHDLFTCRAEMVLVLELMRGGELFDFIAEKEMLLEEEAIEFLEQILLGVQYLHGRHIAHFDLKPENIMLQEKDVPKPQIKIIDFGLAQKLEDGVTFKSLCGTPQYIAPEVINYEPLSSATDMWSIGVITYILLSGLSPFQGETDAETLSNVLEGAYEFEERYFSDTSEMAKDFIRQLLVKEPQERMTASECLVHPWIKPLNRKQAAKRCRSSINMKNFRKFNARRKWKLSYNMVSACNRLCRMRLLCSPRTEGEELRCCESDQEEEGSRPVTLLRRRRSSCS
SIO_010081: LOC100540942
subclass of: SO_0000673
so part of: LOC100540942
location: complement(join(250435..250515,250626..250709,250912..251001,251103..251148,251249..251401,251504..251530,251623..251671,251852..251981,252093..252231,252315..252536,252626..252687,252846..252884))
location: region:250435-252884:-1
so has part: feature:252846-252884:-1:exon
so has part: feature:252626-252687:-1:exon
so has part: feature:252315-252536:-1:exon
so has part: feature:252093-252231:-1:exon
so has part: feature:251852-251981:-1:exon
so has part: feature:251623-251671:-1:exon
so has part: feature:251504-251530:-1:exon
so has part: feature:251249-251401:-1:exon
so has part: feature:251103-251148:-1:exon
so has part: feature:250912-251001:-1:exon
so has part: feature:250626-250709:-1:exon
so has part: feature:250435-250515:-1:exon

XP_031412783.1
type: Protein
SIO_000068: ncbiprotein

position:252884:-1
position: 252884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:252846-252884:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:252626-252687:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:252315-252536:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:252093-252231:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:251852-251981:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:251623-251671:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:251504-251530:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:251249-251401:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:251103-251148:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:250912-251001:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:250626-250709:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:250435-250515:-1:exon

LOC100540942
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC100540942
product: death-associated protein kinase 2-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
transcript id: XM_010723852.3
SIO_010081: LOC100540942
subclass of: SO_0000673
so part of: LOC100540942
location: complement(join(250912..251015,251103..251148,251249..251401,251504..251530,251623..251671,251852..251981,252093..252231,252315..252536,252626..252687,252846..252886,253466..253807,254112..254214))
location: region:250912-254214:-1
so has part: feature:254112-254214:-1:exon
so has part: feature:253466-253807:-1:exon
so has part: feature:252846-252886:-1:exon
so has part: feature:252626-252687:-1:exon
so has part: feature:252315-252536:-1:exon
so has part: feature:252093-252231:-1:exon
so has part: feature:251852-251981:-1:exon
so has part: feature:251623-251671:-1:exon
so has part: feature:251504-251530:-1:exon
so has part: feature:251249-251401:-1:exon
so has part: feature:251103-251148:-1:exon
so has part: feature:250912-251015:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:254112-254214:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:253466-253807:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:252846-252886:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:252626-252687:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:252315-252536:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:252093-252231:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:251852-251981:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:251623-251671:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:251504-251530:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:251249-251401:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:251103-251148:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:250912-251015:-1:exon

position:251015:-1
position: 251015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100540942
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC100540942
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: death-associated protein kinase 2-like isoform X2
translation: MGCTWCSLCQQGRFPVCNPGAHGCGQNSHGPRAAPRGCDPTRPLPAPLQLSGRCRAGTAWGDFSRDLGSRRAALGVSCCFSLSRCPADPRNHSSFEETKAQQWHGAECGTVPRRVFIPIAGTESRAMAEDGGAASDSPQAVALRARSVEELYELLETLGSGHFGVVRRCRERSTGTFYAAKFVKTRRCRGSRRGLERVQVEQEVAILRDLQHPNIMQLHDLFTCRAEMVLVLELMRGGELFDFIAEKEMLLEEEAIEFLEQILLGVQYLHGRHIAHFDLKPENIMLQEKDVPKPQIKIIDFGLAQKLEDGVTFKSLCGTPQYIAPEVINYEPLSSATDMWSIGVITYILLSGLSPFQGETDAETLSNVLEGAYEFEERYFSDTSEMAKDFIRQLLVKEPQERMTASECLVHPWIKLRPCSP
SIO_010081: LOC100540942
subclass of: SO_0000673
so part of: LOC100540942
location: complement(join(250995..251015,251103..251148,251249..251401,251504..251530,251623..251671,251852..251981,252093..252231,252315..252536,252626..252687,252846..252886,253466..253807,254112..254145))
location: region:250995-254145:-1
so has part: feature:254112-254145:-1:exon
so has part: feature:253466-253807:-1:exon
so has part: feature:252846-252886:-1:exon
so has part: feature:252626-252687:-1:exon
so has part: feature:252315-252536:-1:exon
so has part: feature:252093-252231:-1:exon
so has part: feature:251852-251981:-1:exon
so has part: feature:251623-251671:-1:exon
so has part: feature:251504-251530:-1:exon
so has part: feature:251249-251401:-1:exon
so has part: feature:251103-251148:-1:exon
so has part: feature:250995-251015:-1:exon

XP_010722154.1
type: Protein
SIO_000068: ncbiprotein

position:250995:-1
position: 250995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254112-254145:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:253466-253807:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:252846-252886:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:252626-252687:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:252315-252536:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:252093-252231:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:251852-251981:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:251623-251671:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:251504-251530:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:251249-251401:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:251103-251148:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:250995-251015:-1:exon

SH2D2A
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: SH2D2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 254149..258229
location: region:254149-258229:1
so has part: feature:254149-258229:1:exon
subclass of: SO_0000010

104914401
type: Gene
SIO_000068: ncbigene

position:254149:1
position: 254149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:258229:1
position: 258229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254149-258229:1:exon

SH2D2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: SH2D2A
product: SH2 domain containing 2A
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns
transcript id: XM_031556925.1
SIO_010081: SH2D2A
subclass of: SO_0000673
so part of: SH2D2A
location: join(254149..254364,254978..255317,255402..255491,255572..255737,255990..256127,256362..256835,256947..258229)
location: region:254149-258229:1
so has part: feature:254149-254364:1:exon
so has part: feature:254978-255317:1:exon
so has part: feature:255402-255491:1:exon
so has part: feature:255572-255737:1:exon
so has part: feature:255990-256127:1:exon
so has part: feature:256362-256835:1:exon
so has part: feature:256947-258229:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:254149-254364:1:exon

position:254364:1
position: 254364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:254978-255317:1:exon

position:254978:1
position: 254978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:255317:1
position: 255317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:255402-255491:1:exon

position:255402:1
position: 255402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:255491:1
position: 255491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:255572-255737:1:exon

position:255572:1
position: 255572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:255737:1
position: 255737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:255990-256127:1:exon

position:255990:1
position: 255990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:256127:1
position: 256127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:256362-256835:1:exon

position:256362:1
position: 256362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:256835:1
position: 256835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:256947-258229:1:exon

position:256947:1
position: 256947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SH2D2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: SH2D2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SH2 domain-containing protein 2A
translation: MDDTQPLFITFKCVAGDKADSIQPGHSMTLLQPHSVEHCDAWGRRGQEAAEGPQPQLPLAPCHVLQGCSQAREVAASLRARTKLWFEQTQVHRLGATGNLPAWFHGFISRKDTEQMLQDEPLGCFLVRFSESTVGFVLSYRGRERCRHFVLDQLPNGHYVILGEHSAHPELAELLQHYTHVPIPPYGELLTVPWGQDKACGVMRTPNGSSTSCKAPANHPAYSTMAKRVPGDGQAAESGPEEASNTPLPLPAKVSSSVTTQGPRSHTSSEGAEANSPSTQTHLEANPVEMLDAKYQQLMRFHTYAEPHEDTALPVEPIPFYAMGWGSSPSPEANIYAEVATVQQEPPPRGAWSPGSLLAPTFLRRRLSRSLSNQGFHRRQLPATPTAGTMQRAAPRPAPEIPLTPVNSALEFDDPVYSPRMSSTKQAAAPENIYEQVSRGHP
SIO_010081: SH2D2A
subclass of: SO_0000673
so part of: SH2D2A
location: join(254986..255317,255402..255491,255572..255737,255990..256127,256362..256835,256947..257075)
location: region:254986-257075:1
so has part: feature:254986-255317:1:exon
so has part: feature:255402-255491:1:exon
so has part: feature:255572-255737:1:exon
so has part: feature:255990-256127:1:exon
so has part: feature:256362-256835:1:exon
so has part: feature:256947-257075:1:exon

XP_031412785.1
type: Protein
SIO_000068: ncbiprotein

position:254986:1
position: 254986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:257075:1
position: 257075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254986-255317:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:255402-255491:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:255572-255737:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:255990-256127:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:256362-256835:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:256947-257075:1:exon

PRCC
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: PRCC
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(259282..270278)
location: region:259282-270278:-1
so has part: feature:259282-270278:-1:exon
subclass of: SO_0000010

100540790
type: Gene
SIO_000068: ncbigene

position:259282:-1
position: 259282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:270278:-1
position: 270278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:259282-270278:-1:exon

PRCC
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: PRCC
product: proline rich mitotic checkpoint control factor
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031556906.1
SIO_010081: PRCC
subclass of: SO_0000673
so part of: PRCC
location: complement(join(259282..259911,260358..260423,260778..260921,261804..261899,262861..263445,263864..263911,266607..266645,268821..268861,269748..269922,270267..270278))
location: region:259282-270278:-1
so has part: feature:270267-270278:-1:exon
so has part: feature:269748-269922:-1:exon
so has part: feature:268821-268861:-1:exon
so has part: feature:266607-266645:-1:exon
so has part: feature:263864-263911:-1:exon
so has part: feature:262861-263445:-1:exon
so has part: feature:261804-261899:-1:exon
so has part: feature:260778-260921:-1:exon
so has part: feature:260358-260423:-1:exon
so has part: feature:259282-259911:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:270267-270278:-1:exon

position:270267:-1
position: 270267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:269748-269922:-1:exon

position:269748:-1
position: 269748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:269922:-1
position: 269922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:268821-268861:-1:exon

position:268821:-1
position: 268821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:268861:-1
position: 268861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:266607-266645:-1:exon

position:266607:-1
position: 266607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:266645:-1
position: 266645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:263864-263911:-1:exon

position:263864:-1
position: 263864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:263911:-1
position: 263911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:262861-263445:-1:exon

position:262861:-1
position: 262861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:263445:-1
position: 263445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:261804-261899:-1:exon

position:261804:-1
position: 261804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:261899:-1
position: 261899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:260778-260921:-1:exon

position:260778:-1
position: 260778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:260921:-1
position: 260921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:260358-260423:-1:exon

position:260358:-1
position: 260358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:260423:-1
position: 260423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:259282-259911:-1:exon

position:259911:-1
position: 259911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PRCC
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: PRCC
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proline-rich protein PRCC
translation: MEKGEEQLQPSSCGSGQNTPARLKLCEPPTRRAASTAPSAGANSPSVNIPSAPRGSRAQSGSGLFTGLLHPVENYMPVKIVAPELHEGNSDSEEDEPAKKKNIFQGRGEGSGLSALLPQPKNLTVKETNRLLLPHAFSRKAADNASESKPAKAPTSSSKTKPPSKPAVATTPSPSAIKAAAKSAALQVTKQITQEEDDSDEEVEPENYFSLSDRSEPSVVAAEAYMYSSPVVSEEPPPGTEPEPQFQDAAANAPLEFKTGVGSSAAHHSWLPKSGEDYDSQPYGQFPAYGDAGGTDAYYQDYYSSGYYQEVEPAQAPPQEMSTDSSFLDDEAFKRLQGKRNRGREEINFVDIKGDDQLSGAQQWLTKSLTEEKTMKSFSKKKGDQPTGQQRRKHQITYLIHQAKERELELKNTWSENKLSRRQTQAKYGF
SIO_010081: PRCC
subclass of: SO_0000673
so part of: PRCC
location: complement(join(259825..259911,260358..260423,260778..260921,261804..261899,262861..263445,263864..263911,266607..266645,268821..268861,269748..269922,270267..270278))
location: region:259825-270278:-1
so has part: feature:270267-270278:-1:exon
so has part: feature:269748-269922:-1:exon
so has part: feature:268821-268861:-1:exon
so has part: feature:266607-266645:-1:exon
so has part: feature:263864-263911:-1:exon
so has part: feature:262861-263445:-1:exon
so has part: feature:261804-261899:-1:exon
so has part: feature:260778-260921:-1:exon
so has part: feature:260358-260423:-1:exon
so has part: feature:259825-259911:-1:exon

XP_031412766.1
type: Protein
SIO_000068: ncbiprotein

position:259825:-1
position: 259825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:270267-270278:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:269748-269922:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:268821-268861:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:266607-266645:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:263864-263911:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:262861-263445:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:261804-261899:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:260778-260921:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:260358-260423:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:259825-259911:-1:exon

HDGF
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: HDGF
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 270240..271474
location: region:270240-271474:1
so has part: feature:270240-271474:1:exon
subclass of: SO_0000010

100541551
type: Gene
SIO_000068: ncbigene

position:270240:1
position: 270240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:271474:1
position: 271474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:270240-271474:1:exon

HDGF
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: HDGF
product: heparin binding growth factor
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 222 samples with support for all annotated introns
transcript id: XM_010723853.3
SIO_010081: HDGF
subclass of: SO_0000673
so part of: HDGF
location: join(270240..270364,270510..270648,270736..270918,270987..271192,271337..271474)
location: region:270240-271474:1
so has part: feature:270240-270364:1:exon
so has part: feature:270510-270648:1:exon
so has part: feature:270736-270918:1:exon
so has part: feature:270987-271192:1:exon
so has part: feature:271337-271474:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:270240-270364:1:exon

position:270364:1
position: 270364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:270510-270648:1:exon

position:270510:1
position: 270510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:270648:1
position: 270648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:270736-270918:1:exon

position:270736:1
position: 270736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:270918:1
position: 270918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:270987-271192:1:exon

position:270987:1
position: 270987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:271192:1
position: 271192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:271337-271474:1:exon

position:271337:1
position: 271337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HDGF
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: HDGF
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: hepatoma-derived growth factor
translation: MPEAAVKSSSNKYQVFFFGTHETAFLGPKDLFPYEECKEKFGKPNKRKGFSEGLWEIEHNPTVKASGYQPTQKKTCSEDAEPEQEPEGDGEKKGNAEGSSDEEGKLVIDEQSKEKNEKAGIKRKAEDALEDSPKRTKEIEGQEAEKKIDNEEAPKEEPKPNPAEGEKEKNSDAASVPDANEAKQEGKDKAEEVRDHKESL
SIO_010081: HDGF
subclass of: SO_0000673
so part of: HDGF
location: join(270297..270364,270510..270648,270736..270918,270987..271192,271337..271343)
location: region:270297-271343:1
so has part: feature:270297-270364:1:exon
so has part: feature:270510-270648:1:exon
so has part: feature:270736-270918:1:exon
so has part: feature:270987-271192:1:exon
so has part: feature:271337-271343:1:exon

XP_010722155.1
type: Protein
SIO_000068: ncbiprotein

position:270297:1
position: 270297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:271343:1
position: 271343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:270297-270364:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:270510-270648:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:270736-270918:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:270987-271192:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:271337-271343:1:exon

MRPL24
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: MRPL24
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <271580..272538
location: region:271580-272538:1
so has part: feature:271580-272538:1:exon
subclass of: SO_0000010

100541701
type: Gene
SIO_000068: ncbigene

position:271580:1
position: 271580
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:272538:1
position: 272538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:271580-272538:1:exon

MRPL24
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: MRPL24
product: mitochondrial ribosomal protein L24
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 222 samples with support for all annotated introns
transcript id: XM_003204600.2
SIO_010081: MRPL24
subclass of: SO_0000673
so part of: MRPL24
location: join(<271580..271678,271759..271854,271933..272036,272110..272240,272320..272538)
location: region:271580-272538:1
so has part: feature:271580-271678:1:exon
so has part: feature:271759-271854:1:exon
so has part: feature:271933-272036:1:exon
so has part: feature:272110-272240:1:exon
so has part: feature:272320-272538:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:271580-271678:1:exon

position:271678:1
position: 271678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:271759-271854:1:exon

position:271759:1
position: 271759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:271854:1
position: 271854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:271933-272036:1:exon

position:271933:1
position: 271933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:272036:1
position: 272036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:272110-272240:1:exon

position:272110:1
position: 272110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:272240:1
position: 272240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:272320-272538:1:exon

position:272320:1
position: 272320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MRPL24
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: MRPL24
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 39S ribosomal protein L24, mitochondrial
translation: AAERLRNPPGLRRKKIFVEPISREDWKVFRGDTVQVLTGKDAGKQAMVTQVVRARNWVVVEGLNTHYRYVNRNAKYSSTYIASEAPLLLNQISLVDPEDRKPTEVDWRYTEEGERVRVSLRTGRIIPLPLRQRRDGIVPEQWIDGPKDTSVDDTLEKTYTPSLKTFEEEIMDAMGIVETRRAKKSYWY
SIO_010081: MRPL24
subclass of: SO_0000673
so part of: MRPL24
location: join(<271580..271678,271759..271854,271933..272036,272110..272240,272320..272456)
location: region:271580-272456:1
so has part: feature:271580-271678:1:exon
so has part: feature:271759-271854:1:exon
so has part: feature:271933-272036:1:exon
so has part: feature:272110-272240:1:exon
so has part: feature:272320-272456:1:exon

XP_003204648.2
type: Protein
SIO_000068: ncbiprotein

position:272456:1
position: 272456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:271580-271678:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:271759-271854:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:271933-272036:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:272110-272240:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:272320-272456:1:exon

RRNAD1
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: RRNAD1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(272638..275281)
location: region:272638-275281:-1
so has part: feature:272638-275281:-1:exon
subclass of: SO_0000010

100541857
type: Gene
SIO_000068: ncbigene

position:272638:-1
position: 272638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:275281:-1
position: 275281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:272638-275281:-1:exon

RRNAD1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: RRNAD1
product: ribosomal RNA adenine dimethylase domain containing 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments, including 125 samples with support for all annotated introns
transcript id: XM_031556924.1
SIO_010081: RRNAD1
subclass of: SO_0000673
so part of: RRNAD1
location: complement(join(272638..272859,272924..273111,273196..273932,274015..274077,274153..274449,274526..274656,274948..275281))
location: region:272638-275281:-1
so has part: feature:274948-275281:-1:exon
so has part: feature:274526-274656:-1:exon
so has part: feature:274153-274449:-1:exon
so has part: feature:274015-274077:-1:exon
so has part: feature:273196-273932:-1:exon
so has part: feature:272924-273111:-1:exon
so has part: feature:272638-272859:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:274948-275281:-1:exon

position:274948:-1
position: 274948
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:274526-274656:-1:exon

position:274526:-1
position: 274526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:274656:-1
position: 274656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:274153-274449:-1:exon

position:274153:-1
position: 274153
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:274449:-1
position: 274449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:274015-274077:-1:exon

position:274015:-1
position: 274015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:274077:-1
position: 274077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:273196-273932:-1:exon

position:273196:-1
position: 273196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:273932:-1
position: 273932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:272924-273111:-1:exon

position:272924:-1
position: 272924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:273111:-1
position: 273111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:272638-272859:-1:exon

position:272859:-1
position: 272859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RRNAD1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: RRNAD1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: protein RRNAD1
translation: MPPPQEVPVLTVPGRDATGGLDDPKGDVEDEVRHGETXQRPTLPPPPTEAETAGNGSAPAPTRLRATRTQPXAPAQWGDGRTARAPWAPSGRLRMRGGAAGTRRGRAVTSERDITAMAGAPRPPXHWEQQRAANIVRLLSLYRPLLDSYIIDFFTEGLWAKLPPAWQAALEVADPPQLAAMLLGTGGMVGQGTVWPLSLLAFTTAVHALSFPRGQLGDAPRPPCQSPHLHPLLRRHVKPKKQHEIWRLGKVLQRLSQATGCEHVVDVGAGQGHLSRFLAFSLGLSITAVEGDGRLVSLAEHFDQELLRELGKAQARGDSRRLQPSQHHPNTARDPTDPASLCPRRPQHVAGWLDPQAPGQEFLLAPTPGPALAARNPLAWPVDSEQVLLTGLHACGDLSVALLRHFARSPQVAAVTSAACCYMKLSTCPEPTASNLPGYPLSAWVAGLPGHTLSYRAREAACHAVEEYTERLRRDSECLRIHCYRAVLETLIQAADPSKKHLGVQTVKKAHTLSFPEYARLGLTLVGLDSAAVPLDSESVCAMLCQQHKVVAFFSLVLLLAPLVETLILLDRLLYLREQGFQCALVPLFNPRFSPRNLVLVAARVPLDAVLSGLDKDIREDEDMVKGGGGQGQG
SIO_010081: RRNAD1
subclass of: SO_0000673
so part of: RRNAD1
location: complement(join(272693..272859,272924..273111,273196..273932,274015..274077,274153..274449,274526..274656,274948..275266))
location: region:272693-275266:-1
so has part: feature:274948-275266:-1:exon
so has part: feature:274526-274656:-1:exon
so has part: feature:274153-274449:-1:exon
so has part: feature:274015-274077:-1:exon
so has part: feature:273196-273932:-1:exon
so has part: feature:272924-273111:-1:exon
so has part: feature:272693-272859:-1:exon

XP_031412784.1
type: Protein
SIO_000068: ncbiprotein

position:272693:-1
position: 272693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:275266:-1
position: 275266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:274948-275266:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:274526-274656:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:274153-274449:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:274015-274077:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:273196-273932:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:272924-273111:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:272693-272859:-1:exon

CRABP2
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: CRABP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 281502..284781
location: region:281502-284781:1
so has part: feature:281502-284781:1:exon
subclass of: SO_0000010

100545194
type: Gene
SIO_000068: ncbigene

position:281502:1
position: 281502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:284781:1
position: 284781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:281502-284781:1:exon

CRABP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: CRABP2
product: cellular retinoic acid binding protein 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 152 samples with support for all annotated introns
transcript id: XM_003213787.3
SIO_010081: CRABP2
subclass of: SO_0000673
so part of: CRABP2
location: join(281502..281727,283576..283754,284092..284208,284294..284781)
location: region:281502-284781:1
so has part: feature:281502-281727:1:exon
so has part: feature:283576-283754:1:exon
so has part: feature:284092-284208:1:exon
so has part: feature:284294-284781:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:281502-281727:1:exon

position:281727:1
position: 281727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:283576-283754:1:exon

position:283576:1
position: 283576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:283754:1
position: 283754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:284092-284208:1:exon

position:284092:1
position: 284092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:284208:1
position: 284208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:284294-284781:1:exon

position:284294:1
position: 284294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CRABP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: CRABP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cellular retinoic acid-binding protein 2
translation: MPNFSGNWKMKSSENFEELLKALGVNMMLRKIAVAAASKPAVEIKQDGESFYIKTSTTVRTTEISFRIGEEFEEQTVDGRPCKSLAKWESENKMVCEQRLLKGEGPRTGWSRELTNDGELILTMTADDVVCTRVYIRE
SIO_010081: CRABP2
subclass of: SO_0000673
so part of: CRABP2
location: join(281658..281727,283576..283754,284092..284208,284294..284344)
location: region:281658-284344:1
so has part: feature:281658-281727:1:exon
so has part: feature:283576-283754:1:exon
so has part: feature:284092-284208:1:exon
so has part: feature:284294-284344:1:exon

XP_003213835.1
type: Protein
SIO_000068: ncbiprotein

position:281658:1
position: 281658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:284344:1
position: 284344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:281658-281727:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:283576-283754:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:284092-284208:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:284294-284344:1:exon

LOC100548069
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC100548069
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(287772..290831)
location: region:287772-290831:-1
so has part: feature:287772-290831:-1:exon
subclass of: SO_0000010

100548069
type: Gene
SIO_000068: ncbigene

position:287772:-1
position: 287772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:290831:-1
position: 290831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:287772-290831:-1:exon

LOC100548069
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC100548069
product: dnaJ homolog subfamily A member 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 33 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 215 samples with support for all annotated introns
transcript id: XM_010723855.3
SIO_010081: LOC100548069
subclass of: SO_0000673
so part of: LOC100548069
location: complement(join(287772..288500,288585..288685,288896..289126,289207..289434,289512..289616,290383..290578,290666..290831))
location: region:287772-290831:-1
so has part: feature:290666-290831:-1:exon
so has part: feature:290383-290578:-1:exon
so has part: feature:289512-289616:-1:exon
so has part: feature:289207-289434:-1:exon
so has part: feature:288896-289126:-1:exon
so has part: feature:288585-288685:-1:exon
so has part: feature:287772-288500:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:290666-290831:-1:exon

position:290666:-1
position: 290666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:290383-290578:-1:exon

position:290383:-1
position: 290383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:290578:-1
position: 290578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:289512-289616:-1:exon

position:289512:-1
position: 289512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:289616:-1
position: 289616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:289207-289434:-1:exon

position:289207:-1
position: 289207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:289434:-1
position: 289434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:288896-289126:-1:exon

position:288896:-1
position: 288896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:289126:-1
position: 289126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:288585-288685:-1:exon

position:288585:-1
position: 288585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:288685:-1
position: 288685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:287772-288500:-1:exon

position:288500:-1
position: 288500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100548069
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC100548069
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dnaJ homolog subfamily A member 1-like
translation: MVKETGYYDLLGVRPGASLDEIKRAYRRLALRYHPDKNPSEGERFKQISQAYEVLSDAHKRALYDRGGERAMKEGGLGNRSSPGFGSPMDIFDLFFGGGVRMRGRADRRGKTVVHQLSVSLEDLYNGTTRKLSLQKNIICRKCGGCGVREGAQRRCPKCHGSGMEVRIHQLGPGVIQQIQTVCSQCQGQGEWIRPRDCCLTCNGRKVVREKKILSVHLDKGMKDGQKITFHEEGDQVPGLEPGDIIIVLDQKEHPVFRRSGDDLIVRREISLADALCGCRQVIRTLDNRTLLVASQPGDVIRPGDLKCIPNEGMPVYRSPFQKGKLILKFEVKFPEPGWLPTERLRQLQAFFPPQEEVMATEDTEEVELSDYTSHGSTGRRPHGEAYHEDDFEDGTRQHVQCQTS
SIO_010081: LOC100548069
subclass of: SO_0000673
so part of: LOC100548069
location: complement(join(288276..288500,288585..288685,288896..289126,289207..289434,289512..289616,290383..290578,290666..290797))
location: region:288276-290797:-1
so has part: feature:290666-290797:-1:exon
so has part: feature:290383-290578:-1:exon
so has part: feature:289512-289616:-1:exon
so has part: feature:289207-289434:-1:exon
so has part: feature:288896-289126:-1:exon
so has part: feature:288585-288685:-1:exon
so has part: feature:288276-288500:-1:exon

XP_010722157.1
type: Protein
SIO_000068: ncbiprotein

position:288276:-1
position: 288276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:290797:-1
position: 290797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:290666-290797:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:290383-290578:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:289512-289616:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:289207-289434:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:288896-289126:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:288585-288685:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:288276-288500:-1:exon

NES
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: NES
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(295238..303048)
location: region:295238-303048:-1
so has part: feature:295238-303048:-1:exon
subclass of: SO_0000010

100543652
type: Gene
SIO_000068: ncbigene

position:295238:-1
position: 295238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:303048:-1
position: 303048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:295238-303048:-1:exon

