Meleagris gallopavo isolate NT-WF06-2002-E0010 breed Aviagen turkey brand Nicholas breeding stock chromosome 25, Turkey_5.1, whole genome shotgun sequence.
type: Entry
definition: Meleagris gallopavo isolate NT-WF06-2002-E0010 breed Aviagen turkey brand Nicholas breeding stock chromosome 25, Turkey_5.1, whole genome shotgun sequence.
sequence version: NC_015035.2
sequence date: 2019-11-19
sequence: sequence
division: CON
label: NC_015035.2
type: RefSeq
SIO_000068: refseq
dblink: PRJNA62397
dblink: SAMN02981253
keyword: WGS
keyword: RefSeq
source: Meleagris gallopavo (turkey)
organism: Meleagris gallopavo
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris.
reference: 1
references: 20838655
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM000986.2.\nOn Dec 18, 2014 this sequence version replaced NC_015035.1.\nAssembly name: Turkey_5.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Turkey Genome Consortium on\n2014/11/24. The original whole-genome shotgun project has the\naccession ADDD00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Turkey Genome Consortium\nAssembly Date :: 2013\nAssembly Method :: MaSuRCA v. 1.9.2\nAssembly Name :: Turkey_5.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 35.0x\nSequencing Technology :: Illumina GAII; Sanger; 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Meleagris gallopavo Annotation\n Release 103\nAnnotation Version :: 103\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.2\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 5601919
topology: linear
so has quality: SO_0000987
location: 1..5601919
location: region:1-5601919:1
RO_0002162: 9103

NC_015035
type: RefSeq
SIO_000068: refseq

PRJNA62397
type: BioProject
SIO_000068: bioproject

SAMN02981253
type: BioSample
SIO_000068: biosample

1
title: Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis
author: Dalloul, R.A.
author: Long, J.A.
author: Zimin, A.V.
author: Aslam, L.
author: Beal, K.
author: Blomberg Le Ann
author: Bouffard, P.
author: Burt, D.W.
author: Crasta, O.
author: Crooijmans, R.P.
author: Cooper, K.
author: Coulombe, R.A.
author: De, S.
author: Delany, M.E.
author: Dodgson, J.B.
author: Dong, J.J.
author: Evans, C.
author: Frederickson, K.M.
author: Flicek, P.
author: Florea, L.
author: Folkerts, O.
author: Groenen, M.A.
author: Harkins, T.T.
author: Herrero, J.
author: Hoffmann, S.
author: Megens, H.J.
author: Jiang, A.
author: de Jong, P.
author: Kaiser, P.
author: Kim, H.
author: Kim, K.W.
author: Kim, S.
author: Langenberger, D.
author: Lee, M.K.
author: Lee, T.
author: Mane, S.
author: Marcais, G.
author: Marz, M.
author: McElroy, A.P.
author: Modise, T.
author: Nefedov, M.
author: Notredame, C.
author: Paton, I.R.
author: Payne, W.S.
author: Pertea, G.
author: Prickett, D.
author: Puiu, D.
author: Qioa, D.
author: Raineri, E.
author: Ruffier, M.
author: Salzberg, S.L.
author: Schatz, M.C.
author: Scheuring, C.
author: Schmidt, C.J.
author: Schroeder, S.
author: Searle, S.M.
author: Smith, E.J.
author: Smith, J.
author: Sonstegard, T.S.
author: Stadler, P.F.
author: Tafer, H.
author: Tu, Z.J.
author: Van Tassell, C.P.
author: Vilella, A.J.
author: Williams, K.P.
author: Yorke, J.A.
author: Zhang, L.
author: Zhang, H.B.
author: Zhang, X.
author: Zhang, Y.
author: Reed, K.M.
journal: PLoS Biol. 8 (9) (2010)
pubmed: 20838655

20838655
type: PubMed
SIO_000068: pubmed

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5601919:1
position: 5601919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5601919:1:source
so part of: sequence
organism: Meleagris gallopavo
mol type: genomic DNA
isolate: NT-WF06-2002-E0010
chromosome: 25
sex: female
tissue type: blood
breed: Aviagen turkey brand Nicholas breeding stock
note: donated by Nicholas Turkey Breeding Farms

9103
type: Taxonomy
SIO_000068: taxonomy

LOC104914253
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914253
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6134..8330)
location: region:6134-8330:-1
so has part: feature:6134-8330:-1:exon
subclass of: SO_0000011

104914253
type: Gene
SIO_000068: ncbigene

position:6134:-1
position: 6134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8330:-1
position: 8330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6134-8330:-1:exon

LOC104914253
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC104914253
product: uncharacterized LOC104914253, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
transcript id: XR_795916.2
SIO_010081: LOC104914253
subclass of: SO_0000673
so part of: LOC104914253
location: complement(join(6134..6152,6241..6279,7204..7317,8271..8330))
location: region:6134-8330:-1
so has part: feature:8271-8330:-1:exon
so has part: feature:7204-7317:-1:exon
so has part: feature:6241-6279:-1:exon
so has part: feature:6134-6152:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8271-8330:-1:exon

position:8271:-1
position: 8271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7204-7317:-1:exon

position:7204:-1
position: 7204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7317:-1
position: 7317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6241-6279:-1:exon

position:6241:-1
position: 6241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6279:-1
position: 6279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6134-6152:-1:exon

position:6152:-1
position: 6152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104914253
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC104914253
product: uncharacterized LOC104914253, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
transcript id: XR_795917.3
SIO_010081: LOC104914253
subclass of: SO_0000673
so part of: LOC104914253
location: complement(join(6134..6152,6241..6279,7204..7317,7958..8218))
location: region:6134-8218:-1
so has part: feature:7958-8218:-1:exon
so has part: feature:7204-7317:-1:exon
so has part: feature:6241-6279:-1:exon
so has part: feature:6134-6152:-1:exon

position:8218:-1
position: 8218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7958-8218:-1:exon

position:7958:-1
position: 7958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7204-7317:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6241-6279:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6134-6152:-1:exon

LOC104914254
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914254
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 11952..16139
location: region:11952-16139:1
so has part: feature:11952-16139:1:exon
subclass of: SO_0000011

104914254
type: Gene
SIO_000068: ncbigene

position:11952:1
position: 11952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16139:1
position: 16139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11952-16139:1:exon

LOC104914254
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC104914254
product: uncharacterized LOC104914254, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_004161960.1
SIO_010081: LOC104914254
subclass of: SO_0000673
so part of: LOC104914254
location: join(11952..12137,12229..12303,14455..14671,14815..16139)
location: region:11952-16139:1
so has part: feature:11952-12137:1:exon
so has part: feature:12229-12303:1:exon
so has part: feature:14455-14671:1:exon
so has part: feature:14815-16139:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11952-12137:1:exon

position:12137:1
position: 12137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:12229-12303:1:exon

position:12229:1
position: 12229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12303:1
position: 12303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:14455-14671:1:exon

position:14455:1
position: 14455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14671:1
position: 14671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:14815-16139:1:exon

position:14815:1
position: 14815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC104914254
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC104914254
product: uncharacterized LOC104914254, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XR_004161958.1
SIO_010081: LOC104914254
subclass of: SO_0000673
so part of: LOC104914254
location: join(11952..12137,12229..12303,14455..14671,14818..16139)
location: region:11952-16139:1
so has part: feature:11952-12137:1:exon
so has part: feature:12229-12303:1:exon
so has part: feature:14455-14671:1:exon
so has part: feature:14818-16139:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11952-12137:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:12229-12303:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14455-14671:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14818-16139:1:exon

position:14818:1
position: 14818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC104914254
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC104914254
product: uncharacterized LOC104914254, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XR_004161959.1
SIO_010081: LOC104914254
subclass of: SO_0000673
so part of: LOC104914254
location: join(11952..12137,12229..12303,14455..14671,15853..16139)
location: region:11952-16139:1
so has part: feature:11952-12137:1:exon
so has part: feature:12229-12303:1:exon
so has part: feature:14455-14671:1:exon
so has part: feature:15853-16139:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11952-12137:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:12229-12303:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14455-14671:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:15853-16139:1:exon

position:15853:1
position: 15853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC104914255
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914255
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 25750..30542
location: region:25750-30542:1
so has part: feature:25750-30542:1:exon
subclass of: SO_0000011

104914255
type: Gene
SIO_000068: ncbigene

position:25750:1
position: 25750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30542:1
position: 30542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25750-30542:1:exon

LOC104914255
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC104914255
product: uncharacterized LOC104914255
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 113 samples with support for all annotated introns
transcript id: XR_795923.3
SIO_010081: LOC104914255
subclass of: SO_0000673
so part of: LOC104914255
location: join(25750..25808,30105..30237,30423..30542)
location: region:25750-30542:1
so has part: feature:25750-25808:1:exon
so has part: feature:30105-30237:1:exon
so has part: feature:30423-30542:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25750-25808:1:exon

position:25808:1
position: 25808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:30105-30237:1:exon

position:30105:1
position: 30105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30237:1
position: 30237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:30423-30542:1:exon

position:30423:1
position: 30423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PIGV
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: PIGV
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(30966..57917)
location: region:30966-57917:-1
so has part: feature:30966-57917:-1:exon
subclass of: SO_0000010

100541997
type: Gene
SIO_000068: ncbigene

position:30966:-1
position: 30966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57917:-1
position: 57917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30966-57917:-1:exon

PIGV
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9103
gene: PIGV
product: phosphatidylinositol glycan anchor biosynthesis class V, transcript variant X10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
transcript id: XR_795922.3
SIO_010081: PIGV
so part of: PIGV
location: complement(join(30966..31084,46858..46967,47052..47197,48432..48747,49671..49768,53633..54784,55909..57906))
location: region:30966-57906:-1
so has part: feature:55909-57906:-1:exon
so has part: feature:53633-54784:-1:exon
so has part: feature:49671-49768:-1:exon
so has part: feature:48432-48747:-1:exon
so has part: feature:47052-47197:-1:exon
so has part: feature:46858-46967:-1:exon
so has part: feature:30966-31084:-1:exon

position:57906:-1
position: 57906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55909-57906:-1:exon

position:55909:-1
position: 55909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:53633-54784:-1:exon

position:53633:-1
position: 53633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54784:-1
position: 54784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:49671-49768:-1:exon

position:49671:-1
position: 49671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:49768:-1
position: 49768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:48432-48747:-1:exon

position:48432:-1
position: 48432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48747:-1
position: 48747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:47052-47197:-1:exon

position:47052:-1
position: 47052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47197:-1
position: 47197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:46858-46967:-1:exon

position:46858:-1
position: 46858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:46967:-1
position: 46967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:30966-31084:-1:exon

position:31084:-1
position: 31084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PIGV
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9103
gene: PIGV
product: phosphatidylinositol glycan anchor biosynthesis class V, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 74 samples with support for all annotated introns
transcript id: XR_795919.3
SIO_010081: PIGV
so part of: PIGV
location: complement(join(37158..38921,46858..46967,47052..47197,48432..48747,49671..49768,53633..54784,55909..57906))
location: region:37158-57906:-1
so has part: feature:55909-57906:-1:exon
so has part: feature:53633-54784:-1:exon
so has part: feature:49671-49768:-1:exon
so has part: feature:48432-48747:-1:exon
so has part: feature:47052-47197:-1:exon
so has part: feature:46858-46967:-1:exon
so has part: feature:37158-38921:-1:exon

position:37158:-1
position: 37158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55909-57906:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:53633-54784:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:49671-49768:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:48432-48747:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:47052-47197:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:46858-46967:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:37158-38921:-1:exon

position:38921:-1
position: 38921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PIGV
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9103
gene: PIGV
product: phosphatidylinositol glycan anchor biosynthesis class V, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_002121504.2
SIO_010081: PIGV
so part of: PIGV
location: complement(join(37158..38921,44849..45005,46858..46967,47052..47197,48432..48747,49671..49768,53633..54784,55909..57906))
location: region:37158-57906:-1
so has part: feature:55909-57906:-1:exon
so has part: feature:53633-54784:-1:exon
so has part: feature:49671-49768:-1:exon
so has part: feature:48432-48747:-1:exon
so has part: feature:47052-47197:-1:exon
so has part: feature:46858-46967:-1:exon
so has part: feature:44849-45005:-1:exon
so has part: feature:37158-38921:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:55909-57906:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:53633-54784:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:49671-49768:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:48432-48747:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:47052-47197:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:46858-46967:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:44849-45005:-1:exon

position:44849:-1
position: 44849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45005:-1
position: 45005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:37158-38921:-1:exon

PIGV
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9103
gene: PIGV
product: phosphatidylinositol glycan anchor biosynthesis class V, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XR_002121503.2
SIO_010081: PIGV
so part of: PIGV
location: complement(join(37158..38921,45469..45578,46858..46967,47052..47197,48432..48747,49671..49768,53633..54784,55909..57906))
location: region:37158-57906:-1
so has part: feature:55909-57906:-1:exon
so has part: feature:53633-54784:-1:exon
so has part: feature:49671-49768:-1:exon
so has part: feature:48432-48747:-1:exon
so has part: feature:47052-47197:-1:exon
so has part: feature:46858-46967:-1:exon
so has part: feature:45469-45578:-1:exon
so has part: feature:37158-38921:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:55909-57906:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:53633-54784:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:49671-49768:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:48432-48747:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:47052-47197:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:46858-46967:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:45469-45578:-1:exon

position:45469:-1
position: 45469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45578:-1
position: 45578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:37158-38921:-1:exon

PIGV
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9103
gene: PIGV
product: phosphatidylinositol glycan anchor biosynthesis class V, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_002121502.2
SIO_010081: PIGV
so part of: PIGV
location: complement(join(37158..38921,44849..45005,45469..45578,46858..46967,47052..47197,48432..48747,49671..49768,53633..54784,55909..57906))
location: region:37158-57906:-1
so has part: feature:55909-57906:-1:exon
so has part: feature:53633-54784:-1:exon
so has part: feature:49671-49768:-1:exon
so has part: feature:48432-48747:-1:exon
so has part: feature:47052-47197:-1:exon
so has part: feature:46858-46967:-1:exon
so has part: feature:45469-45578:-1:exon
so has part: feature:44849-45005:-1:exon
so has part: feature:37158-38921:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:55909-57906:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:53633-54784:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:49671-49768:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:48432-48747:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:47052-47197:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:46858-46967:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:45469-45578:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:44849-45005:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:37158-38921:-1:exon

PIGV
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9103
gene: PIGV
product: phosphatidylinositol glycan anchor biosynthesis class V, transcript variant X11
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XR_002121505.2
SIO_010081: PIGV
so part of: PIGV
location: complement(join(39853..40938,46858..46967,47052..47197,48432..48747,49671..49768,53633..54784,55909..57906))
location: region:39853-57906:-1
so has part: feature:55909-57906:-1:exon
so has part: feature:53633-54784:-1:exon
so has part: feature:49671-49768:-1:exon
so has part: feature:48432-48747:-1:exon
so has part: feature:47052-47197:-1:exon
so has part: feature:46858-46967:-1:exon
so has part: feature:39853-40938:-1:exon

position:39853:-1
position: 39853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55909-57906:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:53633-54784:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:49671-49768:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:48432-48747:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:47052-47197:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:46858-46967:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:39853-40938:-1:exon

position:40938:-1
position: 40938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PIGV
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9103
gene: PIGV
product: phosphatidylinositol glycan anchor biosynthesis class V, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
transcript id: XR_795921.3
SIO_010081: PIGV
so part of: PIGV
location: complement(join(45012..45246,46858..46967,47052..47197,48432..48747,49671..49768,53633..54784,55909..57906))
location: region:45012-57906:-1
so has part: feature:55909-57906:-1:exon
so has part: feature:53633-54784:-1:exon
so has part: feature:49671-49768:-1:exon
so has part: feature:48432-48747:-1:exon
so has part: feature:47052-47197:-1:exon
so has part: feature:46858-46967:-1:exon
so has part: feature:45012-45246:-1:exon

position:45012:-1
position: 45012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55909-57906:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:53633-54784:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:49671-49768:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:48432-48747:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:47052-47197:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:46858-46967:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:45012-45246:-1:exon

position:45246:-1
position: 45246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PIGV
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9103
gene: PIGV
product: phosphatidylinositol glycan anchor biosynthesis class V, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 52 samples with support for all annotated introns
transcript id: XR_795920.3
SIO_010081: PIGV
so part of: PIGV
location: complement(join(45012..45246,45469..45575,46858..46967,47052..47197,48432..48747,49671..49768,53633..54784,55909..57906))
location: region:45012-57906:-1
so has part: feature:55909-57906:-1:exon
so has part: feature:53633-54784:-1:exon
so has part: feature:49671-49768:-1:exon
so has part: feature:48432-48747:-1:exon
so has part: feature:47052-47197:-1:exon
so has part: feature:46858-46967:-1:exon
so has part: feature:45469-45575:-1:exon
so has part: feature:45012-45246:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:55909-57906:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:53633-54784:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:49671-49768:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:48432-48747:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:47052-47197:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:46858-46967:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:45469-45575:-1:exon

position:45575:-1
position: 45575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:45012-45246:-1:exon