NES
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: NES
product: nestin
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 5 bases in 4 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 9 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 157 samples with support for all annotated introns
transcript id: XM_010723856.3
SIO_010081: NES
subclass of: SO_0000673
so part of: NES
location: complement(join(295238..299974,300500..300573,301160..301284,302138..303048))
location: region:295238-303048:-1
so has part: feature:302138-303048:-1:exon
so has part: feature:301160-301284:-1:exon
so has part: feature:300500-300573:-1:exon
so has part: feature:295238-299974:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:302138-303048:-1:exon

position:302138:-1
position: 302138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:301160-301284:-1:exon

position:301160:-1
position: 301160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:301284:-1
position: 301284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:300500-300573:-1:exon

position:300500:-1
position: 300500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:300573:-1
position: 300573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:295238-299974:-1:exon

position:299974:-1
position: 299974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NES
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: NES
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 5 bases in 4 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: nestin
translation: MLSMEGFVGARALGEESLQMWDLNKRLEAYLARVKFLEEENEGLRAEIQSTKESPAGDPRRARYEEELRSLRDALHRAFTEKCAAELARDNLYEEVQHVKSRCQKEQAAREEAKRQLSSSKKELEEERRAQIWLKERAVQLEKEVEALLEVHEEEKAGLDQELASFSQSLEGFRCAPVAFQPVEVEDYSKRLSEIWRGAVETYKAEVSQLERALGQAKENLWQVAEDNQQSQLQLRHLEKELVGLKVRKEMLEESLGQQWQEQHGEAEKFQLAIEALEQEKQSLQVQIAQVLEDRQQLMHLKMSLSLEVATYRTLLEAESTRLQMPPGEFKLANSLRDVKLEVSSSKHRASLAAFPRPEGVAQLCRTPGDALKALTPKSKSSSAQEFQKINSVLQAPRSWEPAAPSHAVPVLSPVPGSGGAESPAHECGAGEESPLQSPLSPEQLVSHALQDALKEMQDDAEAKEVPKFSATQSTRDGDLEDPMEEEEEAAGTQEMSVKGGTMSSSGLCLCSNVPTLLSATQSDAESQEKWEEERSKEEEMLNPLSSMESQEPGGEPWGGDTRGSRLEVGKEDMEATSMEALHVLEHKEQREPWSSSREDEECEFPDQEREMQEEESLQMEIEAACAVPVGSHPILPAGIHLQEDFVEREQKSEHQSPCELGAAAGEEREQKMCLEMRASSIEGAVPAAEGSAGSGEDTTGRESTGRARDEEEDKGREALGEEDPQAGKALGAKEVRQESTGLEEAEGMWEEPVDLWEEHRDPQDGHGDLQEEQEDLRVEHRDLQVEHGHTQEQHGDTQEEPRDLQVEHRDLQVEHGDLQEECGDLQEEHGDTQEEHRDLQVEHRDLQEENGDTQEEYRDLQEEHGDTQEEHRDLQVEHRDLHVEHRDLQEEHGDLQVEHRDLQVEHGDTQEEHRDLQEEHRDLQVEHRDLQEEHGDIQEEHRDLQVEHGDLQVEHRDLQVEHGDTQEEYRDLQKEHGDIQEEHRDLQEEHGDTQEEHRDLQEEHRDLQVEHRDLQEEHGDIQEEHRDLQVEHGDIQEEHRDLQVEHGDTQDEYRDLQEEHGDIQEEHRDLQVEHGDLQERYGDTQEEHKDPQEEHGDLWEEHGDPQEEHGDLWEEHGVLKEEHGDLQEELGDLQVEHGDLQVEHGGLQVEHGGLQEEPGEPWVQCGEQGSAEDGLEQDMVLQPGEGAWGSEDNDIEQKQQAQDWEETAEDEEETEVDTVTSQEPAQVDDNPYAEAAENEEGDVTSPTAMEEAQEGEDDGDAGSEVQSQQQLQGTAGQEAEPAPVQEEMRYGDTGEAPRDPQEPAETLEVQDEELSSEPVELERGSLDTAVLQQDLGNGAESDEPMKEDIESEDAQLDEPKPCRMELEDTLLNSTPLCAYSGEVLETDPNPPSSGGDGEIEPEMALEEEGELRGSDEAVVHAETESCEESGMELSSAPECIEEEEGYFIVSAPNQEGSSIEEAENLEEFEEIKVEAAEDRKDELTAPAVASPVLEDEGHLEPFGEEAEDVKMPTGELEIPKQEDEEDAGGFAAELEEGLAVPMDEGLSEGHTDKTILGDEGLGEEDVQDSDNPPATETSNTDPSNTDPPPGTMLEHGSGMEAAEYLPDVPTQMPEDMKDSDILEIVEQALEFNQELVLGAKVAKDGEGDDDTQPPQEEEGGSSPTSSSDEQPTVQEAVAEPERTKNGEQNGLHRQASLEDLAEFTEEGLNGITHPAEEAPAAHTLPLPSKHSGAEPVPPLSPLQTESCAQSRSPGPLGRSDGGGPHSPTTIGHLP
SIO_010081: NES
subclass of: SO_0000673
so part of: NES
location: complement(join(295654..299974,300500..300573,301160..301284,302138..302950))
location: region:295654-302950:-1
so has part: feature:302138-302950:-1:exon
so has part: feature:301160-301284:-1:exon
so has part: feature:300500-300573:-1:exon
so has part: feature:295654-299974:-1:exon

XP_010722158.1
type: Protein
SIO_000068: ncbiprotein

position:295654:-1
position: 295654
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:302950:-1
position: 302950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:302138-302950:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:301160-301284:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:300500-300573:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:295654-299974:-1:exon

BCAN
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: BCAN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 310377..318651
location: region:310377-318651:1
so has part: feature:310377-318651:1:exon
subclass of: SO_0000010

104914403
type: Gene
SIO_000068: ncbigene

position:310377:1
position: 310377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:318651:1
position: 318651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:310377-318651:1:exon

BCAN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: BCAN
product: brevican
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
transcript id: XM_010723857.3
SIO_010081: BCAN
subclass of: SO_0000673
so part of: BCAN
location: join(310377..310617,310736..311128,311214..311388,311477..311604,312076..312369,313301..313729,314232..314414,314589..315021,316643..316750,316904..317062,317588..317670,317902..318046,318190..318372,318461..318651)
location: region:310377-318651:1
so has part: feature:310377-310617:1:exon
so has part: feature:310736-311128:1:exon
so has part: feature:311214-311388:1:exon
so has part: feature:311477-311604:1:exon
so has part: feature:312076-312369:1:exon
so has part: feature:313301-313729:1:exon
so has part: feature:314232-314414:1:exon
so has part: feature:314589-315021:1:exon
so has part: feature:316643-316750:1:exon
so has part: feature:316904-317062:1:exon
so has part: feature:317588-317670:1:exon
so has part: feature:317902-318046:1:exon
so has part: feature:318190-318372:1:exon
so has part: feature:318461-318651:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:310377-310617:1:exon

position:310617:1
position: 310617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:310736-311128:1:exon

position:310736:1
position: 310736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:311128:1
position: 311128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:311214-311388:1:exon

position:311214:1
position: 311214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:311388:1
position: 311388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:311477-311604:1:exon

position:311477:1
position: 311477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:311604:1
position: 311604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:312076-312369:1:exon

position:312076:1
position: 312076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:312369:1
position: 312369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:313301-313729:1:exon

position:313301:1
position: 313301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:313729:1
position: 313729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:314232-314414:1:exon

position:314232:1
position: 314232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:314414:1
position: 314414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:314589-315021:1:exon

position:314589:1
position: 314589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:315021:1
position: 315021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:316643-316750:1:exon

position:316643:1
position: 316643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:316750:1
position: 316750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:316904-317062:1:exon

position:316904:1
position: 316904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:317062:1
position: 317062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:317588-317670:1:exon

position:317588:1
position: 317588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:317670:1
position: 317670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:317902-318046:1:exon

position:317902:1
position: 317902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:318046:1
position: 318046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:318190-318372:1:exon

position:318190:1
position: 318190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:318372:1
position: 318372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:318461-318651:1:exon

position:318461:1
position: 318461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

BCAN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: BCAN
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: brevican core protein
translation: MMPSCITPCMQAPVSPSPPSCRELEVIMLLCSSKPLLDFCSPLTGHRMASVLPLLLLWVFAPTVVPEVLSPEDVTDDLKALQVSIPRHPALHAVLAGDVTIPCLITYLAPLPTASTAGRRAVLGAPRVKWTFISEGREAEILVARGERVKVSEDYRLRASLPVFHQRYTDASLLLTELRPNDSGIYRCDVQHGIEDGHDILDLRVKGVVFHYRGGSTRYTYTFAEAQEACTAISASIATPEQLYAAYLGGYEQCDAGWIADQTVRYPIHTPREACYGDMNGFPGVRNYGVVDPEDMYDVYCYAEDVPGEIFLETAPDKFTLEEAVARCRAQGAVLASTGQLYAAWSAGLDACNPGWLADGSVRYPIVTPRERCGGALPGVKTIFQFRNQTGFPDAQSRYDAYCFREGTNSFPEAAGKYQAREPEGLQEIVTVAEKLEELQLPKAQVEIESRGAIYAVPFFKDVADAELEKPSLSPEDTRHPPVDTSSSSARGRHPSSAAPFPTAPAVPKAGIPHSCAVQPGSPSPADQDGATGTGGRCTEARQEPSRTEDGAALEWPLGSVLGEDFGNRAAESLGRGQEPGQPMKPNVQTLLVGTEGPSDALSPSVAAADIQEPSPSTGSRGAGGTSTPIHTLGAAEDPELSGDVTENPGASPLPPAPPQLQDDGEEQSGAPWLSSPTAPGDGGTAPATEVTPWHAEVPSSSDALQTPSTDRGMPAASSEEEEDEEEEEDEEERPMPSVATVEGFLAAVPGEPGGCIPNPCLNGGTCIEDGTHPTCLCLPGYGGSSCERPLKRCSPSWDSFQGACYKHFSTRRSWEDAESQCRHFGGHLATILTPEEQDFINEQYREYQWIGLNDRTIEGDFQWSDGSPLLYENWHPGQPDSYFLSGENCVVIVWHDGGRWSDVPCNYHLSYTCKMGLVQCGPPPTVSNARPFGKPKQRYEIGSITRYHCRHGFAPRRSPIIRCREDGIWERPQLSCRPGLAQHSED
SIO_010081: BCAN
subclass of: SO_0000673
so part of: BCAN
location: join(310392..310617,310736..311128,311214..311388,311477..311604,312076..312369,313301..313729,314232..314414,314589..315021,316643..316750,316904..317062,317588..317670,317902..318046,318190..318372,318461..318486)
location: region:310392-318486:1
so has part: feature:310392-310617:1:exon
so has part: feature:310736-311128:1:exon
so has part: feature:311214-311388:1:exon
so has part: feature:311477-311604:1:exon
so has part: feature:312076-312369:1:exon
so has part: feature:313301-313729:1:exon
so has part: feature:314232-314414:1:exon
so has part: feature:314589-315021:1:exon
so has part: feature:316643-316750:1:exon
so has part: feature:316904-317062:1:exon
so has part: feature:317588-317670:1:exon
so has part: feature:317902-318046:1:exon
so has part: feature:318190-318372:1:exon
so has part: feature:318461-318486:1:exon

XP_010722159.2
type: Protein
SIO_000068: ncbiprotein

position:310392:1
position: 310392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:318486:1
position: 318486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:310392-310617:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:310736-311128:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:311214-311388:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:311477-311604:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:312076-312369:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:313301-313729:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:314232-314414:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:314589-315021:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:316643-316750:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:316904-317062:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:317588-317670:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:317902-318046:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:318190-318372:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:318461-318486:1:exon

HAPLN2
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: HAPLN2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(319364..321694)
location: region:319364-321694:-1
so has part: feature:319364-321694:-1:exon
subclass of: SO_0000010

100543808
type: Gene
SIO_000068: ncbigene

position:319364:-1
position: 319364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:321694:-1
position: 321694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:319364-321694:-1:exon

HAPLN2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: HAPLN2
product: hyaluronan and proteoglycan link protein 2
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_019623112.1
SIO_010081: HAPLN2
subclass of: SO_0000673
so part of: HAPLN2
location: complement(join(319364..320150,320237..320422,320583..320699,320845..321195,321404..321694))
location: region:319364-321694:-1
so has part: feature:321404-321694:-1:exon
so has part: feature:320845-321195:-1:exon
so has part: feature:320583-320699:-1:exon
so has part: feature:320237-320422:-1:exon
so has part: feature:319364-320150:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:321404-321694:-1:exon

position:321404:-1
position: 321404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:320845-321195:-1:exon

position:320845:-1
position: 320845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:321195:-1
position: 321195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:320583-320699:-1:exon

position:320583:-1
position: 320583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:320699:-1
position: 320699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:320237-320422:-1:exon

position:320237:-1
position: 320237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:320422:-1
position: 320422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:319364-320150:-1:exon

position:320150:-1
position: 320150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HAPLN2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: HAPLN2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: hyaluronan and proteoglycan link protein 2
translation: MVAANVPAASPSLSCCVALTPLLPPGFLQSPALKMHRVLLASLWLLAASPTSSIFQKPTGSPATPRLQYLLEPLHTAVHTQRGATATLPCVLRALPRNYRVKWSKVEPANYGENVIIITNGLYHKNYGPLSPRVRLRHSHRYDASLTITDVTLEDEGRYRCQLVNGLEDESVSLTLHLEGVVFPYQPINGRYRFNYHEAKRACEQQDARLATYQQLYKAWMEGLDWCNAGWVLDGTVHYPIINSREPCGGRLLLPGIRSYGAKDKQRDRFDAFCFTSALQGEVYFIRGHLNFKEAGQACRNHGATIAKVGQLYSAWKFLGLDRCDGGWLADGSVRYPITTPRQRCGGLPEPGVRSFGFPSKELRTYGTYCFVGT
SIO_010081: HAPLN2
subclass of: SO_0000673
so part of: HAPLN2
location: complement(join(319867..320150,320237..320422,320583..320699,320845..321195,321404..321592))
location: region:319867-321592:-1
so has part: feature:321404-321592:-1:exon
so has part: feature:320845-321195:-1:exon
so has part: feature:320583-320699:-1:exon
so has part: feature:320237-320422:-1:exon
so has part: feature:319867-320150:-1:exon

XP_019478657.1
type: Protein
SIO_000068: ncbiprotein

position:319867:-1
position: 319867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:321592:-1
position: 321592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:321404-321592:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:320845-321195:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:320583-320699:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:320237-320422:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:319867-320150:-1:exon

RHBG
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: RHBG
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 323223..327612
location: region:323223-327612:1
so has part: feature:323223-327612:1:exon
subclass of: SO_0000010

100543960
type: Gene
SIO_000068: ncbigene

position:323223:1
position: 323223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:327612:1
position: 327612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:323223-327612:1:exon

RHBG
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: RHBG
product: Rh family B glycoprotein
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 200 samples with support for all annotated introns
transcript id: XM_010723860.3
SIO_010081: RHBG
subclass of: SO_0000673
so part of: RHBG
location: join(323223..323650,324495..324681,325080..325230,325353..325500,325795..325961,326164..326301,326438..326571,326669..326790,326979..327052,327192..327612)
location: region:323223-327612:1
so has part: feature:323223-323650:1:exon
so has part: feature:324495-324681:1:exon
so has part: feature:325080-325230:1:exon
so has part: feature:325353-325500:1:exon
so has part: feature:325795-325961:1:exon
so has part: feature:326164-326301:1:exon
so has part: feature:326438-326571:1:exon
so has part: feature:326669-326790:1:exon
so has part: feature:326979-327052:1:exon
so has part: feature:327192-327612:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:323223-323650:1:exon

position:323650:1
position: 323650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:324495-324681:1:exon

position:324495:1
position: 324495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:324681:1
position: 324681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:325080-325230:1:exon

position:325080:1
position: 325080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:325230:1
position: 325230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:325353-325500:1:exon

position:325353:1
position: 325353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:325500:1
position: 325500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:325795-325961:1:exon

position:325795:1
position: 325795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:325961:1
position: 325961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:326164-326301:1:exon

position:326164:1
position: 326164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:326301:1
position: 326301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:326438-326571:1:exon

position:326438:1
position: 326438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:326571:1
position: 326571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:326669-326790:1:exon

position:326669:1
position: 326669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:326790:1
position: 326790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:326979-327052:1:exon

position:326979:1
position: 326979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:327052:1
position: 327052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:327192-327612:1:exon

position:327192:1
position: 327192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RHBG
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: RHBG
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ammonium transporter Rh type B
translation: MAERAAARLHLSGLCFFLQLLTIVLFATFVRYSPESSNLCSTEPSCSQRDPSPTLGYPRFRDAHLRALLGFGFLLAFLSRYGVGSVAGSLLIVAFTIQWAILAQGLFYFSQNSKIYVSTQSMVSADFCTAAILISAGAVLGRVNPIQMLLMALLEVPLFACNEYVLRSILGVSDSGGSLTIHTFGAYFGLTVSRVLHQPHKDKRKEEQDVGHQPDVFAVVGIICLWIFWPSFASATTTHDSAEPWAVLNLYFSLAASTLATFVLSPILYEKGTLQVAQLQDATLASAAVMGMAGEMLSTPFGALTAGFLASQLSLLSSRFLSPILRSRLKTEDTCGVHNVHGLPGILGTFLGILLTALATADVYGDRLQLVFPLVADGSRTNAEQAQWQLCGLLVTLLLAASGGRLTGLLLRTKVLRSPPEGNESESKVLREMDEDGCDRGGSSEERGNIA
SIO_010081: RHBG
subclass of: SO_0000673
so part of: RHBG
location: join(323476..323650,324495..324681,325080..325230,325353..325500,325795..325961,326164..326301,326438..326571,326669..326790,326979..327052,327192..327251)
location: region:323476-327251:1
so has part: feature:323476-323650:1:exon
so has part: feature:324495-324681:1:exon
so has part: feature:325080-325230:1:exon
so has part: feature:325353-325500:1:exon
so has part: feature:325795-325961:1:exon
so has part: feature:326164-326301:1:exon
so has part: feature:326438-326571:1:exon
so has part: feature:326669-326790:1:exon
so has part: feature:326979-327052:1:exon
so has part: feature:327192-327251:1:exon

XP_010722162.1
type: Protein
SIO_000068: ncbiprotein

position:323476:1
position: 323476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:327251:1
position: 327251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:323476-323650:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:324495-324681:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:325080-325230:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:325353-325500:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:325795-325961:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:326164-326301:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:326438-326571:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:326669-326790:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:326979-327052:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:327192-327251:1:exon

MEF2D
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: MEF2D
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(392642..424746)
location: region:392642-424746:-1
so has part: feature:392642-424746:-1:exon
subclass of: SO_0000010

100538498
type: Gene
SIO_000068: ncbigene

position:392642:-1
position: 392642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:424746:-1
position: 424746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392642-424746:-1:exon

MEF2D
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: MEF2D
product: myocyte enhancer factor 2D, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 168 samples with support for all annotated introns
transcript id: XM_010723864.3
SIO_010081: MEF2D
subclass of: SO_0000673
so part of: MEF2D
location: complement(join(392642..394774,395706..395946,398005..398131,400971..401161,403460..403516,405407..405617,408565..408702,420840..421043,424453..424746))
location: region:392642-424746:-1
so has part: feature:424453-424746:-1:exon
so has part: feature:420840-421043:-1:exon
so has part: feature:408565-408702:-1:exon
so has part: feature:405407-405617:-1:exon
so has part: feature:403460-403516:-1:exon
so has part: feature:400971-401161:-1:exon
so has part: feature:398005-398131:-1:exon
so has part: feature:395706-395946:-1:exon
so has part: feature:392642-394774:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:424453-424746:-1:exon

position:424453:-1
position: 424453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:420840-421043:-1:exon

position:420840:-1
position: 420840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:421043:-1
position: 421043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:408565-408702:-1:exon

position:408565:-1
position: 408565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:408702:-1
position: 408702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:405407-405617:-1:exon

position:405407:-1
position: 405407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:405617:-1
position: 405617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:403460-403516:-1:exon

position:403460:-1
position: 403460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:403516:-1
position: 403516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:400971-401161:-1:exon

position:400971:-1
position: 400971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:401161:-1
position: 401161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:398005-398131:-1:exon

position:398005:-1
position: 398005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:398131:-1
position: 398131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:395706-395946:-1:exon

position:395706:-1
position: 395706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:395946:-1
position: 395946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:392642-394774:-1:exon

position:394774:-1
position: 394774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MEF2D
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: MEF2D
product: myocyte enhancer factor 2D, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 67 samples with support for all annotated introns
transcript id: XM_010723862.3
SIO_010081: MEF2D
subclass of: SO_0000673
so part of: MEF2D
location: complement(join(392642..394774,395706..395946,398005..398131,400714..400734,400971..401161,403460..403516,405407..405617,408565..408702,420840..421043,424453..424746))
location: region:392642-424746:-1
so has part: feature:424453-424746:-1:exon
so has part: feature:420840-421043:-1:exon
so has part: feature:408565-408702:-1:exon
so has part: feature:405407-405617:-1:exon
so has part: feature:403460-403516:-1:exon
so has part: feature:400971-401161:-1:exon
so has part: feature:400714-400734:-1:exon
so has part: feature:398005-398131:-1:exon
so has part: feature:395706-395946:-1:exon
so has part: feature:392642-394774:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:424453-424746:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:420840-421043:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:408565-408702:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:405407-405617:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:403460-403516:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:400971-401161:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:400714-400734:-1:exon

position:400714:-1
position: 400714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:400734:-1
position: 400734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:398005-398131:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:395706-395946:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:392642-394774:-1:exon

MEF2D
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: MEF2D
product: myocyte enhancer factor 2D, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 86 samples with support for all annotated introns
transcript id: XM_010723861.3
SIO_010081: MEF2D
subclass of: SO_0000673
so part of: MEF2D
location: complement(join(392642..394774,395706..395946,398005..398134,400714..400734,400971..401161,403460..403516,405407..405617,408565..408702,420840..421043,424453..424746))
location: region:392642-424746:-1
so has part: feature:424453-424746:-1:exon
so has part: feature:420840-421043:-1:exon
so has part: feature:408565-408702:-1:exon
so has part: feature:405407-405617:-1:exon
so has part: feature:403460-403516:-1:exon
so has part: feature:400971-401161:-1:exon
so has part: feature:400714-400734:-1:exon
so has part: feature:398005-398134:-1:exon
so has part: feature:395706-395946:-1:exon
so has part: feature:392642-394774:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:424453-424746:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:420840-421043:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:408565-408702:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:405407-405617:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:403460-403516:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:400971-401161:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:400714-400734:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:398005-398134:-1:exon

position:398134:-1
position: 398134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:395706-395946:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:392642-394774:-1:exon

MEF2D
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: MEF2D
product: myocyte enhancer factor 2D, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 193 samples with support for all annotated introns
transcript id: XM_010723863.3
SIO_010081: MEF2D
subclass of: SO_0000673
so part of: MEF2D
location: complement(join(392642..394774,395706..395946,398005..398134,400971..401161,403460..403516,405407..405617,408565..408702,420840..421043,424453..424745))
location: region:392642-424745:-1
so has part: feature:424453-424745:-1:exon
so has part: feature:420840-421043:-1:exon
so has part: feature:408565-408702:-1:exon
so has part: feature:405407-405617:-1:exon
so has part: feature:403460-403516:-1:exon
so has part: feature:400971-401161:-1:exon
so has part: feature:398005-398134:-1:exon
so has part: feature:395706-395946:-1:exon
so has part: feature:392642-394774:-1:exon

position:424745:-1
position: 424745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:424453-424745:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:420840-421043:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:408565-408702:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:405407-405617:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:403460-403516:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:400971-401161:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:398005-398134:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:395706-395946:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:392642-394774:-1:exon

MEF2D
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: MEF2D
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2D isoform X4
translation: MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGDDSIDQSPLMEDKYRKGSEDLDILFKRYGSAVPTPNFAMPVTVPVTNQNTLQFSSPGSSLVTQSLVTSSLTDPRLLSPQQPALQRNTVSPGLPQRPASAGAMLGGDLNNTNGACPSPVGNGYVSARASPGLLPVSNGSTLGKIIPAKSPPPPPHSTQLATNSRKPDLRVITSQSGKGLMHHLNTQRLGVSQATHSLTTPVVSVATPSLLTQGLPFSAMPTAYNTDYQLTSAELSSLPAFSSPGGLSLGNISAWQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHLVPVSLGNLIQGSHLSHTTTLTVNTNPNISIKSEPVSPNRERNTATPLSTFPHQPRHEPTGRSPVDSLSSNTSSYEGSERDDPTRTDFSSSLGLLRPGGEAEGESPSVKRMRLDTWVT
SIO_010081: MEF2D
subclass of: SO_0000673
so part of: MEF2D
location: complement(join(394447..394774,395706..395946,398005..398131,400971..401161,403460..403516,405407..405617,408565..408702,420840..421043,424453..424506))
location: region:394447-424506:-1
so has part: feature:424453-424506:-1:exon
so has part: feature:420840-421043:-1:exon
so has part: feature:408565-408702:-1:exon
so has part: feature:405407-405617:-1:exon
so has part: feature:403460-403516:-1:exon
so has part: feature:400971-401161:-1:exon
so has part: feature:398005-398131:-1:exon
so has part: feature:395706-395946:-1:exon
so has part: feature:394447-394774:-1:exon

XP_010722166.1
type: Protein
SIO_000068: ncbiprotein

position:394447:-1
position: 394447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:424506:-1
position: 424506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:424453-424506:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:420840-421043:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:408565-408702:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:405407-405617:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:403460-403516:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:400971-401161:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:398005-398131:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:395706-395946:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:394447-394774:-1:exon

MEF2D
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: MEF2D
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2D isoform X3
translation: MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGDDSIDQSPLMEDKYRKGSEDLDILFKRYGSAVPTPNFAMPVTVPVTNQNTLQFSSPGSSLVTQSLVTSSLTDPRLLSPQQPALQRNTVSPGLPQRPASAGAMLGGDLNNTNGACPSPVGNGYVSARASPGLLPVSNGSTLGKIIPAKSPPPPPHSTQLATNSRKPDLRVITSQSGKGLMHHLQNTQRLGVSQATHSLTTPVVSVATPSLLTQGLPFSAMPTAYNTDYQLTSAELSSLPAFSSPGGLSLGNISAWQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHLVPVSLGNLIQGSHLSHTTTLTVNTNPNISIKSEPVSPNRERNTATPLSTFPHQPRHEPTGRSPVDSLSSNTSSYEGSERDDPTRTDFSSSLGLLRPGGEAEGESPSVKRMRLDTWVT
SIO_010081: MEF2D
subclass of: SO_0000673
so part of: MEF2D
location: complement(join(394447..394774,395706..395946,398005..398134,400971..401161,403460..403516,405407..405617,408565..408702,420840..421043,424453..424506))
location: region:394447-424506:-1
so has part: feature:424453-424506:-1:exon
so has part: feature:420840-421043:-1:exon
so has part: feature:408565-408702:-1:exon
so has part: feature:405407-405617:-1:exon
so has part: feature:403460-403516:-1:exon
so has part: feature:400971-401161:-1:exon
so has part: feature:398005-398134:-1:exon
so has part: feature:395706-395946:-1:exon
so has part: feature:394447-394774:-1:exon

XP_010722165.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:424453-424506:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:420840-421043:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:408565-408702:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:405407-405617:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:403460-403516:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:400971-401161:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:398005-398134:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:395706-395946:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:394447-394774:-1:exon

MEF2D
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: MEF2D
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2D isoform X2
translation: MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGDDSIDQSPLMEDKYRKGSEDLDILFKRYGSAVPTPNFAMPVTVPVTNQNTLQFSSPGSSLVTQSLVTSSLTDPRLLSPQQPALQRNTVSPGLPQRPASAGAMLGGDLNNTNGACPSPVGNGYVSARASPGLLPVSNGSTLGKIIPAKSPPPPPHSTQLATNSRKPDLRVITSQSGKGLMHHLTEDHLALNTQRLGVSQATHSLTTPVVSVATPSLLTQGLPFSAMPTAYNTDYQLTSAELSSLPAFSSPGGLSLGNISAWQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHLVPVSLGNLIQGSHLSHTTTLTVNTNPNISIKSEPVSPNRERNTATPLSTFPHQPRHEPTGRSPVDSLSSNTSSYEGSERDDPTRTDFSSSLGLLRPGGEAEGESPSVKRMRLDTWVT
SIO_010081: MEF2D
subclass of: SO_0000673
so part of: MEF2D
location: complement(join(394447..394774,395706..395946,398005..398131,400714..400734,400971..401161,403460..403516,405407..405617,408565..408702,420840..421043,424453..424506))
location: region:394447-424506:-1
so has part: feature:424453-424506:-1:exon
so has part: feature:420840-421043:-1:exon
so has part: feature:408565-408702:-1:exon
so has part: feature:405407-405617:-1:exon
so has part: feature:403460-403516:-1:exon
so has part: feature:400971-401161:-1:exon
so has part: feature:400714-400734:-1:exon
so has part: feature:398005-398131:-1:exon
so has part: feature:395706-395946:-1:exon
so has part: feature:394447-394774:-1:exon

XP_010722164.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:424453-424506:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:420840-421043:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:408565-408702:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:405407-405617:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:403460-403516:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:400971-401161:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:400714-400734:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:398005-398131:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:395706-395946:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:394447-394774:-1:exon

MEF2D
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: MEF2D
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2D isoform X1
translation: MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGDDSIDQSPLMEDKYRKGSEDLDILFKRYGSAVPTPNFAMPVTVPVTNQNTLQFSSPGSSLVTQSLVTSSLTDPRLLSPQQPALQRNTVSPGLPQRPASAGAMLGGDLNNTNGACPSPVGNGYVSARASPGLLPVSNGSTLGKIIPAKSPPPPPHSTQLATNSRKPDLRVITSQSGKGLMHHLTEDHLALQNTQRLGVSQATHSLTTPVVSVATPSLLTQGLPFSAMPTAYNTDYQLTSAELSSLPAFSSPGGLSLGNISAWQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHLVPVSLGNLIQGSHLSHTTTLTVNTNPNISIKSEPVSPNRERNTATPLSTFPHQPRHEPTGRSPVDSLSSNTSSYEGSERDDPTRTDFSSSLGLLRPGGEAEGESPSVKRMRLDTWVT
SIO_010081: MEF2D
subclass of: SO_0000673
so part of: MEF2D
location: complement(join(394447..394774,395706..395946,398005..398134,400714..400734,400971..401161,403460..403516,405407..405617,408565..408702,420840..421043,424453..424506))
location: region:394447-424506:-1
so has part: feature:424453-424506:-1:exon
so has part: feature:420840-421043:-1:exon
so has part: feature:408565-408702:-1:exon
so has part: feature:405407-405617:-1:exon
so has part: feature:403460-403516:-1:exon
so has part: feature:400971-401161:-1:exon
so has part: feature:400714-400734:-1:exon
so has part: feature:398005-398134:-1:exon
so has part: feature:395706-395946:-1:exon
so has part: feature:394447-394774:-1:exon

XP_010722163.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:424453-424506:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:420840-421043:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:408565-408702:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:405407-405617:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:403460-403516:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:400971-401161:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:400714-400734:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:398005-398134:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:395706-395946:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:394447-394774:-1:exon

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 9103
estimated length: unknown
gap type: between scaffolds
so part of: sequence
location: 435152..435251
location: region:435152-435251:1
so has part: feature:435152-435251:1:region

position:435152:1
position: 435152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:435251:1
position: 435251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:435152-435251:1:region

LOC100548468
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC100548468
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 435541..443131
location: region:435541-443131:1
so has part: feature:435541-443131:1:exon
subclass of: SO_0000010

100548468
type: Gene
SIO_000068: ncbigene

position:435541:1
position: 435541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:443131:1
position: 443131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:435541-443131:1:exon

LOC100548468
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC100548468
product: ETS translocation variant 3-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031556907.1
SIO_010081: LOC100548468
subclass of: SO_0000673
so part of: LOC100548468
location: join(435541..435668,436656..436893,438585..438700,441183..442351,443117..443131)
location: region:435541-443131:1
so has part: feature:435541-435668:1:exon
so has part: feature:436656-436893:1:exon
so has part: feature:438585-438700:1:exon
so has part: feature:441183-442351:1:exon
so has part: feature:443117-443131:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:435541-435668:1:exon

position:435668:1
position: 435668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:436656-436893:1:exon

position:436656:1
position: 436656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:436893:1
position: 436893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:438585-438700:1:exon

position:438585:1
position: 438585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:438700:1
position: 438700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:441183-442351:1:exon

position:441183:1
position: 441183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:442351:1
position: 442351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:443117-443131:1:exon

position:443117:1
position: 443117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100548468
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC100548468
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ETS translocation variant 3-like
translation: MKAGCSIVDKPEGGGGYHFPEWAYKTESSPGSRQIQLWHFILELLQKEEFRHVIAWQQGEYGEFVIKDPDEVARLWGRRKCKPQMNYDKLSRALRYYYNKRILHKTKGKRFTYKFNFNKLVMPNYPFINIRPNGVVPQSAPPVPTASSRFHFPPLDSHSPTDDAQPGRFSGPSLVPSNPEALGDGGERKPDLPELEDGSADWRRGVDLMASRNTASAGGVNHQKRKPDIMLPLFTRPGIYPDPHSPFAVSPLPGRGGVLNVPISPALSLTPTLFSYSPSPGLSPFTGSSCFSFNPEEMKHYLHSQACSVFNYHLSPRTFPRYPGLMVPPLQCQMPMEEQPQFPIKLQPPPVGRKNRERLESTEESATPQLASPPPPRVKLEPPVDKEAEREEPPAKGKDKSEKEENSSMAAPSTSLEEEKGPVFARPAAPSWHPAPLVPTQALGPAEEPQDQGESSGEKPPREPSGEPGAQEKREDALMPPKLRLKRRWNGDRQADAPEEHPNGRVPWNGVLGSPHLAAGPKARPGV
SIO_010081: LOC100548468
subclass of: SO_0000673
so part of: LOC100548468
location: join(435623..435668,436656..436893,438585..438700,441183..442351,443117..443131)
location: region:435623-443131:1
so has part: feature:435623-435668:1:exon
so has part: feature:436656-436893:1:exon
so has part: feature:438585-438700:1:exon
so has part: feature:441183-442351:1:exon
so has part: feature:443117-443131:1:exon

XP_031412767.1
type: Protein
SIO_000068: ncbiprotein

position:435623:1
position: 435623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:435623-435668:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:436656-436893:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:438585-438700:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:441183-442351:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:443117-443131:1:exon

LOC104914406
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914406
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 443531..452384
location: region:443531-452384:1
so has part: feature:443531-452384:1:exon
subclass of: SO_0000010

104914406
type: Gene
SIO_000068: ncbigene

position:443531:1
position: 443531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:452384:1
position: 452384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:443531-452384:1:exon

LOC104914406
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914406
product: SLAM family member 8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_010723870.3
SIO_010081: LOC104914406
subclass of: SO_0000673
so part of: LOC104914406
location: join(443531..443573,445408..445551,447641..447982,448241..448534,448641..448760,448842..448933,449037..449144,449377..450838,452249..452384)
location: region:443531-452384:1
so has part: feature:443531-443573:1:exon
so has part: feature:445408-445551:1:exon
so has part: feature:447641-447982:1:exon
so has part: feature:448241-448534:1:exon
so has part: feature:448641-448760:1:exon
so has part: feature:448842-448933:1:exon
so has part: feature:449037-449144:1:exon
so has part: feature:449377-450838:1:exon
so has part: feature:452249-452384:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:443531-443573:1:exon

position:443573:1
position: 443573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:445408-445551:1:exon

position:445408:1
position: 445408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:445551:1
position: 445551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:447641-447982:1:exon

position:447641:1
position: 447641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:447982:1
position: 447982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:448241-448534:1:exon

position:448241:1
position: 448241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:448534:1
position: 448534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:448641-448760:1:exon

position:448641:1
position: 448641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:448760:1
position: 448760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:448842-448933:1:exon

position:448842:1
position: 448842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:448933:1
position: 448933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:449037-449144:1:exon

position:449037:1
position: 449037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:449144:1
position: 449144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:449377-450838:1:exon

position:449377:1
position: 449377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:450838:1
position: 450838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:452249-452384:1:exon

position:452249:1
position: 452249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC104914406
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914406
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SLAM family member 8
translation: MTCFLLPDCVDIGRAAALLLLPISAAADSAHQSCTEQEWRGTWARSAARLPALLLALLGFAPELLFGQVRAQPQQVSGVLGGSVLLSPVLPPGSRVKEIEWSFSSGAGATIQVAEFGPGGFERPDPQDRFKQRLEMPNATALRIGALELGDSGVYGARIKLHPALVEDQSFNLSVYESVPKPRTHSQLLASTLEWCNLTLQCQGTGKGAVNVTWRRDNGRQELGTDRSQLSPDGTTLRLALQPGTANATYTCTVSNPADQKVVPFDLQSICRSGGGQVSFSKSGYIVLTLILLAVSLGGAFWCWRLNSEKSADPAATPTAPAEESPPEPQYTEIVHRSPPEGNDQGLRPPENNPEPTSTEKAPGSTVYEQIHQEPEDTAEEAPTALEHQDVTEGL
SIO_010081: LOC104914406
subclass of: SO_0000673
so part of: LOC104914406
location: join(443531..443573,445408..445551,447641..447982,448241..448534,448641..448760,448842..448933,449037..449144,449377..449421)
location: region:443531-449421:1
so has part: feature:443531-443573:1:exon
so has part: feature:445408-445551:1:exon
so has part: feature:447641-447982:1:exon
so has part: feature:448241-448534:1:exon
so has part: feature:448641-448760:1:exon
so has part: feature:448842-448933:1:exon
so has part: feature:449037-449144:1:exon
so has part: feature:449377-449421:1:exon

XP_010722172.3
type: Protein
SIO_000068: ncbiprotein

position:449421:1
position: 449421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:443531-443573:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:445408-445551:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:447641-447982:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:448241-448534:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:448641-448760:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:448842-448933:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:449037-449144:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:449377-449421:1:exon

KIRREL1
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: KIRREL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 450769..459896
location: region:450769-459896:1
so has part: feature:450769-459896:1:exon
subclass of: SO_0000010

100548318
type: Gene
SIO_000068: ncbigene

position:450769:1
position: 450769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:459896:1
position: 459896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:450769-459896:1:exon

KIRREL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: KIRREL1
product: kirre like nephrin family adhesion molecule 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 4 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 4 Proteins, and 77% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031556908.1
SIO_010081: KIRREL1
subclass of: SO_0000673
so part of: KIRREL1
location: join(450769..450838,452249..452569,452877..453155,453234..453508,454553..454975,455054..455204,455906..456011,456099..456246,456318..456445,456525..456651,456740..456839,456916..457114,457191..457298,457386..457525,457619..457696,458033..459896)
location: region:450769-459896:1
so has part: feature:450769-450838:1:exon
so has part: feature:452249-452569:1:exon
so has part: feature:452877-453155:1:exon
so has part: feature:453234-453508:1:exon
so has part: feature:454553-454975:1:exon
so has part: feature:455054-455204:1:exon
so has part: feature:455906-456011:1:exon
so has part: feature:456099-456246:1:exon
so has part: feature:456318-456445:1:exon
so has part: feature:456525-456651:1:exon
so has part: feature:456740-456839:1:exon
so has part: feature:456916-457114:1:exon
so has part: feature:457191-457298:1:exon
so has part: feature:457386-457525:1:exon
so has part: feature:457619-457696:1:exon
so has part: feature:458033-459896:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:450769-450838:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:452249-452569:1:exon

position:452569:1
position: 452569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:452877-453155:1:exon

position:452877:1
position: 452877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:453155:1
position: 453155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:453234-453508:1:exon

position:453234:1
position: 453234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:453508:1
position: 453508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:454553-454975:1:exon

position:454553:1
position: 454553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:454975:1
position: 454975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:455054-455204:1:exon

position:455054:1
position: 455054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:455204:1
position: 455204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:455906-456011:1:exon

position:455906:1
position: 455906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:456011:1
position: 456011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:456099-456246:1:exon

position:456099:1
position: 456099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:456246:1
position: 456246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:456318-456445:1:exon

position:456318:1
position: 456318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:456445:1
position: 456445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:456525-456651:1:exon

position:456525:1
position: 456525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:456651:1
position: 456651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:456740-456839:1:exon

position:456740:1
position: 456740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:456839:1
position: 456839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:456916-457114:1:exon

position:456916:1
position: 456916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:457114:1
position: 457114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:457191-457298:1:exon

position:457191:1
position: 457191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:457298:1
position: 457298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:457386-457525:1:exon

position:457386:1
position: 457386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:457525:1
position: 457525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:457619-457696:1:exon

position:457619:1
position: 457619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:457696:1
position: 457696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:458033-459896:1:exon

position:458033:1
position: 458033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

KIRREL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: KIRREL1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 4 bases in 2 codons; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:456115..456117,aa:OTHER)
product: LOW QUALITY PROTEIN: kin of IRRE-like protein 1
translation: MGQLCGRRCPFIPRLLVLLLVTTGTAAVQIKPVSGVLGHSVQLPLQLHPGSRVKRIIWSFGANASKKIEVAEYNLELSEHLKYNRQRLELFNKTTLQIGALEQGDSGVYDAHITYQSNEVDECSFNLTVYEPLPVPLIQHEILSYTAQNCSIILRCLVPAGSGAQTTWQHDNTSSATWRQSDNSDVLQVTISASALNAIFTCVAWNPAQERSKSMDLAELCAQDARRWRWPIYLAVLVGVVGALSIALYLLKRKRKAHKGGRCCGVKAAARGAAGRREGAVPIPHGLACPTAAACPEELLYSQVQRRDVEDRDEQPHSSTRLPVPICIIAFSSPWLFANSQALSSASISASTVQTHPPKLPSSLPGTLTFPQEPTLINKGFQSPPHGKVSDVSACISSPVPSAVPPEDPTIDGAPEILLRAGTPYNLTCRARSAKPAATIIWYRDGLQQDGAITTTEVLADGKRETTTSLLAINPTDLDIGRVFSCRSTNDAIPAGKETFVKLNVHHPPTVTLSIQPQTVQEGERVVFTCMATANPEIKGYRWAKGGXSLRMKENRYDTQVDYTFFTEPVSCEVHNDIGSTNVSTLVDVHFAPRIMVAPKPTVTDIGSDVTLTCMWSGNPPLTLTWTKKESNMVLSNSNQLYLKSVTQADAGQYICKAIVPRIGVGEREVTLYVNGPPIISSEVVQYAARGDRGKVECFIGSTPPRTIAWAWKENILEAGTLERYTVERTTMGSGVLSTLTINNVMEADFQTHYNCTAWNSFGPGTAIIQLEEKEVLPVGIIAGATIGASILVISFLVALACFLYRRRKGSRKDVTLRKLDIKVETVNREPLTLHADREEDTASVSTATRVMKAIYSSFKDDVDLKQDLRCDTIDTREEYELKDPTNGYYNVRAHEDRPASRTVLYADYRAPGPARYDARPPSRLSHSSGYAQLNTYSRGPASEYSAEAAASTGAPPGTAGGETASQLSYENYGGHAAFPAGGGYGGYRLGYGQPTSLERAPYDAYDPMGKYASATRFSYTSQHSDYGQRFQQRMQTHV
SIO_010081: KIRREL1
subclass of: SO_0000673
so part of: KIRREL1
location: join(450769..450838,452249..452569,452877..453155,453234..453508,454553..454975,455054..455204,455906..456011,456099..456246,456318..456445,456525..456651,456740..456839,456916..457114,457191..457298,457386..457525,457619..457696,458033..458503)
location: region:450769-458503:1
so has part: feature:450769-450838:1:exon
so has part: feature:452249-452569:1:exon
so has part: feature:452877-453155:1:exon
so has part: feature:453234-453508:1:exon
so has part: feature:454553-454975:1:exon
so has part: feature:455054-455204:1:exon
so has part: feature:455906-456011:1:exon
so has part: feature:456099-456246:1:exon
so has part: feature:456318-456445:1:exon
so has part: feature:456525-456651:1:exon
so has part: feature:456740-456839:1:exon
so has part: feature:456916-457114:1:exon
so has part: feature:457191-457298:1:exon
so has part: feature:457386-457525:1:exon
so has part: feature:457619-457696:1:exon
so has part: feature:458033-458503:1:exon

XP_031412768.1
type: Protein
SIO_000068: ncbiprotein

position:458503:1
position: 458503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:450769-450838:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:452249-452569:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:452877-453155:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:453234-453508:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:454553-454975:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:455054-455204:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:455906-456011:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:456099-456246:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:456318-456445:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:456525-456651:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:456740-456839:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:456916-457114:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:457191-457298:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:457386-457525:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:457619-457696:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:458033-458503:1:exon

LOC104914412
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914412
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(470630..474395)
location: region:470630-474395:-1
so has part: feature:470630-474395:-1:exon
subclass of: SO_0000010

104914412
type: Gene
SIO_000068: ncbigene

position:470630:-1
position: 470630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:474395:-1
position: 474395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:470630-474395:-1:exon

LOC104914412
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914412
product: natural killer cell receptor 2B4-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns
transcript id: XM_019623114.2
SIO_010081: LOC104914412
subclass of: SO_0000673
so part of: LOC104914412
location: complement(join(470630..471635,471890..472561,473867..474395))
location: region:470630-474395:-1
so has part: feature:473867-474395:-1:exon
so has part: feature:471890-472561:-1:exon
so has part: feature:470630-471635:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:473867-474395:-1:exon

position:473867:-1
position: 473867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:471890-472561:-1:exon

position:471890:-1
position: 471890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:472561:-1
position: 472561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:470630-471635:-1:exon

position:471635:-1
position: 471635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104914412
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914412
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: natural killer cell receptor 2B4-like
translation: MQQHGVALHALEMLLCIVLGVAGSGQEAEGCRDRAVLSGTDLQLLLEEPLPLEWTAVEWKVVLGAEPRQRILTAWKDEVEPENSSLSRRATFFWEPLSLQIHAVTKADSGNYSAEIEHSHGSILIKCFHVSVWGECLDLLPSSIPIPSNLSVPAEPVGSPHLERYVLQQEQGWCSFQLSCAVPGATAVSYSWSRDSEPLGNQSVLEVPKDVQPGLYVCNVSNPASWSTASIDMAAACTQTGDLSSALPKPGLFGAFPFCAVTVLLLLAVCIASCIAYWFSIWWKDGSDCSSPLGAGICLRRAGDGSAPGCWWWWWHFGQTSDILATTTVFYPHPLHIGQTHSNCSPQAPNSPLPATREADVAPFAGEEMEAPNSEAAGNGGYLAELFIPVPLPGYEILFPSAKQSRNHWQGVRMSTRAASPQEP
SIO_010081: LOC104914412
subclass of: SO_0000673
so part of: LOC104914412
location: complement(join(471112..471635,471890..472561,473867..473945))
location: region:471112-473945:-1
so has part: feature:473867-473945:-1:exon
so has part: feature:471890-472561:-1:exon
so has part: feature:471112-471635:-1:exon

XP_019478659.1
type: Protein
SIO_000068: ncbiprotein

position:471112:-1
position: 471112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:473945:-1
position: 473945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473867-473945:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:471890-472561:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:471112-471635:-1:exon

LOC104914411
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914411
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 472489..478531
location: region:472489-478531:1
so has part: feature:472489-478531:1:exon
subclass of: SO_0000010

104914411
type: Gene
SIO_000068: ncbigene

position:472489:1
position: 472489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:478531:1
position: 478531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:472489-478531:1:exon

LOC104914411
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914411
product: uncharacterized LOC104914411, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_019623116.2
SIO_010081: LOC104914411
subclass of: SO_0000673
so part of: LOC104914411
location: join(472489..472577,473056..473314,473610..473670,476957..477077,477202..477537,477822..478531)
location: region:472489-478531:1
so has part: feature:472489-472577:1:exon
so has part: feature:473056-473314:1:exon
so has part: feature:473610-473670:1:exon
so has part: feature:476957-477077:1:exon
so has part: feature:477202-477537:1:exon
so has part: feature:477822-478531:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:472489-472577:1:exon

position:472577:1
position: 472577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:473056-473314:1:exon

position:473056:1
position: 473056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:473314:1
position: 473314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:473610-473670:1:exon

position:473610:1
position: 473610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:473670:1
position: 473670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:476957-477077:1:exon

position:476957:1
position: 476957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:477077:1
position: 477077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:477202-477537:1:exon

position:477202:1
position: 477202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:477537:1
position: 477537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:477822-478531:1:exon

position:477822:1
position: 477822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC104914411
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914411
product: uncharacterized LOC104914411, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XM_010723883.3
SIO_010081: LOC104914411
subclass of: SO_0000673
so part of: LOC104914411
location: join(472848..473314,473610..473670,474420..474571,476957..477077,477202..477537,477822..478531)
location: region:472848-478531:1
so has part: feature:472848-473314:1:exon
so has part: feature:473610-473670:1:exon
so has part: feature:474420-474571:1:exon
so has part: feature:476957-477077:1:exon
so has part: feature:477202-477537:1:exon
so has part: feature:477822-478531:1:exon

position:472848:1
position: 472848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:472848-473314:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:473610-473670:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:474420-474571:1:exon

position:474420:1
position: 474420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:474571:1
position: 474571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:476957-477077:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:477202-477537:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:477822-478531:1:exon

LOC104914411
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9103
gene: LOC104914411
product: uncharacterized LOC104914411, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 45 samples with support for all annotated introns
transcript id: XR_004162046.1
SIO_010081: LOC104914411
so part of: LOC104914411
location: join(472848..473314,473610..473670,474420..474571,477202..477537,477822..478531)
location: region:472848-478531:1
so has part: feature:472848-473314:1:exon
so has part: feature:473610-473670:1:exon
so has part: feature:474420-474571:1:exon
so has part: feature:477202-477537:1:exon
so has part: feature:477822-478531:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:472848-473314:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:473610-473670:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:474420-474571:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:477202-477537:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:477822-478531:1:exon

LOC104914411
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914411
product: uncharacterized LOC104914411, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_010723880.3
SIO_010081: LOC104914411
subclass of: SO_0000673
so part of: LOC104914411
location: join(472848..473314,473610..473670,476957..477077,477202..477537,477822..478531)
location: region:472848-478531:1
so has part: feature:472848-473314:1:exon
so has part: feature:473610-473670:1:exon
so has part: feature:476957-477077:1:exon
so has part: feature:477202-477537:1:exon
so has part: feature:477822-478531:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:472848-473314:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:473610-473670:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:476957-477077:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:477202-477537:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:477822-478531:1:exon

LOC104914411
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914411
product: uncharacterized LOC104914411, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_031556927.1
SIO_010081: LOC104914411
subclass of: SO_0000673
so part of: LOC104914411
location: join(472848..473314,473610..473670,476957..477077,477202..477459,477822..478531)
location: region:472848-478531:1
so has part: feature:472848-473314:1:exon
so has part: feature:473610-473670:1:exon
so has part: feature:476957-477077:1:exon
so has part: feature:477202-477459:1:exon
so has part: feature:477822-478531:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:472848-473314:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:473610-473670:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:476957-477077:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:477202-477459:1:exon

position:477459:1
position: 477459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:477822-478531:1:exon

LOC104914411
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914411
product: uncharacterized LOC104914411, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_019623117.2
SIO_010081: LOC104914411
subclass of: SO_0000673
so part of: LOC104914411
location: join(472848..473314,474420..474571,476957..477077,477202..477537,477822..478531)
location: region:472848-478531:1
so has part: feature:472848-473314:1:exon
so has part: feature:474420-474571:1:exon
so has part: feature:476957-477077:1:exon
so has part: feature:477202-477537:1:exon
so has part: feature:477822-478531:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:472848-473314:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:474420-474571:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:476957-477077:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:477202-477537:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:477822-478531:1:exon

LOC104914411
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914411
product: uncharacterized LOC104914411, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_010723884.3
SIO_010081: LOC104914411
subclass of: SO_0000673
so part of: LOC104914411
location: join(472848..473314,476957..477077,477202..477537,477822..478531)
location: region:472848-478531:1
so has part: feature:472848-473314:1:exon
so has part: feature:476957-477077:1:exon
so has part: feature:477202-477537:1:exon
so has part: feature:477822-478531:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:472848-473314:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:476957-477077:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:477202-477537:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:477822-478531:1:exon

LOC104914411
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914411
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC104914411 isoform X1
translation: MFGTTSDTAAAQKQCVSGHHSPSEQGKKSTVPGSGEEKLRHLQGYCSQKSWLQHHRAQPHGLEVCRKGPPGMARAGAVLFSCVLLVMAGGLQCCHAIKILRGKRGKPLSFPALRPVAKDIVRITWTSETHSTHIAEAKPEVKEFAVDFLPDFQGRLRIHPQLLSLEITELRSTDAGQYSAGVDIASKPTSPRKFTYLVLVLDDSPGSADSDTGGPSRSTAGPGMSSEPYAGGGTTPGPGNGQLPDAGGSPGPCGAQGGYCILRGYLVAAVFGPLVILLVVVHVVTRH
SIO_010081: LOC104914411
subclass of: SO_0000673
so part of: LOC104914411
location: join(473229..473314,473610..473670,476957..477077,477202..477537,477822..478081)
location: region:473229-478081:1
so has part: feature:473229-473314:1:exon
so has part: feature:473610-473670:1:exon
so has part: feature:476957-477077:1:exon
so has part: feature:477202-477537:1:exon
so has part: feature:477822-478081:1:exon

XP_019478661.1
type: Protein
SIO_000068: ncbiprotein

position:473229:1
position: 473229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:478081:1
position: 478081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473229-473314:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:473610-473670:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:476957-477077:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:477202-477537:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:477822-478081:1:exon

LOC104914411
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914411
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC104914411 isoform X1
translation: MFGTTSDTAAAQKQCVSGHHSPSEQGKKSTVPGSGEEKLRHLQGYCSQKSWLQHHRAQPHGLEVCRKGPPGMARAGAVLFSCVLLVMAGGLQCCHAIKILRGKRGKPLSFPALRPVAKDIVRITWTSETHSTHIAEAKPEVKEFAVDFLPDFQGRLRIHPQLLSLEITELRSTDAGQYSAGVDIASKPTSPRKFTYLVLVLDDSPGSADSDTGGPSRSTAGPGMSSEPYAGGGTTPGPGNGQLPDAGGSPGPCGAQGGYCILRGYLVAAVFGPLVILLVVVHVVTRH
SIO_010081: LOC104914411
subclass of: SO_0000673
so part of: LOC104914411
location: join(473229..473314,473610..473670,476957..477077,477202..477537,477822..478081)
location: region:473229-478081:1
so has part: feature:473229-473314:1:exon
so has part: feature:473610-473670:1:exon
so has part: feature:476957-477077:1:exon
so has part: feature:477202-477537:1:exon
so has part: feature:477822-478081:1:exon

XP_010722182.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:473229-473314:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:473610-473670:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:476957-477077:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:477202-477537:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:477822-478081:1:exon

LOC104914411
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914411
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC104914411 isoform X2
translation: MFGTTSDTAAAQKQCVSGHHSPSEQGKKSTVPGSGEEKLRHLQGYCSQKSWLQHHRAQPHGLEVCRKGPPGMARAGAVLFSCVLLVMAGGLQCCHAIKILRGKRGKPLSFPALRPVAKDIVRITWTSETHSTHIAEAKPEVKEFAVDFLPDFQGRLRIHPQLLSLEITELRSTDADDSPGSADSDTGGPSRSTAGPGMSSEPYAGGGTTPGPGNGQLPDAGGSPGPCGAQGGYCILRGYLVAAVFGPLVILLVVVHVVTRH
SIO_010081: LOC104914411
subclass of: SO_0000673
so part of: LOC104914411
location: join(473229..473314,473610..473670,476957..477077,477202..477459,477822..478081)
location: region:473229-478081:1
so has part: feature:473229-473314:1:exon
so has part: feature:473610-473670:1:exon
so has part: feature:476957-477077:1:exon
so has part: feature:477202-477459:1:exon
so has part: feature:477822-478081:1:exon

XP_031412787.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:473229-473314:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:473610-473670:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:476957-477077:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:477202-477459:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:477822-478081:1:exon

LOC104914411
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914411
product: uncharacterized LOC104914411, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 67 samples with support for all annotated introns
transcript id: XM_010723882.3
SIO_010081: LOC104914411
subclass of: SO_0000673
so part of: LOC104914411
location: join(473512..473670,477202..477537,477822..478531)
location: region:473512-478531:1
so has part: feature:473512-473670:1:exon
so has part: feature:477202-477537:1:exon
so has part: feature:477822-478531:1:exon

position:473512:1
position: 473512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473512-473670:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:477202-477537:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:477822-478531:1:exon

LOC104914411
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914411
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC104914411 isoform X3
translation: MGALEVCAESGGVRGVSQHCPAALQHCPWEWRGETQASPRILQSEGLQCCHAIKILRGKRGKPLSFPALRPVAKDIVRITWTSETHSTHIAEAKPEVKEFAVDFLPDFQGRLRIHPQLLSLEITELRSTDAGQYSAGVDIASKPTSPRKFTYLVLVLDDSPGSADSDTGGPSRSTAGPGMSSEPYAGGGTTPGPGNGQLPDAGGSPGPCGAQGGYCILRGYLVAAVFGPLVILLVVVHVVTRH
SIO_010081: LOC104914411
subclass of: SO_0000673
so part of: LOC104914411
location: join(473535..473670,477202..477537,477822..478081)
location: region:473535-478081:1
so has part: feature:473535-473670:1:exon
so has part: feature:477202-477537:1:exon
so has part: feature:477822-478081:1:exon

XP_010722184.1
type: Protein
SIO_000068: ncbiprotein

position:473535:1
position: 473535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473535-473670:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:477202-477537:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:477822-478081:1:exon

LOC104914411
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914411
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC104914411 isoform X4
translation: MARAGAVLFSCVLLVMAGGLQCCHAIKILRGKRGKPLSFPALRPVAKDIVRITWTSETHSTHIAEAKPEVKEFAVDFLPDFQGRLRIHPQLLSLEITELRSTDAGQYSAGVDIASKPTSPRKFTYLVLVLDDSPGSADSDTGGPSRSTAGPGMSSEPYAGGGTTPGPGNGQLPDAGGSPGPCGAQGGYCILRGYLVAAVFGPLVILLVVVHVVTRH
SIO_010081: LOC104914411
subclass of: SO_0000673
so part of: LOC104914411
location: join(477023..477077,477202..477537,477822..478081)
location: region:477023-478081:1
so has part: feature:477023-477077:1:exon
so has part: feature:477202-477537:1:exon
so has part: feature:477822-478081:1:exon

XP_019478662.1
type: Protein
SIO_000068: ncbiprotein

position:477023:1
position: 477023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:477023-477077:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:477202-477537:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:477822-478081:1:exon

LOC104914411
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914411
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC104914411 isoform X4
translation: MARAGAVLFSCVLLVMAGGLQCCHAIKILRGKRGKPLSFPALRPVAKDIVRITWTSETHSTHIAEAKPEVKEFAVDFLPDFQGRLRIHPQLLSLEITELRSTDAGQYSAGVDIASKPTSPRKFTYLVLVLDDSPGSADSDTGGPSRSTAGPGMSSEPYAGGGTTPGPGNGQLPDAGGSPGPCGAQGGYCILRGYLVAAVFGPLVILLVVVHVVTRH
SIO_010081: LOC104914411
subclass of: SO_0000673
so part of: LOC104914411
location: join(477023..477077,477202..477537,477822..478081)
location: region:477023-478081:1
so has part: feature:477023-477077:1:exon
so has part: feature:477202-477537:1:exon
so has part: feature:477822-478081:1:exon

XP_010722185.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:477023-477077:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:477202-477537:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:477822-478081:1:exon