PIGV
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9103
gene: PIGV
product: phosphatidylinositol glycan anchor biosynthesis class V, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 69 samples with support for all annotated introns
transcript id: XR_795918.3
SIO_010081: PIGV
so part of: PIGV
location: complement(join(45012..45246,45469..45578,46858..46967,47052..47197,48432..48747,49671..49768,53633..54784,55909..57906))
location: region:45012-57906:-1
so has part: feature:55909-57906:-1:exon
so has part: feature:53633-54784:-1:exon
so has part: feature:49671-49768:-1:exon
so has part: feature:48432-48747:-1:exon
so has part: feature:47052-47197:-1:exon
so has part: feature:46858-46967:-1:exon
so has part: feature:45469-45578:-1:exon
so has part: feature:45012-45246:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:55909-57906:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:53633-54784:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:49671-49768:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:48432-48747:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:47052-47197:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:46858-46967:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:45469-45578:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:45012-45246:-1:exon

PIGV
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: PIGV
product: phosphatidylinositol glycan anchor biosynthesis class V, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns
transcript id: XM_010723217.3
SIO_010081: PIGV
subclass of: SO_0000673
so part of: PIGV
location: complement(join(52368..52880,53633..54784,55909..56058,57350..57913))
location: region:52368-57913:-1
so has part: feature:57350-57913:-1:exon
so has part: feature:55909-56058:-1:exon
so has part: feature:53633-54784:-1:exon
so has part: feature:52368-52880:-1:exon

position:52368:-1
position: 52368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57913:-1
position: 57913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57350-57913:-1:exon

position:57350:-1
position: 57350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:55909-56058:-1:exon

position:56058:-1
position: 56058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:53633-54784:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:52368-52880:-1:exon

position:52880:-1
position: 52880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PIGV
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: PIGV
product: phosphatidylinositol glycan anchor biosynthesis class V, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 213 samples with support for all annotated introns
transcript id: XM_010723216.3
SIO_010081: PIGV
subclass of: SO_0000673
so part of: PIGV
location: complement(join(52368..52880,53633..54784,55909..57913))
location: region:52368-57913:-1
so has part: feature:55909-57913:-1:exon
so has part: feature:53633-54784:-1:exon
so has part: feature:52368-52880:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:55909-57913:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:53633-54784:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:52368-52880:-1:exon

PIGV
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: PIGV
product: phosphatidylinositol glycan anchor biosynthesis class V, transcript variant X14
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 101 samples with support for all annotated introns
transcript id: XM_010723220.3
SIO_010081: PIGV
subclass of: SO_0000673
so part of: PIGV
location: complement(join(52368..52880,53633..53816,54624..54784,55909..57912))
location: region:52368-57912:-1
so has part: feature:55909-57912:-1:exon
so has part: feature:54624-54784:-1:exon
so has part: feature:53633-53816:-1:exon
so has part: feature:52368-52880:-1:exon

position:57912:-1
position: 57912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55909-57912:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:54624-54784:-1:exon

position:54624:-1
position: 54624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:53633-53816:-1:exon

position:53816:-1
position: 53816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:52368-52880:-1:exon

PIGV
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: PIGV
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GPI mannosyltransferase 2 isoform X4
translation: MELASTQDPYLRVVVHTAVCCRALTLLLQAVFDLLIPDHTADAFSPPRLPEPGEYDLLLERLLGGLAHWDAEHFLFIAEWGYLSWAAWTFIIANPRHCLTLGLERRKKKREGKPRAGFCCPAVFVYVVHATALLVLGFFCMHVQVLTRFLGSSSPVLYWFSAHLLQGHEAWLWEEGAGGQSAVPVRERCALGAAPGSCGKGPAGGHPLLRLLLSYRSMTAVGRCLLGFFASYWLLGLVLHCNRLPWT
SIO_010081: PIGV
subclass of: SO_0000673
so part of: PIGV
location: complement(join(52569..52880,53633..53816,54624..54784,55909..55995))
location: region:52569-55995:-1
so has part: feature:55909-55995:-1:exon
so has part: feature:54624-54784:-1:exon
so has part: feature:53633-53816:-1:exon
so has part: feature:52569-52880:-1:exon

XP_010721522.1
type: Protein
SIO_000068: ncbiprotein

position:52569:-1
position: 52569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:55995:-1
position: 55995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55909-55995:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:54624-54784:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:53633-53816:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:52569-52880:-1:exon

PIGV
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: PIGV
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GPI mannosyltransferase 2 isoform X1
translation: MELASTQDPYLRVVVHTAVCCRALTLLLQAVFDLLIPDHTADAFSPPRLPEPGEYDLLLERLLGGLAHWDAEHFLFIAEWGYLYEHNCAFFPLYPLSLRAVADSALWPLRQLLCLWSRLLLSAVLLNSVFSVLAAAALYKLGCAVLRCRRTAFLAALLFCISPANVFMAAAYSESMFAFLAFSAMWQLEKGQSWLSMLLFSLATGVRANGLVNAGFFLYSRSKSFALQLQVGSGSVRRLALLWRQLLSVAFSILTTCAGICLPFALFQYYAYMRFCSPGLELAVPEPLRQLALDKGYRLVSPHGVKPPWCSQRFPVVYSYIQDVYWNVGFLRYFELRQVPNFLLALPVSLLSSWAAWTFIIANPRHCLTLGLERRKKKREGKPRAGFCCPAVFVYVVHATALLVLGFFCMHVQVLTRFLGSSSPVLYWFSAHLLQGHEAWLWEEGAGGQSAVPVRERCALGAAPGSCGKGPAGGHPLLRLLLSYRSMTAVGRCLLGFFASYWLLGLVLHCNRLPWT
SIO_010081: PIGV
subclass of: SO_0000673
so part of: PIGV
location: complement(join(52569..52880,53633..54784,55909..55995))
location: region:52569-55995:-1
so has part: feature:55909-55995:-1:exon
so has part: feature:53633-54784:-1:exon
so has part: feature:52569-52880:-1:exon

XP_010721518.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:55909-55995:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:53633-54784:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:52569-52880:-1:exon

PIGV
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: PIGV
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GPI mannosyltransferase 2 isoform X1
translation: MELASTQDPYLRVVVHTAVCCRALTLLLQAVFDLLIPDHTADAFSPPRLPEPGEYDLLLERLLGGLAHWDAEHFLFIAEWGYLYEHNCAFFPLYPLSLRAVADSALWPLRQLLCLWSRLLLSAVLLNSVFSVLAAAALYKLGCAVLRCRRTAFLAALLFCISPANVFMAAAYSESMFAFLAFSAMWQLEKGQSWLSMLLFSLATGVRANGLVNAGFFLYSRSKSFALQLQVGSGSVRRLALLWRQLLSVAFSILTTCAGICLPFALFQYYAYMRFCSPGLELAVPEPLRQLALDKGYRLVSPHGVKPPWCSQRFPVVYSYIQDVYWNVGFLRYFELRQVPNFLLALPVSLLSSWAAWTFIIANPRHCLTLGLERRKKKREGKPRAGFCCPAVFVYVVHATALLVLGFFCMHVQVLTRFLGSSSPVLYWFSAHLLQGHEAWLWEEGAGGQSAVPVRERCALGAAPGSCGKGPAGGHPLLRLLLSYRSMTAVGRCLLGFFASYWLLGLVLHCNRLPWT
SIO_010081: PIGV
subclass of: SO_0000673
so part of: PIGV
location: complement(join(52569..52880,53633..54784,55909..55995))
location: region:52569-55995:-1
so has part: feature:55909-55995:-1:exon
so has part: feature:53633-54784:-1:exon
so has part: feature:52569-52880:-1:exon

XP_010721519.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:55909-55995:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:53633-54784:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:52569-52880:-1:exon

PIGV
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: PIGV
product: phosphatidylinositol glycan anchor biosynthesis class V, transcript variant X12
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XM_019622753.2
SIO_010081: PIGV
subclass of: SO_0000673
so part of: PIGV
location: complement(join(52906..53169,53633..54784,55909..57917))
location: region:52906-57917:-1
so has part: feature:55909-57917:-1:exon
so has part: feature:53633-54784:-1:exon
so has part: feature:52906-53169:-1:exon

position:52906:-1
position: 52906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55909-57917:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:53633-54784:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:52906-53169:-1:exon

position:53169:-1
position: 53169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PIGV
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: PIGV
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GPI mannosyltransferase 2 isoform X2
translation: MELASTQDPYLRVVVHTAVCCRALTLLLQAVFDLLIPDHTADAFSPPRLPEPGEYDLLLERLLGGLAHWDAEHFLFIAEWGYLYEHNCAFFPLYPLSLRAVADSALWPLRQLLCLWSRLLLSAVLLNSVFSVLAAAALYKLGCAVLRCRRTAFLAALLFCISPANVFMAAAYSESMFAFLAFSAMWQLEKGQSWLSMLLFSLATGVRANGLVNAGFFLYSRSKSFALQLQVGSGSVRRLALLWRQLLSVAFSILTTCAGICLPFALFQYYAYMRFCSPGLELAVPEPLRQLALDKGYRLVSPHGVKPPWCSQRFPVVYSYIQDVYWNVGFLRYFELRQVPNFLLALPVSLLSSWAAWTFIIANPRHCLTLGLERRKKKREGKPRAGFCCPAVFVYVVHATALLVLGFFCMHVQLLSEFPDGTVTRTAVAVTAFAQSPRSPWPRAETP
SIO_010081: PIGV
subclass of: SO_0000673
so part of: PIGV
location: complement(join(53065..53169,53633..54784,55909..55995))
location: region:53065-55995:-1
so has part: feature:55909-55995:-1:exon
so has part: feature:53633-54784:-1:exon
so has part: feature:53065-53169:-1:exon

XP_019478298.1
type: Protein
SIO_000068: ncbiprotein

position:53065:-1
position: 53065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55909-55995:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:53633-54784:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:53065-53169:-1:exon

PIGV
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: PIGV
product: phosphatidylinositol glycan anchor biosynthesis class V, transcript variant X13
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 82 samples with support for all annotated introns
transcript id: XM_010723219.2
SIO_010081: PIGV
subclass of: SO_0000673
so part of: PIGV
location: complement(join(53176..53467,53633..54784,55909..57917))
location: region:53176-57917:-1
so has part: feature:55909-57917:-1:exon
so has part: feature:53633-54784:-1:exon
so has part: feature:53176-53467:-1:exon

position:53176:-1
position: 53176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55909-57917:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:53633-54784:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:53176-53467:-1:exon

position:53467:-1
position: 53467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PIGV
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: PIGV
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GPI mannosyltransferase 2 isoform X3
translation: MELASTQDPYLRVVVHTAVCCRALTLLLQAVFDLLIPDHTADAFSPPRLPEPGEYDLLLERLLGGLAHWDAEHFLFIAEWGYLYEHNCAFFPLYPLSLRAVADSALWPLRQLLCLWSRLLLSAVLLNSVFSVLAAAALYKLGCAVLRCRRTAFLAALLFCISPANVFMAAAYSESMFAFLAFSAMWQLEKGQSWLSMLLFSLATGVRANGLVNAGFFLYSRSKSFALQLQVGSGSVRRLALLWRQLLSVAFSILTTCAGICLPFALFQYYAYMRFCSPGLELAVPEPLRQLALDKGYRLVSPHGVKPPWCSQRFPVVYSYIQDVYWNVGFLRYFELRQVPNFLLALPVSLLSSWAAWTFIIANPRHCLTLGLERRKKKREGKPRAGFCCPAVFVYVVHATALLVLGFFCMHVQLYKASSLWRVPRDSARRSLWFDGWD
SIO_010081: PIGV
subclass of: SO_0000673
so part of: PIGV
location: complement(join(53390..53467,53633..54784,55909..55995))
location: region:53390-55995:-1
so has part: feature:55909-55995:-1:exon
so has part: feature:53633-54784:-1:exon
so has part: feature:53390-53467:-1:exon

XP_010721521.1
type: Protein
SIO_000068: ncbiprotein

position:53390:-1
position: 53390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55909-55995:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:53633-54784:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:53390-53467:-1:exon

ARID1A
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: ARID1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(59492..95365)
location: region:59492-95365:-1
so has part: feature:59492-95365:-1:exon
subclass of: SO_0000010

100541846
type: Gene
SIO_000068: ncbigene

position:59492:-1
position: 59492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:95365:-1
position: 95365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59492-95365:-1:exon

ARID1A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: ARID1A
product: AT-rich interaction domain 1A
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 215 samples with support for all annotated introns
transcript id: XM_010723221.3
SIO_010081: ARID1A
subclass of: SO_0000673
so part of: ARID1A
location: complement(join(59492..62446,63267..63397,63695..64568,66076..66172,66276..66407,66559..66709,66871..67043,67391..67523,71309..71516,72055..72264,73101..73210,73295..73440,74519..74834,75449..75616,76315..76404,76795..77035,92703..92816,93991..94464,95129..95365))
location: region:59492-95365:-1
so has part: feature:95129-95365:-1:exon
so has part: feature:93991-94464:-1:exon
so has part: feature:92703-92816:-1:exon
so has part: feature:76795-77035:-1:exon
so has part: feature:76315-76404:-1:exon
so has part: feature:75449-75616:-1:exon
so has part: feature:74519-74834:-1:exon
so has part: feature:73295-73440:-1:exon
so has part: feature:73101-73210:-1:exon
so has part: feature:72055-72264:-1:exon
so has part: feature:71309-71516:-1:exon
so has part: feature:67391-67523:-1:exon
so has part: feature:66871-67043:-1:exon
so has part: feature:66559-66709:-1:exon
so has part: feature:66276-66407:-1:exon
so has part: feature:66076-66172:-1:exon
so has part: feature:63695-64568:-1:exon
so has part: feature:63267-63397:-1:exon
so has part: feature:59492-62446:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:95129-95365:-1:exon

position:95129:-1
position: 95129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:93991-94464:-1:exon

position:93991:-1
position: 93991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:94464:-1
position: 94464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:92703-92816:-1:exon

position:92703:-1
position: 92703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:92816:-1
position: 92816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:76795-77035:-1:exon

position:76795:-1
position: 76795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77035:-1
position: 77035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:76315-76404:-1:exon

position:76315:-1
position: 76315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:76404:-1
position: 76404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:75449-75616:-1:exon

position:75449:-1
position: 75449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:75616:-1
position: 75616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:74519-74834:-1:exon

position:74519:-1
position: 74519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:74834:-1
position: 74834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:73295-73440:-1:exon

position:73295:-1
position: 73295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:73440:-1
position: 73440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:73101-73210:-1:exon

position:73101:-1
position: 73101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:73210:-1
position: 73210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:72055-72264:-1:exon

position:72055:-1
position: 72055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:72264:-1
position: 72264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:71309-71516:-1:exon

position:71309:-1
position: 71309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:71516:-1
position: 71516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:67391-67523:-1:exon

position:67391:-1
position: 67391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:67523:-1
position: 67523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:66871-67043:-1:exon

position:66871:-1
position: 66871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:67043:-1
position: 67043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:66559-66709:-1:exon

position:66559:-1
position: 66559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:66709:-1
position: 66709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:66276-66407:-1:exon

position:66276:-1
position: 66276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:66407:-1
position: 66407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:66076-66172:-1:exon

position:66076:-1
position: 66076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:66172:-1
position: 66172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:63695-64568:-1:exon

position:63695:-1
position: 63695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:64568:-1
position: 64568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:63267-63397:-1:exon

position:63267:-1
position: 63267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:63397:-1
position: 63397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:59492-62446:-1:exon

position:62446:-1
position: 62446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ARID1A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: ARID1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: AT-rich interactive domain-containing protein 1A
translation: MDQMGKMRPQPYGGNNPYTQQQGPQAGPQQGHGYPGQPYGPQTPQRYPMGMQSRTQSTMGSISYAQQIPPYGQQGPSAYGQQSQTPYYNQQSPHPQQQQPPYSQQTPSQTPHSQPSYQQQQQPQSQAPQLQTSQPAYSQQQSQPPHQQSPTPYPQQQSTAQQHQQNQPPYSQQQSQSPYQQQQQQQQQTQQTASSALSQQSSSYPQSQPQQQQPAYSQQRFPPPQELSQESFGSQTSSAPSMASSKGQEDMNLNLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYLQRNPQMPQYSSPQPGSALSPRQSSGGQMHAGMGPYQQNSMGSYGPQAGQYGPQGGYPRQPNYNALSNANYPSPGMGGSMNPMAAGSQMHGQTGVPPYSGLPPGRMSHAAMGNRPYGPNMANMPPQVGTGMCPPPGSMNRKAQEAAAAAMHAAANSIQNRPPGYPNMNQGGMMGTGPPYGQGINSMAGMINPQGPPYPMGGNMANNSAGMAASPEMMGLADVKLTPATKMNNKADGTPKAESKSKKSSSSTTTNEKITKLYELGGEPERKIWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYISVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQTKIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQMPPLPGIRSNSVGLQDAFTDGSDPTFQKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYSSMRKAPGSDPFMSSGQGPNSGMGDPYNRAAGPGMGNMAMGQRPHYPYGGPYDRVRTEPGMGPEGNLAAGTPQPNIMPSTSESGMYSPSRYPQQQQQQQRHDSYGNQFSTQGTSSGSPFPSQQTTMYQQQQQNYKRPMDGSYGPPAKRHEGEMYNVPYSAGQGQTQQQLPPAQTQQPSQQQAAQPSPQQDLYNQYGSTYPAADRRSAGGPQNQFPFQFGRDRVSAPPGSNAQQNMPPQMMGGPIQSAPEGPQQGTMWQGRNEIGYSYPNRQSAGSAPQGPAYHGVTRTDDILHSEQRVNHEGPWPSHGNRQPPYGPSASVPPMTRPPQSNYQTPPSMQNHIPQVSSPAPLPRPLENRTSPSKSPFLHSGMKMQKAGPPIPASHIAPAAVQPPMIRRDITFPPGSVEATQPVLKQRRRLTAKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDPGQRTLLDPQRFCRSSASSHEEGEEDEELRSLNYEEEDDEEEEAAAFSSKDRASLECSEEKLVSKFDKLPIKIVQKNDLFVVDYSDKLGRVQEFESGLLHWRIGGGDTTEHIQTHFESKMELPMIHKRASYNSVSRKRTAAESNPSTREGEALPSDSSSEKRITATMDDMLSARPSSLSGEEEEAKASETEKESKFPFGISPAQSHRNIKILEDEPHSKDETPLCTIQDWQDSLAKRCICVSNIIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQGVSCNKVEWWWDCLEVLRENTLVTLANISGQLDLSPYPESICLPILDGLLHWAVCPSAEAQDPFPTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTLVRFLSDRKNPVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQAGLMHMQNAPFESTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLFLIGQS
SIO_010081: ARID1A
subclass of: SO_0000673
so part of: ARID1A
location: complement(join(60728..62446,63267..63397,63695..64568,66076..66172,66276..66407,66559..66709,66871..67043,67391..67523,71309..71516,72055..72264,73101..73210,73295..73440,74519..74834,75449..75616,76315..76404,76795..77035,92703..92816,93991..94464,95129..95329))
location: region:60728-95329:-1
so has part: feature:95129-95329:-1:exon
so has part: feature:93991-94464:-1:exon
so has part: feature:92703-92816:-1:exon
so has part: feature:76795-77035:-1:exon
so has part: feature:76315-76404:-1:exon
so has part: feature:75449-75616:-1:exon
so has part: feature:74519-74834:-1:exon
so has part: feature:73295-73440:-1:exon
so has part: feature:73101-73210:-1:exon
so has part: feature:72055-72264:-1:exon
so has part: feature:71309-71516:-1:exon
so has part: feature:67391-67523:-1:exon
so has part: feature:66871-67043:-1:exon
so has part: feature:66559-66709:-1:exon
so has part: feature:66276-66407:-1:exon
so has part: feature:66076-66172:-1:exon
so has part: feature:63695-64568:-1:exon
so has part: feature:63267-63397:-1:exon
so has part: feature:60728-62446:-1:exon