LOC104914411
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914411
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC104914411 isoform X4
translation: MARAGAVLFSCVLLVMAGGLQCCHAIKILRGKRGKPLSFPALRPVAKDIVRITWTSETHSTHIAEAKPEVKEFAVDFLPDFQGRLRIHPQLLSLEITELRSTDAGQYSAGVDIASKPTSPRKFTYLVLVLDDSPGSADSDTGGPSRSTAGPGMSSEPYAGGGTTPGPGNGQLPDAGGSPGPCGAQGGYCILRGYLVAAVFGPLVILLVVVHVVTRH
SIO_010081: LOC104914411
subclass of: SO_0000673
so part of: LOC104914411
location: join(477023..477077,477202..477537,477822..478081)
location: region:477023-478081:1
so has part: feature:477023-477077:1:exon
so has part: feature:477202-477537:1:exon
so has part: feature:477822-478081:1:exon

XP_010722186.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:477023-477077:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:477202-477537:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:477822-478081:1:exon

LOC104914410
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914410
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(480950..487519)
location: region:480950-487519:-1
so has part: feature:480950-487519:-1:exon
subclass of: SO_0000010

104914410
type: Gene
SIO_000068: ncbigene

position:480950:-1
position: 480950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:487519:-1
position: 487519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:480950-487519:-1:exon

LOC104914410
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914410
product: uncharacterized LOC104914410, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XM_010723879.3
SIO_010081: LOC104914410
subclass of: SO_0000673
so part of: LOC104914410
location: complement(join(480950..482365,482511..482594,482885..482923,483210..483311,483437..483643,484302..485877,486046..487519))
location: region:480950-487519:-1
so has part: feature:486046-487519:-1:exon
so has part: feature:484302-485877:-1:exon
so has part: feature:483437-483643:-1:exon
so has part: feature:483210-483311:-1:exon
so has part: feature:482885-482923:-1:exon
so has part: feature:482511-482594:-1:exon
so has part: feature:480950-482365:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:486046-487519:-1:exon

position:486046:-1
position: 486046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:484302-485877:-1:exon

position:484302:-1
position: 484302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:485877:-1
position: 485877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:483437-483643:-1:exon

position:483437:-1
position: 483437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:483643:-1
position: 483643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:483210-483311:-1:exon

position:483210:-1
position: 483210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:483311:-1
position: 483311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:482885-482923:-1:exon

position:482885:-1
position: 482885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:482923:-1
position: 482923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:482511-482594:-1:exon

position:482511:-1
position: 482511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:482594:-1
position: 482594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:480950-482365:-1:exon

position:482365:-1
position: 482365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104914410
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914410
product: uncharacterized LOC104914410, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
transcript id: XM_010723878.3
SIO_010081: LOC104914410
subclass of: SO_0000673
so part of: LOC104914410
location: complement(join(480951..482362,482511..482594,482751..482800,482885..482923,483210..483311,483437..483643,484302..485877,486046..487519))
location: region:480951-487519:-1
so has part: feature:486046-487519:-1:exon
so has part: feature:484302-485877:-1:exon
so has part: feature:483437-483643:-1:exon
so has part: feature:483210-483311:-1:exon
so has part: feature:482885-482923:-1:exon
so has part: feature:482751-482800:-1:exon
so has part: feature:482511-482594:-1:exon
so has part: feature:480951-482362:-1:exon

position:480951:-1
position: 480951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:486046-487519:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:484302-485877:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:483437-483643:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:483210-483311:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:482885-482923:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:482751-482800:-1:exon

position:482751:-1
position: 482751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:482800:-1
position: 482800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:482511-482594:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:480951-482362:-1:exon

position:482362:-1
position: 482362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104914410
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914410
product: uncharacterized LOC104914410, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 50 samples with support for all annotated introns
transcript id: XM_010723877.3
SIO_010081: LOC104914410
subclass of: SO_0000673
so part of: LOC104914410
location: complement(join(480952..482365,482511..482594,482751..482800,482885..482923,483210..483311,483437..483643,484302..485877,486046..487519))
location: region:480952-487519:-1
so has part: feature:486046-487519:-1:exon
so has part: feature:484302-485877:-1:exon
so has part: feature:483437-483643:-1:exon
so has part: feature:483210-483311:-1:exon
so has part: feature:482885-482923:-1:exon
so has part: feature:482751-482800:-1:exon
so has part: feature:482511-482594:-1:exon
so has part: feature:480952-482365:-1:exon

position:480952:-1
position: 480952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:486046-487519:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:484302-485877:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:483437-483643:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:483210-483311:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:482885-482923:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:482751-482800:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:482511-482594:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:480952-482365:-1:exon

LOC104914410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914410
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC104914410 isoform X2
translation: MPPGIILGHESPRDVADTFMFTGSRWQGKKGEGRHCGASRGGGVQERMEAKGAGRGGLCLAVLCVGVALALKGEDQGDNNITQHSDISEATGAPTTATWDVSGLTTGPVGSPSPSDTGNLTTITVPLQADAPGNQTRNESGFPIRYWSPIIFVVLALLVLFFTYRRTKGNGSQEPTTSISDFSDVADPENDTALTVPAAQKRSDNPLPQELSKTTPCQPAPSSEQLSQPTNPTAVGASLCSGVPVDD
SIO_010081: LOC104914410
subclass of: SO_0000673
so part of: LOC104914410
location: complement(join(482303..482362,482511..482594,482751..482800,482885..482923,483210..483311,483437..483643,484302..484503))
location: region:482303-484503:-1
so has part: feature:484302-484503:-1:exon
so has part: feature:483437-483643:-1:exon
so has part: feature:483210-483311:-1:exon
so has part: feature:482885-482923:-1:exon
so has part: feature:482751-482800:-1:exon
so has part: feature:482511-482594:-1:exon
so has part: feature:482303-482362:-1:exon

XP_010722180.1
type: Protein
SIO_000068: ncbiprotein

position:482303:-1
position: 482303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:484503:-1
position: 484503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:484302-484503:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:483437-483643:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:483210-483311:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:482885-482923:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:482751-482800:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:482511-482594:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:482303-482362:-1:exon

LOC104914410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914410
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC104914410 isoform X1
translation: MPPGIILGHESPRDVADTFMFTGSRWQGKKGEGRHCGASRGGGVQERMEAKGAGRGGLCLAVLCVGVALALKGEDQGDNNITQHSDISEATGAPTTATWDVSGLTTGPVGSPSPSDTGNLTTITVPLQADAPGNQTRNESGFPIRYWSPIIFVVLALLVLFFTYRRTKGNGSQEPTTSISDFSDVADPENDTALTVPAAQKRSDNPLPQELSKTTPCQPAPSSEQLSQQPTNPTAVGASLCSGVPVDD
SIO_010081: LOC104914410
subclass of: SO_0000673
so part of: LOC104914410
location: complement(join(482303..482365,482511..482594,482751..482800,482885..482923,483210..483311,483437..483643,484302..484503))
location: region:482303-484503:-1
so has part: feature:484302-484503:-1:exon
so has part: feature:483437-483643:-1:exon
so has part: feature:483210-483311:-1:exon
so has part: feature:482885-482923:-1:exon
so has part: feature:482751-482800:-1:exon
so has part: feature:482511-482594:-1:exon
so has part: feature:482303-482365:-1:exon

XP_010722179.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:484302-484503:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:483437-483643:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:483210-483311:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:482885-482923:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:482751-482800:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:482511-482594:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:482303-482365:-1:exon

LOC104914410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914410
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC104914410 isoform X3
translation: MPPGIILGHESPRDVADTFMFTGSRWQGKKGEGRHCGASRGGGVQERMEAKGAGRGGLCLAVLCVGVALALKGEDQGDNNITQHSDISEATGAPTTATWDVSGLTTGPVGSPSPSDTGNLTTITVPLQADAPGNQTRNESGFPIRYWSPIIFVVLALLVLFFTYRRTKGNGSQEPTTSISDFSEEIRQPSAPGAEQDYPLPASPLLRTAFPAAHESHRCRRFPLLWGSC
SIO_010081: LOC104914410
subclass of: SO_0000673
so part of: LOC104914410
location: complement(join(482310..482365,482511..482594,482885..482923,483210..483311,483437..483643,484302..484503))
location: region:482310-484503:-1
so has part: feature:484302-484503:-1:exon
so has part: feature:483437-483643:-1:exon
so has part: feature:483210-483311:-1:exon
so has part: feature:482885-482923:-1:exon
so has part: feature:482511-482594:-1:exon
so has part: feature:482310-482365:-1:exon

XP_010722181.1
type: Protein
SIO_000068: ncbiprotein

position:482310:-1
position: 482310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:484302-484503:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:483437-483643:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:483210-483311:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:482885-482923:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:482511-482594:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:482310-482365:-1:exon

LOC116217462
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC116217462
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(487586..488317)
location: region:487586-488317:-1
so has part: feature:487586-488317:-1:exon
subclass of: SO_0000011

116217462
type: Gene
SIO_000068: ncbigene

position:487586:-1
position: 487586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:488317:-1
position: 488317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:487586-488317:-1:exon

LOC116217462
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC116217462
product: uncharacterized LOC116217462
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 61 samples with support for all annotated introns
transcript id: XR_004162047.1
SIO_010081: LOC116217462
subclass of: SO_0000673
so part of: LOC116217462
location: complement(join(487586..487719,487832..487927,488042..488317))
location: region:487586-488317:-1
so has part: feature:488042-488317:-1:exon
so has part: feature:487832-487927:-1:exon
so has part: feature:487586-487719:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:488042-488317:-1:exon

position:488042:-1
position: 488042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:487832-487927:-1:exon

position:487832:-1
position: 487832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:487927:-1
position: 487927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:487586-487719:-1:exon

position:487719:-1
position: 487719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104914408
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914408
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(488357..495456)
location: region:488357-495456:-1
so has part: feature:488357-495456:-1:exon
subclass of: SO_0000010

104914408
type: Gene
SIO_000068: ncbigene

position:488357:-1
position: 488357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:495456:-1
position: 495456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:488357-495456:-1:exon

LOC104914408
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914408
product: signaling lymphocytic activation molecule-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 6 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 95% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_019623084.1
SIO_010081: LOC104914408
subclass of: SO_0000673
so part of: LOC104914408
location: complement(join(488357..488507,488635..488780,488858..492737,492817..492906,493236..493307,493844..493944,494786..495057,495239..495456))
location: region:488357-495456:-1
so has part: feature:495239-495456:-1:exon
so has part: feature:494786-495057:-1:exon
so has part: feature:493844-493944:-1:exon
so has part: feature:493236-493307:-1:exon
so has part: feature:492817-492906:-1:exon
so has part: feature:488858-492737:-1:exon
so has part: feature:488635-488780:-1:exon
so has part: feature:488357-488507:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:495239-495456:-1:exon

position:495239:-1
position: 495239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:494786-495057:-1:exon

position:494786:-1
position: 494786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:495057:-1
position: 495057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:493844-493944:-1:exon

position:493844:-1
position: 493844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:493944:-1
position: 493944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:493236-493307:-1:exon

position:493236:-1
position: 493236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:493307:-1
position: 493307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:492817-492906:-1:exon

position:492817:-1
position: 492817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:492906:-1
position: 492906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:488858-492737:-1:exon

position:488858:-1
position: 488858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:492737:-1
position: 492737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:488635-488780:-1:exon

position:488635:-1
position: 488635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:488780:-1
position: 488780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:488357-488507:-1:exon

position:488507:-1
position: 488507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104914408
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914408
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 6 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: signaling lymphocytic activation molecule-like
translation: METVLGTLGKATILRIPPYFQNLTQHCGTXILFHPSGSSLEILSTQQHDQQLYEYSVTMEAGEKNWQIRLAVYEPVSDPXDWLLANDSCTVILNCTAAQGDNVSYSWASSEASTSPLCTHNGSLLLLSYDPTNSSLPCTCTASNPVSRCTTTLHSSTCRSEERGDWRTGMLLLGVVLPIMVLIVLAGAFAVAYVAANMRQPREQLLLAEDSTVHQXSQVQRVEKPKSPCSPPGTDHPTCTTIYTTSLAPYSSQSPNTEPMTVYANVMLPIS
SIO_010081: LOC104914408
subclass of: SO_0000673
so part of: LOC104914408
location: complement(join(492681..492737,492817..492906,493236..493307,493844..493944,494786..495057,495239..495456))
location: region:492681-495456:-1
so has part: feature:495239-495456:-1:exon
so has part: feature:494786-495057:-1:exon
so has part: feature:493844-493944:-1:exon
so has part: feature:493236-493307:-1:exon
so has part: feature:492817-492906:-1:exon
so has part: feature:492681-492737:-1:exon

XP_019478629.1
type: Protein
SIO_000068: ncbiprotein

position:492681:-1
position: 492681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:495239-495456:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:494786-495057:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:493844-493944:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:493236-493307:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:492817-492906:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:492681-492737:-1:exon

LOC109371034
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC109371034
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(499358..501690)
location: region:499358-501690:-1
so has part: feature:499358-501690:-1:exon
subclass of: SO_0000010

109371034
type: Gene
SIO_000068: ncbigene

position:499358:-1
position: 499358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:501690:-1
position: 501690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:499358-501690:-1:exon

LOC109371034
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC109371034
product: CD48 antigen-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 168 samples with support for all annotated introns
transcript id: XM_019623118.2
SIO_010081: LOC109371034
subclass of: SO_0000673
so part of: LOC109371034
location: complement(join(499358..500227,500437..500694,500766..501074,501491..501690))
location: region:499358-501690:-1
so has part: feature:501491-501690:-1:exon
so has part: feature:500766-501074:-1:exon
so has part: feature:500437-500694:-1:exon
so has part: feature:499358-500227:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:501491-501690:-1:exon

position:501491:-1
position: 501491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:500766-501074:-1:exon

position:500766:-1
position: 500766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:501074:-1
position: 501074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:500437-500694:-1:exon

position:500437:-1
position: 500437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:500694:-1
position: 500694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:499358-500227:-1:exon

position:500227:-1
position: 500227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109371034
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC109371034
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: CD48 antigen-like
translation: MFHEYVSATGDLRLAAFGVPLGGLPEMLSVDFGHQXGMKVAVVLTGQLLVFFVKAWAQQDQTHVEGLSGGVAYLIPRKQGFFHKVEWRFGKDLKIAIHENGEKVRYPNGPYKDRLKLFPNNTLRMDHLRKNDSNTYWVYMEDSAGTEHPESIRLHVYDAVPKPTINFVVNESNLESCEVIVNCSVELEDVTYEWLPPKKIASNGGSELFLSFSPLMEVYTCVAKNPVSSNSSKLIHRHPCSWEAESSAVTTSTKTSVQVSLGCLLLLLFSLP
SIO_010081: LOC109371034
subclass of: SO_0000673
so part of: LOC109371034
location: complement(join(500139..500227,500437..500694,500766..501074,501491..501652))
location: region:500139-501652:-1
so has part: feature:501491-501652:-1:exon
so has part: feature:500766-501074:-1:exon
so has part: feature:500437-500694:-1:exon
so has part: feature:500139-500227:-1:exon

XP_019478663.1
type: Protein
SIO_000068: ncbiprotein

position:500139:-1
position: 500139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:501652:-1
position: 501652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:501491-501652:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:500766-501074:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:500437-500694:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:500139-500227:-1:exon

LOC109371036
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC109371036
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 501972..503004
location: region:501972-503004:1
so has part: feature:501972-503004:1:exon
subclass of: SO_0000011

109371036
type: Gene
SIO_000068: ncbigene

position:501972:1
position: 501972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:503004:1
position: 503004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:501972-503004:1:exon

LOC109371036
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC109371036
product: uncharacterized LOC109371036
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 64 samples with support for all annotated introns
transcript id: XR_002121694.2
SIO_010081: LOC109371036
subclass of: SO_0000673
so part of: LOC109371036
location: join(501972..502718,502878..503004)
location: region:501972-503004:1
so has part: feature:501972-502718:1:exon
so has part: feature:502878-503004:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:501972-502718:1:exon

position:502718:1
position: 502718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:502878-503004:1:exon

position:502878:1
position: 502878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC104914407
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914407
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(502946..505833)
location: region:502946-505833:-1
so has part: feature:502946-505833:-1:exon
subclass of: SO_0000010

104914407
type: Gene
SIO_000068: ncbigene

position:502946:-1
position: 502946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:505833:-1
position: 505833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:502946-505833:-1:exon

LOC104914407
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914407
product: natural killer cell receptor 2B4-like, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 142 samples with support for all annotated introns
transcript id: XM_010723874.3
SIO_010081: LOC104914407
subclass of: SO_0000673
so part of: LOC104914407
location: complement(join(502946..503338,503541..503600,503784..503849,503963..504028,504150..504238,504552..504671,504994..505251,505315..505833))
location: region:502946-505833:-1
so has part: feature:505315-505833:-1:exon
so has part: feature:504994-505251:-1:exon
so has part: feature:504552-504671:-1:exon
so has part: feature:504150-504238:-1:exon
so has part: feature:503963-504028:-1:exon
so has part: feature:503784-503849:-1:exon
so has part: feature:503541-503600:-1:exon
so has part: feature:502946-503338:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:505315-505833:-1:exon

position:505315:-1
position: 505315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:504994-505251:-1:exon

position:504994:-1
position: 504994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:505251:-1
position: 505251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:504552-504671:-1:exon

position:504552:-1
position: 504552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:504671:-1
position: 504671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:504150-504238:-1:exon

position:504150:-1
position: 504150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:504238:-1
position: 504238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:503963-504028:-1:exon

position:503963:-1
position: 503963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:504028:-1
position: 504028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:503784-503849:-1:exon

position:503784:-1
position: 503784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:503849:-1
position: 503849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:503541-503600:-1:exon

position:503541:-1
position: 503541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:503600:-1
position: 503600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:502946-503338:-1:exon

position:503338:-1
position: 503338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104914407
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914407
product: natural killer cell receptor 2B4-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 51 samples with support for all annotated introns
transcript id: XM_010723875.3
SIO_010081: LOC104914407
subclass of: SO_0000673
so part of: LOC104914407
location: complement(join(502946..503338,503541..503600,503963..504028,504150..504238,504552..504671,504964..505251,505315..505833))
location: region:502946-505833:-1
so has part: feature:505315-505833:-1:exon
so has part: feature:504964-505251:-1:exon
so has part: feature:504552-504671:-1:exon
so has part: feature:504150-504238:-1:exon
so has part: feature:503963-504028:-1:exon
so has part: feature:503541-503600:-1:exon
so has part: feature:502946-503338:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:505315-505833:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:504964-505251:-1:exon

position:504964:-1
position: 504964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:504552-504671:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:504150-504238:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:503963-504028:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:503541-503600:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:502946-503338:-1:exon

LOC104914407
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914407
product: natural killer cell receptor 2B4-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 71 samples with support for all annotated introns
transcript id: XM_010723872.3
SIO_010081: LOC104914407
subclass of: SO_0000673
so part of: LOC104914407
location: complement(join(502946..503338,503541..503600,503784..503849,503963..504028,504150..504238,504552..504671,504964..505251,505315..505833))
location: region:502946-505833:-1
so has part: feature:505315-505833:-1:exon
so has part: feature:504964-505251:-1:exon
so has part: feature:504552-504671:-1:exon
so has part: feature:504150-504238:-1:exon
so has part: feature:503963-504028:-1:exon
so has part: feature:503784-503849:-1:exon
so has part: feature:503541-503600:-1:exon
so has part: feature:502946-503338:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:505315-505833:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:504964-505251:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:504552-504671:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:504150-504238:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:503963-504028:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:503784-503849:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:503541-503600:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:502946-503338:-1:exon

LOC104914407
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914407
product: natural killer cell receptor 2B4-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_010723873.3
SIO_010081: LOC104914407
subclass of: SO_0000673
so part of: LOC104914407
location: complement(join(502946..503338,503441..503600,503784..503849,503963..504028,504150..504238,504552..504671,504964..505251,505315..505833))
location: region:502946-505833:-1
so has part: feature:505315-505833:-1:exon
so has part: feature:504964-505251:-1:exon
so has part: feature:504552-504671:-1:exon
so has part: feature:504150-504238:-1:exon
so has part: feature:503963-504028:-1:exon
so has part: feature:503784-503849:-1:exon
so has part: feature:503441-503600:-1:exon
so has part: feature:502946-503338:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:505315-505833:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:504964-505251:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:504552-504671:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:504150-504238:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:503963-504028:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:503784-503849:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:503441-503600:-1:exon

position:503441:-1
position: 503441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:502946-503338:-1:exon

LOC104914407
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914407
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: natural killer cell receptor 2B4-like isoform X4
translation: MGACRTHPSSICTKKCCPERMEQQHVGCSTGVPIPDCPSAWGHCAHLMPSTEAEGCRDRAVLSGTDLQLLLEEPLPLEWTAVEWKVVLGAEPRQRILTVRKDEVEPANSSLSRRATFLWEPLSLHISAVTKADSGNYSAEIEHSHGSVLNKCFHVSVWEPVGSPHLERHVLQQEQEWCSFQLSCAVPGATAVSYSWSRDSEPLGNQSVLEVPKDVQPGLYVCNVSNPASWSTASIDMAAACTQTGLFGAVPWWAVIVMLVLAVCIAGSTTYWCWRRRRRKDRPAAPTSPAPPEHTEQSLTVYEEVGKLQTGQEPNGNSEAHVVGNTVYAVVNPKGQRPRSPQKPESCTIYSTVQHRMRSPSFKRKKLDRALVSTAYMEVTAPLRRYPSSQNSSTSPTDHHNS
SIO_010081: LOC104914407
subclass of: SO_0000673
so part of: LOC104914407
location: complement(join(503264..503338,503541..503600,503784..503849,503963..504028,504150..504238,504552..504671,504994..505251,505315..505789))
location: region:503264-505789:-1
so has part: feature:505315-505789:-1:exon
so has part: feature:504994-505251:-1:exon
so has part: feature:504552-504671:-1:exon
so has part: feature:504150-504238:-1:exon
so has part: feature:503963-504028:-1:exon
so has part: feature:503784-503849:-1:exon
so has part: feature:503541-503600:-1:exon
so has part: feature:503264-503338:-1:exon

XP_010722176.1
type: Protein
SIO_000068: ncbiprotein

position:503264:-1
position: 503264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:505789:-1
position: 505789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:505315-505789:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:504994-505251:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:504552-504671:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:504150-504238:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:503963-504028:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:503784-503849:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:503541-503600:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:503264-503338:-1:exon

LOC104914407
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914407
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: natural killer cell receptor 2B4-like isoform X3
translation: MGACRTHPSSICTKKCCPERMEQQHVGCSTGVPIPDCPSAWGHCAHLMPSTEAEGCRDRAVLSGTDLQLLLEEPLPLEWTAVEWKVVLGAEPRQRILTVRKDEVEPANSSLSRRATFLWEPLSLHISAVTKADSGNYSAEIEHSHGSVLNKCFHVSVWEPVGSPHLERHVLQQEQEWCSFQLSCAVPGATAVSYSWSRDSEPLGNQSVLEVPKDVQPGLYVCNVSNPASWSTASIDMAAACTQTGDLSSAPSNPGLFGAVPWWAVIVMLVLAVCIAGSTTYWCWRRRRRKDRPAAPTSPAPPEHTEQSLTVYEEVGKLQTGQEPNGNSEAHVVGNTVYAVVNPKGQSPSFKRKKLDRALVSTAYMEVTAPLRRYPSSQNSSTSPTDHHNS
SIO_010081: LOC104914407
subclass of: SO_0000673
so part of: LOC104914407
location: complement(join(503264..503338,503541..503600,503963..504028,504150..504238,504552..504671,504964..505251,505315..505789))
location: region:503264-505789:-1
so has part: feature:505315-505789:-1:exon
so has part: feature:504964-505251:-1:exon
so has part: feature:504552-504671:-1:exon
so has part: feature:504150-504238:-1:exon
so has part: feature:503963-504028:-1:exon
so has part: feature:503541-503600:-1:exon
so has part: feature:503264-503338:-1:exon

XP_010722177.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:505315-505789:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:504964-505251:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:504552-504671:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:504150-504238:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:503963-504028:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:503541-503600:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:503264-503338:-1:exon

LOC104914407
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914407
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: natural killer cell receptor 2B4-like isoform X1
translation: MGACRTHPSSICTKKCCPERMEQQHVGCSTGVPIPDCPSAWGHCAHLMPSTEAEGCRDRAVLSGTDLQLLLEEPLPLEWTAVEWKVVLGAEPRQRILTVRKDEVEPANSSLSRRATFLWEPLSLHISAVTKADSGNYSAEIEHSHGSVLNKCFHVSVWEPVGSPHLERHVLQQEQEWCSFQLSCAVPGATAVSYSWSRDSEPLGNQSVLEVPKDVQPGLYVCNVSNPASWSTASIDMAAACTQTGDLSSAPSNPGLFGAVPWWAVIVMLVLAVCIAGSTTYWCWRRRRRKDRPAAPTSPAPPEHTEQSLTVYEEVGKLQTGQEPNGNSEAHVVGNTVYAVVNPKGQRPRSPQKPESCTIYSTVQHRMRSPSFKRKKLDRALVSTAYMEVTAPLRRYPSSQNSSTSPTDHHNS
SIO_010081: LOC104914407
subclass of: SO_0000673
so part of: LOC104914407
location: complement(join(503264..503338,503541..503600,503784..503849,503963..504028,504150..504238,504552..504671,504964..505251,505315..505789))
location: region:503264-505789:-1
so has part: feature:505315-505789:-1:exon
so has part: feature:504964-505251:-1:exon
so has part: feature:504552-504671:-1:exon
so has part: feature:504150-504238:-1:exon
so has part: feature:503963-504028:-1:exon
so has part: feature:503784-503849:-1:exon
so has part: feature:503541-503600:-1:exon
so has part: feature:503264-503338:-1:exon

XP_010722174.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:505315-505789:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:504964-505251:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:504552-504671:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:504150-504238:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:503963-504028:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:503784-503849:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:503541-503600:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:503264-503338:-1:exon

LOC104914407
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914407
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: natural killer cell receptor 2B4-like isoform X2
translation: MGACRTHPSSICTKKCCPERMEQQHVGCSTGVPIPDCPSAWGHCAHLMPSTEAEGCRDRAVLSGTDLQLLLEEPLPLEWTAVEWKVVLGAEPRQRILTVRKDEVEPANSSLSRRATFLWEPLSLHISAVTKADSGNYSAEIEHSHGSVLNKCFHVSVWEPVGSPHLERHVLQQEQEWCSFQLSCAVPGATAVSYSWSRDSEPLGNQSVLEVPKDVQPGLYVCNVSNPASWSTASIDMAAACTQTGDLSSAPSNPGLFGAVPWWAVIVMLVLAVCIAGSTTYWCWRRRRRKDRPAAPTSPAPPEHTEQSLTVYEEVGKLQTGQEPNGNSEAHVVGNTVYAVVNPKGQRPRSPQKPESCTIYSTVQHRMRSPSFKRKKLDRALVSTAYMEVTGTGQQTDEPCTPPLQVPRS
SIO_010081: LOC104914407
subclass of: SO_0000673
so part of: LOC104914407
location: complement(join(503475..503600,503784..503849,503963..504028,504150..504238,504552..504671,504964..505251,505315..505789))
location: region:503475-505789:-1
so has part: feature:505315-505789:-1:exon
so has part: feature:504964-505251:-1:exon
so has part: feature:504552-504671:-1:exon
so has part: feature:504150-504238:-1:exon
so has part: feature:503963-504028:-1:exon
so has part: feature:503784-503849:-1:exon
so has part: feature:503475-503600:-1:exon

XP_010722175.1
type: Protein
SIO_000068: ncbiprotein

position:503475:-1
position: 503475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:505315-505789:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:504964-505251:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:504552-504671:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:504150-504238:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:503963-504028:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:503784-503849:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:503475-503600:-1:exon

VANGL2
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: VANGL2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 507134..513084
location: region:507134-513084:1
so has part: feature:507134-513084:1:exon
subclass of: SO_0000010

100543280
type: Gene
SIO_000068: ncbigene

position:507134:1
position: 507134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:513084:1
position: 513084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:507134-513084:1:exon

VANGL2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: VANGL2
product: VANGL planar cell polarity protein 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 12 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 152 samples with support for all annotated introns
transcript id: XM_010723887.3
SIO_010081: VANGL2
subclass of: SO_0000673
so part of: VANGL2
location: join(507134..507204,507294..507414,509168..509775,510137..510273,510544..510679,510982..511213,511474..513084)
location: region:507134-513084:1
so has part: feature:507134-507204:1:exon
so has part: feature:507294-507414:1:exon
so has part: feature:509168-509775:1:exon
so has part: feature:510137-510273:1:exon
so has part: feature:510544-510679:1:exon
so has part: feature:510982-511213:1:exon
so has part: feature:511474-513084:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:507134-507204:1:exon

position:507204:1
position: 507204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:507294-507414:1:exon

position:507294:1
position: 507294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:507414:1
position: 507414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:509168-509775:1:exon

position:509168:1
position: 509168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:509775:1
position: 509775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:510137-510273:1:exon

position:510137:1
position: 510137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:510273:1
position: 510273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:510544-510679:1:exon

position:510544:1
position: 510544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:510679:1
position: 510679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:510982-511213:1:exon

position:510982:1
position: 510982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:511213:1
position: 511213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:511474-513084:1:exon

position:511474:1
position: 511474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

VANGL2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: VANGL2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: vang-like protein 2 isoform X1
translation: MDNESQYSGYSYKSGHSRSSRKHRDRRDRHRSKSRDGSRGDKSVTIQAPGEPLLDNESTRGDERDDNWGETTTVVTGTSEHSISHDDITRITKDMEDSAHLDCSRHLGVALAGALALLAFLTPLAFMLLPQLLWREELEPCGTPCEGLFISVAFKLLILLLGSWALFFRRPKAFFPRVFVFRALLMVLVFLLVVSYWLFYGVRILDSRDRNYQGIVQYAVSLVDALLFVHYLAVVLLELRQLQPQFTLKAVRSTDGASRFYNVGHLSIQRAAIWILENYYHDFPVYNPALLNLPKSVLSKKMSGFKVYSLGEENTTNNSTGQSRAVIAAAARRRDNSHNEYYYEEAEHERRVRKRRARLVVAVEEAFTHIKRLQDEDQKNPREIMDPREAAQAIFASMARAMQKYLRTTKQQPYHTMESILQHLEFCITHDMTPKAFLERYLSAGPTIQYHKDRWLAKQWTLVSEEPVTNGLKDGVVFVLKRHDFSLVISAKKIPFFKLSEEFVDPKSHKFVMRLQSETSV
SIO_010081: VANGL2
subclass of: SO_0000673
so part of: VANGL2
location: join(507134..507204,507294..507414,509168..509775,510137..510273,510544..510679,510982..511213,511474..511734)
location: region:507134-511734:1
so has part: feature:507134-507204:1:exon
so has part: feature:507294-507414:1:exon
so has part: feature:509168-509775:1:exon
so has part: feature:510137-510273:1:exon
so has part: feature:510544-510679:1:exon
so has part: feature:510982-511213:1:exon
so has part: feature:511474-511734:1:exon

XP_010722189.1
type: Protein
SIO_000068: ncbiprotein

position:511734:1
position: 511734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:507134-507204:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:507294-507414:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:509168-509775:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:510137-510273:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:510544-510679:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:510982-511213:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:511474-511734:1:exon

VANGL2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: VANGL2
product: VANGL planar cell polarity protein 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
transcript id: XM_010723889.3
SIO_010081: VANGL2
subclass of: SO_0000673
so part of: VANGL2
location: join(508691..509083,509168..509775,510137..510273,510544..510679,510982..511213,511474..511734)
location: region:508691-511734:1
so has part: feature:508691-509083:1:exon
so has part: feature:509168-509775:1:exon
so has part: feature:510137-510273:1:exon
so has part: feature:510544-510679:1:exon
so has part: feature:510982-511213:1:exon
so has part: feature:511474-511734:1:exon

position:508691:1
position: 508691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:508691-509083:1:exon

position:509083:1
position: 509083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:509168-509775:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:510137-510273:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:510544-510679:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:510982-511213:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:511474-511734:1:exon

VANGL2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: VANGL2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: vang-like protein 2 isoform X2
translation: MGVMAPASTPGLEDDNWGETTTVVTGTSEHSISHDDITRITKDMEDSAHLDCSRHLGVALAGALALLAFLTPLAFMLLPQLLWREELEPCGTPCEGLFISVAFKLLILLLGSWALFFRRPKAFFPRVFVFRALLMVLVFLLVVSYWLFYGVRILDSRDRNYQGIVQYAVSLVDALLFVHYLAVVLLELRQLQPQFTLKAVRSTDGASRFYNVGHLSIQRAAIWILENYYHDFPVYNPALLNLPKSVLSKKMSGFKVYSLGEENTTNNSTGQSRAVIAAAARRRDNSHNEYYYEEAEHERRVRKRRARLVVAVEEAFTHIKRLQDEDQKNPREIMDPREAAQAIFASMARAMQKYLRTTKQQPYHTMESILQHLEFCITHDMTPKAFLERYLSAGPTIQYHKDRWLAKQWTLVSEEPVTNGLKDGVVFVLKRHDFSLVISAKKIPFFKLSEEFVDPKSHKFVMRLQSETSV
SIO_010081: VANGL2
subclass of: SO_0000673
so part of: VANGL2
location: join(509045..509083,509168..509775,510137..510273,510544..510679,510982..511213,511474..511734)
location: region:509045-511734:1
so has part: feature:509045-509083:1:exon
so has part: feature:509168-509775:1:exon
so has part: feature:510137-510273:1:exon
so has part: feature:510544-510679:1:exon
so has part: feature:510982-511213:1:exon
so has part: feature:511474-511734:1:exon

XP_010722191.1
type: Protein
SIO_000068: ncbiprotein

position:509045:1
position: 509045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:509045-509083:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:509168-509775:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:510137-510273:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:510544-510679:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:510982-511213:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:511474-511734:1:exon

S100A11
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: S100A11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 518942..520736
location: region:518942-520736:1
so has part: feature:518942-520736:1:exon
subclass of: SO_0000010

100549703
type: Gene
SIO_000068: ncbigene

position:518942:1
position: 518942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:520736:1
position: 520736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:518942-520736:1:exon

S100A11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: S100A11
product: S100 calcium binding protein A11
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 222 samples with support for all annotated introns
transcript id: XM_010723890.2
SIO_010081: S100A11
subclass of: SO_0000673
so part of: S100A11
location: join(518942..519089,520077..520226,520464..520736)
location: region:518942-520736:1
so has part: feature:518942-519089:1:exon
so has part: feature:520077-520226:1:exon
so has part: feature:520464-520736:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:518942-519089:1:exon

position:519089:1
position: 519089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:520077-520226:1:exon

position:520077:1
position: 520077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:520226:1
position: 520226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:520464-520736:1:exon

position:520464:1
position: 520464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

S100A11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: S100A11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein S100-A11
translation: MSKISPTETERCIESLLAVFQRYAGREGDNLKLSKKEFLAFMNTELASFTKNQKDPAVVDRMMKRLDINSDGQLDFQEFLNLIGGIAVACHDALLVQPPRP
SIO_010081: S100A11
subclass of: SO_0000673
so part of: S100A11
location: join(519087..519089,520077..520226,520464..520616)
location: region:519087-520616:1
so has part: feature:519087-519089:1:exon
so has part: feature:520077-520226:1:exon
so has part: feature:520464-520616:1:exon

XP_010722192.1
type: Protein
SIO_000068: ncbiprotein

position:519087:1
position: 519087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:520616:1
position: 520616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:519087-519089:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:520077-520226:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:520464-520616:1:exon

COPA
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: COPA
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(521173..539538)
location: region:521173-539538:-1
so has part: feature:521173-539538:-1:exon
subclass of: SO_0000010

100549394
type: Gene
SIO_000068: ncbigene

position:521173:-1
position: 521173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:539538:-1
position: 539538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:521173-539538:-1:exon

COPA
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: COPA
product: COPI coat complex subunit alpha
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 221 samples with support for all annotated introns
transcript id: XM_003213951.4
SIO_010081: COPA
subclass of: SO_0000673
so part of: COPA
location: complement(join(521173..521829,522140..522334,522433..522594,522835..522945,523029..523215,523627..523763,523978..524046,524234..524311,524515..524624,524706..524795,525073..525196,525416..525504,525692..525787,525905..526094,526363..526509,526621..526783,527138..527276,527663..527748,528228..528367,528932..529014,530676..530751,530860..530926,531351..531501,532043..532125,532532..532667,533176..533275,533779..533888,537558..537667,537974..538050,538351..538431,538716..538789,539204..539317,539409..539538))
location: region:521173-539538:-1
so has part: feature:539409-539538:-1:exon
so has part: feature:539204-539317:-1:exon
so has part: feature:538716-538789:-1:exon
so has part: feature:538351-538431:-1:exon
so has part: feature:537974-538050:-1:exon
so has part: feature:537558-537667:-1:exon
so has part: feature:533779-533888:-1:exon
so has part: feature:533176-533275:-1:exon
so has part: feature:532532-532667:-1:exon
so has part: feature:532043-532125:-1:exon
so has part: feature:531351-531501:-1:exon
so has part: feature:530860-530926:-1:exon
so has part: feature:530676-530751:-1:exon
so has part: feature:528932-529014:-1:exon
so has part: feature:528228-528367:-1:exon
so has part: feature:527663-527748:-1:exon
so has part: feature:527138-527276:-1:exon
so has part: feature:526621-526783:-1:exon
so has part: feature:526363-526509:-1:exon
so has part: feature:525905-526094:-1:exon
so has part: feature:525692-525787:-1:exon
so has part: feature:525416-525504:-1:exon
so has part: feature:525073-525196:-1:exon
so has part: feature:524706-524795:-1:exon
so has part: feature:524515-524624:-1:exon
so has part: feature:524234-524311:-1:exon
so has part: feature:523978-524046:-1:exon
so has part: feature:523627-523763:-1:exon
so has part: feature:523029-523215:-1:exon
so has part: feature:522835-522945:-1:exon
so has part: feature:522433-522594:-1:exon
so has part: feature:522140-522334:-1:exon
so has part: feature:521173-521829:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:539409-539538:-1:exon

position:539409:-1
position: 539409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:539204-539317:-1:exon

position:539204:-1
position: 539204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:539317:-1
position: 539317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:538716-538789:-1:exon

position:538716:-1
position: 538716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:538789:-1
position: 538789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:538351-538431:-1:exon

position:538351:-1
position: 538351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:538431:-1
position: 538431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:537974-538050:-1:exon

position:537974:-1
position: 537974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:538050:-1
position: 538050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:537558-537667:-1:exon

position:537558:-1
position: 537558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:537667:-1
position: 537667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:533779-533888:-1:exon

position:533779:-1
position: 533779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:533888:-1
position: 533888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:533176-533275:-1:exon

position:533176:-1
position: 533176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:533275:-1
position: 533275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:532532-532667:-1:exon

position:532532:-1
position: 532532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:532667:-1
position: 532667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:532043-532125:-1:exon

position:532043:-1
position: 532043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:532125:-1
position: 532125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:531351-531501:-1:exon

position:531351:-1
position: 531351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:531501:-1
position: 531501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:530860-530926:-1:exon

position:530860:-1
position: 530860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:530926:-1
position: 530926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:530676-530751:-1:exon

position:530676:-1
position: 530676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:530751:-1
position: 530751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:528932-529014:-1:exon

position:528932:-1
position: 528932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:529014:-1
position: 529014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:528228-528367:-1:exon

position:528228:-1
position: 528228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:528367:-1
position: 528367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:527663-527748:-1:exon

position:527663:-1
position: 527663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:527748:-1
position: 527748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:527138-527276:-1:exon

position:527138:-1
position: 527138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:527276:-1
position: 527276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:526621-526783:-1:exon

position:526621:-1
position: 526621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:526783:-1
position: 526783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:526363-526509:-1:exon

position:526363:-1
position: 526363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:526509:-1
position: 526509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:525905-526094:-1:exon

position:525905:-1
position: 525905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:526094:-1
position: 526094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:525692-525787:-1:exon

position:525692:-1
position: 525692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:525787:-1
position: 525787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:525416-525504:-1:exon

position:525416:-1
position: 525416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:525504:-1
position: 525504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:525073-525196:-1:exon

position:525073:-1
position: 525073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:525196:-1
position: 525196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:524706-524795:-1:exon

position:524706:-1
position: 524706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:524795:-1
position: 524795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:524515-524624:-1:exon

position:524515:-1
position: 524515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:524624:-1
position: 524624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:524234-524311:-1:exon

position:524234:-1
position: 524234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:524311:-1
position: 524311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:523978-524046:-1:exon

position:523978:-1
position: 523978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:524046:-1
position: 524046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:523627-523763:-1:exon

position:523627:-1
position: 523627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:523763:-1
position: 523763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:523029-523215:-1:exon

position:523029:-1
position: 523029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:523215:-1
position: 523215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:522835-522945:-1:exon

position:522835:-1
position: 522835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:522945:-1
position: 522945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:522433-522594:-1:exon

position:522433:-1
position: 522433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:522594:-1
position: 522594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:522140-522334:-1:exon

position:522140:-1
position: 522140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:522334:-1
position: 522334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:521173-521829:-1:exon

position:521829:-1
position: 521829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

COPA
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: COPA
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coatomer subunit alpha
translation: MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESDVRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAWEVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVWVARNRFAVLDRMHSILIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDADSITLFDVQQKRTLASVKISKVKYVIWSADMSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGVFIYTTSNHIKYAVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFKLALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEIALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDRLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDVAERVRILKNCGQKSLAYLTAATHGLDEEAENLKETFDPEKETIPDIDPSAKLLQPPAPVMPLDTNWPLLTVSKGFFEGTIASKGKGGALAADIDIDNVGTEGWGEDAELQLDEDGFVDAGEGFGEEGLGKGQEEGGGWEVEEDLDLPPELDVPAGPAGGAEDGFFVPPTKGTSPAQVWCNNSQLPVDHILAGSFETAMRLLHDQVGVTNFGPYKQLFLQTYARGRTTYQALPCLPTMYGYPHRNWKEAGLKNALPAVGLKLNDLIQRLQLCYQLTTAGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLIAICREYIVGLSMEIERKKLPKETLEHQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQQTRKILSACEKNPTDTYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYCPEFQGQICRVTTVTEIGKDVIGLRISPLQFR
SIO_010081: COPA
subclass of: SO_0000673
so part of: COPA
location: complement(join(521770..521829,522140..522334,522433..522594,522835..522945,523029..523215,523627..523763,523978..524046,524234..524311,524515..524624,524706..524795,525073..525196,525416..525504,525692..525787,525905..526094,526363..526509,526621..526783,527138..527276,527663..527748,528228..528367,528932..529014,530676..530751,530860..530926,531351..531501,532043..532125,532532..532667,533176..533275,533779..533888,537558..537667,537974..538050,538351..538431,538716..538789,539204..539317,539409..539448))
location: region:521770-539448:-1
so has part: feature:539409-539448:-1:exon
so has part: feature:539204-539317:-1:exon
so has part: feature:538716-538789:-1:exon
so has part: feature:538351-538431:-1:exon
so has part: feature:537974-538050:-1:exon
so has part: feature:537558-537667:-1:exon
so has part: feature:533779-533888:-1:exon
so has part: feature:533176-533275:-1:exon
so has part: feature:532532-532667:-1:exon
so has part: feature:532043-532125:-1:exon
so has part: feature:531351-531501:-1:exon
so has part: feature:530860-530926:-1:exon
so has part: feature:530676-530751:-1:exon
so has part: feature:528932-529014:-1:exon
so has part: feature:528228-528367:-1:exon
so has part: feature:527663-527748:-1:exon
so has part: feature:527138-527276:-1:exon
so has part: feature:526621-526783:-1:exon
so has part: feature:526363-526509:-1:exon
so has part: feature:525905-526094:-1:exon
so has part: feature:525692-525787:-1:exon
so has part: feature:525416-525504:-1:exon
so has part: feature:525073-525196:-1:exon
so has part: feature:524706-524795:-1:exon
so has part: feature:524515-524624:-1:exon
so has part: feature:524234-524311:-1:exon
so has part: feature:523978-524046:-1:exon
so has part: feature:523627-523763:-1:exon
so has part: feature:523029-523215:-1:exon
so has part: feature:522835-522945:-1:exon
so has part: feature:522433-522594:-1:exon
so has part: feature:522140-522334:-1:exon
so has part: feature:521770-521829:-1:exon

XP_003213999.1
type: Protein
SIO_000068: ncbiprotein

position:521770:-1
position: 521770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:539448:-1
position: 539448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:539409-539448:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:539204-539317:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:538716-538789:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:538351-538431:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:537974-538050:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:537558-537667:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:533779-533888:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:533176-533275:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:532532-532667:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:532043-532125:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:531351-531501:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:530860-530926:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:530676-530751:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:528932-529014:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:528228-528367:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:527663-527748:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:527138-527276:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:526621-526783:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:526363-526509:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:525905-526094:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:525692-525787:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:525416-525504:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:525073-525196:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:524706-524795:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:524515-524624:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:524234-524311:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:523978-524046:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:523627-523763:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:523029-523215:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:522835-522945:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:522433-522594:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:522140-522334:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:521770-521829:-1:exon

NCSTN
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: NCSTN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 539580..550667
location: region:539580-550667:1
so has part: feature:539580-550667:1:exon
subclass of: SO_0000010

100549548
type: Gene
SIO_000068: ncbigene

position:539580:1
position: 539580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:550667:1
position: 550667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:539580-550667:1:exon

NCSTN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: NCSTN
product: nicastrin
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 219 samples with support for all annotated introns
transcript id: XM_003213952.4
SIO_010081: NCSTN
subclass of: SO_0000673
so part of: NCSTN
location: join(539580..539739,540358..540462,541917..542040,542548..542666,543699..543844,544024..544174,544296..544405,544703..544855,546239..546343,546533..546610,546760..546929,548155..548257,548532..548627,549068..549155,549284..549438,549716..549928,550068..550667)
location: region:539580-550667:1
so has part: feature:539580-539739:1:exon
so has part: feature:540358-540462:1:exon
so has part: feature:541917-542040:1:exon
so has part: feature:542548-542666:1:exon
so has part: feature:543699-543844:1:exon
so has part: feature:544024-544174:1:exon
so has part: feature:544296-544405:1:exon
so has part: feature:544703-544855:1:exon
so has part: feature:546239-546343:1:exon
so has part: feature:546533-546610:1:exon
so has part: feature:546760-546929:1:exon
so has part: feature:548155-548257:1:exon
so has part: feature:548532-548627:1:exon
so has part: feature:549068-549155:1:exon
so has part: feature:549284-549438:1:exon
so has part: feature:549716-549928:1:exon
so has part: feature:550068-550667:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:539580-539739:1:exon

position:539739:1
position: 539739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:540358-540462:1:exon

position:540358:1
position: 540358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:540462:1
position: 540462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:541917-542040:1:exon

position:541917:1
position: 541917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:542040:1
position: 542040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:542548-542666:1:exon

position:542548:1
position: 542548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:542666:1
position: 542666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:543699-543844:1:exon

position:543699:1
position: 543699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:543844:1
position: 543844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:544024-544174:1:exon

position:544024:1
position: 544024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:544174:1
position: 544174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:544296-544405:1:exon

position:544296:1
position: 544296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:544405:1
position: 544405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:544703-544855:1:exon

position:544703:1
position: 544703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:544855:1
position: 544855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:546239-546343:1:exon

position:546239:1
position: 546239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:546343:1
position: 546343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:546533-546610:1:exon

position:546533:1
position: 546533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:546610:1
position: 546610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:546760-546929:1:exon

position:546760:1
position: 546760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:546929:1
position: 546929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:548155-548257:1:exon

position:548155:1
position: 548155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:548257:1
position: 548257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:548532-548627:1:exon

position:548532:1
position: 548532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:548627:1
position: 548627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:549068-549155:1:exon

position:549068:1
position: 549068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:549155:1
position: 549155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:549284-549438:1:exon

position:549284:1
position: 549284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:549438:1
position: 549438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:549716-549928:1:exon

position:549716:1
position: 549716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:549928:1
position: 549928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:550068-550667:1:exon

position:550068:1
position: 550068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NCSTN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: NCSTN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nicastrin
translation: MAAMGRAGSRRGVTAVVGSCWVSLHAWCGPLPALLFAVLVAGSCEGNSVERKIYIPLNKTAPCVRLLNATHQIGCQSSISGDTGVIHVVEKEEDLNWVLADGPHPPYMILLDGSLFNRKVMQQLKGTSRVSGLAVSIAKPNPPQGFSPGLKCPNDGFGVYSKDYGPQYAHCNRTVWNPVGSGLSYEDFDFPIFLLEDANETQVIKQCYQDHNVPTDGSGPEYPLCAMQLFSHMHAVTSTVTCMRRNSIQNTFSINPETVCDPLLDYNVWSTLHPINSSEKVDPKKEFIMVATRIDSHSFFWNIAPGAESAVSSFVTHLAAAEALHKASDVHLLQRNIMFTFFQGETFDYIGSSRMVYDMEKDKFPLRLENIHSFVELNQVALRNDSILWMHTDPVSRLNATVEPQIKNLLDVLSNSSVGANVTLQEVGFSQSLPPSSFQRFLRARHIPGVVLTDHQASFQNRYYQSMYDTPENIQMQYPEGLSPEEALEYVTDTAKSLAEVATVVARALYRLAGGANDTSAIQADPKTITQMLYGFLIKMNNSWFQSIIKPDLKGILGDDVPQHYVAVSSPVNTTYLVQYVLANLTGTVVNLTKEECLNPEKAPNTEKEMYDYAWVQGSLDPNSTSRVPYCVRSTVRLSKALSPAFELREWGSTEYSTWTESRWKEIRARIFLVASKELEIITLVVGIAILVFSLVATHFINAKADVLFSIPRDPGAVAY
SIO_010081: NCSTN
subclass of: SO_0000673
so part of: NCSTN
location: join(539616..539739,540358..540462,541917..542040,542548..542666,543699..543844,544024..544174,544296..544405,544703..544855,546239..546343,546533..546610,546760..546929,548155..548257,548532..548627,549068..549155,549284..549438,549716..549928,550068..550190)
location: region:539616-550190:1
so has part: feature:539616-539739:1:exon
so has part: feature:540358-540462:1:exon
so has part: feature:541917-542040:1:exon
so has part: feature:542548-542666:1:exon
so has part: feature:543699-543844:1:exon
so has part: feature:544024-544174:1:exon
so has part: feature:544296-544405:1:exon
so has part: feature:544703-544855:1:exon
so has part: feature:546239-546343:1:exon
so has part: feature:546533-546610:1:exon
so has part: feature:546760-546929:1:exon
so has part: feature:548155-548257:1:exon
so has part: feature:548532-548627:1:exon
so has part: feature:549068-549155:1:exon
so has part: feature:549284-549438:1:exon
so has part: feature:549716-549928:1:exon
so has part: feature:550068-550190:1:exon

XP_003214000.2
type: Protein
SIO_000068: ncbiprotein

position:539616:1
position: 539616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:550190:1
position: 550190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:539616-539739:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:540358-540462:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:541917-542040:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:542548-542666:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:543699-543844:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:544024-544174:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:544296-544405:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:544703-544855:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:546239-546343:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:546533-546610:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:546760-546929:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:548155-548257:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:548532-548627:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:549068-549155:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:549284-549438:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:549716-549928:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:550068-550190:1:exon

NHLH1
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: NHLH1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 558388..564106
location: region:558388-564106:1
so has part: feature:558388-564106:1:exon
subclass of: SO_0000010

100539230
type: Gene
SIO_000068: ncbigene

position:558388:1
position: 558388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:564106:1
position: 564106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:558388-564106:1:exon

NHLH1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: NHLH1
product: nescient helix-loop-helix 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_010723892.3
SIO_010081: NHLH1
subclass of: SO_0000673
so part of: NHLH1
location: join(558388..559753,562018..564106)
location: region:558388-564106:1
so has part: feature:558388-559753:1:exon
so has part: feature:562018-564106:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:558388-559753:1:exon

position:559753:1
position: 559753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:562018-564106:1:exon

position:562018:1
position: 562018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NHLH1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: NHLH1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: helix-loop-helix protein 1
translation: MLNSEQTELDLPPAHSEPESVFSDCGRVGSAEESGVALCPQPRGAEQAEAVKKDLQHLSREERRRRRRATAKYRTAHATRERIRVEAFNMAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLDV
SIO_010081: NHLH1
subclass of: SO_0000673
so part of: NHLH1
location: 562227..562619
location: region:562227-562619:1
so has part: feature:562227-562619:1:exon

XP_010722194.1
type: Protein
SIO_000068: ncbiprotein

position:562227:1
position: 562227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:562619:1
position: 562619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:562227-562619:1:exon

LOC104914413
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914413
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 571653..575437
location: region:571653-575437:1
so has part: feature:571653-575437:1:exon
subclass of: SO_0000010

104914413
type: Gene
SIO_000068: ncbigene

position:571653:1
position: 571653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:575437:1
position: 575437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:571653-575437:1:exon

LOC104914413
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914413
product: keratinocyte proline-rich protein-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_010723894.2
SIO_010081: LOC104914413
subclass of: SO_0000673
so part of: LOC104914413
location: join(571653..571735,573466..575437)
location: region:571653-575437:1
so has part: feature:571653-571735:1:exon
so has part: feature:573466-575437:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:571653-571735:1:exon

position:571735:1
position: 571735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:573466-575437:1:exon

position:573466:1
position: 573466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC104914413
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914413
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratinocyte proline-rich protein-like
translation: MSLNQTQCKQEIILPPGLSKTISKENQEPEPSVEPVPCPQQHQSEAQVTEVTAVVVAQYPEETEPLPAPSVEPGKGEAPAVVIPECPPQEQQQQQQSKLPATLPPVSQPEPVACSQEKSECKELPEPVLAVCPEAVPQQKQECKEIPVQDPVTSPEPAKCPQEKQEHEEVPVPVPVQNPEPVPCPQEKQECKEVPVPEPVQEPEPTPCPQEKQECKEIPVVVPVQNPEPAPCPQEKQECKEVPVPTPCPAEKQECKEIPVVVPVQNTDPVPCPQEKQECKEVPVPIPAPGPEPEQSSLPEKHPPLEQQQVKQPSPWPLTQK
SIO_010081: LOC104914413
subclass of: SO_0000673
so part of: LOC104914413
location: 573487..574452
location: region:573487-574452:1
so has part: feature:573487-574452:1:exon

XP_010722196.1
type: Protein
SIO_000068: ncbiprotein

position:573487:1
position: 573487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:574452:1
position: 574452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:573487-574452:1:exon

LOC109371030
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC109371030
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(580756..581587)
location: region:580756-581587:-1
so has part: feature:580756-581587:-1:exon
subclass of: SO_0000010

109371030
type: Gene
SIO_000068: ncbigene

position:580756:-1
position: 580756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:581587:-1
position: 581587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:580756-581587:-1:exon

LOC109371030
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC109371030
product: proline-rich protein 9-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031556929.1
SIO_010081: LOC109371030
subclass of: SO_0000673
so part of: LOC109371030
location: complement(580756..581587)
location: region:580756-581587:-1
so has part: feature:580756-581587:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:580756-581587:-1:exon

LOC109371030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC109371030
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proline-rich protein 9-like
translation: MSYYEQCKQPCLPPPICLQKCSQRVEPCSNICVKPCPTQCVEVCQNPCASESTTCCSTQCVEPCSTQCSTQCVTQCVEPCSTQCVTQCVEPCSTQCSTQCVTQCVEPCSTQCTTQCVDVCPPTCIDACIKPCATQCSTQCPVPCVEQCSTQCSTKCVEPCPAPCVEVCTKKCVDTCETVCLEPCGTVCTRPC
SIO_010081: LOC109371030
subclass of: SO_0000673
so part of: LOC109371030
location: complement(581009..581587)
location: region:581009-581587:-1
so has part: feature:581009-581587:-1:exon

XP_031412789.1
type: Protein
SIO_000068: ncbiprotein

position:581009:-1
position: 581009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:581009-581587:-1:exon

LOC104914420
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914420
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(586454..591463)
location: region:586454-591463:-1
so has part: feature:586454-591463:-1:exon
subclass of: SO_0000010

104914420
type: Gene
SIO_000068: ncbigene

position:586454:-1
position: 586454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:591463:-1
position: 591463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:586454-591463:-1:exon

LOC104914420
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914420
product: keratin-associated protein 10-4-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031556928.1
SIO_010081: LOC104914420
subclass of: SO_0000673
so part of: LOC104914420
location: complement(586454..591463)
location: region:586454-591463:-1
so has part: feature:586454-591463:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:586454-591463:-1:exon

LOC104914420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914420
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-associated protein 10-4-like
translation: MLFQTDCQRRQPCLPPHVVLVRNLPVRRSVDPCSPVCSVSRLNTCAEPCYYARVPQGTTTYLKLGSCDVRQIALDPCCLGITTHVDPCCQDGTQCTTTCVDPCCQDVTKCTTRCVDPCCQDGTQCTTTCVDSCCQDVTKCTTRCVDPCCQDGTQCTTRCVDPCCQDVTKCTTRCVDPCCQDVTKCTTRCVDPCCQDVTKCTTRCVDPCCKEVTKCTTTRCVDPCCKEVTRCTTRCAAPCCEEVTKCTTKCVDPCCRPGTRCATACVDPCYGRVTKCTTRCVDPCCGAVTRCSTKCVEPCCEEVSKCTSRCVDPCSGVVTRCTTKCVDPCCGRVTKCARCKNPCCEEVSKCTTRCVDPCCGRVTKCVDPCCREVTGCKNRCVDPSCKEVTRCTPICVETCCTEVTKCATTCVDPCCQDATKCTTTCVDPCCKEVTKCTTTCVDPCCQDVTQCTTRCEDLCCQDATQYTTTCVDPCCQDANQCTSACVVPCVPPCFARPTPLCASICGRHYSISCADICCRK
SIO_010081: LOC104914420
subclass of: SO_0000673
so part of: LOC104914420
location: complement(586826..588388)
location: region:586826-588388:-1
so has part: feature:586826-588388:-1:exon