XP_010721523.2
type: Protein
SIO_000068: ncbiprotein

position:60728:-1
position: 60728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:95329:-1
position: 95329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:95129-95329:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:93991-94464:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:92703-92816:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:76795-77035:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:76315-76404:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:75449-75616:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:74519-74834:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:73295-73440:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:73101-73210:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:72055-72264:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:71309-71516:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:67391-67523:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:66871-67043:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:66559-66709:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:66276-66407:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:66076-66172:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:63695-64568:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:63267-63397:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:60728-62446:-1:exon

RPS6KA1
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: RPS6KA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(146394..170798)
location: region:146394-170798:-1
so has part: feature:146394-170798:-1:exon
subclass of: SO_0000010

100541690
type: Gene
SIO_000068: ncbigene

position:146394:-1
position: 146394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:170798:-1
position: 170798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:146394-170798:-1:exon

RPS6KA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: RPS6KA1
product: ribosomal protein S6 kinase A1, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 197 samples with support for all annotated introns
transcript id: XM_031556780.1
SIO_010081: RPS6KA1
subclass of: SO_0000673
so part of: RPS6KA1
location: complement(join(146394..147537,148813..148950,149371..149488,149585..149661,150267..150428,150591..150749,150973..151062,152058..152183,152613..152740,152991..153093,153699..153763,153963..154051,154285..154355,154754..154896,155014..155051,155596..155702,155971..156050,156681..156761,156973..157054,157629..157745,161422..161475,170706..170797))
location: region:146394-170797:-1
so has part: feature:170706-170797:-1:exon
so has part: feature:161422-161475:-1:exon
so has part: feature:157629-157745:-1:exon
so has part: feature:156973-157054:-1:exon
so has part: feature:156681-156761:-1:exon
so has part: feature:155971-156050:-1:exon
so has part: feature:155596-155702:-1:exon
so has part: feature:155014-155051:-1:exon
so has part: feature:154754-154896:-1:exon
so has part: feature:154285-154355:-1:exon
so has part: feature:153963-154051:-1:exon
so has part: feature:153699-153763:-1:exon
so has part: feature:152991-153093:-1:exon
so has part: feature:152613-152740:-1:exon
so has part: feature:152058-152183:-1:exon
so has part: feature:150973-151062:-1:exon
so has part: feature:150591-150749:-1:exon
so has part: feature:150267-150428:-1:exon
so has part: feature:149585-149661:-1:exon
so has part: feature:149371-149488:-1:exon
so has part: feature:148813-148950:-1:exon
so has part: feature:146394-147537:-1:exon

position:170797:-1
position: 170797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:170706-170797:-1:exon

position:170706:-1
position: 170706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:161422-161475:-1:exon

position:161422:-1
position: 161422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:161475:-1
position: 161475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:157629-157745:-1:exon

position:157629:-1
position: 157629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:157745:-1
position: 157745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:156973-157054:-1:exon

position:156973:-1
position: 156973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:157054:-1
position: 157054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:156681-156761:-1:exon

position:156681:-1
position: 156681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:156761:-1
position: 156761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:155971-156050:-1:exon

position:155971:-1
position: 155971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:156050:-1
position: 156050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:155596-155702:-1:exon

position:155596:-1
position: 155596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:155702:-1
position: 155702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:155014-155051:-1:exon

position:155014:-1
position: 155014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:155051:-1
position: 155051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:154754-154896:-1:exon

position:154754:-1
position: 154754
reference: sequence
type: ReverseStrandPosition
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position:154896:-1
position: 154896
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 10
SIO_000628: feature:154285-154355:-1:exon

position:154285:-1
position: 154285
reference: sequence
type: ReverseStrandPosition
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position:154355:-1
position: 154355
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 11
SIO_000628: feature:153963-154051:-1:exon

position:153963:-1
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reference: sequence
type: ReverseStrandPosition
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position:154051:-1
position: 154051
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 12
SIO_000628: feature:153699-153763:-1:exon

position:153699:-1
position: 153699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:153763:-1
position: 153763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:152991-153093:-1:exon

position:152991:-1
position: 152991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:153093:-1
position: 153093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:152613-152740:-1:exon

position:152613:-1
position: 152613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:152740:-1
position: 152740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:152058-152183:-1:exon

position:152058:-1
position: 152058
reference: sequence
type: ReverseStrandPosition
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position:152183:-1
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reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 16
SIO_000628: feature:150973-151062:-1:exon

position:150973:-1
position: 150973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:151062:-1
position: 151062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:150591-150749:-1:exon

position:150591:-1
position: 150591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:150749:-1
position: 150749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:150267-150428:-1:exon

position:150267:-1
position: 150267
reference: sequence
type: ReverseStrandPosition
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position:150428:-1
position: 150428
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 19
SIO_000628: feature:149585-149661:-1:exon

position:149585:-1
position: 149585
reference: sequence
type: ReverseStrandPosition
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position:149661:-1
position: 149661
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 20
SIO_000628: feature:149371-149488:-1:exon

position:149371:-1
position: 149371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:149488:-1
position: 149488
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 21
SIO_000628: feature:148813-148950:-1:exon

position:148813:-1
position: 148813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:148950:-1
position: 148950
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 22
SIO_000628: feature:146394-147537:-1:exon

position:147537:-1
position: 147537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RPS6KA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: RPS6KA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ribosomal protein S6 kinase alpha-1 isoform X5
translation: MGSLPLQNGQAAPEEGGNPPCKVKSDITWVEKDLVDSADKGEGVVKEINITHHVKEGSEKADPSQFELLKVLGQGSFGKVFLVRKITPPDSNHLYAMKVLKKATLKVRDRVRTKIERDILADVNHPFVVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKAYSFCGTVEYMAPEVVNRQGHSHSADWWSYGVLMFEMLTGSLPFQGKDRKETMTLILKAKLGMPQFLSAEAQSLLRALFKRNPANRLGSGPDGAEEIKRHPFYSTIDWNKLYRREIKPPFKPAVGQPDDTFYFDTEFTSRTPKDSPGIPPSAGAHQLFRGFSFVATGLMEDSKVKPAQPPLHSVVQQLHGKNIQFSDGYVVKEAIGVGSYSVCKRCIHKATNMEYAVKVIDKSKRDPSEEIEILLRYGQHPNIITLKDVYDDGKYVYLVTELMRGGELLDKILRQKFFSEREASSVLHTICKTVEYLHSQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGVLLYTMLAGCTPFANGPSDTPEEILTRIGGGKFSVNGGNWDTVSDMAKDLVSKMLHVDPHQRLTAKQVLQHPWITQKDSLPQSQLNHQDVQLVKGAMAATYSALNSSKPSPQLKPIESSILAQRRVKKLPSTTL
SIO_010081: RPS6KA1
subclass of: SO_0000673
so part of: RPS6KA1
location: complement(join(147415..147537,148813..148950,149371..149488,149585..149661,150267..150428,150591..150749,150973..151062,152058..152183,152613..152740,152991..153093,153699..153763,153963..154051,154285..154355,154754..154896,155014..155051,155596..155702,155971..156050,156681..156761,156973..157054,157629..157745,161422..161475,170706..170771))
location: region:147415-170771:-1
so has part: feature:170706-170771:-1:exon
so has part: feature:161422-161475:-1:exon
so has part: feature:157629-157745:-1:exon
so has part: feature:156973-157054:-1:exon
so has part: feature:156681-156761:-1:exon
so has part: feature:155971-156050:-1:exon
so has part: feature:155596-155702:-1:exon
so has part: feature:155014-155051:-1:exon
so has part: feature:154754-154896:-1:exon
so has part: feature:154285-154355:-1:exon
so has part: feature:153963-154051:-1:exon
so has part: feature:153699-153763:-1:exon
so has part: feature:152991-153093:-1:exon
so has part: feature:152613-152740:-1:exon
so has part: feature:152058-152183:-1:exon
so has part: feature:150973-151062:-1:exon
so has part: feature:150591-150749:-1:exon
so has part: feature:150267-150428:-1:exon
so has part: feature:149585-149661:-1:exon
so has part: feature:149371-149488:-1:exon
so has part: feature:148813-148950:-1:exon
so has part: feature:147415-147537:-1:exon

XP_031412640.1
type: Protein
SIO_000068: ncbiprotein

position:147415:-1
position: 147415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:170771:-1
position: 170771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:170706-170771:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:161422-161475:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:157629-157745:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:156973-157054:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:156681-156761:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:155971-156050:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:155596-155702:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:155014-155051:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:154754-154896:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:154285-154355:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:153963-154051:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:153699-153763:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:152991-153093:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:152613-152740:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:152058-152183:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:150973-151062:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:150591-150749:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:150267-150428:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:149585-149661:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:149371-149488:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:148813-148950:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:147415-147537:-1:exon

RPS6KA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: RPS6KA1
product: ribosomal protein S6 kinase A1, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 81 samples with support for all annotated introns
transcript id: XM_010723226.3
SIO_010081: RPS6KA1
subclass of: SO_0000673
so part of: RPS6KA1
location: complement(join(147553..148366,148813..148950,149371..149488,149585..149661,150267..150428,150591..150749,150973..151062,152058..152183,152613..152740,152991..153093,153699..153763,153963..154051,154285..154355,154754..154896,155014..155051,155596..155702,155971..156050,156681..156761,156973..157054,161422..161475,170706..170798))
location: region:147553-170798:-1
so has part: feature:170706-170798:-1:exon
so has part: feature:161422-161475:-1:exon
so has part: feature:156973-157054:-1:exon
so has part: feature:156681-156761:-1:exon
so has part: feature:155971-156050:-1:exon
so has part: feature:155596-155702:-1:exon
so has part: feature:155014-155051:-1:exon
so has part: feature:154754-154896:-1:exon
so has part: feature:154285-154355:-1:exon
so has part: feature:153963-154051:-1:exon
so has part: feature:153699-153763:-1:exon
so has part: feature:152991-153093:-1:exon
so has part: feature:152613-152740:-1:exon
so has part: feature:152058-152183:-1:exon
so has part: feature:150973-151062:-1:exon
so has part: feature:150591-150749:-1:exon
so has part: feature:150267-150428:-1:exon
so has part: feature:149585-149661:-1:exon
so has part: feature:149371-149488:-1:exon
so has part: feature:148813-148950:-1:exon
so has part: feature:147553-148366:-1:exon

position:147553:-1
position: 147553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:170706-170798:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:161422-161475:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:156973-157054:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:156681-156761:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:155971-156050:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:155596-155702:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:155014-155051:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:154754-154896:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:154285-154355:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:153963-154051:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:153699-153763:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:152991-153093:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:152613-152740:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:152058-152183:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:150973-151062:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:150591-150749:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:150267-150428:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:149585-149661:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:149371-149488:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:148813-148950:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:147553-148366:-1:exon

position:148366:-1
position: 148366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RPS6KA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: RPS6KA1
product: ribosomal protein S6 kinase A1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 128 samples with support for all annotated introns
transcript id: XM_003214166.4
SIO_010081: RPS6KA1
subclass of: SO_0000673
so part of: RPS6KA1
location: complement(join(147554..148366,148813..148950,149371..149488,149585..149661,150267..150428,150591..150749,150973..151062,152058..152183,152613..152740,152991..153093,153699..153763,153963..154051,154285..154355,154754..154896,155014..155051,155596..155702,155971..156050,156681..156761,156973..157054,157629..157745,161422..161475,170706..170798))
location: region:147554-170798:-1
so has part: feature:170706-170798:-1:exon
so has part: feature:161422-161475:-1:exon
so has part: feature:157629-157745:-1:exon
so has part: feature:156973-157054:-1:exon
so has part: feature:156681-156761:-1:exon
so has part: feature:155971-156050:-1:exon
so has part: feature:155596-155702:-1:exon
so has part: feature:155014-155051:-1:exon
so has part: feature:154754-154896:-1:exon
so has part: feature:154285-154355:-1:exon
so has part: feature:153963-154051:-1:exon
so has part: feature:153699-153763:-1:exon
so has part: feature:152991-153093:-1:exon
so has part: feature:152613-152740:-1:exon
so has part: feature:152058-152183:-1:exon
so has part: feature:150973-151062:-1:exon
so has part: feature:150591-150749:-1:exon
so has part: feature:150267-150428:-1:exon
so has part: feature:149585-149661:-1:exon
so has part: feature:149371-149488:-1:exon
so has part: feature:148813-148950:-1:exon
so has part: feature:147554-148366:-1:exon

position:147554:-1
position: 147554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:170706-170798:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:161422-161475:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:157629-157745:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:156973-157054:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:156681-156761:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:155971-156050:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:155596-155702:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:155014-155051:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:154754-154896:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:154285-154355:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:153963-154051:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:153699-153763:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:152991-153093:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:152613-152740:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:152058-152183:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:150973-151062:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:150591-150749:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:150267-150428:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:149585-149661:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:149371-149488:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:148813-148950:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:147554-148366:-1:exon

RPS6KA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: RPS6KA1
product: ribosomal protein S6 kinase A1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
transcript id: XM_010723224.3
SIO_010081: RPS6KA1
subclass of: SO_0000673
so part of: RPS6KA1
location: complement(join(147554..148366,148813..148950,149371..149488,149585..149661,150267..150428,150591..150749,150973..151062,152058..152183,152613..152740,152991..153093,153699..153763,153963..154051,154285..154355,154754..154896,155014..155051,155596..155702,155971..156050,156681..156761,156973..157054,157629..157745,161422..161475,166873..166926))
location: region:147554-166926:-1
so has part: feature:166873-166926:-1:exon
so has part: feature:161422-161475:-1:exon
so has part: feature:157629-157745:-1:exon
so has part: feature:156973-157054:-1:exon
so has part: feature:156681-156761:-1:exon
so has part: feature:155971-156050:-1:exon
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so has part: feature:155014-155051:-1:exon
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so has part: feature:153963-154051:-1:exon
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so has part: feature:152991-153093:-1:exon
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so has part: feature:152058-152183:-1:exon
so has part: feature:150973-151062:-1:exon
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so has part: feature:149371-149488:-1:exon
so has part: feature:148813-148950:-1:exon
so has part: feature:147554-148366:-1:exon

position:166926:-1
position: 166926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166873-166926:-1:exon

position:166873:-1
position: 166873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:161422-161475:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:157629-157745:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:156973-157054:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:156681-156761:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:155971-156050:-1:exon

urn:…
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SIO_000628: feature:155596-155702:-1:exon

urn:…
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urn:…
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SIO_000628: feature:154754-154896:-1:exon

urn:…
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SIO_000628: feature:154285-154355:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:153963-154051:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:153699-153763:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:152991-153093:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:152613-152740:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:152058-152183:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:150973-151062:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:150591-150749:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:150267-150428:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:149585-149661:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:149371-149488:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:148813-148950:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:147554-148366:-1:exon