XP_031412788.1
type: Protein
SIO_000068: ncbiprotein

position:586826:-1
position: 586826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:588388:-1
position: 588388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:586826-588388:-1:exon

LOC100539174
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC100539174
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 600330..602135
location: region:600330-602135:1
so has part: feature:600330-602135:1:exon
subclass of: SO_0000010

100539174
type: Gene
SIO_000068: ncbigene

position:600330:1
position: 600330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:602135:1
position: 602135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:600330-602135:1:exon

LOC100539174
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC100539174
product: cornulin-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_010723895.3
SIO_010081: LOC100539174
subclass of: SO_0000673
so part of: LOC100539174
location: join(600330..600425,600625..600784,600894..602135)
location: region:600330-602135:1
so has part: feature:600330-600425:1:exon
so has part: feature:600625-600784:1:exon
so has part: feature:600894-602135:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:600330-600425:1:exon

position:600425:1
position: 600425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:600625-600784:1:exon

position:600625:1
position: 600625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:600784:1
position: 600784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:600894-602135:1:exon

position:600894:1
position: 600894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100539174
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC100539174
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cornulin-like
translation: MAQLQENINGIITTFYTYASSDGDCSTLSRGELRQLIEQEFEDVIMDARDPRTVEKVLLFLDEDSSGKVDFSEFLNLVFRVAKACHGQLQQYLEPEDDQELTVQEEADGEQHHKQVLEEGVSEQVREGGTSQQDQDTQQHQKGEEPKKHQDTQQNQEDGTPKNQDTQKTEKSETPKIQDTQKTQEVETPKSNQGTQQKQKSEMPKNVHQDDRAKAREEGPKRGENVVTETSEKDRNTQKIEKIPKHDPKPHQDKVTETPKLGQNHHQRQELEPAEQSHISPTKTPERTTDKTKDHAAPWQDPSPKGTQELPPPVRGTSPHPDPQASGIQHDTAHLPHPTVVVQEGSGVEAERVPGQQQHGPHGKGKHAAEQEHLQPQWPPRK
SIO_010081: LOC100539174
subclass of: SO_0000673
so part of: LOC100539174
location: join(600647..600784,600894..601904)
location: region:600647-601904:1
so has part: feature:600647-600784:1:exon
so has part: feature:600894-601904:1:exon

XP_010722197.1
type: Protein
SIO_000068: ncbiprotein

position:600647:1
position: 600647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:601904:1
position: 601904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:600647-600784:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:600894-601904:1:exon

TCHH
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: TCHH
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 605588..613897
location: region:605588-613897:1
so has part: feature:605588-613897:1:exon
subclass of: SO_0000010

104914421
type: Gene
SIO_000068: ncbigene

position:605588:1
position: 605588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:613897:1
position: 613897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:605588-613897:1:exon

TCHH
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: TCHH
product: trichohyalin
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031556909.1
SIO_010081: TCHH
subclass of: SO_0000673
so part of: TCHH
location: join(605588..606966,607430..613897)
location: region:605588-613897:1
so has part: feature:605588-606966:1:exon
so has part: feature:607430-613897:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:605588-606966:1:exon

position:606966:1
position: 606966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:607430-613897:1:exon

position:607430:1
position: 607430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TCHH
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: TCHH
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: trichohyalin
translation: MSHFLDSVSTIITVFHQHAKEDGDQSKFNRRKMKEFIQKEFADAIVNPHDPQTIDKILQFLEWDGDGEIDFNEFLLLVFRVAKACYWYLQKGQRLLQRTKLITSSKTVQEPEIKNRGSRQQFQEEESRTLERNRHPPCIPEPRDTRVQDLETHEETGSHCQQRNTQSRADARQSTRPREMIPQEYEEQNQEPCDQRSSRRRQQPELDRLGDLQNHKRGSLKTAHRDERQNQEKPHREQLADVRSCSHSCEPQLLPDRRSGRQPRESTLPVYDQRNHRPQDQEAVAHGRSSRRPHEPEEADRGRRNQIQKPELLKDERSRNHLRELEQKELERSSRQLCKSEYLDSERLHQSYLQEPLVIEHRYNNTKELEEDYYEQGKTQKGRRPRESMTYERTREDIVAEAEADIEIQHVIRNRERKEEARRPHGSVRSEWTQEDTVAEAEADVIRHVTQERGREETRRPCESVRDVKTREDIVAEDEADVEIRRVSQEREREGEARRPRESQRYERTREDIVAEAEAEADVEIRRVTQERDREQARRPRERARYMKTQEDIVAEAEADVEIHRVTQERGREEARRPHEIPRYVKTQEDIVAEAEADVEIRRVTQERDREQATRPRETTRYVKTREDIVAEAEADVEIRRVTQERDRQEARRPRERVRYVKTQEDIEAEAEADVEIHRVSREWERKEEARTPRESVRSDRTQEDVVAEAEADVEIRYVTQERDREEARRPRGKARYVKTREDIVAEAEADVEIRRISREQERKQEARRPRETQRYVKTREDIVAEAEADAEIRHVTQERDREEARRPRETARYVKTQEDIVAEAEADVEIRRVSRERERQEEARRPRESQRYVKTQEDIVAEAEADVEIRRVTQERDREEARRPRESARFQRTQEDIVAEADADVEIRRVSQEPKREEEARRPRELVRSERIQEDIVADIEADVEIRRVTQKREREEARRPRESVRCERTREDIVAEAEADVEIRRVSQERDREGEARRPRESARFQRTQEDIVAEAEADVEIRRVTQGRERQEEAGRPHESQRYGKAREDIVAEAEADVEIRRVTQERDREARRPRETARYVKTREDIVAEAEADVEIRRVSRERERQQEARRPRESQRYVKTREDIVAEAEADAEIRRVTQEKEREGEARRPRESARFQRTQEDIVAEAEADVEIRRVTQERDRQEARRPRESARFQRTQEDIVAEAEADVEIRRVTQKRERQEEARRPRESQRSEQTREDIVAEADADVEIHRVSQERDREEARRPRESARYVKTQEDIVAEAEADVEIRRVSRERERQQEARRPRESQRYVKTREDIVAEAEADVEIRRVTQERDREDVRRPRETARYVKTQEDIVAEAEADVEIRRVTQERDRQEARRPRERARYVKTREDIVAEAEADVEIRRVTQKRERQEEARRPRESVRSEQTREDIVAEAEADVEIRHVSQERDREEARRPRETARYVKTREDIVAEAEADVEIRRVSRERERQQEARRPRESQRYVRTREDIVAEAEADVEIRRVTQKRERQEEARRPRESVRSEQTREDIVAEAEADVEIRRVSQERKREEEARRPRELVRSERIREDIVADIEADVEIRRVTQKREREEARRPRETARYVKTREDIVAEAEADVEIRRVSQERDRQEARRPRESQRYERTREYTVAEAEADVQIRRVTQERDRQEAQRPHETARYMKTQEDIVAEAEADVEIRRVTQKREREEARRPRESVRSEQTREDIVAEGEADVEIHHVSQEQEREGEARRPCESARFQRTQEDIVVEAEADVEIRHISRELLHEEEATRPRKLVTYARTQEETVAAAEAEICREKEQQRDSLRKHEEPVEERRTVQVQVREDAIVNERSLDRQRDLEVEQNRFPVHNDQGRRQDRSLYQTVDIDSRDLVPHGEVPSVTDVRVRYIPSVPDVRPEVQTVPEPCEPQTIAYLIHVIQNLNDPKATTYEIICQQSNGSEQPVYVRKCYVSPQPPDGPCKDSSVV…
SIO_010081: TCHH
subclass of: SO_0000673
so part of: TCHH
location: join(606829..606966,607430..613897)
location: region:606829-613897:1
so has part: feature:606829-606966:1:exon
so has part: feature:607430-613897:1:exon

XP_031412769.1
type: Protein
SIO_000068: ncbiprotein

position:606829:1
position: 606829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:606829-606966:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:607430-613897:1:exon

LOC104914415
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914415
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(625815..627101)
location: region:625815-627101:-1
so has part: feature:625815-627101:-1:exon
subclass of: SO_0000010

104914415
type: Gene
SIO_000068: ncbigene

position:625815:-1
position: 625815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:627101:-1
position: 627101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:625815-627101:-1:exon

LOC104914415
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914415
product: uncharacterized LOC104914415
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_010723896.2
SIO_010081: LOC104914415
subclass of: SO_0000673
so part of: LOC104914415
location: complement(625815..627101)
location: region:625815-627101:-1
so has part: feature:625815-627101:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:625815-627101:-1:exon

LOC104914415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914415
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC104914415
translation: MHYYGERYKQLYLPGSSYVTESHQHCTSQPDACSTTCHPLSIIKSPMPRWQSYVQPFTYVCSQPSVTHSTLLPCQPCVQQCVILSPEPCETTHLLPCRKPSVRLSPAQALQSCENGHLEKKRVAKSLPPCAPRCPEPGKLKFPPCGIRYSSSCKDECRSRKVSRCLSQRYGTENRCLQGMTSGYSLPLRGVTECPPQQCVTQCFLEEYISPFPHQKCSKGYPTQECTTTCTSQQVLKCPPGSGAKVSSSQQRLAKCSLLQEGAKHKSSSTQHINKSKCLHPCAIQRSPRHHAGDVKRSSHSKKSRCASKWLW
SIO_010081: LOC104914415
subclass of: SO_0000673
so part of: LOC104914415
location: complement(626144..627082)
location: region:626144-627082:-1
so has part: feature:626144-627082:-1:exon

XP_010722198.1
type: Protein
SIO_000068: ncbiprotein

position:626144:-1
position: 626144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:627082:-1
position: 627082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:626144-627082:-1:exon

LOC104914422
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914422
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(630943..633805)
location: region:630943-633805:-1
so has part: feature:630943-633805:-1:exon
subclass of: SO_0000010

104914422
type: Gene
SIO_000068: ncbigene

position:630943:-1
position: 630943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:633805:-1
position: 633805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:630943-633805:-1:exon

LOC104914422
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914422
product: keratin-associated protein 10-7-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031556916.1
SIO_010081: LOC104914422
subclass of: SO_0000673
so part of: LOC104914422
location: complement(630943..633805)
location: region:630943-633805:-1
so has part: feature:630943-633805:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:630943-633805:-1:exon

LOC104914422
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914422
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-associated protein 10-7-like
translation: MHLQHPLGASLRALLSHLSFQPCPNLTKMLCYQQQCFPPLHQEHISIKCPQTHPLMHRWQSTLCTPQYVTPCTPRQRFLSSSFSPQQCVTQCIPRQQYATKCIQQQQRVTQHIPPARCVTTCVPQQSCATQCTSQEACVTKCMPQQQCATKFIPQQQCATKCIPQQQHSARCVTTCMPQQPFLTKGIHQQHSATMCIPQHCVTTYTPHQQCATRCVTTCVPRQCATKCISQRYVTACAPQQCATKCIPQQQCATRCVTTCVPQPCETKGASICVPQQHQCATKSVPQQHQCVPQCATKGVPQQHQCATKGIPQQHQCATKCVPQQCATKGIPQEQQCATKCIPQEQQCATKCIPQQHQCATKGIPQQHQCATKGIPQQHQCATKGSPQQHQCATKCVPQQCATKCVPQQHQCATKCVPHQCATKGVPQQQQCVTKCVPQQCATKGIPQQSVTQCVPQQPYQSGGVKISSHAKKYCSASKWPW
SIO_010081: LOC104914422
subclass of: SO_0000673
so part of: LOC104914422
location: complement(631732..633180)
location: region:631732-633180:-1
so has part: feature:631732-633180:-1:exon

XP_031412776.1
type: Protein
SIO_000068: ncbiprotein

position:631732:-1
position: 631732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:633180:-1
position: 633180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:631732-633180:-1:exon

LOC100550719
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC100550719
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(641639..643314)
location: region:641639-643314:-1
so has part: feature:641639-643314:-1:exon
subclass of: SO_0000010

100550719
type: Gene
SIO_000068: ncbigene

position:641639:-1
position: 641639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:643314:-1
position: 643314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:641639-643314:-1:exon

LOC100550719
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC100550719
product: feather keratin 4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XM_010723897.2
SIO_010081: LOC100550719
subclass of: SO_0000673
so part of: LOC100550719
location: complement(join(641639..642445,643227..643314))
location: region:641639-643314:-1
so has part: feature:643227-643314:-1:exon
so has part: feature:641639-642445:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:643227-643314:-1:exon

position:643227:-1
position: 643227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:641639-642445:-1:exon

position:642445:-1
position: 642445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100550719
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC100550719
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: feather keratin 4
translation: MSCYREMISSRCLPPCEVTCPQPYADACNQPCVTSCGDSRAVVYPPPVVITFPGPILSSCPQESIVGSSAPAGIGSSFGYGSSQGLVGSYGSRGLYKYGRSFSSYGYGGYGAGSCRPC
SIO_010081: LOC100550719
subclass of: SO_0000673
so part of: LOC100550719
location: complement(642068..642424)
location: region:642068-642424:-1
so has part: feature:642068-642424:-1:exon

XP_010722199.1
type: Protein
SIO_000068: ncbiprotein

position:642068:-1
position: 642068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:642424:-1
position: 642424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:642068-642424:-1:exon

LOC104914417
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914417
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(652574..653773)
location: region:652574-653773:-1
so has part: feature:652574-653773:-1:exon
subclass of: SO_0000010

104914417
type: Gene
SIO_000068: ncbigene

position:652574:-1
position: 652574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:653773:-1
position: 653773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:652574-653773:-1:exon

LOC104914417
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914417
product: feather keratin Cos1-1/Cos1-3/Cos2-1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_010723899.3
SIO_010081: LOC104914417
subclass of: SO_0000673
so part of: LOC104914417
location: complement(join(652574..653367,653642..653773))
location: region:652574-653773:-1
so has part: feature:653642-653773:-1:exon
so has part: feature:652574-653367:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:653642-653773:-1:exon

position:653642:-1
position: 653642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:652574-653367:-1:exon

position:653367:-1
position: 653367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104914417
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914417
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: feather keratin Cos1-1/Cos1-3/Cos2-1-like
translation: MAFYRQPCDYGRPLLPCEVTCPQPYADACSQPCITSCGDSRAIVYPPPVVITFPGPILSSCPQESIVGSSAPLELGSSFGHGSYLETQSLVGPAAAGRYSNSCYTHRAAFRPQKPCITLPPPPPTKTWQEQEQEQIRSL
SIO_010081: LOC104914417
subclass of: SO_0000673
so part of: LOC104914417
location: complement(652929..653348)
location: region:652929-653348:-1
so has part: feature:652929-653348:-1:exon

XP_010722201.1
type: Protein
SIO_000068: ncbiprotein

position:652929:-1
position: 652929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:653348:-1
position: 653348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:652929-653348:-1:exon

LOC109371038
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC109371038
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(656499..658903)
location: region:656499-658903:-1
so has part: feature:656499-658903:-1:exon
subclass of: SO_0000011

109371038
type: Gene
SIO_000068: ncbigene

position:656499:-1
position: 656499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:658903:-1
position: 658903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:656499-658903:-1:exon

LOC109371038
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC109371038
product: uncharacterized LOC109371038, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_002121697.1
SIO_010081: LOC109371038
subclass of: SO_0000673
so part of: LOC109371038
location: complement(join(656499..657780,658463..658494,658832..658903))
location: region:656499-658903:-1
so has part: feature:658832-658903:-1:exon
so has part: feature:658463-658494:-1:exon
so has part: feature:656499-657780:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:658832-658903:-1:exon

position:658832:-1
position: 658832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:658463-658494:-1:exon

position:658463:-1
position: 658463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:658494:-1
position: 658494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:656499-657780:-1:exon

position:657780:-1
position: 657780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109371038
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC109371038
product: uncharacterized LOC109371038, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_002121696.1
SIO_010081: LOC109371038
subclass of: SO_0000673
so part of: LOC109371038
location: complement(join(656499..657780,658463..658494,658734..658809))
location: region:656499-658809:-1
so has part: feature:658734-658809:-1:exon
so has part: feature:658463-658494:-1:exon
so has part: feature:656499-657780:-1:exon

position:658809:-1
position: 658809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:658734-658809:-1:exon

position:658734:-1
position: 658734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:658463-658494:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:656499-657780:-1:exon

LOC104914418
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914418
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(671093..671758)
location: region:671093-671758:-1
so has part: feature:671093-671758:-1:exon
subclass of: SO_0000010

104914418
type: Gene
SIO_000068: ncbigene

position:671093:-1
position: 671093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:671758:-1
position: 671758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:671093-671758:-1:exon

LOC104914418
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914418
product: beta-keratin-related protein-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031556917.1
SIO_010081: LOC104914418
subclass of: SO_0000673
so part of: LOC104914418
location: complement(671093..671758)
location: region:671093-671758:-1
so has part: feature:671093-671758:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:671093-671758:-1:exon

LOC104914418
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914418
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta-keratin-related protein-like
translation: MSSGGQMLSSRCSAPCEVACPQPYADVCSQPCVTSCGDSRAVVYPPPVVITFPGPTLTSFPQETIVGSSFPSPIGGFSGSLGPSESGGSFGSGGSYGGGSSYGGGIGGSYGGGSSYGGGRSFGSGGSFGGRRSISSRSCYGGGFGGGSSYGGGSFGGGRSFGIASCYGGSGSSGFRRSGGGSCGYF
SIO_010081: LOC104914418
subclass of: SO_0000673
so part of: LOC104914418
location: complement(671184..671744)
location: region:671184-671744:-1
so has part: feature:671184-671744:-1:exon

XP_031412777.1
type: Protein
SIO_000068: ncbiprotein

position:671184:-1
position: 671184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:671744:-1
position: 671744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:671184-671744:-1:exon

LOC104914419
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914419
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 674934..675592
location: region:674934-675592:1
so has part: feature:674934-675592:1:exon
subclass of: SO_0000010

104914419
type: Gene
SIO_000068: ncbigene

position:674934:1
position: 674934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:675592:1
position: 675592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:674934-675592:1:exon

LOC104914419
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914419
product: beta-keratin-related protein-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_010723901.2
SIO_010081: LOC104914419
subclass of: SO_0000673
so part of: LOC104914419
location: 674934..675592
location: region:674934-675592:1
so has part: feature:674934-675592:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:674934-675592:1:exon

LOC104914419
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914419
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta-keratin-related protein-like
translation: MSSGGQLMSSRCYAPCEVTCPQPYANVCSQPCVTSCGDSRAVIYPPPVLINFPGPILNSCPQESIVGNSFPSPIGGFSGPQGSSESGGSFGSGGSYGGGSSYGGGIGGSYGGGSSYGGGRSFGSGGSFGGRRSISSRSCYGGGFGGGSSYGGGSFGGGRSFGIASCYGGSGSSGFRRSGGGSCGYF
SIO_010081: LOC104914419
subclass of: SO_0000673
so part of: LOC104914419
location: 674941..675501
location: region:674941-675501:1
so has part: feature:674941-675501:1:exon

XP_010722203.1
type: Protein
SIO_000068: ncbiprotein

position:674941:1
position: 674941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:675501:1
position: 675501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:674941-675501:1:exon

LOC104909342
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104909342
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(685011..685851)
location: region:685011-685851:-1
so has part: feature:685011-685851:-1:exon
subclass of: SO_0000010

104909342
type: Gene
SIO_000068: ncbigene

position:685011:-1
position: 685011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:685851:-1
position: 685851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:685011-685851:-1:exon

LOC104909342
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104909342
product: scale keratin-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031556918.1
SIO_010081: LOC104909342
subclass of: SO_0000673
so part of: LOC104909342
location: complement(685011..685851)
location: region:685011-685851:-1
so has part: feature:685011-685851:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:685011-685851:-1:exon

LOC104909342
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104909342
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: scale keratin-like
translation: MSCYDLCSINTSGISCPQPIADSCNEPCVRQCPDSTTVIQPPPVVVTIPGPILSSFPQQAVVGSSGAPILGGFGGSSLGTGACMGYGGSSLSVWGLYGLGSYGGYGSSSLGYGGLYGGSSLGYXGLYGYGRSYGSGYCSPYRYNRYRRGSCGPC
SIO_010081: LOC104909342
subclass of: SO_0000673
so part of: LOC104909342
location: complement(685345..685808)
location: region:685345-685808:-1
so has part: feature:685345-685808:-1:exon

XP_031412778.1
type: Protein
SIO_000068: ncbiprotein

position:685345:-1
position: 685345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:685808:-1
position: 685808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:685345-685808:-1:exon

LOC100550565
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC100550565
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 689432..690239
location: region:689432-690239:1
so has part: feature:689432-690239:1:exon
subclass of: SO_0000010

100550565
type: Gene
SIO_000068: ncbigene

position:689432:1
position: 689432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:690239:1
position: 690239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:689432-690239:1:exon

LOC100550565
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC100550565
product: scale keratin
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_003212768.3
SIO_010081: LOC100550565
subclass of: SO_0000673
so part of: LOC100550565
location: 689432..690239
location: region:689432-690239:1
so has part: feature:689432-690239:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:689432-690239:1:exon

LOC100550565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC100550565
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: scale keratin
translation: MSCYDLCSINTSGISCPQPIADSCNEPCVRQCPDSTTVIQPPPVVVTIPGPILSSFPQQAVVGSSGAPILGGFGGSSLGTGGLYGYGGSSLSYGGLYGLGSYGGYGSSSLGYGGLYGGSSLGYGGLYGYGRSYGFGYCSPYSYRYSRYGRGSCRPC
SIO_010081: LOC100550565
subclass of: SO_0000673
so part of: LOC100550565
location: 689449..689919
location: region:689449-689919:1
so has part: feature:689449-689919:1:exon

XP_003212816.1
type: Protein
SIO_000068: ncbiprotein

position:689449:1
position: 689449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:689919:1
position: 689919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:689449-689919:1:exon

LOC100538652
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC100538652
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 694029..696231
location: region:694029-696231:1
so has part: feature:694029-696231:1:exon
subclass of: SO_0000010

100538652
type: Gene
SIO_000068: ncbigene

position:694029:1
position: 694029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:696231:1
position: 696231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:694029-696231:1:exon

LOC100538652
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC100538652
product: scale keratin
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XM_010723902.2
SIO_010081: LOC100538652
subclass of: SO_0000673
so part of: LOC100538652
location: join(694029..694317,695403..696231)
location: region:694029-696231:1
so has part: feature:694029-694317:1:exon
so has part: feature:695403-696231:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:694029-694317:1:exon

position:694317:1
position: 694317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:695403-696231:1:exon

position:695403:1
position: 695403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100538652
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC100538652
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: scale keratin
translation: MSCYDLCPTTSSIACPQPIANSCNDPCVRQCPDSTALIQPPPVVITFPGPILSSFPQQAVVGSSGAPAFGGSLGLGGLYGSRSSYGIGSSLGYGAQYGYGSSALSTLGSGFCSPFSSRRYSRILRGSCGPC
SIO_010081: LOC100538652
subclass of: SO_0000673
so part of: LOC100538652
location: 695423..695818
location: region:695423-695818:1
so has part: feature:695423-695818:1:exon

XP_010722204.1
type: Protein
SIO_000068: ncbiprotein

position:695423:1
position: 695423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:695818:1
position: 695818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:695423-695818:1:exon

LOC109371027
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC109371027
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(696625..697420)
location: region:696625-697420:-1
so has part: feature:696625-697420:-1:exon
subclass of: SO_0000010

109371027
type: Gene
SIO_000068: ncbigene

position:696625:-1
position: 696625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:697420:-1
position: 697420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:696625-697420:-1:exon

LOC109371027
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC109371027
product: scale keratin-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 65% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031556910.1
SIO_010081: LOC109371027
subclass of: SO_0000673
so part of: LOC109371027
location: complement(join(696625..696794,697041..697420))
location: region:696625-697420:-1
so has part: feature:697041-697420:-1:exon
so has part: feature:696625-696794:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:697041-697420:-1:exon

position:697041:-1
position: 697041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:696625-696794:-1:exon

position:696794:-1
position: 696794
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109371027
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC109371027
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: scale keratin-like
translation: MSCYDLCPTNIGGISRPQPIADSGNEPCIRQCPDSTAVIQPPAVVVTFPGPILSSFPQDSVVGSSGAPVLGGSSLGYGRSSLASLHFDPVYYQQLRALCLLLLILNNSYFFKGTAIIPFSLGQKGHKKESQLLGMSEQ
SIO_010081: LOC109371027
subclass of: SO_0000673
so part of: LOC109371027
location: complement(join(696625..696794,697041..697287))
location: region:696625-697287:-1
so has part: feature:697041-697287:-1:exon
so has part: feature:696625-696794:-1:exon

XP_031412770.1
type: Protein
SIO_000068: ncbiprotein

position:697287:-1
position: 697287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:697041-697287:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:696625-696794:-1:exon

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 9103
estimated length: unknown
gap type: between scaffolds
so part of: sequence
location: 701182..701281
location: region:701182-701281:1
so has part: feature:701182-701281:1:region

position:701182:1
position: 701182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:701281:1
position: 701281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:701182-701281:1:region

LOC100550524
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC100550524
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(701514..703197)
location: region:701514-703197:-1
so has part: feature:701514-703197:-1:exon
subclass of: SO_0000010

100550524
type: Gene
SIO_000068: ncbigene

position:701514:-1
position: 701514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:703197:-1
position: 703197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:701514-703197:-1:exon

LOC100550524
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC100550524
product: mucosal pentraxin-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 68 samples with support for all annotated introns
transcript id: XM_010723909.3
SIO_010081: LOC100550524
subclass of: SO_0000673
so part of: LOC100550524
location: complement(join(701514..702291,702502..702671,702740..702839,703016..703197))
location: region:701514-703197:-1
so has part: feature:703016-703197:-1:exon
so has part: feature:702740-702839:-1:exon
so has part: feature:702502-702671:-1:exon
so has part: feature:701514-702291:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:703016-703197:-1:exon

position:703016:-1
position: 703016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:702740-702839:-1:exon

position:702740:-1
position: 702740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:702839:-1
position: 702839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:702502-702671:-1:exon

position:702502:-1
position: 702502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:702671:-1
position: 702671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:701514-702291:-1:exon

position:702291:-1
position: 702291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100550524
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC100550524
product: mucosal pentraxin-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 133 samples with support for all annotated introns
transcript id: XM_010723910.3
SIO_010081: LOC100550524
subclass of: SO_0000673
so part of: LOC100550524
location: complement(join(701519..702291,702502..702671,702740..702839,703022..703194))
location: region:701519-703194:-1
so has part: feature:703022-703194:-1:exon
so has part: feature:702740-702839:-1:exon
so has part: feature:702502-702671:-1:exon
so has part: feature:701519-702291:-1:exon

position:701519:-1
position: 701519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:703194:-1
position: 703194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:703022-703194:-1:exon

position:703022:-1
position: 703022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:702740-702839:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:702502-702671:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:701519-702291:-1:exon

LOC100550524
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC100550524
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mucosal pentraxin-like isoform X2
translation: MSSLGKVEGGSQVAVSFFWEVPWIGASAHSDCGGDMETTRFYLLFFLVGLCSLAAPGGAAAKLSAQIQSTPQVPSMYHSLVLSCKVTGDTGPKEFVWEKKGIHKPLQRGPSDILLFRSLNATHLGIYTCKVTSPRGSAVATYNLWINDLKYKVFVFPEESNDSLVLVQARPEHPLLNFTVCLRSYTDLTRPYSLFSYATKEQDNEIVLLKFKPTEYRFYVGGKYVAFRVPESHMESEHVCVTWESPTGIVRFWLNKNPWPRKGLQKGYEVGNEAVVVLGQEQDAFGGGFDAQQSFVGEISDVYMWDVGLSNSEVKMLDYSEPYANPIFGWRNFPYKIEGEVYLVS
SIO_010081: LOC100550524
subclass of: SO_0000673
so part of: LOC100550524
location: complement(join(701696..702291,702502..702671,702740..702839,703022..703193))
location: region:701696-703193:-1
so has part: feature:703022-703193:-1:exon
so has part: feature:702740-702839:-1:exon
so has part: feature:702502-702671:-1:exon
so has part: feature:701696-702291:-1:exon

XP_010722212.1
type: Protein
SIO_000068: ncbiprotein

position:701696:-1
position: 701696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:703193:-1
position: 703193
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:703022-703193:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:702740-702839:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:702502-702671:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:701696-702291:-1:exon

LOC100550524
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC100550524
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mucosal pentraxin-like isoform X1
translation: MSSLGKVEGGSQVAVSFFWEVPWIGASAHSDCGGDMETTRFYLLFFLVGLCSLAAPGGRGAAAKLSAQIQSTPQVPSMYHSLVLSCKVTGDTGPKEFVWEKKGIHKPLQRGPSDILLFRSLNATHLGIYTCKVTSPRGSAVATYNLWINDLKYKVFVFPEESNDSLVLVQARPEHPLLNFTVCLRSYTDLTRPYSLFSYATKEQDNEIVLLKFKPTEYRFYVGGKYVAFRVPESHMESEHVCVTWESPTGIVRFWLNKNPWPRKGLQKGYEVGNEAVVVLGQEQDAFGGGFDAQQSFVGEISDVYMWDVGLSNSEVKMLDYSEPYANPIFGWRNFPYKIEGEVYLVS
SIO_010081: LOC100550524
subclass of: SO_0000673
so part of: LOC100550524
location: complement(join(701696..702291,702502..702671,702740..702839,703016..703193))
location: region:701696-703193:-1
so has part: feature:703016-703193:-1:exon
so has part: feature:702740-702839:-1:exon
so has part: feature:702502-702671:-1:exon
so has part: feature:701696-702291:-1:exon