RPS6KA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: RPS6KA1
product: ribosomal protein S6 kinase A1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 89 samples with support for all annotated introns
transcript id: XM_010723223.3
SIO_010081: RPS6KA1
subclass of: SO_0000673
so part of: RPS6KA1
location: complement(join(147554..148366,148813..148950,149371..149488,149585..149661,150267..150428,150591..150749,150973..151062,152058..152183,152613..152740,152991..153093,153699..153763,153963..154051,154285..154355,154754..154896,155014..155051,155596..155702,155971..156050,156681..156761,156973..157054,157629..157745,161422..161475,163215..163335))
location: region:147554-163335:-1
so has part: feature:163215-163335:-1:exon
so has part: feature:161422-161475:-1:exon
so has part: feature:157629-157745:-1:exon
so has part: feature:156973-157054:-1:exon
so has part: feature:156681-156761:-1:exon
so has part: feature:155971-156050:-1:exon
so has part: feature:155596-155702:-1:exon
so has part: feature:155014-155051:-1:exon
so has part: feature:154754-154896:-1:exon
so has part: feature:154285-154355:-1:exon
so has part: feature:153963-154051:-1:exon
so has part: feature:153699-153763:-1:exon
so has part: feature:152991-153093:-1:exon
so has part: feature:152613-152740:-1:exon
so has part: feature:152058-152183:-1:exon
so has part: feature:150973-151062:-1:exon
so has part: feature:150591-150749:-1:exon
so has part: feature:150267-150428:-1:exon
so has part: feature:149585-149661:-1:exon
so has part: feature:149371-149488:-1:exon
so has part: feature:148813-148950:-1:exon
so has part: feature:147554-148366:-1:exon

position:163335:-1
position: 163335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163215-163335:-1:exon

position:163215:-1
position: 163215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:161422-161475:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:157629-157745:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:156973-157054:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:156681-156761:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:155971-156050:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:155596-155702:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:155014-155051:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:154754-154896:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:154285-154355:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:153963-154051:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:153699-153763:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:152991-153093:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:152613-152740:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:152058-152183:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:150973-151062:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:150591-150749:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:150267-150428:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:149585-149661:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:149371-149488:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:148813-148950:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:147554-148366:-1:exon

RPS6KA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: RPS6KA1
product: ribosomal protein S6 kinase A1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 84 samples with support for all annotated introns
transcript id: XM_010723222.3
SIO_010081: RPS6KA1
subclass of: SO_0000673
so part of: RPS6KA1
location: complement(join(147554..148366,148813..148950,149371..149488,149585..149661,150267..150428,150591..150749,150973..151062,152058..152183,152613..152740,152991..153093,153699..153763,153963..154051,154285..154355,154754..154896,155014..155051,155596..155702,155971..156050,156681..156761,156973..157054,157629..157745,159558..159813))
location: region:147554-159813:-1
so has part: feature:159558-159813:-1:exon
so has part: feature:157629-157745:-1:exon
so has part: feature:156973-157054:-1:exon
so has part: feature:156681-156761:-1:exon
so has part: feature:155971-156050:-1:exon
so has part: feature:155596-155702:-1:exon
so has part: feature:155014-155051:-1:exon
so has part: feature:154754-154896:-1:exon
so has part: feature:154285-154355:-1:exon
so has part: feature:153963-154051:-1:exon
so has part: feature:153699-153763:-1:exon
so has part: feature:152991-153093:-1:exon
so has part: feature:152613-152740:-1:exon
so has part: feature:152058-152183:-1:exon
so has part: feature:150973-151062:-1:exon
so has part: feature:150591-150749:-1:exon
so has part: feature:150267-150428:-1:exon
so has part: feature:149585-149661:-1:exon
so has part: feature:149371-149488:-1:exon
so has part: feature:148813-148950:-1:exon
so has part: feature:147554-148366:-1:exon

position:159813:-1
position: 159813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:159558-159813:-1:exon

position:159558:-1
position: 159558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:157629-157745:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:156973-157054:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:156681-156761:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:155971-156050:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:155596-155702:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:155014-155051:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:154754-154896:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:154285-154355:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:153963-154051:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:153699-153763:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:152991-153093:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:152613-152740:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:152058-152183:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:150973-151062:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:150591-150749:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:150267-150428:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:149585-149661:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:149371-149488:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:148813-148950:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:147554-148366:-1:exon

RPS6KA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: RPS6KA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ribosomal protein S6 kinase alpha-1 isoform X6
translation: MGSLPLQNGQAAPEEGGNPPCKVKSDITWVEKDLVDSADKVFLVRKITPPDSNHLYAMKVLKKATLKVRDRVRTKIERDILADVNHPFVVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKAYSFCGTVEYMAPEVVNRQGHSHSADWWSYGVLMFEMLTGSLPFQGKDRKETMTLILKAKLGMPQFLSAEAQSLLRALFKRNPANRLGSGPDGAEEIKRHPFYSTIDWNKLYRREIKPPFKPAVGQPDDTFYFDTEFTSRTPKDSPGIPPSAGAHQLFRGFSFVATGLMEDSKVKPAQPPLHSVVQQLHGKNIQFSDGYVVKEAIGVGSYSVCKRCIHKATNMEYAVKVIDKSKRDPSEEIEILLRYGQHPNIITLKDVYDDGKYVYLVTELMRGGELLDKILRQKFFSEREASSVLHTICKTVEYLHSQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGVLLYTMLAGCTPFANGPSDTPEEILTRIGGGKFSVNGGNWDTVSDMAKDLVSKMLHVDPHQRLTAKQVLQHPWITQKDSLPQSQLNHQDVQLVKAWSSMAESCKEEKDLGVLFSQASTMSQRSAQVVKKANGILAVSAVVQPEGAGV
SIO_010081: RPS6KA1
subclass of: SO_0000673
so part of: RPS6KA1
location: complement(join(148205..148366,148813..148950,149371..149488,149585..149661,150267..150428,150591..150749,150973..151062,152058..152183,152613..152740,152991..153093,153699..153763,153963..154051,154285..154355,154754..154896,155014..155051,155596..155702,155971..156050,156681..156761,156973..157054,161422..161475,170706..170771))
location: region:148205-170771:-1
so has part: feature:170706-170771:-1:exon
so has part: feature:161422-161475:-1:exon
so has part: feature:156973-157054:-1:exon
so has part: feature:156681-156761:-1:exon
so has part: feature:155971-156050:-1:exon
so has part: feature:155596-155702:-1:exon
so has part: feature:155014-155051:-1:exon
so has part: feature:154754-154896:-1:exon
so has part: feature:154285-154355:-1:exon
so has part: feature:153963-154051:-1:exon
so has part: feature:153699-153763:-1:exon
so has part: feature:152991-153093:-1:exon
so has part: feature:152613-152740:-1:exon
so has part: feature:152058-152183:-1:exon
so has part: feature:150973-151062:-1:exon
so has part: feature:150591-150749:-1:exon
so has part: feature:150267-150428:-1:exon
so has part: feature:149585-149661:-1:exon
so has part: feature:149371-149488:-1:exon
so has part: feature:148813-148950:-1:exon
so has part: feature:148205-148366:-1:exon

XP_010721528.1
type: Protein
SIO_000068: ncbiprotein

position:148205:-1
position: 148205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:170706-170771:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:161422-161475:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:156973-157054:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:156681-156761:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:155971-156050:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:155596-155702:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:155014-155051:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:154754-154896:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:154285-154355:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:153963-154051:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:153699-153763:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:152991-153093:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:152613-152740:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:152058-152183:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:150973-151062:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:150591-150749:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:150267-150428:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:149585-149661:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:149371-149488:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:148813-148950:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:148205-148366:-1:exon

RPS6KA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: RPS6KA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ribosomal protein S6 kinase alpha-1 isoform X1
translation: MGSLPLQNGQAAPEEGGNPPCKVKSDITWVEKDLVDSADKGEGVVKEINITHHVKEGSEKADPSQFELLKVLGQGSFGKVFLVRKITPPDSNHLYAMKVLKKATLKVRDRVRTKIERDILADVNHPFVVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKAYSFCGTVEYMAPEVVNRQGHSHSADWWSYGVLMFEMLTGSLPFQGKDRKETMTLILKAKLGMPQFLSAEAQSLLRALFKRNPANRLGSGPDGAEEIKRHPFYSTIDWNKLYRREIKPPFKPAVGQPDDTFYFDTEFTSRTPKDSPGIPPSAGAHQLFRGFSFVATGLMEDSKVKPAQPPLHSVVQQLHGKNIQFSDGYVVKEAIGVGSYSVCKRCIHKATNMEYAVKVIDKSKRDPSEEIEILLRYGQHPNIITLKDVYDDGKYVYLVTELMRGGELLDKILRQKFFSEREASSVLHTICKTVEYLHSQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGVLLYTMLAGCTPFANGPSDTPEEILTRIGGGKFSVNGGNWDTVSDMAKDLVSKMLHVDPHQRLTAKQVLQHPWITQKDSLPQSQLNHQDVQLVKAWSSMAESCKEEKDLGVLFSQASTMSQRSAQVVKKANGILAVSAVVQPEGAGV
SIO_010081: RPS6KA1
subclass of: SO_0000673
so part of: RPS6KA1
location: complement(join(148205..148366,148813..148950,149371..149488,149585..149661,150267..150428,150591..150749,150973..151062,152058..152183,152613..152740,152991..153093,153699..153763,153963..154051,154285..154355,154754..154896,155014..155051,155596..155702,155971..156050,156681..156761,156973..157054,157629..157745,161422..161475,170706..170771))
location: region:148205-170771:-1
so has part: feature:170706-170771:-1:exon
so has part: feature:161422-161475:-1:exon
so has part: feature:157629-157745:-1:exon
so has part: feature:156973-157054:-1:exon
so has part: feature:156681-156761:-1:exon
so has part: feature:155971-156050:-1:exon
so has part: feature:155596-155702:-1:exon
so has part: feature:155014-155051:-1:exon
so has part: feature:154754-154896:-1:exon
so has part: feature:154285-154355:-1:exon
so has part: feature:153963-154051:-1:exon
so has part: feature:153699-153763:-1:exon
so has part: feature:152991-153093:-1:exon
so has part: feature:152613-152740:-1:exon
so has part: feature:152058-152183:-1:exon
so has part: feature:150973-151062:-1:exon
so has part: feature:150591-150749:-1:exon
so has part: feature:150267-150428:-1:exon
so has part: feature:149585-149661:-1:exon
so has part: feature:149371-149488:-1:exon
so has part: feature:148813-148950:-1:exon
so has part: feature:148205-148366:-1:exon

XP_003214214.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:170706-170771:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:161422-161475:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:157629-157745:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:156973-157054:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:156681-156761:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:155971-156050:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:155596-155702:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:155014-155051:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:154754-154896:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:154285-154355:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:153963-154051:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:153699-153763:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:152991-153093:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:152613-152740:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:152058-152183:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:150973-151062:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:150591-150749:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:150267-150428:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:149585-149661:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:149371-149488:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:148813-148950:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:148205-148366:-1:exon

RPS6KA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: RPS6KA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ribosomal protein S6 kinase alpha-1 isoform X4
translation: MSFVPCGKTPHLQVKSDITWVEKDLVDSADKGEGVVKEINITHHVKEGSEKADPSQFELLKVLGQGSFGKVFLVRKITPPDSNHLYAMKVLKKATLKVRDRVRTKIERDILADVNHPFVVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKAYSFCGTVEYMAPEVVNRQGHSHSADWWSYGVLMFEMLTGSLPFQGKDRKETMTLILKAKLGMPQFLSAEAQSLLRALFKRNPANRLGSGPDGAEEIKRHPFYSTIDWNKLYRREIKPPFKPAVGQPDDTFYFDTEFTSRTPKDSPGIPPSAGAHQLFRGFSFVATGLMEDSKVKPAQPPLHSVVQQLHGKNIQFSDGYVVKEAIGVGSYSVCKRCIHKATNMEYAVKVIDKSKRDPSEEIEILLRYGQHPNIITLKDVYDDGKYVYLVTELMRGGELLDKILRQKFFSEREASSVLHTICKTVEYLHSQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGVLLYTMLAGCTPFANGPSDTPEEILTRIGGGKFSVNGGNWDTVSDMAKDLVSKMLHVDPHQRLTAKQVLQHPWITQKDSLPQSQLNHQDVQLVKAWSSMAESCKEEKDLGVLFSQASTMSQRSAQVVKKANGILAVSAVVQPEGAGV
SIO_010081: RPS6KA1
subclass of: SO_0000673
so part of: RPS6KA1
location: complement(join(148205..148366,148813..148950,149371..149488,149585..149661,150267..150428,150591..150749,150973..151062,152058..152183,152613..152740,152991..153093,153699..153763,153963..154051,154285..154355,154754..154896,155014..155051,155596..155702,155971..156050,156681..156761,156973..157054,157629..157745,161422..161475,166873..166911))
location: region:148205-166911:-1
so has part: feature:166873-166911:-1:exon
so has part: feature:161422-161475:-1:exon
so has part: feature:157629-157745:-1:exon
so has part: feature:156973-157054:-1:exon
so has part: feature:156681-156761:-1:exon
so has part: feature:155971-156050:-1:exon
so has part: feature:155596-155702:-1:exon
so has part: feature:155014-155051:-1:exon
so has part: feature:154754-154896:-1:exon
so has part: feature:154285-154355:-1:exon
so has part: feature:153963-154051:-1:exon
so has part: feature:153699-153763:-1:exon
so has part: feature:152991-153093:-1:exon
so has part: feature:152613-152740:-1:exon
so has part: feature:152058-152183:-1:exon
so has part: feature:150973-151062:-1:exon
so has part: feature:150591-150749:-1:exon
so has part: feature:150267-150428:-1:exon
so has part: feature:149585-149661:-1:exon
so has part: feature:149371-149488:-1:exon
so has part: feature:148813-148950:-1:exon
so has part: feature:148205-148366:-1:exon

XP_010721526.1
type: Protein
SIO_000068: ncbiprotein

position:166911:-1
position: 166911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166873-166911:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:161422-161475:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:157629-157745:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:156973-157054:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:156681-156761:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:155971-156050:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:155596-155702:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:155014-155051:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:154754-154896:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:154285-154355:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:153963-154051:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:153699-153763:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:152991-153093:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:152613-152740:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:152058-152183:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:150973-151062:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:150591-150749:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:150267-150428:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:149585-149661:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:149371-149488:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:148813-148950:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:148205-148366:-1:exon

RPS6KA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: RPS6KA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ribosomal protein S6 kinase alpha-1 isoform X3
translation: MLRLLFRSKPRIQEVKSDITWVEKDLVDSADKGEGVVKEINITHHVKEGSEKADPSQFELLKVLGQGSFGKVFLVRKITPPDSNHLYAMKVLKKATLKVRDRVRTKIERDILADVNHPFVVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKAYSFCGTVEYMAPEVVNRQGHSHSADWWSYGVLMFEMLTGSLPFQGKDRKETMTLILKAKLGMPQFLSAEAQSLLRALFKRNPANRLGSGPDGAEEIKRHPFYSTIDWNKLYRREIKPPFKPAVGQPDDTFYFDTEFTSRTPKDSPGIPPSAGAHQLFRGFSFVATGLMEDSKVKPAQPPLHSVVQQLHGKNIQFSDGYVVKEAIGVGSYSVCKRCIHKATNMEYAVKVIDKSKRDPSEEIEILLRYGQHPNIITLKDVYDDGKYVYLVTELMRGGELLDKILRQKFFSEREASSVLHTICKTVEYLHSQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGVLLYTMLAGCTPFANGPSDTPEEILTRIGGGKFSVNGGNWDTVSDMAKDLVSKMLHVDPHQRLTAKQVLQHPWITQKDSLPQSQLNHQDVQLVKAWSSMAESCKEEKDLGVLFSQASTMSQRSAQVVKKANGILAVSAVVQPEGAGV
SIO_010081: RPS6KA1
subclass of: SO_0000673
so part of: RPS6KA1
location: complement(join(148205..148366,148813..148950,149371..149488,149585..149661,150267..150428,150591..150749,150973..151062,152058..152183,152613..152740,152991..153093,153699..153763,153963..154051,154285..154355,154754..154896,155014..155051,155596..155702,155971..156050,156681..156761,156973..157054,157629..157745,161422..161475,163215..163256))
location: region:148205-163256:-1
so has part: feature:163215-163256:-1:exon
so has part: feature:161422-161475:-1:exon
so has part: feature:157629-157745:-1:exon
so has part: feature:156973-157054:-1:exon
so has part: feature:156681-156761:-1:exon
so has part: feature:155971-156050:-1:exon
so has part: feature:155596-155702:-1:exon
so has part: feature:155014-155051:-1:exon
so has part: feature:154754-154896:-1:exon
so has part: feature:154285-154355:-1:exon
so has part: feature:153963-154051:-1:exon
so has part: feature:153699-153763:-1:exon
so has part: feature:152991-153093:-1:exon
so has part: feature:152613-152740:-1:exon
so has part: feature:152058-152183:-1:exon
so has part: feature:150973-151062:-1:exon
so has part: feature:150591-150749:-1:exon
so has part: feature:150267-150428:-1:exon
so has part: feature:149585-149661:-1:exon
so has part: feature:149371-149488:-1:exon
so has part: feature:148813-148950:-1:exon
so has part: feature:148205-148366:-1:exon

XP_010721525.1
type: Protein
SIO_000068: ncbiprotein

position:163256:-1
position: 163256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163215-163256:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:161422-161475:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:157629-157745:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:156973-157054:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:156681-156761:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:155971-156050:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:155596-155702:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:155014-155051:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:154754-154896:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:154285-154355:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:153963-154051:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:153699-153763:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:152991-153093:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:152613-152740:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:152058-152183:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:150973-151062:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:150591-150749:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:150267-150428:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:149585-149661:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:149371-149488:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:148813-148950:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:148205-148366:-1:exon