XP_010722211.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:703016-703193:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:702740-702839:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:702502-702671:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:701696-702291:-1:exon

LOC104914423
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914423
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(703247..706511)
location: region:703247-706511:-1
so has part: feature:703247-706511:-1:exon
subclass of: SO_0000010

104914423
type: Gene
SIO_000068: ncbigene

position:703247:-1
position: 703247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:706511:-1
position: 706511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:703247-706511:-1:exon

LOC104914423
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914423
product: serum amyloid P-component
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 79 samples with support for all annotated introns
transcript id: XM_010723908.3
SIO_010081: LOC104914423
subclass of: SO_0000673
so part of: LOC104914423
location: complement(join(703247..704260,704822..706511))
location: region:703247-706511:-1
so has part: feature:704822-706511:-1:exon
so has part: feature:703247-704260:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:704822-706511:-1:exon

position:704822:-1
position: 704822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:703247-704260:-1:exon

position:704260:-1
position: 704260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104914423
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914423
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serum amyloid P-component
translation: MGTAPMWIVVLSAVTAAMVQEDLYRKVFVFREDPSDAYVLLQARPEHPMLNFTVCLRSYTDLTRPHSLFSYATKAQDNEILLFKPKPGEYRFYVGGKYVTFRVPENRGEWEHVCASWESGNGIAEFWLNGRPWPRKGLQKGYEVGNEAVVMLGQEQDAFGGGFDVYNSFTGEMADVHLWDAGLSPDKMRSAYLALRLPPALLAWGHLHYETKGDVVVKPRLREALGV
SIO_010081: LOC104914423
subclass of: SO_0000673
so part of: LOC104914423
location: complement(join(703641..704260,704822..704885))
location: region:703641-704885:-1
so has part: feature:704822-704885:-1:exon
so has part: feature:703641-704260:-1:exon

XP_010722210.1
type: Protein
SIO_000068: ncbiprotein

position:703641:-1
position: 703641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:704885:-1
position: 704885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:704822-704885:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:703641-704260:-1:exon

ACKR1
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: ACKR1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(705829..707739)
location: region:705829-707739:-1
so has part: feature:705829-707739:-1:exon
subclass of: SO_0000010

109371028
type: Gene
SIO_000068: ncbigene

position:705829:-1
position: 705829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:707739:-1
position: 707739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:705829-707739:-1:exon

ACKR1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: ACKR1
product: atypical chemokine receptor 1 (Duffy blood group)
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 91% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_019623089.2
SIO_010081: ACKR1
subclass of: SO_0000673
so part of: ACKR1
location: complement(join(705829..705857,706621..706912,707572..707739))
location: region:705829-707739:-1
so has part: feature:707572-707739:-1:exon
so has part: feature:706621-706912:-1:exon
so has part: feature:705829-705857:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:707572-707739:-1:exon

position:707572:-1
position: 707572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:706621-706912:-1:exon

position:706621:-1
position: 706621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:706912:-1
position: 706912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:705829-705857:-1:exon

position:705857:-1
position: 705857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ACKR1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: ACKR1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: atypical chemokine receptor 1
translation: MGNCIPGSPEIVANRTSLDFMDLFNSTYNEDYMYINTDSNDEDFAAAEPCHNHYCPFFHRAAPPYLIATSATSFVATAALLLALFLRPHSWPHGRTFVAQLAACSPIGGTYPP
SIO_010081: ACKR1
subclass of: SO_0000673
so part of: ACKR1
location: complement(join(705829..705857,706621..706912,707572..707592))
location: region:705829-707592:-1
so has part: feature:707572-707592:-1:exon
so has part: feature:706621-706912:-1:exon
so has part: feature:705829-705857:-1:exon

XP_019478634.1
type: Protein
SIO_000068: ncbiprotein

position:707592:-1
position: 707592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:707572-707592:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:706621-706912:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:705829-705857:-1:exon

CADM3
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: CADM3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(710639..717152)
location: region:710639-717152:-1
so has part: feature:710639-717152:-1:exon
subclass of: SO_0000010

100543342
type: Gene
SIO_000068: ncbigene

position:710639:-1
position: 710639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:717152:-1
position: 717152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:710639-717152:-1:exon

CADM3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: CADM3
product: cell adhesion molecule 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_010723938.3
SIO_010081: CADM3
subclass of: SO_0000673
so part of: CADM3
location: complement(join(710639..711057,711322..711390,711687..711812,712380..712669,713491..713565,713900..713990,714374..714544,714761..714898,715355..715507,715624..717152))
location: region:710639-717152:-1
so has part: feature:715624-717152:-1:exon
so has part: feature:715355-715507:-1:exon
so has part: feature:714761-714898:-1:exon
so has part: feature:714374-714544:-1:exon
so has part: feature:713900-713990:-1:exon
so has part: feature:713491-713565:-1:exon
so has part: feature:712380-712669:-1:exon
so has part: feature:711687-711812:-1:exon
so has part: feature:711322-711390:-1:exon
so has part: feature:710639-711057:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:715624-717152:-1:exon

position:715624:-1
position: 715624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:715355-715507:-1:exon

position:715355:-1
position: 715355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:715507:-1
position: 715507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:714761-714898:-1:exon

position:714761:-1
position: 714761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:714898:-1
position: 714898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:714374-714544:-1:exon

position:714374:-1
position: 714374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:714544:-1
position: 714544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:713900-713990:-1:exon

position:713900:-1
position: 713900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:713990:-1
position: 713990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:713491-713565:-1:exon

position:713491:-1
position: 713491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:713565:-1
position: 713565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:712380-712669:-1:exon

position:712380:-1
position: 712380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:712669:-1
position: 712669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:711687-711812:-1:exon

position:711687:-1
position: 711687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:711812:-1
position: 711812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:711322-711390:-1:exon

position:711322:-1
position: 711322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:711390:-1
position: 711390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:710639-711057:-1:exon

position:711057:-1
position: 711057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CADM3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: CADM3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cell adhesion molecule 3
translation: MDLGPKFEGESPKCPPPSSPFLRAVSQPTTSDETVVAGGTVVLKCQVEDPDDSSLQWSNPAQQTLYFGEKRALRDNRIQLERSTPNELTISISDVVLSDEGEYTCSIFTMPVRTAKALVTVLGIPQKPQIFGHEQPIDEEKIARLTCRSSGSKPAAQLRWKKGNKELKAEGTEVVEDSNGKTFTVSSRVEFRVTKEDNDAEVTCTVDHESLQNSERSTTQKLQVHYKPTAKIEPHPQYPREGEKLQLQCDGQGNPVPQEFLWEKEGSDAPLQLSSDSILILPGLLAGRTLEWCPRCDPEAGREMGWWKVHPCHGPTRGLCPCQGLIAVPVFLSSSPDLSQLPTPHVHSTPAPSPGPSQPISHASTATASSSTPAPIQDASPVLSTSSTYHAVIGGVVAVIVFLLLSLLIVLGHYLIRHKGVCIRHGETITARPQQNPPEVVMCTYLTHEAKGSDDAPDADTAIINAEGGQAGGDDKKEYFI
SIO_010081: CADM3
subclass of: SO_0000673
so part of: CADM3
location: complement(join(710939..711057,711322..711390,711687..711812,712380..712669,713491..713565,713900..713990,714374..714544,714761..714898,715355..715507,715624..715837))
location: region:710939-715837:-1
so has part: feature:715624-715837:-1:exon
so has part: feature:715355-715507:-1:exon
so has part: feature:714761-714898:-1:exon
so has part: feature:714374-714544:-1:exon
so has part: feature:713900-713990:-1:exon
so has part: feature:713491-713565:-1:exon
so has part: feature:712380-712669:-1:exon
so has part: feature:711687-711812:-1:exon
so has part: feature:711322-711390:-1:exon
so has part: feature:710939-711057:-1:exon

XP_010722240.2
type: Protein
SIO_000068: ncbiprotein

position:710939:-1
position: 710939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:715837:-1
position: 715837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:715624-715837:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:715355-715507:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:714761-714898:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:714374-714544:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:713900-713990:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:713491-713565:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:712380-712669:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:711687-711812:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:711322-711390:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:710939-711057:-1:exon

LOC100538808
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC100538808
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 789449..797816
location: region:789449-797816:1
so has part: feature:789449-797816:1:exon
subclass of: SO_0000010

100538808
type: Gene
SIO_000068: ncbigene

position:789449:1
position: 789449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:797816:1
position: 797816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:789449-797816:1:exon

LOC100538808
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC100538808
product: Fc receptor-like protein 4, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_019623123.2
SIO_010081: LOC100538808
subclass of: SO_0000673
so part of: LOC100538808
location: join(789449..789750,791928..794134,794626..794646,794792..795049,795543..795812,796138..796422,796644..796913,797447..797816)
location: region:789449-797816:1
so has part: feature:789449-789750:1:exon
so has part: feature:791928-794134:1:exon
so has part: feature:794626-794646:1:exon
so has part: feature:794792-795049:1:exon
so has part: feature:795543-795812:1:exon
so has part: feature:796138-796422:1:exon
so has part: feature:796644-796913:1:exon
so has part: feature:797447-797816:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:789449-789750:1:exon

position:789750:1
position: 789750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:791928-794134:1:exon

position:791928:1
position: 791928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:794134:1
position: 794134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:794626-794646:1:exon

position:794626:1
position: 794626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:794646:1
position: 794646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:794792-795049:1:exon

position:794792:1
position: 794792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:795049:1
position: 795049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:795543-795812:1:exon

position:795543:1
position: 795543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:795812:1
position: 795812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:796138-796422:1:exon

position:796138:1
position: 796138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:796422:1
position: 796422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:796644-796913:1:exon

position:796644:1
position: 796644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:796913:1
position: 796913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:797447-797816:1:exon

position:797447:1
position: 797447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100538808
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC100538808
product: Fc receptor-like protein 4, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
transcript id: XM_010723915.3
SIO_010081: LOC100538808
subclass of: SO_0000673
so part of: LOC100538808
location: join(789450..789750,794792..795049,795543..795812,796138..796422,796644..796913,797447..797815)
location: region:789450-797815:1
so has part: feature:789450-789750:1:exon
so has part: feature:794792-795049:1:exon
so has part: feature:795543-795812:1:exon
so has part: feature:796138-796422:1:exon
so has part: feature:796644-796913:1:exon
so has part: feature:797447-797815:1:exon

position:789450:1
position: 789450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:797815:1
position: 797815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:789450-789750:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:794792-795049:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:795543-795812:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:796138-796422:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:796644-796913:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:797447-797815:1:exon

TRNAR-UCU
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: TRNAR-UCU
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 792921..792994
location: region:792921-792994:1
so has part: feature:792921-792994:1:exon
subclass of: SO_0000663

109371048
type: Gene
SIO_000068: ncbigene

position:792921:1
position: 792921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:792994:1
position: 792994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:792921-792994:1:exon

TRNAR-UCU
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9103
gene: TRNAR-UCU
product: tRNA-Arg
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA arginine (anticodon UCU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:792955..792957,aa:Arg,seq:tct)
SIO_010081: TRNAR-UCU
subclass of: SO_0000673
so part of: TRNAR-UCU
location: 792921..792994
location: region:792921-792994:1
so has part: feature:792921-792994:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:792921-792994:1:exon

LOC100538808
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC100538808
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Fc receptor-like protein 4 isoform X1
translation: MAVSRALLLLAQALGLAVAEMALLTTDPPWSVIFQGESVTLRCQGPRVHGQQPTAWYHNNKLLEHTKTNTYRIQNARYKENGRYKCQSSGSTSSNSITLSVSYDLLILQVPSHAVFEGELLQMRCRGWKAGSLAAVRYYKDGADITKLYSSAEQLSIPHAKTHHSGRYHCSADMHSYLSLKKRESQHLYVSIKELFTSPVLSVASSTEPLEGSPLNLSCTTQLSPYRPHAVLWYLFYGNSTVLRGPTTSSEYQMPTVGLMDTGFYSCVVRTKSSGVRKWSPQVLITIKRVPVSGVSLEVWPQEGQVMEGQRLVLHCSVAVGTGSISFSWHREGSAEVLGRDRSYEIPSTQQSDNGQYYCMASNGDSPARSLLVKVTVVGASSLFCNSVRALLLLAVLGILLLGVVVVHVLTARSREPKGMELRTLMKASASVVLQERMFEAVPARAPRK
SIO_010081: LOC100538808
subclass of: SO_0000673
so part of: LOC100538808
location: join(794104..794134,794626..794646,794792..795049,795543..795812,796138..796422,796644..796913,797447..797661)
location: region:794104-797661:1
so has part: feature:794104-794134:1:exon
so has part: feature:794626-794646:1:exon
so has part: feature:794792-795049:1:exon
so has part: feature:795543-795812:1:exon
so has part: feature:796138-796422:1:exon
so has part: feature:796644-796913:1:exon
so has part: feature:797447-797661:1:exon

XP_019478668.1
type: Protein
SIO_000068: ncbiprotein

position:794104:1
position: 794104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:797661:1
position: 797661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:794104-794134:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:794626-794646:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:794792-795049:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:795543-795812:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:796138-796422:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:796644-796913:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:797447-797661:1:exon

LOC100538808
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC100538808
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Fc receptor-like protein 4 isoform X2
translation: MALLTTDPPWSVIFQGESVTLRCQGPRVHGQQPTAWYHNNKLLEHTKTNTYRIQNARYKENGRYKCQSSGSTSSNSITLSVSYDLLILQVPSHAVFEGELLQMRCRGWKAGSLAAVRYYKDGADITKLYSSAEQLSIPHAKTHHSGRYHCSADMHSYLSLKKRESQHLYVSIKELFTSPVLSVASSTEPLEGSPLNLSCTTQLSPYRPHAVLWYLFYGNSTVLRGPTTSSEYQMPTVGLMDTGFYSCVVRTKSSGVRKWSPQVLITIKRVPVSGVSLEVWPQEGQVMEGQRLVLHCSVAVGTGSISFSWHREGSAEVLGRDRSYEIPSTQQSDNGQYYCMASNGDSPARSLLVKVTVVGASSLFCNSVRALLLLAVLGILLLGVVVVHVLTARSREPKGMELRTLMKASASVVLQERMFEAVPARAPRK
SIO_010081: LOC100538808
subclass of: SO_0000673
so part of: LOC100538808
location: join(794800..795049,795543..795812,796138..796422,796644..796913,797447..797661)
location: region:794800-797661:1
so has part: feature:794800-795049:1:exon
so has part: feature:795543-795812:1:exon
so has part: feature:796138-796422:1:exon
so has part: feature:796644-796913:1:exon
so has part: feature:797447-797661:1:exon

XP_010722217.1
type: Protein
SIO_000068: ncbiprotein

position:794800:1
position: 794800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:794800-795049:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:795543-795812:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:796138-796422:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:796644-796913:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:797447-797661:1:exon

LOC109371041
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC109371041
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 802558..802982
location: region:802558-802982:1
so has part: feature:802558-802982:1:exon
subclass of: SO_0000011

109371041
type: Gene
SIO_000068: ncbigene

position:802558:1
position: 802558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:802982:1
position: 802982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:802558-802982:1:exon

LOC109371041
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC109371041
product: uncharacterized LOC109371041, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 39 samples with support for all annotated introns
transcript id: XR_002121702.1
SIO_010081: LOC109371041
subclass of: SO_0000673
so part of: LOC109371041
location: join(802558..802649,802799..802982)
location: region:802558-802982:1
so has part: feature:802558-802649:1:exon
so has part: feature:802799-802982:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:802558-802649:1:exon

position:802649:1
position: 802649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:802799-802982:1:exon

position:802799:1
position: 802799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109371041
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC109371041
product: uncharacterized LOC109371041, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_002121700.1
SIO_010081: LOC109371041
subclass of: SO_0000673
so part of: LOC109371041
location: join(802563..802649,802775..802982)
location: region:802563-802982:1
so has part: feature:802563-802649:1:exon
so has part: feature:802775-802982:1:exon

position:802563:1
position: 802563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:802563-802649:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:802775-802982:1:exon

position:802775:1
position: 802775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116217461
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC116217461
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(<806243..808197)
location: region:806243-808197:-1
so has part: feature:806243-808197:-1:exon
subclass of: SO_0000010

116217461
type: Gene
SIO_000068: ncbigene

position:806243:-1
position: 806243
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:808197:-1
position: 808197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:806243-808197:-1:exon

LOC116217461
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC116217461
product: tyrosine-protein kinase receptor TYRO3-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
transcript id: XM_031556911.1
SIO_010081: LOC116217461
subclass of: SO_0000673
so part of: LOC116217461
location: complement(join(<806243..806373,806843..807148,807260..807598,808091..808197))
location: region:806243-808197:-1
so has part: feature:808091-808197:-1:exon
so has part: feature:807260-807598:-1:exon
so has part: feature:806843-807148:-1:exon
so has part: feature:806243-806373:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:808091-808197:-1:exon

position:808091:-1
position: 808091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:807260-807598:-1:exon

position:807260:-1
position: 807260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:807598:-1
position: 807598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:806843-807148:-1:exon

position:806843:-1
position: 806843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:807148:-1
position: 807148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:806243-806373:-1:exon

position:806373:-1
position: 806373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116217461
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC116217461
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tyrosine-protein kinase receptor TYRO3-like
translation: MTCSPADAILLLLLPGAALAQLQIRQSPARLWVRPGHTAELNCTDSGWNVDQHRAVNWYREQPGSRLQFIYQSSNSSRSDGKYSGMRRANGLFSLHISSVQKEDSGFYYCASTTHPFEFGDSTRLVVTDAVEPTLSILLPVDADLREPPSAAIPLLCHLYDVPEGWDVVGWQHSNASLVTATSLDERGILSAWSLTWLTAEQWDGTVGCTATQSSTGRSISVTTSQPGSTAQCLQWLPAVLLPSVLTITIQLMLQLCKKPHIGGPGAPQPPQQR
SIO_010081: LOC116217461
subclass of: SO_0000673
so part of: LOC116217461
location: complement(join(<806243..806373,806843..807148,807260..807598,808091..808136))
location: region:806243-808136:-1
so has part: feature:808091-808136:-1:exon
so has part: feature:807260-807598:-1:exon
so has part: feature:806843-807148:-1:exon
so has part: feature:806243-806373:-1:exon

XP_031412771.1
type: Protein
SIO_000068: ncbiprotein

position:808136:-1
position: 808136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:808091-808136:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:807260-807598:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:806843-807148:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:806243-806373:-1:exon

LOC116217463
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC116217463
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 808310..812399
location: region:808310-812399:1
so has part: feature:808310-812399:1:exon
subclass of: SO_0000010

116217463
type: Gene
SIO_000068: ncbigene

position:808310:1
position: 808310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:812399:1
position: 812399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:808310-812399:1:exon

LOC116217463
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC116217463
product: uncharacterized LOC116217463, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_031556931.1
SIO_010081: LOC116217463
subclass of: SO_0000673
so part of: LOC116217463
location: join(808310..809766,809841..810167,810582..810848,811126..811230,811382..811455,812076..812399)
location: region:808310-812399:1
so has part: feature:808310-809766:1:exon
so has part: feature:809841-810167:1:exon
so has part: feature:810582-810848:1:exon
so has part: feature:811126-811230:1:exon
so has part: feature:811382-811455:1:exon
so has part: feature:812076-812399:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:808310-809766:1:exon

position:809766:1
position: 809766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:809841-810167:1:exon

position:809841:1
position: 809841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:810167:1
position: 810167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:810582-810848:1:exon

position:810582:1
position: 810582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:810848:1
position: 810848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:811126-811230:1:exon

position:811126:1
position: 811126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:811230:1
position: 811230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:811382-811455:1:exon

position:811382:1
position: 811382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:811455:1
position: 811455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:812076-812399:1:exon

position:812076:1
position: 812076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116217463
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC116217463
product: uncharacterized LOC116217463, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_031556932.1
SIO_010081: LOC116217463
subclass of: SO_0000673
so part of: LOC116217463
location: join(808310..809766,809850..810167,810582..810848,811126..811230,811382..811455,812076..812399)
location: region:808310-812399:1
so has part: feature:808310-809766:1:exon
so has part: feature:809850-810167:1:exon
so has part: feature:810582-810848:1:exon
so has part: feature:811126-811230:1:exon
so has part: feature:811382-811455:1:exon
so has part: feature:812076-812399:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:808310-809766:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:809850-810167:1:exon

position:809850:1
position: 809850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:810582-810848:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:811126-811230:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:811382-811455:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:812076-812399:1:exon

LOC116217463
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC116217463
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC116217463 isoform X1
translation: MAPGGSSCNPVLVAVGLLPLCTVPAALLELWQPDPVLFVEPGAAVSIRCMANERMDGAGKVLWYRHRPGEPPRLLLNCIDERWDVFSCEYQNSFAVLHIQAAQPKDAALYLCANSIVSKLQFSNGTVLLVGDSWRTHSWVQVLATRWSTRSPLSPVCAVGASGGPVLISWPGGDRPQQVLGLGNSTELMVSPGGAGELCEVRFNASGPHIQRSTELHEAVGGCPLPSAVGMAVAGILLLLLSLCLSARCLLPARTAQCWDRVPVPSSSHQPTVLEPPESQGELLYADLTLSGPTAP
SIO_010081: LOC116217463
subclass of: SO_0000673
so part of: LOC116217463
location: join(809700..809766,809841..810167,810582..810848,811126..811230,811382..811455,812076..812126)
location: region:809700-812126:1
so has part: feature:809700-809766:1:exon
so has part: feature:809841-810167:1:exon
so has part: feature:810582-810848:1:exon
so has part: feature:811126-811230:1:exon
so has part: feature:811382-811455:1:exon
so has part: feature:812076-812126:1:exon

XP_031412791.1
type: Protein
SIO_000068: ncbiprotein

position:809700:1
position: 809700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:812126:1
position: 812126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:809700-809766:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:809841-810167:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:810582-810848:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:811126-811230:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:811382-811455:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:812076-812126:1:exon

LOC116217463
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC116217463
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC116217463 isoform X2
translation: MAPGGSSCNPVLVAVGLLPLCTALLELWQPDPVLFVEPGAAVSIRCMANERMDGAGKVLWYRHRPGEPPRLLLNCIDERWDVFSCEYQNSFAVLHIQAAQPKDAALYLCANSIVSKLQFSNGTVLLVGDSWRTHSWVQVLATRWSTRSPLSPVCAVGASGGPVLISWPGGDRPQQVLGLGNSTELMVSPGGAGELCEVRFNASGPHIQRSTELHEAVGGCPLPSAVGMAVAGILLLLLSLCLSARCLLPARTAQCWDRVPVPSSSHQPTVLEPPESQGELLYADLTLSGPTAP
SIO_010081: LOC116217463
subclass of: SO_0000673
so part of: LOC116217463
location: join(809700..809766,809850..810167,810582..810848,811126..811230,811382..811455,812076..812126)
location: region:809700-812126:1
so has part: feature:809700-809766:1:exon
so has part: feature:809850-810167:1:exon
so has part: feature:810582-810848:1:exon
so has part: feature:811126-811230:1:exon
so has part: feature:811382-811455:1:exon
so has part: feature:812076-812126:1:exon

XP_031412792.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:809700-809766:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:809850-810167:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:810582-810848:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:811126-811230:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:811382-811455:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:812076-812126:1:exon

APH1A
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: APH1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 812270..816263
location: region:812270-816263:1
so has part: feature:812270-816263:1:exon
subclass of: SO_0000010

100539269
type: Gene
SIO_000068: ncbigene

position:812270:1
position: 812270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:816263:1
position: 816263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:812270-816263:1:exon

APH1A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: APH1A
product: aph-1 homolog A, gamma-secretase subunit
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031556912.1
SIO_010081: APH1A
subclass of: SO_0000673
so part of: APH1A
location: join(812270..812541,813461..813631,813912..813985,814075..814197,814287..814414,814876..814999,815420..816263)
location: region:812270-816263:1
so has part: feature:812270-812541:1:exon
so has part: feature:813461-813631:1:exon
so has part: feature:813912-813985:1:exon
so has part: feature:814075-814197:1:exon
so has part: feature:814287-814414:1:exon
so has part: feature:814876-814999:1:exon
so has part: feature:815420-816263:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:812270-812541:1:exon

position:812541:1
position: 812541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:813461-813631:1:exon

position:813461:1
position: 813461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:813631:1
position: 813631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:813912-813985:1:exon

position:813912:1
position: 813912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:813985:1
position: 813985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:814075-814197:1:exon

position:814075:1
position: 814075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:814197:1
position: 814197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:814287-814414:1:exon

position:814287:1
position: 814287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:814414:1
position: 814414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:814876-814999:1:exon

position:814876:1
position: 814876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:814999:1
position: 814999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:815420-816263:1:exon

position:815420:1
position: 815420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

APH1A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: APH1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-secretase subunit APH-1A
translation: MSPTTPRFASPPTAKGALFAPRSLPAYNSRRAPRSLHPLPFPSPPLPPPPRPLGAGPSSSVVPESPSARRSPSSLLTVAADRCGSIILVAGAFFWLVSLLLASLIWFISVHLSDQGNARLQYGLLVFGAAVSVLLQEAFRFAYFKLLKKADEGLATISEDGRSPISLKQMAYVSGLSFGIISGVFSVINILADSIGPGIVGIHGDSPYYFITSAFLTMAVVLLHTFWGVIFFDACEKRRYWCLGLVVISHLVTSGLTFLNPWYVASLVPIYIITFCMGIWAFFTAGGSLHNILKCLSCKQEDDSRVMMYSALQVPFED
SIO_010081: APH1A
subclass of: SO_0000673
so part of: APH1A
location: join(812270..812541,813461..813631,813912..813985,814075..814197,814287..814414,814876..814999,815420..815484)
location: region:812270-815484:1
so has part: feature:812270-812541:1:exon
so has part: feature:813461-813631:1:exon
so has part: feature:813912-813985:1:exon
so has part: feature:814075-814197:1:exon
so has part: feature:814287-814414:1:exon
so has part: feature:814876-814999:1:exon
so has part: feature:815420-815484:1:exon

XP_031412772.1
type: Protein
SIO_000068: ncbiprotein

position:815484:1
position: 815484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:812270-812541:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:813461-813631:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:813912-813985:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:814075-814197:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:814287-814414:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:814876-814999:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:815420-815484:1:exon

CA14
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: CA14
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(816367..>819448)
location: region:816367-819448:-1
so has part: feature:816367-819448:-1:exon
subclass of: SO_0000010

100539423
type: Gene
SIO_000068: ncbigene

position:816367:-1
position: 816367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:819448:-1
position: 819448
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:816367-819448:-1:exon

CA14
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: CA14
product: carbonic anhydrase 14
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_031556935.1
SIO_010081: CA14
subclass of: SO_0000673
so part of: CA14
location: complement(join(816367..816519,816650..816734,816822..816842,816922..817048,817119..817276,817366..817432,817520..817615,818256..818398,818489..818668,819433..>819448))
location: region:816367-819448:-1
so has part: feature:819433-819448:-1:exon
so has part: feature:818489-818668:-1:exon
so has part: feature:818256-818398:-1:exon
so has part: feature:817520-817615:-1:exon
so has part: feature:817366-817432:-1:exon
so has part: feature:817119-817276:-1:exon
so has part: feature:816922-817048:-1:exon
so has part: feature:816822-816842:-1:exon
so has part: feature:816650-816734:-1:exon
so has part: feature:816367-816519:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:819433-819448:-1:exon

position:819433:-1
position: 819433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:818489-818668:-1:exon

position:818489:-1
position: 818489
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:818668:-1
position: 818668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:818256-818398:-1:exon

position:818256:-1
position: 818256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:818398:-1
position: 818398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:817520-817615:-1:exon

position:817520:-1
position: 817520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:817615:-1
position: 817615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:817366-817432:-1:exon

position:817366:-1
position: 817366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:817432:-1
position: 817432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:817119-817276:-1:exon

position:817119:-1
position: 817119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:817276:-1
position: 817276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:816922-817048:-1:exon

position:816922:-1
position: 816922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:817048:-1
position: 817048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:816822-816842:-1:exon

position:816822:-1
position: 816822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:816842:-1
position: 816842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:816650-816734:-1:exon

position:816650:-1
position: 816650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:816734:-1
position: 816734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:816367-816519:-1:exon

position:816519:-1
position: 816519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CA14
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: CA14
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: carbonic anhydrase 14
translation: HWTYEGPHGQHHWPEGHPACGGRSQSPIDIATQRVLPDPSLPPIRPMGYDHPLVPTFSLTNNGHTVVLALPPTLHLEGLPRSFAAAQLHFHWGHSGHPEGAEHLLDGRRAPAEMHLVHYDAERYANASEAQHHAAGLAVLGILLEVGDEPNAAYANILNHLGSIRYAGQTTSIPSFSVQELLPERLDRYYRYNGSLTTPPCLQSVLWTVFQQPVRISAAQLEQLQGSLYATAVDEPSAERLEDNFRDPQDLNQRPVLASFTSSPQGYSTGEVIAIVFGTVLGSLGLFLTVHFVNKRLRARRTREQDVVFKASSRRAASDESHRP
SIO_010081: CA14
subclass of: SO_0000673
so part of: CA14
location: complement(join(816438..816519,816650..816734,816822..816842,816922..817048,817119..817276,817366..817432,817520..817615,818256..818398,818489..818668,819433..>819448))
location: region:816438-819448:-1
so has part: feature:819433-819448:-1:exon
so has part: feature:818489-818668:-1:exon
so has part: feature:818256-818398:-1:exon
so has part: feature:817520-817615:-1:exon
so has part: feature:817366-817432:-1:exon
so has part: feature:817119-817276:-1:exon
so has part: feature:816922-817048:-1:exon
so has part: feature:816822-816842:-1:exon
so has part: feature:816650-816734:-1:exon
so has part: feature:816438-816519:-1:exon