RPS6KA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: RPS6KA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ribosomal protein S6 kinase alpha-1 isoform X2
translation: MERDPKLPRICAFLTLWLHRKHRAKPCSLQLPAPSPLPSPGEGVVKEINITHHVKEGSEKADPSQFELLKVLGQGSFGKVFLVRKITPPDSNHLYAMKVLKKATLKVRDRVRTKIERDILADVNHPFVVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKAYSFCGTVEYMAPEVVNRQGHSHSADWWSYGVLMFEMLTGSLPFQGKDRKETMTLILKAKLGMPQFLSAEAQSLLRALFKRNPANRLGSGPDGAEEIKRHPFYSTIDWNKLYRREIKPPFKPAVGQPDDTFYFDTEFTSRTPKDSPGIPPSAGAHQLFRGFSFVATGLMEDSKVKPAQPPLHSVVQQLHGKNIQFSDGYVVKEAIGVGSYSVCKRCIHKATNMEYAVKVIDKSKRDPSEEIEILLRYGQHPNIITLKDVYDDGKYVYLVTELMRGGELLDKILRQKFFSEREASSVLHTICKTVEYLHSQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGVLLYTMLAGCTPFANGPSDTPEEILTRIGGGKFSVNGGNWDTVSDMAKDLVSKMLHVDPHQRLTAKQVLQHPWITQKDSLPQSQLNHQDVQLVKAWSSMAESCKEEKDLGVLFSQASTMSQRSAQVVKKANGILAVSAVVQPEGAGV
SIO_010081: RPS6KA1
subclass of: SO_0000673
so part of: RPS6KA1
location: complement(join(148205..148366,148813..148950,149371..149488,149585..149661,150267..150428,150591..150749,150973..151062,152058..152183,152613..152740,152991..153093,153699..153763,153963..154051,154285..154355,154754..154896,155014..155051,155596..155702,155971..156050,156681..156761,156973..157054,157629..157745,159558..159677))
location: region:148205-159677:-1
so has part: feature:159558-159677:-1:exon
so has part: feature:157629-157745:-1:exon
so has part: feature:156973-157054:-1:exon
so has part: feature:156681-156761:-1:exon
so has part: feature:155971-156050:-1:exon
so has part: feature:155596-155702:-1:exon
so has part: feature:155014-155051:-1:exon
so has part: feature:154754-154896:-1:exon
so has part: feature:154285-154355:-1:exon
so has part: feature:153963-154051:-1:exon
so has part: feature:153699-153763:-1:exon
so has part: feature:152991-153093:-1:exon
so has part: feature:152613-152740:-1:exon
so has part: feature:152058-152183:-1:exon
so has part: feature:150973-151062:-1:exon
so has part: feature:150591-150749:-1:exon
so has part: feature:150267-150428:-1:exon
so has part: feature:149585-149661:-1:exon
so has part: feature:149371-149488:-1:exon
so has part: feature:148813-148950:-1:exon
so has part: feature:148205-148366:-1:exon

XP_010721524.1
type: Protein
SIO_000068: ncbiprotein

position:159677:-1
position: 159677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:159558-159677:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:157629-157745:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:156973-157054:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:156681-156761:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:155971-156050:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:155596-155702:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:155014-155051:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:154754-154896:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:154285-154355:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:153963-154051:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:153699-153763:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:152991-153093:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:152613-152740:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:152058-152183:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:150973-151062:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:150591-150749:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:150267-150428:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:149585-149661:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:149371-149488:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:148813-148950:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:148205-148366:-1:exon

HMGN2
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: HMGN2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(187321..>189840)
location: region:187321-189840:-1
so has part: feature:187321-189840:-1:exon
subclass of: SO_0000010

100541539
type: Gene
SIO_000068: ncbigene

position:187321:-1
position: 187321
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:189840:-1
position: 189840
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:187321-189840:-1:exon

HMGN2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: HMGN2
product: high mobility group nucleosomal binding domain 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 222 samples with support for all annotated introns
transcript id: XM_010723246.1
SIO_010081: HMGN2
subclass of: SO_0000673
so part of: HMGN2
location: complement(join(187321..188207,188624..188719,189069..189119,189419..189448,189772..>189840))
location: region:187321-189840:-1
so has part: feature:189772-189840:-1:exon
so has part: feature:189419-189448:-1:exon
so has part: feature:189069-189119:-1:exon
so has part: feature:188624-188719:-1:exon
so has part: feature:187321-188207:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:189772-189840:-1:exon

position:189772:-1
position: 189772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:189419-189448:-1:exon

position:189419:-1
position: 189419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:189448:-1
position: 189448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:189069-189119:-1:exon

position:189069:-1
position: 189069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:189119:-1
position: 189119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:188624-188719:-1:exon

position:188624:-1
position: 188624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:188719:-1
position: 188719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:187321-188207:-1:exon

position:188207:-1
position: 188207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HMGN2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: HMGN2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: non-histone chromosomal protein HMG-17
translation: HGSCLAPQAEGDTKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKSAPKKSEKVPKGKKGKADTGKEGNNPAENGDAKTDQAQKAEGAGDAK
SIO_010081: HMGN2
subclass of: SO_0000673
so part of: HMGN2
location: complement(join(188172..188207,188624..188719,189069..189119,189419..189448,189772..>189840))
location: region:188172-189840:-1
so has part: feature:189772-189840:-1:exon
so has part: feature:189419-189448:-1:exon
so has part: feature:189069-189119:-1:exon
so has part: feature:188624-188719:-1:exon
so has part: feature:188172-188207:-1:exon

XP_010721548.1
type: Protein
SIO_000068: ncbiprotein

position:188172:-1
position: 188172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189772-189840:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:189419-189448:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:189069-189119:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:188624-188719:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:188172-188207:-1:exon

DHDDS
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: DHDDS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(191648..199852)
location: region:191648-199852:-1
so has part: feature:191648-199852:-1:exon
subclass of: SO_0000010

100541233
type: Gene
SIO_000068: ncbigene

position:191648:-1
position: 191648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:199852:-1
position: 199852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191648-199852:-1:exon

DHDDS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: DHDDS
product: dehydrodolichyl diphosphate synthase subunit, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 61 samples with support for all annotated introns
transcript id: XM_019622758.1
SIO_010081: DHDDS
subclass of: SO_0000673
so part of: DHDDS
location: complement(join(191648..193218,194289..194396,195140..195254,195885..195986,196164..196280,197144..197286,197893..198009,198933..199012,199834..199852))
location: region:191648-199852:-1
so has part: feature:199834-199852:-1:exon
so has part: feature:198933-199012:-1:exon
so has part: feature:197893-198009:-1:exon
so has part: feature:197144-197286:-1:exon
so has part: feature:196164-196280:-1:exon
so has part: feature:195885-195986:-1:exon
so has part: feature:195140-195254:-1:exon
so has part: feature:194289-194396:-1:exon
so has part: feature:191648-193218:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:199834-199852:-1:exon

position:199834:-1
position: 199834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:198933-199012:-1:exon

position:198933:-1
position: 198933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:199012:-1
position: 199012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:197893-198009:-1:exon

position:197893:-1
position: 197893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:198009:-1
position: 198009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:197144-197286:-1:exon

position:197144:-1
position: 197144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:197286:-1
position: 197286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:196164-196280:-1:exon

position:196164:-1
position: 196164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:196280:-1
position: 196280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:195885-195986:-1:exon

position:195885:-1
position: 195885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:195986:-1
position: 195986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:195140-195254:-1:exon

position:195140:-1
position: 195140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:195254:-1
position: 195254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:194289-194396:-1:exon

position:194289:-1
position: 194289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:194396:-1
position: 194396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:191648-193218:-1:exon

position:193218:-1
position: 193218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DHDDS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: DHDDS
product: dehydrodolichyl diphosphate synthase subunit, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 58 samples with support for all annotated introns
transcript id: XM_019622759.2
SIO_010081: DHDDS
subclass of: SO_0000673
so part of: DHDDS
location: complement(join(191648..193218,194289..194396,195140..195254,195885..195986,196164..196280,197144..197286,197893..198009,198933..199012,199262..199816))
location: region:191648-199816:-1
so has part: feature:199262-199816:-1:exon
so has part: feature:198933-199012:-1:exon
so has part: feature:197893-198009:-1:exon
so has part: feature:197144-197286:-1:exon
so has part: feature:196164-196280:-1:exon
so has part: feature:195885-195986:-1:exon
so has part: feature:195140-195254:-1:exon
so has part: feature:194289-194396:-1:exon
so has part: feature:191648-193218:-1:exon

position:199816:-1
position: 199816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:199262-199816:-1:exon

position:199262:-1
position: 199262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:198933-199012:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:197893-198009:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:197144-197286:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:196164-196280:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:195885-195986:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:195140-195254:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:194289-194396:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:191648-193218:-1:exon

DHDDS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: DHDDS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dehydrodolichyl diphosphate synthase complex subunit DHDDS
translation: MSWIREGELTIIERFCANIIKAGPMPKHVAFIMDGNRRYAQKCHVERQQGHSQGFDKLAQTLRWCLNLGIREVTVYAFSIENFKRSKEEVDGLMDLARQKFSRLLEERENLKKHGVCIRVLGDLPLLPLDIQELIAQAVMATRNYNKCFLNVCFAYTSRHEISNAVREMAWGVEQGLLEPSDVSESLLDKCLYTSNSPDPDLLIRTSGEVRLSDFLLWQTSHSCLVFQSVLWPEYSFWNLCEAILRFQLNYNALQKARDSYMEERKQQQMERDQAYVTKKLQQEGFASHGDSQRRRTLLQKCTAMREERIQGFLQALEHKRADFFERLCTVSA
SIO_010081: DHDDS
subclass of: SO_0000673
so part of: DHDDS
location: complement(join(192982..193218,194289..194396,195140..195254,195885..195986,196164..196280,197144..197286,197893..198009,198933..198995))
location: region:192982-198995:-1
so has part: feature:198933-198995:-1:exon
so has part: feature:197893-198009:-1:exon
so has part: feature:197144-197286:-1:exon
so has part: feature:196164-196280:-1:exon
so has part: feature:195885-195986:-1:exon
so has part: feature:195140-195254:-1:exon
so has part: feature:194289-194396:-1:exon
so has part: feature:192982-193218:-1:exon

XP_019478303.1
type: Protein
SIO_000068: ncbiprotein

position:192982:-1
position: 192982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:198995:-1
position: 198995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:198933-198995:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:197893-198009:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:197144-197286:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:196164-196280:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:195885-195986:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:195140-195254:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:194289-194396:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:192982-193218:-1:exon

DHDDS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: DHDDS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dehydrodolichyl diphosphate synthase complex subunit DHDDS
translation: MSWIREGELTIIERFCANIIKAGPMPKHVAFIMDGNRRYAQKCHVERQQGHSQGFDKLAQTLRWCLNLGIREVTVYAFSIENFKRSKEEVDGLMDLARQKFSRLLEERENLKKHGVCIRVLGDLPLLPLDIQELIAQAVMATRNYNKCFLNVCFAYTSRHEISNAVREMAWGVEQGLLEPSDVSESLLDKCLYTSNSPDPDLLIRTSGEVRLSDFLLWQTSHSCLVFQSVLWPEYSFWNLCEAILRFQLNYNALQKARDSYMEERKQQQMERDQAYVTKKLQQEGFASHGDSQRRRTLLQKCTAMREERIQGFLQALEHKRADFFERLCTVSA
SIO_010081: DHDDS
subclass of: SO_0000673
so part of: DHDDS
location: complement(join(192982..193218,194289..194396,195140..195254,195885..195986,196164..196280,197144..197286,197893..198009,198933..198995))
location: region:192982-198995:-1
so has part: feature:198933-198995:-1:exon
so has part: feature:197893-198009:-1:exon
so has part: feature:197144-197286:-1:exon
so has part: feature:196164-196280:-1:exon
so has part: feature:195885-195986:-1:exon
so has part: feature:195140-195254:-1:exon
so has part: feature:194289-194396:-1:exon
so has part: feature:192982-193218:-1:exon

XP_019478304.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:198933-198995:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:197893-198009:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:197144-197286:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:196164-196280:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:195885-195986:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:195140-195254:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:194289-194396:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:192982-193218:-1:exon

LIN28A
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LIN28A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(204408..215089)
location: region:204408-215089:-1
so has part: feature:204408-215089:-1:exon
subclass of: SO_0000010

100541388
type: Gene
SIO_000068: ncbigene

position:204408:-1
position: 204408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:215089:-1
position: 215089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:204408-215089:-1:exon

LIN28A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LIN28A
product: lin-28 homolog A
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 78% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031556769.1
SIO_010081: LIN28A
subclass of: SO_0000673
so part of: LIN28A
location: complement(join(204408..204670,205578..205762,213730..214131,214955..215089))
location: region:204408-215089:-1
so has part: feature:214955-215089:-1:exon
so has part: feature:213730-214131:-1:exon
so has part: feature:205578-205762:-1:exon
so has part: feature:204408-204670:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:214955-215089:-1:exon

position:214955:-1
position: 214955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:213730-214131:-1:exon

position:213730:-1
position: 213730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:214131:-1
position: 214131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:205578-205762:-1:exon

position:205578:-1
position: 205578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:205762:-1
position: 205762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:204408-204670:-1:exon

position:204670:-1
position: 204670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LIN28A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LIN28A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein lin-28 homolog A
translation: MRLREGRGVPTKRSLSLSAPPKPSPTRDPGGSQVAKRRGEPLEVRAGERPQRSHPRPHSGPTRTHVRAQQIAAFESRRSLFCLSHQAGPNLGLFPFLPWGAAGYGTPSAPLRCSLALSPGAKPGEEPAGDSPKAENESQPLHGSGICKWFNVRMGFGFLSMTAKGGATLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSSKGLESIRVTGPGGVFCIGSERRPKGKSLQKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVANCPAKAQQSPSSQGKPAYFREEEDMHSSALPPETRE
SIO_010081: LIN28A
subclass of: SO_0000673
so part of: LIN28A
location: complement(join(204457..204670,205578..205762,213730..214131,214955..215089))
location: region:204457-215089:-1
so has part: feature:214955-215089:-1:exon
so has part: feature:213730-214131:-1:exon
so has part: feature:205578-205762:-1:exon
so has part: feature:204457-204670:-1:exon

XP_031412629.1
type: Protein
SIO_000068: ncbiprotein

position:204457:-1
position: 204457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:214955-215089:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:213730-214131:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:205578-205762:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:204457-204670:-1:exon

CRYBG2
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: CRYBG2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 224679..230959
location: region:224679-230959:1
so has part: feature:224679-230959:1:exon
subclass of: SO_0000010

104914257
type: Gene
SIO_000068: ncbigene

position:224679:1
position: 224679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:230959:1
position: 230959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224679-230959:1:exon

CRYBG2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: CRYBG2
product: crystallin beta-gamma domain containing 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 59 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_010723233.3
SIO_010081: CRYBG2
subclass of: SO_0000673
so part of: CRYBG2
location: join(224679..225856,226407..226454,226534..226652,226887..227258,227339..227465,227542..227705,227832..227958,228069..228211,228294..228420,228523..228555,228658..228770,228880..229009,229166..229305,229388..229511,229829..229987,230331..230959)
location: region:224679-230959:1
so has part: feature:224679-225856:1:exon
so has part: feature:226407-226454:1:exon
so has part: feature:226534-226652:1:exon
so has part: feature:226887-227258:1:exon
so has part: feature:227339-227465:1:exon
so has part: feature:227542-227705:1:exon
so has part: feature:227832-227958:1:exon
so has part: feature:228069-228211:1:exon
so has part: feature:228294-228420:1:exon
so has part: feature:228523-228555:1:exon
so has part: feature:228658-228770:1:exon
so has part: feature:228880-229009:1:exon
so has part: feature:229166-229305:1:exon
so has part: feature:229388-229511:1:exon
so has part: feature:229829-229987:1:exon
so has part: feature:230331-230959:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:224679-225856:1:exon

position:225856:1
position: 225856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:226407-226454:1:exon

position:226407:1
position: 226407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:226454:1
position: 226454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:226534-226652:1:exon

position:226534:1
position: 226534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:226652:1
position: 226652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:226887-227258:1:exon

position:226887:1
position: 226887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:227258:1
position: 227258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:227339-227465:1:exon

position:227339:1
position: 227339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:227465:1
position: 227465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:227542-227705:1:exon

position:227542:1
position: 227542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:227705:1
position: 227705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:227832-227958:1:exon

position:227832:1
position: 227832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:227958:1
position: 227958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:228069-228211:1:exon

position:228069:1
position: 228069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:228211:1
position: 228211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:228294-228420:1:exon

position:228294:1
position: 228294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:228420:1
position: 228420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:228523-228555:1:exon

position:228523:1
position: 228523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:228555:1
position: 228555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:228658-228770:1:exon

position:228658:1
position: 228658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:228770:1
position: 228770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:228880-229009:1:exon

position:228880:1
position: 228880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:229009:1
position: 229009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:229166-229305:1:exon

position:229166:1
position: 229166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:229305:1
position: 229305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:229388-229511:1:exon

position:229388:1
position: 229388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:229511:1
position: 229511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:229829-229987:1:exon

position:229829:1
position: 229829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:229987:1
position: 229987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:230331-230959:1:exon

position:230331:1
position: 230331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CRYBG2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: CRYBG2
product: crystallin beta-gamma domain containing 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 60 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_010723234.3
SIO_010081: CRYBG2
subclass of: SO_0000673
so part of: CRYBG2
location: join(224679..225856,226407..226454,226534..226652,226887..227258,227339..227465,227542..227705,227832..227958,228069..228211,228294..228420,228523..228555,228658..228770,228880..229009,229166..229305,229388..229511,229829..229987,230331..230490,230578..230959)
location: region:224679-230959:1
so has part: feature:224679-225856:1:exon
so has part: feature:226407-226454:1:exon
so has part: feature:226534-226652:1:exon
so has part: feature:226887-227258:1:exon
so has part: feature:227339-227465:1:exon
so has part: feature:227542-227705:1:exon
so has part: feature:227832-227958:1:exon
so has part: feature:228069-228211:1:exon
so has part: feature:228294-228420:1:exon
so has part: feature:228523-228555:1:exon
so has part: feature:228658-228770:1:exon
so has part: feature:228880-229009:1:exon
so has part: feature:229166-229305:1:exon
so has part: feature:229388-229511:1:exon
so has part: feature:229829-229987:1:exon
so has part: feature:230331-230490:1:exon
so has part: feature:230578-230959:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:224679-225856:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:226407-226454:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:226534-226652:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:226887-227258:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:227339-227465:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:227542-227705:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:227832-227958:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:228069-228211:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228294-228420:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:228523-228555:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:228658-228770:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:228880-229009:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:229166-229305:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:229388-229511:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:229829-229987:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:230331-230490:1:exon

position:230490:1
position: 230490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:230578-230959:1:exon

position:230578:1
position: 230578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CRYBG2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: CRYBG2
product: crystallin beta-gamma domain containing 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 59 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_031556782.1
SIO_010081: CRYBG2
subclass of: SO_0000673
so part of: CRYBG2
location: join(224679..225856,226407..226454,226534..226652,226887..227043,227119..227258,227339..227465,227542..227705,227832..227958,228069..228211,228294..228420,228523..228555,228658..228770,228880..229009,229166..229305,229388..229511,229829..229987,230331..230959)
location: region:224679-230959:1
so has part: feature:224679-225856:1:exon
so has part: feature:226407-226454:1:exon
so has part: feature:226534-226652:1:exon
so has part: feature:226887-227043:1:exon
so has part: feature:227119-227258:1:exon
so has part: feature:227339-227465:1:exon
so has part: feature:227542-227705:1:exon
so has part: feature:227832-227958:1:exon
so has part: feature:228069-228211:1:exon
so has part: feature:228294-228420:1:exon
so has part: feature:228523-228555:1:exon
so has part: feature:228658-228770:1:exon
so has part: feature:228880-229009:1:exon
so has part: feature:229166-229305:1:exon
so has part: feature:229388-229511:1:exon
so has part: feature:229829-229987:1:exon
so has part: feature:230331-230959:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:224679-225856:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:226407-226454:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:226534-226652:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:226887-227043:1:exon

position:227043:1
position: 227043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:227119-227258:1:exon

position:227119:1
position: 227119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:227339-227465:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:227542-227705:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:227832-227958:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228069-228211:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:228294-228420:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:228523-228555:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:228658-228770:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:228880-229009:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:229166-229305:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:229388-229511:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:229829-229987:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:230331-230959:1:exon

CRYBG2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: CRYBG2
product: crystallin beta-gamma domain containing 2, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 63 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_010723235.3
SIO_010081: CRYBG2
subclass of: SO_0000673
so part of: CRYBG2
location: join(224679..225856,226407..226454,226534..226652,226887..227043,227119..227258,227339..227465,227542..227705,227832..227958,228069..228211,228294..228420,228523..228555,228658..228770,228880..229009,229166..229305,229388..229511,229829..229987,230331..230490,230578..230959)
location: region:224679-230959:1
so has part: feature:224679-225856:1:exon
so has part: feature:226407-226454:1:exon
so has part: feature:226534-226652:1:exon
so has part: feature:226887-227043:1:exon
so has part: feature:227119-227258:1:exon
so has part: feature:227339-227465:1:exon
so has part: feature:227542-227705:1:exon
so has part: feature:227832-227958:1:exon
so has part: feature:228069-228211:1:exon
so has part: feature:228294-228420:1:exon
so has part: feature:228523-228555:1:exon
so has part: feature:228658-228770:1:exon
so has part: feature:228880-229009:1:exon
so has part: feature:229166-229305:1:exon
so has part: feature:229388-229511:1:exon
so has part: feature:229829-229987:1:exon
so has part: feature:230331-230490:1:exon
so has part: feature:230578-230959:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:224679-225856:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:226407-226454:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:226534-226652:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:226887-227043:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:227119-227258:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:227339-227465:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:227542-227705:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:227832-227958:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228069-228211:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:228294-228420:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:228523-228555:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:228658-228770:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:228880-229009:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:229166-229305:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:229388-229511:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:229829-229987:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:230331-230490:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:230578-230959:1:exon

CRYBG2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: CRYBG2
product: crystallin beta-gamma domain containing 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 59 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_031556781.1
SIO_010081: CRYBG2
subclass of: SO_0000673
so part of: CRYBG2
location: join(224679..225856,226410..226454,226534..226652,226887..227258,227339..227465,227542..227705,227832..227958,228069..228211,228294..228420,228523..228555,228658..228770,228880..229009,229166..229305,229388..229511,229829..229987,230331..230959)
location: region:224679-230959:1
so has part: feature:224679-225856:1:exon
so has part: feature:226410-226454:1:exon
so has part: feature:226534-226652:1:exon
so has part: feature:226887-227258:1:exon
so has part: feature:227339-227465:1:exon
so has part: feature:227542-227705:1:exon
so has part: feature:227832-227958:1:exon
so has part: feature:228069-228211:1:exon
so has part: feature:228294-228420:1:exon
so has part: feature:228523-228555:1:exon
so has part: feature:228658-228770:1:exon
so has part: feature:228880-229009:1:exon
so has part: feature:229166-229305:1:exon
so has part: feature:229388-229511:1:exon
so has part: feature:229829-229987:1:exon
so has part: feature:230331-230959:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:224679-225856:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:226410-226454:1:exon

position:226410:1
position: 226410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:226534-226652:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:226887-227258:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:227339-227465:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:227542-227705:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:227832-227958:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:228069-228211:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228294-228420:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:228523-228555:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:228658-228770:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:228880-229009:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:229166-229305:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:229388-229511:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:229829-229987:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:230331-230959:1:exon

CRYBG2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: CRYBG2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta/gamma crystallin domain-containing protein 2 isoform X1
translation: MEIFVDTLRNMEPSEIRKAPKVPRQPRPSVLGRCTALPPIHEDCVAPRTHISLPVALQELLAWGRGGQRAETPPEGTESHDEEEEIENPYLSPGEKALRKAQNGNGELGSLLGGPMQGRATGEHSILFRGNVLKGMALLSDFLEHRAAAADEAKPYSRLDNSMLYSRFVSSASTHNGVSNGMGASDHPSTELEALSHDHSPPVPEEPESAGTPYPTDIPQDDKEGSVKINTRPGKIILFSEAGFAGHRREIWGDVPDATSWELSHKISIRVIRGGWVMYEKPRFHGRKCVLAEGDVEIDNPWIVYGQSDEPRGSRPFRIGSFKRVVKVSSWKMGCRALPNSATLHSVLSPHQDYRTPEISLFAEENGEGARLQFSDSAEDTRVQGQSLTASSIIVHSGLWLVYSKPFFDDDPYVLEPGGYPNLKAWGAKDPSICSMHPIRLGCPVVERPGEPQVLIYEDTAFQGHSFIISRDVYNLKRLPELPLPTVGSMRVLGGCWVGYEKEGFRGHQYLLEEGEYQDWRQWGGYGKELMSLRLIRTDFSDPALVLFEAMDFEEGPSVELSEALPDTQLAGYGTITQSIHVLSGVWVAYEGPNFSGEQYILEKGVYRNFEDWGATNCRIASAQPILQVREHNLHFVSKILLFSEPDFLGEHLAFEDEQSALPDNFVPRSCRVRGGSWILFDSQAFTGEQHVLSEGEYPTLGAMGCLSSTIICSLKKVPVFFSEPSIFLHGLECFEGKEIELNNEVRSLQAEGFNNHVLSVRVKGGIWVLCEHGDFRGRQWLLECTEITNWLTYSGLQHVGSLYPIRQRRIYFRIRSKELQLYLSVPDDVEDMKAGRVVVSSLSEQSSSVWYYEDGLLKNQVAPAMSLQVIGPAGKGAKAVLWSETRMPRQAWSINSQGQIHSQMFEDMILDVKGKAVVPAQGLLSQGPHRNGVSDGATLLFAGGRSYDRDHAIIWEVAEERPTQIWEIQVL
SIO_010081: CRYBG2
subclass of: SO_0000673
so part of: CRYBG2
location: join(225200..225856,226407..226454,226534..226652,226887..227258,227339..227465,227542..227705,227832..227958,228069..228211,228294..228420,228523..228555,228658..228770,228880..229009,229166..229305,229388..229511,229829..229987,230331..230666)
location: region:225200-230666:1
so has part: feature:225200-225856:1:exon
so has part: feature:226407-226454:1:exon
so has part: feature:226534-226652:1:exon
so has part: feature:226887-227258:1:exon
so has part: feature:227339-227465:1:exon
so has part: feature:227542-227705:1:exon
so has part: feature:227832-227958:1:exon
so has part: feature:228069-228211:1:exon
so has part: feature:228294-228420:1:exon
so has part: feature:228523-228555:1:exon
so has part: feature:228658-228770:1:exon
so has part: feature:228880-229009:1:exon
so has part: feature:229166-229305:1:exon
so has part: feature:229388-229511:1:exon
so has part: feature:229829-229987:1:exon
so has part: feature:230331-230666:1:exon

XP_010721535.2
type: Protein
SIO_000068: ncbiprotein

position:225200:1
position: 225200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:230666:1
position: 230666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:225200-225856:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:226407-226454:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:226534-226652:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:226887-227258:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:227339-227465:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:227542-227705:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:227832-227958:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:228069-228211:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228294-228420:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:228523-228555:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:228658-228770:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:228880-229009:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:229166-229305:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:229388-229511:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:229829-229987:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:230331-230666:1:exon

CRYBG2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: CRYBG2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta/gamma crystallin domain-containing protein 2 isoform X4
translation: MEIFVDTLRNMEPSEIRKAPKVPRQPRPSVLGRCTALPPIHEDCVAPRTHISLPVALQELLAWGRGGQRAETPPEGTESHDEEEEIENPYLSPGEKALRKAQNGNGELGSLLGGPMQGRATGEHSILFRGNVLKGMALLSDFLEHRAAAADEAKPYSRLDNSMLYSRFVSSASTHNGVSNGMGASDHPSTELEALSHDHSPPVPEEPESAGTPYPTDIPQDDKEGSVKINTRPGKIILFSEAGFAGHRREIWGDVPDATSWELSHKISIRVIRGGWVMYEKPRFHGRKCVLAEGDVEIDNPWIVYGQSDEPRGSRPFRIGSFKRVVKVSSWKMGCRALPNSATLHSVLSPHQDYRTPEISLFAEENGEGARLQFSDSAEDTRVQGQSLTASSIIVHSGLWLVYSKPFFDDDPYVLEPGGYPNLKAWGAKDPSICSMHPIRLGCPVVERPGEPQVLIYEDTAFQGHSFIISRDVYNLKRLPELPLPTVGSMRVLGGCWVGYEKEGFRGHQYLLEEGEYQDWRQWGGYGKELMSLRLIRTDFSDPALVLFEAMDFEEGPSVELSEALPDTQLAGYGTITQSIHVLSGVWVAYEGPNFSGEQYILEKGVYRNFEDWGATNCRIASAQPILQVREHNLHFVSKILLFSEPDFLGEHLAFEDEQSALPDNFVPRSCRVRGGSWILFDSQAFTGEQHVLSEGEYPTLGAMGCLSSTIICSLKKVPVFFSEPSIFLHGLECFEGKEIELNNEVRSLQAEGFNNHVLSVRVKGGIWVLCEHGDFRGRQWLLECTEITNWLTYSGLQHVGSLYPIRQRRIYFRIRSKELQLYLSVPDDVEDMKAGRVVVSSLSEQSSSVWYYEDGLLKNQVAPAMSLQVIGPAGKGAKAVLWSETRMPRQAWSINSQGQIHSQMFEDMILDVKGGRSYDRDHAIIWEVAEERPTQIWEIQVL
SIO_010081: CRYBG2
subclass of: SO_0000673
so part of: CRYBG2
location: join(225200..225856,226407..226454,226534..226652,226887..227258,227339..227465,227542..227705,227832..227958,228069..228211,228294..228420,228523..228555,228658..228770,228880..229009,229166..229305,229388..229511,229829..229987,230331..230490,230578..230666)
location: region:225200-230666:1
so has part: feature:225200-225856:1:exon
so has part: feature:226407-226454:1:exon
so has part: feature:226534-226652:1:exon
so has part: feature:226887-227258:1:exon
so has part: feature:227339-227465:1:exon
so has part: feature:227542-227705:1:exon
so has part: feature:227832-227958:1:exon
so has part: feature:228069-228211:1:exon
so has part: feature:228294-228420:1:exon
so has part: feature:228523-228555:1:exon
so has part: feature:228658-228770:1:exon
so has part: feature:228880-229009:1:exon
so has part: feature:229166-229305:1:exon
so has part: feature:229388-229511:1:exon
so has part: feature:229829-229987:1:exon
so has part: feature:230331-230490:1:exon
so has part: feature:230578-230666:1:exon

XP_010721536.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:225200-225856:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:226407-226454:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:226534-226652:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:226887-227258:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:227339-227465:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:227542-227705:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:227832-227958:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:228069-228211:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228294-228420:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:228523-228555:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:228658-228770:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:228880-229009:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:229166-229305:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:229388-229511:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:229829-229987:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:230331-230490:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:230578-230666:1:exon

CRYBG2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: CRYBG2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta/gamma crystallin domain-containing protein 2 isoform X3
translation: MEIFVDTLRNMEPSEIRKAPKVPRQPRPSVLGRCTALPPIHEDCVAPRTHISLPVALQELLAWGRGGQRAETPPEGTESHDEEEEIENPYLSPGEKALRKAQNGNGELGSLLGGPMQGRATGEHSILFRGNVLKGMALLSDFLEHRAAAADEAKPYSRLDNSMLYSRFVSSASTHNGVSNGMGASDHPSTELEALSHDHSPPVPEEPESAGTPYPTDIPQDDKEGSVKINTRPGKIILFSEAGFAGHRREIWGDVPDATSWELSHKISIRVIRGGWVMYEKPRFHGRKCVLAEGDVEIDNPWIVYGQSDEPRGSRPFRIGSFKRVVKDYRTPEISLFAEENGEGARLQFSDSAEDTRVQGQSLTASSIIVHSGLWLVYSKPFFDDDPYVLEPGGYPNLKAWGAKDPSICSMHPIRLGCPVVERPGEPQVLIYEDTAFQGHSFIISRDVYNLKRLPELPLPTVGSMRVLGGCWVGYEKEGFRGHQYLLEEGEYQDWRQWGGYGKELMSLRLIRTDFSDPALVLFEAMDFEEGPSVELSEALPDTQLAGYGTITQSIHVLSGVWVAYEGPNFSGEQYILEKGVYRNFEDWGATNCRIASAQPILQVREHNLHFVSKILLFSEPDFLGEHLAFEDEQSALPDNFVPRSCRVRGGSWILFDSQAFTGEQHVLSEGEYPTLGAMGCLSSTIICSLKKVPVFFSEPSIFLHGLECFEGKEIELNNEVRSLQAEGFNNHVLSVRVKGGIWVLCEHGDFRGRQWLLECTEITNWLTYSGLQHVGSLYPIRQRRIYFRIRSKELQLYLSVPDDVEDMKAGRVVVSSLSEQSSSVWYYEDGLLKNQVAPAMSLQVIGPAGKGAKAVLWSETRMPRQAWSINSQGQIHSQMFEDMILDVKGKAVVPAQGLLSQGPHRNGVSDGATLLFAGGRSYDRDHAIIWEVAEERPTQIWEIQVL
SIO_010081: CRYBG2
subclass of: SO_0000673
so part of: CRYBG2
location: join(225200..225856,226407..226454,226534..226652,226887..227043,227119..227258,227339..227465,227542..227705,227832..227958,228069..228211,228294..228420,228523..228555,228658..228770,228880..229009,229166..229305,229388..229511,229829..229987,230331..230666)
location: region:225200-230666:1
so has part: feature:225200-225856:1:exon
so has part: feature:226407-226454:1:exon
so has part: feature:226534-226652:1:exon
so has part: feature:226887-227043:1:exon
so has part: feature:227119-227258:1:exon
so has part: feature:227339-227465:1:exon
so has part: feature:227542-227705:1:exon
so has part: feature:227832-227958:1:exon
so has part: feature:228069-228211:1:exon
so has part: feature:228294-228420:1:exon
so has part: feature:228523-228555:1:exon
so has part: feature:228658-228770:1:exon
so has part: feature:228880-229009:1:exon
so has part: feature:229166-229305:1:exon
so has part: feature:229388-229511:1:exon
so has part: feature:229829-229987:1:exon
so has part: feature:230331-230666:1:exon