XP_031412795.1
type: Protein
SIO_000068: ncbiprotein

position:816438:-1
position: 816438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:819433-819448:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:818489-818668:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:818256-818398:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:817520-817615:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:817366-817432:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:817119-817276:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:816922-817048:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:816822-816842:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:816650-816734:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:816438-816519:-1:exon

CIART
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: CIART
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 819617..820844
location: region:819617-820844:1
so has part: feature:819617-820844:1:exon
subclass of: SO_0000010

104914432
type: Gene
SIO_000068: ncbigene

position:819617:1
position: 819617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:820844:1
position: 820844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:819617-820844:1:exon

CIART
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: CIART
product: circadian associated repressor of transcription
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 206 samples with support for all annotated introns
transcript id: XM_031556934.1
SIO_010081: CIART
subclass of: SO_0000673
so part of: CIART
location: join(819617..819683,819847..819922,820309..820387,820506..820844)
location: region:819617-820844:1
so has part: feature:819617-819683:1:exon
so has part: feature:819847-819922:1:exon
so has part: feature:820309-820387:1:exon
so has part: feature:820506-820844:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:819617-819683:1:exon

position:819683:1
position: 819683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:819847-819922:1:exon

position:819847:1
position: 819847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:819922:1
position: 819922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:820309-820387:1:exon

position:820309:1
position: 820309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:820387:1
position: 820387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:820506-820844:1:exon

position:820506:1
position: 820506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CIART
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: CIART
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: circadian-associated transcriptional repressor
translation: MGRYDKGLSSFQQSVAMDRIQRIIGVLQKPEMGARYLGTLLQVEVMLKVWFPHVAPKAGPEPDPVGVLLLLRDRRSAHGDGATSGTSGGTSGTASGVTSETTPTGTTHPKCPLPTRTGAPTPPAAPDV
SIO_010081: CIART
subclass of: SO_0000673
so part of: CIART
location: join(819904..819922,820309..820387,820506..820794)
location: region:819904-820794:1
so has part: feature:819904-819922:1:exon
so has part: feature:820309-820387:1:exon
so has part: feature:820506-820794:1:exon

XP_031412794.1
type: Protein
SIO_000068: ncbiprotein

position:819904:1
position: 819904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:820794:1
position: 820794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:819904-819922:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:820309-820387:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:820506-820794:1:exon

MRPS21
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: MRPS21
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 822186..823300
location: region:822186-823300:1
so has part: feature:822186-823300:1:exon
subclass of: SO_0000010

100538962
type: Gene
SIO_000068: ncbigene

position:822186:1
position: 822186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:823300:1
position: 823300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:822186-823300:1:exon

MRPS21
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: MRPS21
product: mitochondrial ribosomal protein S21
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 222 samples with support for all annotated introns
transcript id: XM_010723919.3
SIO_010081: MRPS21
subclass of: SO_0000673
so part of: MRPS21
location: join(822186..822396,823037..823300)
location: region:822186-823300:1
so has part: feature:822186-822396:1:exon
so has part: feature:823037-823300:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:822186-822396:1:exon

position:822396:1
position: 822396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:823037-823300:1:exon

position:823037:1
position: 823037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MRPS21
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: MRPS21
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 28S ribosomal protein S21, mitochondrial
translation: MANHLRFIGRTVMVQNGNVDAAYGALSRILSQDGITESVKQRRYYEKPCRKRQRLAYEACRRVYNNEMARKISFLSRKSRTDPWLGC
SIO_010081: MRPS21
subclass of: SO_0000673
so part of: MRPS21
location: join(822314..822396,823037..823217)
location: region:822314-823217:1
so has part: feature:822314-822396:1:exon
so has part: feature:823037-823217:1:exon

XP_010722221.1
type: Protein
SIO_000068: ncbiprotein

position:822314:1
position: 822314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:823217:1
position: 823217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:822314-822396:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:823037-823217:1:exon

PRPF3
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: PRPF3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 824584..836571
location: region:824584-836571:1
so has part: feature:824584-836571:1:exon
subclass of: SO_0000010

100539116
type: Gene
SIO_000068: ncbigene

position:824584:1
position: 824584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:836571:1
position: 836571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:824584-836571:1:exon

PRPF3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: PRPF3
product: pre-mRNA processing factor 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 220 samples with support for all annotated introns
transcript id: XM_003212778.3
SIO_010081: PRPF3
subclass of: SO_0000673
so part of: PRPF3
location: join(824584..826245,827096..827226,830446..830592,831082..831165,831275..831495,831859..832165,832854..833020,833587..833669,833949..834092,834254..834353,834825..834938,835145..835263,835711..835794,835910..835971,836295..836571)
location: region:824584-836571:1
so has part: feature:824584-826245:1:exon
so has part: feature:827096-827226:1:exon
so has part: feature:830446-830592:1:exon
so has part: feature:831082-831165:1:exon
so has part: feature:831275-831495:1:exon
so has part: feature:831859-832165:1:exon
so has part: feature:832854-833020:1:exon
so has part: feature:833587-833669:1:exon
so has part: feature:833949-834092:1:exon
so has part: feature:834254-834353:1:exon
so has part: feature:834825-834938:1:exon
so has part: feature:835145-835263:1:exon
so has part: feature:835711-835794:1:exon
so has part: feature:835910-835971:1:exon
so has part: feature:836295-836571:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:824584-826245:1:exon

position:826245:1
position: 826245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:827096-827226:1:exon

position:827096:1
position: 827096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:827226:1
position: 827226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:830446-830592:1:exon

position:830446:1
position: 830446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:830592:1
position: 830592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:831082-831165:1:exon

position:831082:1
position: 831082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:831165:1
position: 831165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:831275-831495:1:exon

position:831275:1
position: 831275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:831495:1
position: 831495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:831859-832165:1:exon

position:831859:1
position: 831859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:832165:1
position: 832165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:832854-833020:1:exon

position:832854:1
position: 832854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:833020:1
position: 833020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:833587-833669:1:exon

position:833587:1
position: 833587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:833669:1
position: 833669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:833949-834092:1:exon

position:833949:1
position: 833949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:834092:1
position: 834092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:834254-834353:1:exon

position:834254:1
position: 834254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:834353:1
position: 834353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:834825-834938:1:exon

position:834825:1
position: 834825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:834938:1
position: 834938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:835145-835263:1:exon

position:835145:1
position: 835145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:835263:1
position: 835263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:835711-835794:1:exon

position:835711:1
position: 835711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:835794:1
position: 835794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:835910-835971:1:exon

position:835910:1
position: 835910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:835971:1
position: 835971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:836295-836571:1:exon

position:836295:1
position: 836295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PRPF3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: PRPF3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1
translation: MSLSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDKLFEAVEEGRSSRHSKSNSDRNRKRELKDVFGDDSEVSKESSGVKKRRIPRFEEVEDEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKISSSSQSERLPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTYFDPRVSITPAQRQKRTFKFHEKGKFEKIAQRLRTKAQLEKLQAEISQAARKTGIHTSTKLALITPKKELKEGEIPEIEWWDSYIIPNGLDLKGGTSSKKDEYFGITNLVEHPAQLNPPVDSDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKAKKIKKLKEDVSQGVHIAVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLHRIKWDEQTSNTKGEDDDESDEESVKKTNKCSLVWEGTAKDRSFGEMKFKQCPTENMAREHFKKHGAEHYWDLALSESVLESTD
SIO_010081: PRPF3
subclass of: SO_0000673
so part of: PRPF3
location: join(826101..826245,827096..827226,830446..830592,831082..831165,831275..831495,831859..832165,832854..833020,833587..833669,833949..834092,834254..834353,834825..834938,835145..835263,835711..835794,835910..835971,836295..836441)
location: region:826101-836441:1
so has part: feature:826101-826245:1:exon
so has part: feature:827096-827226:1:exon
so has part: feature:830446-830592:1:exon
so has part: feature:831082-831165:1:exon
so has part: feature:831275-831495:1:exon
so has part: feature:831859-832165:1:exon
so has part: feature:832854-833020:1:exon
so has part: feature:833587-833669:1:exon
so has part: feature:833949-834092:1:exon
so has part: feature:834254-834353:1:exon
so has part: feature:834825-834938:1:exon
so has part: feature:835145-835263:1:exon
so has part: feature:835711-835794:1:exon
so has part: feature:835910-835971:1:exon
so has part: feature:836295-836441:1:exon

XP_003212826.1
type: Protein
SIO_000068: ncbiprotein

position:826101:1
position: 826101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:836441:1
position: 836441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:826101-826245:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:827096-827226:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:830446-830592:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:831082-831165:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:831275-831495:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:831859-832165:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:832854-833020:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:833587-833669:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:833949-834092:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:834254-834353:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:834825-834938:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:835145-835263:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:835711-835794:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:835910-835971:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:836295-836441:1:exon

PRPF3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: PRPF3
product: pre-mRNA processing factor 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 114 samples with support for all annotated introns
transcript id: XM_010723920.2
SIO_010081: PRPF3
subclass of: SO_0000673
so part of: PRPF3
location: join(827131..827226,829500..829595,830446..830592,831082..831165,831275..831495,831859..832165,832854..833020,833587..833669,833949..834092,834254..834353,834825..834938,835145..835263,835711..835794,835910..835971,836295..836571)
location: region:827131-836571:1
so has part: feature:827131-827226:1:exon
so has part: feature:829500-829595:1:exon
so has part: feature:830446-830592:1:exon
so has part: feature:831082-831165:1:exon
so has part: feature:831275-831495:1:exon
so has part: feature:831859-832165:1:exon
so has part: feature:832854-833020:1:exon
so has part: feature:833587-833669:1:exon
so has part: feature:833949-834092:1:exon
so has part: feature:834254-834353:1:exon
so has part: feature:834825-834938:1:exon
so has part: feature:835145-835263:1:exon
so has part: feature:835711-835794:1:exon
so has part: feature:835910-835971:1:exon
so has part: feature:836295-836571:1:exon

position:827131:1
position: 827131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:827131-827226:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:829500-829595:1:exon

position:829500:1
position: 829500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:829595:1
position: 829595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:830446-830592:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:831082-831165:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:831275-831495:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:831859-832165:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:832854-833020:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:833587-833669:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:833949-834092:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:834254-834353:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:834825-834938:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:835145-835263:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:835711-835794:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:835910-835971:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:836295-836571:1:exon

PRPF3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: PRPF3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: U4/U6 small nuclear ribonucleoprotein Prp3 isoform X2
translation: MLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKISSSSQSERLPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTYFDPRVSITPAQRQKRTFKFHEKGKFEKIAQRLRTKAQLEKLQAEISQAARKTGIHTSTKLALITPKKELKEGEIPEIEWWDSYIIPNGLDLKGGTSSKKDEYFGITNLVEHPAQLNPPVDSDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKAKKIKKLKEDVSQGVHIAVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLHRIKWDEQTSNTKGEDDDESDEESVKKTNKCSLVWEGTAKDRSFGEMKFKQCPTENMAREHFKKHGAEHYWDLALSESVLESTD
SIO_010081: PRPF3
subclass of: SO_0000673
so part of: PRPF3
location: join(830575..830592,831082..831165,831275..831495,831859..832165,832854..833020,833587..833669,833949..834092,834254..834353,834825..834938,835145..835263,835711..835794,835910..835971,836295..836441)
location: region:830575-836441:1
so has part: feature:830575-830592:1:exon
so has part: feature:831082-831165:1:exon
so has part: feature:831275-831495:1:exon
so has part: feature:831859-832165:1:exon
so has part: feature:832854-833020:1:exon
so has part: feature:833587-833669:1:exon
so has part: feature:833949-834092:1:exon
so has part: feature:834254-834353:1:exon
so has part: feature:834825-834938:1:exon
so has part: feature:835145-835263:1:exon
so has part: feature:835711-835794:1:exon
so has part: feature:835910-835971:1:exon
so has part: feature:836295-836441:1:exon

XP_010722222.1
type: Protein
SIO_000068: ncbiprotein

position:830575:1
position: 830575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:830575-830592:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:831082-831165:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:831275-831495:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:831859-832165:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:832854-833020:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:833587-833669:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:833949-834092:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:834254-834353:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:834825-834938:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:835145-835263:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:835711-835794:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:835910-835971:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:836295-836441:1:exon

RPRD2
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: RPRD2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 836543..853036
location: region:836543-853036:1
so has part: feature:836543-853036:1:exon
subclass of: SO_0000010

100539577
type: Gene
SIO_000068: ncbigene

position:836543:1
position: 836543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:853036:1
position: 853036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:836543-853036:1:exon

RPRD2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: RPRD2
product: regulation of nuclear pre-mRNA domain containing 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031556913.1
SIO_010081: RPRD2
subclass of: SO_0000673
so part of: RPRD2
location: join(836543..836744,837304..837489,843220..843349,843669..843766,844992..845069,846327..846382,847029..847155,847468..847643,848120..848405,848760..849026,849304..849507,850174..852371,852520..853036)
location: region:836543-853036:1
so has part: feature:836543-836744:1:exon
so has part: feature:837304-837489:1:exon
so has part: feature:843220-843349:1:exon
so has part: feature:843669-843766:1:exon
so has part: feature:844992-845069:1:exon
so has part: feature:846327-846382:1:exon
so has part: feature:847029-847155:1:exon
so has part: feature:847468-847643:1:exon
so has part: feature:848120-848405:1:exon
so has part: feature:848760-849026:1:exon
so has part: feature:849304-849507:1:exon
so has part: feature:850174-852371:1:exon
so has part: feature:852520-853036:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:836543-836744:1:exon

position:836744:1
position: 836744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:837304-837489:1:exon

position:837304:1
position: 837304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:837489:1
position: 837489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:843220-843349:1:exon

position:843220:1
position: 843220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:843349:1
position: 843349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:843669-843766:1:exon

position:843669:1
position: 843669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:843766:1
position: 843766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:844992-845069:1:exon

position:844992:1
position: 844992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:845069:1
position: 845069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:846327-846382:1:exon

position:846327:1
position: 846327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:846382:1
position: 846382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:847029-847155:1:exon

position:847029:1
position: 847029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:847155:1
position: 847155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:847468-847643:1:exon

position:847468:1
position: 847468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:847643:1
position: 847643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:848120-848405:1:exon

position:848120:1
position: 848120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:848405:1
position: 848405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:848760-849026:1:exon

position:848760:1
position: 848760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:849026:1
position: 849026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:849304-849507:1:exon

position:849304:1
position: 849304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:849507:1
position: 849507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:850174-852371:1:exon

position:850174:1
position: 850174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:852371:1
position: 852371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:852520-853036:1:exon

position:852520:1
position: 852520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RPRD2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: RPRD2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: regulation of nuclear pre-mRNA domain-containing protein 2
translation: MIKEIFFKTNQLTFVFWIHSALGGAGANLLAATRLCCGVSELLWKELFWSRGGEIVFKVVFDPSGARGGGRASSSAASSSAGALEASLDRKLQAVTNTMESIQGLSSWCLENKRHHSTIVYHWMKWLRRSAFPHRLNLFYLANDVIQNCKRKNAIVFRDTFAEVLPEAASLVKDPSVSKSIERIFKIWEDRNVYPEETILALKKLCTTFKTQKQLKETLNKQPNKPWKKSQTASANPKAALKSKIVAEFRPQSLIDELLLYKRSEDQIELKEKQLSTMRVDVCSTETLKCLKDKTGGKKFSKEFEEASSKLEEFVNGLDKQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKTFANRVSNLKKKLDQLKATLPDPEESPVPSPSMDAPSPTGSESPFQGMGEEDNSHSPAVGSHKPGSPEPVTDNRDVEDMELSDVEDDTSKIIVEERKEKQAAPTSAPAKTENTPKVVPCTTATATTSVTVTAPAPTPPAPKPVSSAPISSSPALALPNLANVDLAKISSILSSLTSVMKNTGVSPASRPSPGTPTSPTSLTSGLKTPAMGTPSAPSNPLANILSKVEITPESILSALSKTQTQTAPALQGLSSLLQSVAGNTIQSSETASQSTSASPANTTVPCLKGRNIPSNTQSFISKNFGYSPNSSAAEVSSTSVNKAPVGHTAGLSSSGFKPPTNSLGFSSSHPPSPSSLLTTDTSMSQPSEISKAKLESEPPSPSLEMKIHNFLKGNPGFSGLNLNIPILSSLGSNIAPESHSSDFQRGPTSTSMDNVDGTPVRDERSGTPTQDEMMDKPTSSNVDTISLLSKIMSPGSSTPSSTRSPLQSRDDGYPQELSNSVHTYRPFSLGRDSPAGMYKQSADSMEIPSSLMDSSQEKFYPDTSFQEDEDYRDFDYSGPPPSAMLNLEKKPAKSILKSSKLSEGAEYQPVLPSYGQRSQDFSVKSSFPQSMRSILDQSESCDTLSTSPGMYGSYSLRGNDSTSDGSPSPSKNDVFFTPDSNHNNLPKPVVHSGLSQKQYPDSPHSIPHRSLFSSQSTLPSPAGRPPAPGVDKSLGSSISATSTIEFKNMLKNASRKPSEEKHFSQIPKSSSNEGVSHSQAGASKGEQQQQQQQQEEHYRIETRVSSSCLDLPDSTEEKGAPIETLGYHNASSRGMSGEPIQTVESIRVLGKGSRGHGREASRSGWFEISNTGSAFDNGPSSASELPGMGGFQAQYKERVPPFQESVNNFRTNNFSPAFDHHMPPPIAPPPIEHGTPFPRDPVGPPAAPPKDHGSLFPRDHSVPPHMPPVDHANPFSKETSSPLSLPHGVPPTSLRGATPGSPSPLAVEHSGGAFPKEQHGTVHQGTMKEHFSVHAGPREPTQPQRDHGGAPLGRVREGVGMASLGREQLGPTRSVTPIAHRDGANRGGMMVRTPRAEFRPREPFMNRDPFHSLKRPRPTFGRGSPFFAPKRPFFPPRY
SIO_010081: RPRD2
subclass of: SO_0000673
so part of: RPRD2
location: join(836543..836744,837304..837489,843220..843349,843669..843766,844992..845069,846327..846382,847029..847155,847468..847643,848120..848405,848760..849026,849304..849507,850174..852371,852520..852924)
location: region:836543-852924:1
so has part: feature:836543-836744:1:exon
so has part: feature:837304-837489:1:exon
so has part: feature:843220-843349:1:exon
so has part: feature:843669-843766:1:exon
so has part: feature:844992-845069:1:exon
so has part: feature:846327-846382:1:exon
so has part: feature:847029-847155:1:exon
so has part: feature:847468-847643:1:exon
so has part: feature:848120-848405:1:exon
so has part: feature:848760-849026:1:exon
so has part: feature:849304-849507:1:exon
so has part: feature:850174-852371:1:exon
so has part: feature:852520-852924:1:exon

XP_031412773.1
type: Protein
SIO_000068: ncbiprotein

position:852924:1
position: 852924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:836543-836744:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:837304-837489:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:843220-843349:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:843669-843766:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:844992-845069:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:846327-846382:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:847029-847155:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:847468-847643:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:848120-848405:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:848760-849026:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:849304-849507:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:850174-852371:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:852520-852924:1:exon

TARS2
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: TARS2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <857537..862232
location: region:857537-862232:1
so has part: feature:857537-862232:1:exon
subclass of: SO_0000010

100547707
type: Gene
SIO_000068: ncbigene

position:857537:1
position: 857537
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:862232:1
position: 862232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:857537-862232:1:exon

TARS2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: TARS2
product: threonyl-tRNA synthetase 2, mitochondrial
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 218 samples with support for all annotated introns
transcript id: XM_010723942.2
SIO_010081: TARS2
subclass of: SO_0000673
so part of: TARS2
location: join(<857537..857626,858040..858161,858233..858350,858482..858546,858621..858699,858771..858917,858991..859089,859239..859405,859484..859646,859722..859859,860026..860103,860239..860339,860606..860707,860971..861043,861115..861229,861997..862232)
location: region:857537-862232:1
so has part: feature:857537-857626:1:exon
so has part: feature:858040-858161:1:exon
so has part: feature:858233-858350:1:exon
so has part: feature:858482-858546:1:exon
so has part: feature:858621-858699:1:exon
so has part: feature:858771-858917:1:exon
so has part: feature:858991-859089:1:exon
so has part: feature:859239-859405:1:exon
so has part: feature:859484-859646:1:exon
so has part: feature:859722-859859:1:exon
so has part: feature:860026-860103:1:exon
so has part: feature:860239-860339:1:exon
so has part: feature:860606-860707:1:exon
so has part: feature:860971-861043:1:exon
so has part: feature:861115-861229:1:exon
so has part: feature:861997-862232:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:857537-857626:1:exon

position:857626:1
position: 857626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:858040-858161:1:exon

position:858040:1
position: 858040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:858161:1
position: 858161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:858233-858350:1:exon

position:858233:1
position: 858233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:858350:1
position: 858350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:858482-858546:1:exon

position:858482:1
position: 858482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:858546:1
position: 858546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:858621-858699:1:exon

position:858621:1
position: 858621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:858699:1
position: 858699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:858771-858917:1:exon

position:858771:1
position: 858771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:858917:1
position: 858917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:858991-859089:1:exon

position:858991:1
position: 858991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:859089:1
position: 859089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:859239-859405:1:exon

position:859239:1
position: 859239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:859405:1
position: 859405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:859484-859646:1:exon

position:859484:1
position: 859484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:859646:1
position: 859646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:859722-859859:1:exon

position:859722:1
position: 859722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:859859:1
position: 859859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:860026-860103:1:exon

position:860026:1
position: 860026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:860103:1
position: 860103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:860239-860339:1:exon

position:860239:1
position: 860239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:860339:1
position: 860339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:860606-860707:1:exon

position:860606:1
position: 860606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:860707:1
position: 860707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:860971-861043:1:exon

position:860971:1
position: 860971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:861043:1
position: 861043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:861115-861229:1:exon

position:861115:1
position: 861115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:861229:1
position: 861229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:861997-862232:1:exon

position:861997:1
position: 861997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TARS2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: TARS2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: threonine--tRNA ligase, mitochondrial
translation: VNGELRDLKRPLESDAELELLDFSAPEGRAAFWQSSAFILGAAVEQFYGATICSTVATEDGFFCDAHMGDRTVQRSELPVLEDACMAFAHSQHPFERLEATREELLELFKHNSFQLQRIEEEVTSPMATVYRCGPLLQLCRGPLLPHTGLIGALRVLTSSAAFWQGPSGRLSLQRIAAIAFPSTQELEAWQQDQDAAALRDHRRIGKEQELFFFHALSPGSCFFLPRGAHIYNTLIDFIRSEYQARGFSEVVTPNIFSPRLWELSGHWQHYSAHMFSFTAGTETLSLKPMNCPAHCLMFAHRPRSWRELPLRLADFGVLHRNEPPGSLTGLTRVRRFQQDDAHIFCALEQLEAEIGACLDFVRSIYATLGFSFQMALATRPDGFLGDAATWDRAEQQLEKSLQDFGEPWELSQGDGAFYGPKIDIRIQDALGRHHQCGTIQLDFQMPERFGLEYASAAGGTARPVLIHRAVLGSVERMVAVMAESCGGKWPLWLSPLQAMVIPQAPDTEGYAREVHAMLRRDGVMADLDADAGATLGRKIRRAQLTHYNFQLVVGRREQEHGTVSVRTRDNRQLGEHSLGQVLQRLRELRDARVPNAEELF
SIO_010081: TARS2
subclass of: SO_0000673
so part of: TARS2
location: join(<857537..857626,858040..858161,858233..858350,858482..858546,858621..858699,858771..858917,858991..859089,859239..859405,859484..859646,859722..859859,860026..860103,860239..860339,860606..860707,860971..861043,861115..861229,861997..862145)
location: region:857537-862145:1
so has part: feature:857537-857626:1:exon
so has part: feature:858040-858161:1:exon
so has part: feature:858233-858350:1:exon
so has part: feature:858482-858546:1:exon
so has part: feature:858621-858699:1:exon
so has part: feature:858771-858917:1:exon
so has part: feature:858991-859089:1:exon
so has part: feature:859239-859405:1:exon
so has part: feature:859484-859646:1:exon
so has part: feature:859722-859859:1:exon
so has part: feature:860026-860103:1:exon
so has part: feature:860239-860339:1:exon
so has part: feature:860606-860707:1:exon
so has part: feature:860971-861043:1:exon
so has part: feature:861115-861229:1:exon
so has part: feature:861997-862145:1:exon

XP_010722244.1
type: Protein
SIO_000068: ncbiprotein

position:862145:1
position: 862145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:857537-857626:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:858040-858161:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:858233-858350:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:858482-858546:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:858621-858699:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:858771-858917:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:858991-859089:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:859239-859405:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:859484-859646:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:859722-859859:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:860026-860103:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:860239-860339:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:860606-860707:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:860971-861043:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:861115-861229:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:861997-862145:1:exon

ECM1
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: ECM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 862746..867037
location: region:862746-867037:1
so has part: feature:862746-867037:1:exon
subclass of: SO_0000010

104914433
type: Gene
SIO_000068: ncbigene

position:862746:1
position: 862746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:867037:1
position: 867037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:862746-867037:1:exon

ECM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: ECM1
product: extracellular matrix protein 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 219 samples with support for all annotated introns
transcript id: XM_019623122.2
SIO_010081: ECM1
subclass of: SO_0000673
so part of: ECM1
location: join(862746..862855,863428..863487,863858..864180,864628..864978,865784..866004,866331..866418,866513..867037)
location: region:862746-867037:1
so has part: feature:862746-862855:1:exon
so has part: feature:863428-863487:1:exon
so has part: feature:863858-864180:1:exon
so has part: feature:864628-864978:1:exon
so has part: feature:865784-866004:1:exon
so has part: feature:866331-866418:1:exon
so has part: feature:866513-867037:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:862746-862855:1:exon

position:862855:1
position: 862855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:863428-863487:1:exon

position:863428:1
position: 863428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:863487:1
position: 863487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:863858-864180:1:exon

position:863858:1
position: 863858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:864180:1
position: 864180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:864628-864978:1:exon

position:864628:1
position: 864628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:864978:1
position: 864978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:865784-866004:1:exon

position:865784:1
position: 865784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:866004:1
position: 866004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:866331-866418:1:exon

position:866331:1
position: 866331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:866418:1
position: 866418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:866513-867037:1:exon

position:866513:1
position: 866513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ECM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: ECM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: extracellular matrix protein 1
translation: MAALGLLLLLLGTAVADLKPQHEQLIQQSHEIQQLQQEEQDFHLSPNIVPSAGADDIPYPRAPSHASTWGSILEGFPPAWPLPDDLSRYCRSPSLIPRAPRPSLPPAAFAHLRRQVAALDSFWPRLDSCCQHHTPLPCARRAWTDVLDTFCEDEFGVKTRQFHCCHRHGAARRRCFADATMGTAEITEITEITVFEPVLVPSFPPGEPNAANIENICRLRGLRPSPKGLPGPRARFHSRLERDFGRCCHNSSLECAHTAWQRGLERFCREEGAVKTRQHRCCKRGLGQARSRCFATAAPHPAYDQEVHNISLARPGPAMLRTLCGPIRLLSKRRPVPELLEAVTTTCCALPQDEQSPCAEEQLSQQIDVLCAAPRSSWRDPRGCCAWGGNERLRCFEEEYLEGVTLGAAIPPPPSASSLNIPVIKVLWCHTALRPPSSQCGCFGGGKGGVVLGCVFGCEILSVCFRGVAAVSLFVDRGAPCLAPTRVRGSLWTAGAACCTWPHVPTVCTVHPHMWTTAGLCPFPPCGPPSR
SIO_010081: ECM1
subclass of: SO_0000673
so part of: ECM1
location: join(862813..862855,863428..863487,863858..864180,864628..864978,865784..866004,866331..866418,866513..867022)
location: region:862813-867022:1
so has part: feature:862813-862855:1:exon
so has part: feature:863428-863487:1:exon
so has part: feature:863858-864180:1:exon
so has part: feature:864628-864978:1:exon
so has part: feature:865784-866004:1:exon
so has part: feature:866331-866418:1:exon
so has part: feature:866513-867022:1:exon

XP_019478667.1
type: Protein
SIO_000068: ncbiprotein

position:862813:1
position: 862813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:867022:1
position: 867022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:862813-862855:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:863428-863487:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:863858-864180:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:864628-864978:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:865784-866004:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:866331-866418:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:866513-867022:1:exon