XP_031412642.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:225200-225856:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:226407-226454:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:226534-226652:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:226887-227043:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:227119-227258:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:227339-227465:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:227542-227705:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:227832-227958:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228069-228211:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:228294-228420:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:228523-228555:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:228658-228770:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:228880-229009:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:229166-229305:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:229388-229511:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:229829-229987:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:230331-230666:1:exon

CRYBG2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: CRYBG2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta/gamma crystallin domain-containing protein 2 isoform X5
translation: MEIFVDTLRNMEPSEIRKAPKVPRQPRPSVLGRCTALPPIHEDCVAPRTHISLPVALQELLAWGRGGQRAETPPEGTESHDEEEEIENPYLSPGEKALRKAQNGNGELGSLLGGPMQGRATGEHSILFRGNVLKGMALLSDFLEHRAAAADEAKPYSRLDNSMLYSRFVSSASTHNGVSNGMGASDHPSTELEALSHDHSPPVPEEPESAGTPYPTDIPQDDKEGSVKINTRPGKIILFSEAGFAGHRREIWGDVPDATSWELSHKISIRVIRGGWVMYEKPRFHGRKCVLAEGDVEIDNPWIVYGQSDEPRGSRPFRIGSFKRVVKDYRTPEISLFAEENGEGARLQFSDSAEDTRVQGQSLTASSIIVHSGLWLVYSKPFFDDDPYVLEPGGYPNLKAWGAKDPSICSMHPIRLGCPVVERPGEPQVLIYEDTAFQGHSFIISRDVYNLKRLPELPLPTVGSMRVLGGCWVGYEKEGFRGHQYLLEEGEYQDWRQWGGYGKELMSLRLIRTDFSDPALVLFEAMDFEEGPSVELSEALPDTQLAGYGTITQSIHVLSGVWVAYEGPNFSGEQYILEKGVYRNFEDWGATNCRIASAQPILQVREHNLHFVSKILLFSEPDFLGEHLAFEDEQSALPDNFVPRSCRVRGGSWILFDSQAFTGEQHVLSEGEYPTLGAMGCLSSTIICSLKKVPVFFSEPSIFLHGLECFEGKEIELNNEVRSLQAEGFNNHVLSVRVKGGIWVLCEHGDFRGRQWLLECTEITNWLTYSGLQHVGSLYPIRQRRIYFRIRSKELQLYLSVPDDVEDMKAGRVVVSSLSEQSSSVWYYEDGLLKNQVAPAMSLQVIGPAGKGAKAVLWSETRMPRQAWSINSQGQIHSQMFEDMILDVKGGRSYDRDHAIIWEVAEERPTQIWEIQVL
SIO_010081: CRYBG2
subclass of: SO_0000673
so part of: CRYBG2
location: join(225200..225856,226407..226454,226534..226652,226887..227043,227119..227258,227339..227465,227542..227705,227832..227958,228069..228211,228294..228420,228523..228555,228658..228770,228880..229009,229166..229305,229388..229511,229829..229987,230331..230490,230578..230666)
location: region:225200-230666:1
so has part: feature:225200-225856:1:exon
so has part: feature:226407-226454:1:exon
so has part: feature:226534-226652:1:exon
so has part: feature:226887-227043:1:exon
so has part: feature:227119-227258:1:exon
so has part: feature:227339-227465:1:exon
so has part: feature:227542-227705:1:exon
so has part: feature:227832-227958:1:exon
so has part: feature:228069-228211:1:exon
so has part: feature:228294-228420:1:exon
so has part: feature:228523-228555:1:exon
so has part: feature:228658-228770:1:exon
so has part: feature:228880-229009:1:exon
so has part: feature:229166-229305:1:exon
so has part: feature:229388-229511:1:exon
so has part: feature:229829-229987:1:exon
so has part: feature:230331-230490:1:exon
so has part: feature:230578-230666:1:exon

XP_010721537.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:225200-225856:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:226407-226454:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:226534-226652:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:226887-227043:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:227119-227258:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:227339-227465:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:227542-227705:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:227832-227958:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228069-228211:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:228294-228420:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:228523-228555:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:228658-228770:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:228880-229009:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:229166-229305:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:229388-229511:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:229829-229987:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:230331-230490:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:230578-230666:1:exon

CRYBG2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: CRYBG2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta/gamma crystallin domain-containing protein 2 isoform X2
translation: MEIFVDTLRNMEPSEIRKAPKVPRQPRPSVLGRCTALPPIHEDCVAPRTHISLPVALQELLAWGRGGQRAETPPEGTESHDEEEEIENPYLSPGEKALRKAQNGNGELGSLLGGPMQGRATGEHSILFRGNVLKGMALLSDFLEHRAAAADEAKPYSRLDNSMLYSRFVSSASTHNGVSNGMGASDHPSTELEALSHDHSPPVPEEPESAGTPYPTDIPDDKEGSVKINTRPGKIILFSEAGFAGHRREIWGDVPDATSWELSHKISIRVIRGGWVMYEKPRFHGRKCVLAEGDVEIDNPWIVYGQSDEPRGSRPFRIGSFKRVVKVSSWKMGCRALPNSATLHSVLSPHQDYRTPEISLFAEENGEGARLQFSDSAEDTRVQGQSLTASSIIVHSGLWLVYSKPFFDDDPYVLEPGGYPNLKAWGAKDPSICSMHPIRLGCPVVERPGEPQVLIYEDTAFQGHSFIISRDVYNLKRLPELPLPTVGSMRVLGGCWVGYEKEGFRGHQYLLEEGEYQDWRQWGGYGKELMSLRLIRTDFSDPALVLFEAMDFEEGPSVELSEALPDTQLAGYGTITQSIHVLSGVWVAYEGPNFSGEQYILEKGVYRNFEDWGATNCRIASAQPILQVREHNLHFVSKILLFSEPDFLGEHLAFEDEQSALPDNFVPRSCRVRGGSWILFDSQAFTGEQHVLSEGEYPTLGAMGCLSSTIICSLKKVPVFFSEPSIFLHGLECFEGKEIELNNEVRSLQAEGFNNHVLSVRVKGGIWVLCEHGDFRGRQWLLECTEITNWLTYSGLQHVGSLYPIRQRRIYFRIRSKELQLYLSVPDDVEDMKAGRVVVSSLSEQSSSVWYYEDGLLKNQVAPAMSLQVIGPAGKGAKAVLWSETRMPRQAWSINSQGQIHSQMFEDMILDVKGKAVVPAQGLLSQGPHRNGVSDGATLLFAGGRSYDRDHAIIWEVAEERPTQIWEIQVL
SIO_010081: CRYBG2
subclass of: SO_0000673
so part of: CRYBG2
location: join(225200..225856,226410..226454,226534..226652,226887..227258,227339..227465,227542..227705,227832..227958,228069..228211,228294..228420,228523..228555,228658..228770,228880..229009,229166..229305,229388..229511,229829..229987,230331..230666)
location: region:225200-230666:1
so has part: feature:225200-225856:1:exon
so has part: feature:226410-226454:1:exon
so has part: feature:226534-226652:1:exon
so has part: feature:226887-227258:1:exon
so has part: feature:227339-227465:1:exon
so has part: feature:227542-227705:1:exon
so has part: feature:227832-227958:1:exon
so has part: feature:228069-228211:1:exon
so has part: feature:228294-228420:1:exon
so has part: feature:228523-228555:1:exon
so has part: feature:228658-228770:1:exon
so has part: feature:228880-229009:1:exon
so has part: feature:229166-229305:1:exon
so has part: feature:229388-229511:1:exon
so has part: feature:229829-229987:1:exon
so has part: feature:230331-230666:1:exon

XP_031412641.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:225200-225856:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:226410-226454:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:226534-226652:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:226887-227258:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:227339-227465:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:227542-227705:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:227832-227958:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:228069-228211:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228294-228420:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:228523-228555:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:228658-228770:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:228880-229009:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:229166-229305:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:229388-229511:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:229829-229987:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:230331-230666:1:exon

LOC104914260
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914260
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(232803..240780)
location: region:232803-240780:-1
so has part: feature:232803-240780:-1:exon
subclass of: SO_0000011

104914260
type: Gene
SIO_000068: ncbigene

position:232803:-1
position: 232803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:240780:-1
position: 240780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232803-240780:-1:exon

LOC104914260
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC104914260
product: uncharacterized LOC104914260, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_795926.2
SIO_010081: LOC104914260
subclass of: SO_0000673
so part of: LOC104914260
location: complement(join(232803..233090,234404..234676,236066..236209,236635..236715,237016..237165,238479..239199,240447..240780))
location: region:232803-240780:-1
so has part: feature:240447-240780:-1:exon
so has part: feature:238479-239199:-1:exon
so has part: feature:237016-237165:-1:exon
so has part: feature:236635-236715:-1:exon
so has part: feature:236066-236209:-1:exon
so has part: feature:234404-234676:-1:exon
so has part: feature:232803-233090:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:240447-240780:-1:exon

position:240447:-1
position: 240447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:238479-239199:-1:exon

position:238479:-1
position: 238479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:239199:-1
position: 239199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:237016-237165:-1:exon

position:237016:-1
position: 237016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:237165:-1
position: 237165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:236635-236715:-1:exon

position:236635:-1
position: 236635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:236715:-1
position: 236715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:236066-236209:-1:exon

position:236066:-1
position: 236066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:236209:-1
position: 236209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:234404-234676:-1:exon

position:234404:-1
position: 234404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:234676:-1
position: 234676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:232803-233090:-1:exon

position:233090:-1
position: 233090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104914260
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC104914260
product: uncharacterized LOC104914260, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XR_795927.3
SIO_010081: LOC104914260
subclass of: SO_0000673
so part of: LOC104914260
location: complement(join(232803..233090,234404..234676,236066..236209,236635..236715,237016..237165,238714..239199,240447..240774))
location: region:232803-240774:-1
so has part: feature:240447-240774:-1:exon
so has part: feature:238714-239199:-1:exon
so has part: feature:237016-237165:-1:exon
so has part: feature:236635-236715:-1:exon
so has part: feature:236066-236209:-1:exon
so has part: feature:234404-234676:-1:exon
so has part: feature:232803-233090:-1:exon

position:240774:-1
position: 240774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:240447-240774:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:238714-239199:-1:exon

position:238714:-1
position: 238714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:237016-237165:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:236635-236715:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:236066-236209:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:234404-234676:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:232803-233090:-1:exon

LOC104914260
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC104914260
product: uncharacterized LOC104914260, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XR_795928.1
SIO_010081: LOC104914260
subclass of: SO_0000673
so part of: LOC104914260
location: complement(join(232803..233090,234404..234676,234793..234807))
location: region:232803-234807:-1
so has part: feature:234793-234807:-1:exon
so has part: feature:234404-234676:-1:exon
so has part: feature:232803-233090:-1:exon

position:234807:-1
position: 234807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234793-234807:-1:exon

position:234793:-1
position: 234793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:234404-234676:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:232803-233090:-1:exon

UBXN11
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: UBXN11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 234903..247183
location: region:234903-247183:1
so has part: feature:234903-247183:1:exon
subclass of: SO_0000010

104914259
type: Gene
SIO_000068: ncbigene

position:234903:1
position: 234903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:247183:1
position: 247183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234903-247183:1:exon

UBXN11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: UBXN11
product: UBX domain protein 11, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_019622767.2
SIO_010081: UBXN11
subclass of: SO_0000673
so part of: UBXN11
location: join(234903..235791,236670..236996,237113..237213,237980..238034,238999..239075,239554..239665,241033..241250,241921..241998,243230..243350,244159..244259,244476..244543,245208..245354,245941..247183)
location: region:234903-247183:1
so has part: feature:234903-235791:1:exon
so has part: feature:236670-236996:1:exon
so has part: feature:237113-237213:1:exon
so has part: feature:237980-238034:1:exon
so has part: feature:238999-239075:1:exon
so has part: feature:239554-239665:1:exon
so has part: feature:241033-241250:1:exon
so has part: feature:241921-241998:1:exon
so has part: feature:243230-243350:1:exon
so has part: feature:244159-244259:1:exon
so has part: feature:244476-244543:1:exon
so has part: feature:245208-245354:1:exon
so has part: feature:245941-247183:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:234903-235791:1:exon

position:235791:1
position: 235791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:236670-236996:1:exon

position:236670:1
position: 236670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:236996:1
position: 236996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:237113-237213:1:exon

position:237113:1
position: 237113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:237213:1
position: 237213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:237980-238034:1:exon

position:237980:1
position: 237980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:238034:1
position: 238034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:238999-239075:1:exon

position:238999:1
position: 238999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:239075:1
position: 239075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:239554-239665:1:exon

position:239554:1
position: 239554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:239665:1
position: 239665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:241033-241250:1:exon

position:241033:1
position: 241033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:241250:1
position: 241250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:241921-241998:1:exon

position:241921:1
position: 241921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:241998:1
position: 241998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:243230-243350:1:exon

position:243230:1
position: 243230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:243350:1
position: 243350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:244159-244259:1:exon

position:244159:1
position: 244159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:244259:1
position: 244259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:244476-244543:1:exon

position:244476:1
position: 244476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:244543:1
position: 244543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:245208-245354:1:exon

position:245208:1
position: 245208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:245354:1
position: 245354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:245941-247183:1:exon

position:245941:1
position: 245941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

UBXN11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: UBXN11
product: UBX domain protein 11, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_019622763.2
SIO_010081: UBXN11
subclass of: SO_0000673
so part of: UBXN11
location: join(234903..235791,237113..237213,237980..238034,238999..239075,239554..239665,241033..241250,241921..241998,243230..243350,244159..244259,244476..244543,245208..245354,245941..247183)
location: region:234903-247183:1
so has part: feature:234903-235791:1:exon
so has part: feature:237113-237213:1:exon
so has part: feature:237980-238034:1:exon
so has part: feature:238999-239075:1:exon
so has part: feature:239554-239665:1:exon
so has part: feature:241033-241250:1:exon
so has part: feature:241921-241998:1:exon
so has part: feature:243230-243350:1:exon
so has part: feature:244159-244259:1:exon
so has part: feature:244476-244543:1:exon
so has part: feature:245208-245354:1:exon
so has part: feature:245941-247183:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:234903-235791:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:237113-237213:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:237980-238034:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:238999-239075:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:239554-239665:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:241033-241250:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:241921-241998:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:243230-243350:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:244159-244259:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:244476-244543:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:245208-245354:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:245941-247183:1:exon

UBXN11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: UBXN11
product: UBX domain protein 11, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_019622766.2
SIO_010081: UBXN11
subclass of: SO_0000673
so part of: UBXN11
location: join(234903..235791,237119..237213,237980..238034,238999..239075,239554..239665,241033..241250,241921..241998,243230..243350,244159..244259,244476..244543,245208..245354,245941..247183)
location: region:234903-247183:1
so has part: feature:234903-235791:1:exon
so has part: feature:237119-237213:1:exon
so has part: feature:237980-238034:1:exon
so has part: feature:238999-239075:1:exon
so has part: feature:239554-239665:1:exon
so has part: feature:241033-241250:1:exon
so has part: feature:241921-241998:1:exon
so has part: feature:243230-243350:1:exon
so has part: feature:244159-244259:1:exon
so has part: feature:244476-244543:1:exon
so has part: feature:245208-245354:1:exon
so has part: feature:245941-247183:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:234903-235791:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:237119-237213:1:exon

position:237119:1
position: 237119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:237980-238034:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:238999-239075:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:239554-239665:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:241033-241250:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:241921-241998:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:243230-243350:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:244159-244259:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:244476-244543:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:245208-245354:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:245941-247183:1:exon

UBXN11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: UBXN11
product: UBX domain protein 11, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_019622765.2
SIO_010081: UBXN11
subclass of: SO_0000673
so part of: UBXN11
location: join(234903..235719,235841..235930,237113..237213,237980..238034,238999..239075,239554..239665,241033..241250,241921..241998,243230..243350,244159..244259,244476..244543,245208..245354,245941..247183)
location: region:234903-247183:1
so has part: feature:234903-235719:1:exon
so has part: feature:235841-235930:1:exon
so has part: feature:237113-237213:1:exon
so has part: feature:237980-238034:1:exon
so has part: feature:238999-239075:1:exon
so has part: feature:239554-239665:1:exon
so has part: feature:241033-241250:1:exon
so has part: feature:241921-241998:1:exon
so has part: feature:243230-243350:1:exon
so has part: feature:244159-244259:1:exon
so has part: feature:244476-244543:1:exon
so has part: feature:245208-245354:1:exon
so has part: feature:245941-247183:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:234903-235719:1:exon

position:235719:1
position: 235719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:235841-235930:1:exon

position:235841:1
position: 235841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:235930:1
position: 235930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:237113-237213:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:237980-238034:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:238999-239075:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:239554-239665:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:241033-241250:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:241921-241998:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:243230-243350:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:244159-244259:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:244476-244543:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:245208-245354:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:245941-247183:1:exon

UBXN11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: UBXN11
product: UBX domain protein 11, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_019622769.2
SIO_010081: UBXN11
subclass of: SO_0000673
so part of: UBXN11
location: join(234903..235719,237113..237213,237980..238034,238999..239075,239554..239665,241033..241250,241921..241998,243230..243350,244159..244259,244476..244543,245208..245354,245941..247183)
location: region:234903-247183:1
so has part: feature:234903-235719:1:exon
so has part: feature:237113-237213:1:exon
so has part: feature:237980-238034:1:exon
so has part: feature:238999-239075:1:exon
so has part: feature:239554-239665:1:exon
so has part: feature:241033-241250:1:exon
so has part: feature:241921-241998:1:exon
so has part: feature:243230-243350:1:exon
so has part: feature:244159-244259:1:exon
so has part: feature:244476-244543:1:exon
so has part: feature:245208-245354:1:exon
so has part: feature:245941-247183:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:234903-235719:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:237113-237213:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:237980-238034:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:238999-239075:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:239554-239665:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:241033-241250:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:241921-241998:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:243230-243350:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:244159-244259:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:244476-244543:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:245208-245354:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:245941-247183:1:exon

UBXN11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: UBXN11
product: UBX domain protein 11, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_019622761.2
SIO_010081: UBXN11
subclass of: SO_0000673
so part of: UBXN11
location: join(235937..236136,237113..237213,237980..238034,238999..239075,239554..239665,241033..241250,241921..241998,243230..243350,244159..244259,244476..244543,245208..245354,245941..247183)
location: region:235937-247183:1
so has part: feature:235937-236136:1:exon
so has part: feature:237113-237213:1:exon
so has part: feature:237980-238034:1:exon
so has part: feature:238999-239075:1:exon
so has part: feature:239554-239665:1:exon
so has part: feature:241033-241250:1:exon
so has part: feature:241921-241998:1:exon
so has part: feature:243230-243350:1:exon
so has part: feature:244159-244259:1:exon
so has part: feature:244476-244543:1:exon
so has part: feature:245208-245354:1:exon
so has part: feature:245941-247183:1:exon

position:235937:1
position: 235937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235937-236136:1:exon

position:236136:1
position: 236136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:237113-237213:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:237980-238034:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:238999-239075:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:239554-239665:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:241033-241250:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:241921-241998:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:243230-243350:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:244159-244259:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:244476-244543:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:245208-245354:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:245941-247183:1:exon

UBXN11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: UBXN11
product: UBX domain protein 11, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_019622762.2
SIO_010081: UBXN11
subclass of: SO_0000673
so part of: UBXN11
location: join(235937..236136,237113..237213,237980..238034,238999..239075,239554..239665,241033..241250,241921..241998,243230..243350,244159..244259,244476..244543,245941..247183)
location: region:235937-247183:1
so has part: feature:235937-236136:1:exon
so has part: feature:237113-237213:1:exon
so has part: feature:237980-238034:1:exon
so has part: feature:238999-239075:1:exon
so has part: feature:239554-239665:1:exon
so has part: feature:241033-241250:1:exon
so has part: feature:241921-241998:1:exon
so has part: feature:243230-243350:1:exon
so has part: feature:244159-244259:1:exon
so has part: feature:244476-244543:1:exon
so has part: feature:245941-247183:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:235937-236136:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:237113-237213:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:237980-238034:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:238999-239075:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:239554-239665:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:241033-241250:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:241921-241998:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:243230-243350:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:244159-244259:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:244476-244543:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:245941-247183:1:exon

UBXN11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: UBXN11
product: UBX domain protein 11, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_019622770.1
SIO_010081: UBXN11
subclass of: SO_0000673
so part of: UBXN11
location: join(235937..236136,237113..237213,237980..238034,238999..239075,239554..239665,241033..241250,241921..241998,243230..243350,244159..244259,245941..246054)
location: region:235937-246054:1
so has part: feature:235937-236136:1:exon
so has part: feature:237113-237213:1:exon
so has part: feature:237980-238034:1:exon
so has part: feature:238999-239075:1:exon
so has part: feature:239554-239665:1:exon
so has part: feature:241033-241250:1:exon
so has part: feature:241921-241998:1:exon
so has part: feature:243230-243350:1:exon
so has part: feature:244159-244259:1:exon
so has part: feature:245941-246054:1:exon

position:246054:1
position: 246054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235937-236136:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:237113-237213:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:237980-238034:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:238999-239075:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:239554-239665:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:241033-241250:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:241921-241998:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:243230-243350:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:244159-244259:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:245941-246054:1:exon

UBXN11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: UBXN11
product: UBX domain protein 11, transcript variant X10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_019622771.2
SIO_010081: UBXN11
subclass of: SO_0000673
so part of: UBXN11
location: join(235937..236136,237113..237213,237980..238034,238999..239075,239554..239665,241033..241250,241921..241998,243230..243350,244159..244259,245208..245349)
location: region:235937-245349:1
so has part: feature:235937-236136:1:exon
so has part: feature:237113-237213:1:exon
so has part: feature:237980-238034:1:exon
so has part: feature:238999-239075:1:exon
so has part: feature:239554-239665:1:exon
so has part: feature:241033-241250:1:exon
so has part: feature:241921-241998:1:exon
so has part: feature:243230-243350:1:exon
so has part: feature:244159-244259:1:exon
so has part: feature:245208-245349:1:exon

position:245349:1
position: 245349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235937-236136:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:237113-237213:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:237980-238034:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:238999-239075:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:239554-239665:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:241033-241250:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:241921-241998:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:243230-243350:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:244159-244259:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:245208-245349:1:exon

UBXN11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: UBXN11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: UBX domain-containing protein 11 isoform X1
translation: MQSLGPSGQPLPLCFRKLAHQAIPPSTKLTNLSLFFIYSLLTIFHSRAQLCCLLARHCSPSDTSHGTVPTDMELMSSMMQKISLLEQKIDKQAQEIQLKDRKIAELEEKMKTLQKGEDGPESSAAEDLETRCLQLQTQVWEMERFLNDYGLIWVGDRHEELEDLESLRDDELLAKRFWKPGEAVVSKHQVDFDLILENVKSLNMLAGDGVSHVEHTPGGARLRQPEPLPLTLYQNGIVMLDGPFRSYEEQSAQQCLQDIMDGYFPSELQARYPDGVPLQVTDRRDVVFQERDLPGSFPGHGQVVGHSKLSRVEEPTEIPGPTPSLEQFWNKYSTSSMHSEAMATQDTVGAMQQGSEGVRSSKEIVVGTPGLPALQSLERAEEAGASAPEVCTLRIKSESGEQMYVIKMLFSETIGDLRLHLAHARGGDSDSYEIISTFPQRVYADNSRSLQECGLIPSASLLLRRRDPFPPEGTGLQTA
SIO_010081: UBXN11
subclass of: SO_0000673
so part of: UBXN11
location: join(235941..236136,237113..237213,237980..238034,238999..239075,239554..239665,241033..241250,241921..241998,243230..243350,244159..244259,244476..244543,245208..245354,245941..246106)
location: region:235941-246106:1
so has part: feature:235941-236136:1:exon
so has part: feature:237113-237213:1:exon
so has part: feature:237980-238034:1:exon
so has part: feature:238999-239075:1:exon
so has part: feature:239554-239665:1:exon
so has part: feature:241033-241250:1:exon
so has part: feature:241921-241998:1:exon
so has part: feature:243230-243350:1:exon
so has part: feature:244159-244259:1:exon
so has part: feature:244476-244543:1:exon
so has part: feature:245208-245354:1:exon
so has part: feature:245941-246106:1:exon

XP_019478306.1
type: Protein
SIO_000068: ncbiprotein

position:235941:1
position: 235941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:246106:1
position: 246106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235941-236136:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:237113-237213:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:237980-238034:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:238999-239075:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:239554-239665:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:241033-241250:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:241921-241998:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:243230-243350:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:244159-244259:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:244476-244543:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:245208-245354:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:245941-246106:1:exon

UBXN11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: UBXN11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: UBX domain-containing protein 11 isoform X2
translation: MQSLGPSGQPLPLCFRKLAHQAIPPSTKLTNLSLFFIYSLLTIFHSRAQLCCLLARHCSPSDTSHGTVPTDMELMSSMMQKISLLEQKIDKQAQEIQLKDRKIAELEEKMKTLQKGEDGPESSAAEDLETRCLQLQTQVWEMERFLNDYGLIWVGDRHEELEDLESLRDDELLAKRFWKPGEAVVSKHQVDFDLILENVKSLNMLAGDGVSHVEHTPGGARLRQPEPLPLTLYQNGIVMLDGPFRSYEEQSAQQCLQDIMDGYFPSELQARYPDGVPLQVTDRRDVVFQERDLPGSFPGHGQVVGHSKLSRVEEPTEIPGPTPSLEQFWNKYSTSSMHSEAMATQDTVGAMQQGSEGVRSSKEIVVGTPGLPALQRGGDSDSYEIISTFPQRVYADNSRSLQECGLIPSASLLLRRRDPFPPEGTGLQTA
SIO_010081: UBXN11
subclass of: SO_0000673
so part of: UBXN11
location: join(235941..236136,237113..237213,237980..238034,238999..239075,239554..239665,241033..241250,241921..241998,243230..243350,244159..244259,244476..244543,245941..246106)
location: region:235941-246106:1
so has part: feature:235941-236136:1:exon
so has part: feature:237113-237213:1:exon
so has part: feature:237980-238034:1:exon
so has part: feature:238999-239075:1:exon
so has part: feature:239554-239665:1:exon
so has part: feature:241033-241250:1:exon
so has part: feature:241921-241998:1:exon
so has part: feature:243230-243350:1:exon
so has part: feature:244159-244259:1:exon
so has part: feature:244476-244543:1:exon
so has part: feature:245941-246106:1:exon

XP_019478307.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:235941-236136:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:237113-237213:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:237980-238034:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:238999-239075:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:239554-239665:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:241033-241250:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:241921-241998:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:243230-243350:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:244159-244259:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:244476-244543:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:245941-246106:1:exon

UBXN11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: UBXN11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: UBX domain-containing protein 11 isoform X5
translation: MQSLGPSGQPLPLCFRKLAHQAIPPSTKLTNLSLFFIYSLLTIFHSRAQLCCLLARHCSPSDTSHGTVPTDMELMSSMMQKISLLEQKIDKQAQEIQLKDRKIAELEEKMKTLQKGEDGPESSAAEDLETRCLQLQTQVWEMERFLNDYGLIWVGDRHEELEDLESLRDDELLAKRFWKPGEAVVSKHQVDFDLILENVKSLNMLAGDGVSHVEHTPGGARLRQPEPLPLTLYQNGIVMLDGPFRSYEEQSAQQCLQDIMDGYFPSELQARYPDGVPLQVTDRRDVVFQERDLPGSFPGHGQVVGHSKLSRVEEPTEIPGPTPSLEQFWNKYSTSSMHSEAMATQDTVGAMQQGWRFRLI
SIO_010081: UBXN11
subclass of: SO_0000673
so part of: UBXN11
location: join(235941..236136,237113..237213,237980..238034,238999..239075,239554..239665,241033..241250,241921..241998,243230..243350,244159..244259,245941..245964)
location: region:235941-245964:1
so has part: feature:235941-236136:1:exon
so has part: feature:237113-237213:1:exon
so has part: feature:237980-238034:1:exon
so has part: feature:238999-239075:1:exon
so has part: feature:239554-239665:1:exon
so has part: feature:241033-241250:1:exon
so has part: feature:241921-241998:1:exon
so has part: feature:243230-243350:1:exon
so has part: feature:244159-244259:1:exon
so has part: feature:245941-245964:1:exon

XP_019478315.1
type: Protein
SIO_000068: ncbiprotein

position:245964:1
position: 245964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235941-236136:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:237113-237213:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:237980-238034:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:238999-239075:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:239554-239665:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:241033-241250:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:241921-241998:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:243230-243350:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:244159-244259:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:245941-245964:1:exon

UBXN11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: UBXN11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: UBX domain-containing protein 11 isoform X6
translation: MQSLGPSGQPLPLCFRKLAHQAIPPSTKLTNLSLFFIYSLLTIFHSRAQLCCLLARHCSPSDTSHGTVPTDMELMSSMMQKISLLEQKIDKQAQEIQLKDRKIAELEEKMKTLQKGEDGPESSAAEDLETRCLQLQTQVWEMERFLNDYGLIWVGDRHEELEDLESLRDDELLAKRFWKPGEAVVSKHQVDFDLILENVKSLNMLAGDGVSHVEHTPGGARLRQPEPLPLTLYQNGIVMLDGPFRSYEEQSAQQCLQDIMDGYFPSELQARYPDGVPLQVTDRRDVVFQERDLPGSFPGHGQVVGHSKLSRVEEPTEIPGPTPSLEQFWNKYSTSSMHSEAMATQDTVGAMQQLRES
SIO_010081: UBXN11
subclass of: SO_0000673
so part of: UBXN11
location: join(235941..236136,237113..237213,237980..238034,238999..239075,239554..239665,241033..241250,241921..241998,243230..243350,244159..244259,245208..245222)
location: region:235941-245222:1
so has part: feature:235941-236136:1:exon
so has part: feature:237113-237213:1:exon
so has part: feature:237980-238034:1:exon
so has part: feature:238999-239075:1:exon
so has part: feature:239554-239665:1:exon
so has part: feature:241033-241250:1:exon
so has part: feature:241921-241998:1:exon
so has part: feature:243230-243350:1:exon
so has part: feature:244159-244259:1:exon
so has part: feature:245208-245222:1:exon

XP_019478316.1
type: Protein
SIO_000068: ncbiprotein

position:245222:1
position: 245222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235941-236136:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:237113-237213:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:237980-238034:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:238999-239075:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:239554-239665:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:241033-241250:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:241921-241998:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:243230-243350:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:244159-244259:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:245208-245222:1:exon

UBXN11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: UBXN11
product: UBX domain protein 11, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_010723237.3
SIO_010081: UBXN11
subclass of: SO_0000673
so part of: UBXN11
location: join(237058..237213,237980..238034,238999..239075,239554..239665,241033..241250,241921..241998,243230..243350,244159..244259,244476..244543,245208..245354,245941..247183)
location: region:237058-247183:1
so has part: feature:237058-237213:1:exon
so has part: feature:237980-238034:1:exon
so has part: feature:238999-239075:1:exon
so has part: feature:239554-239665:1:exon
so has part: feature:241033-241250:1:exon
so has part: feature:241921-241998:1:exon
so has part: feature:243230-243350:1:exon
so has part: feature:244159-244259:1:exon
so has part: feature:244476-244543:1:exon
so has part: feature:245208-245354:1:exon
so has part: feature:245941-247183:1:exon

position:237058:1
position: 237058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:237058-237213:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:237980-238034:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:238999-239075:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:239554-239665:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:241033-241250:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:241921-241998:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:243230-243350:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:244159-244259:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:244476-244543:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:245208-245354:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:245941-247183:1:exon

UBXN11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: UBXN11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: UBX domain-containing protein 11 isoform X3
translation: MNCLSRGNVFVLSGTVPTDMELMSSMMQKISLLEQKIDKQAQEIQLKDRKIAELEEKMKTLQKGEDGPESSAAEDLETRCLQLQTQVWEMERFLNDYGLIWVGDRHEELEDLESLRDDELLAKRFWKPGEAVVSKHQVDFDLILENVKSLNMLAGDGVSHVEHTPGGARLRQPEPLPLTLYQNGIVMLDGPFRSYEEQSAQQCLQDIMDGYFPSELQARYPDGVPLQVTDRRDVVFQERDLPGSFPGHGQVVGHSKLSRVEEPTEIPGPTPSLEQFWNKYSTSSMHSEAMATQDTVGAMQQGSEGVRSSKEIVVGTPGLPALQSLERAEEAGASAPEVCTLRIKSESGEQMYVIKMLFSETIGDLRLHLAHARGGDSDSYEIISTFPQRVYADNSRSLQECGLIPSASLLLRRRDPFPPEGTGLQTA
SIO_010081: UBXN11
subclass of: SO_0000673
so part of: UBXN11
location: join(237073..237213,237980..238034,238999..239075,239554..239665,241033..241250,241921..241998,243230..243350,244159..244259,244476..244543,245208..245354,245941..246106)
location: region:237073-246106:1
so has part: feature:237073-237213:1:exon
so has part: feature:237980-238034:1:exon
so has part: feature:238999-239075:1:exon
so has part: feature:239554-239665:1:exon
so has part: feature:241033-241250:1:exon
so has part: feature:241921-241998:1:exon
so has part: feature:243230-243350:1:exon
so has part: feature:244159-244259:1:exon
so has part: feature:244476-244543:1:exon
so has part: feature:245208-245354:1:exon
so has part: feature:245941-246106:1:exon

XP_010721539.2
type: Protein
SIO_000068: ncbiprotein

position:237073:1
position: 237073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:237073-237213:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:237980-238034:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:238999-239075:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:239554-239665:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:241033-241250:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:241921-241998:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:243230-243350:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:244159-244259:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:244476-244543:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:245208-245354:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:245941-246106:1:exon

UBXN11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: UBXN11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: UBX domain-containing protein 11 isoform X4
translation: MELMSSMMQKISLLEQKIDKQAQEIQLKDRKIAELEEKMKTLQKGEDGPESSAAEDLETRCLQLQTQVWEMERFLNDYGLIWVGDRHEELEDLESLRDDELLAKRFWKPGEAVVSKHQVDFDLILENVKSLNMLAGDGVSHVEHTPGGARLRQPEPLPLTLYQNGIVMLDGPFRSYEEQSAQQCLQDIMDGYFPSELQARYPDGVPLQVTDRRDVVFQERDLPGSFPGHGQVVGHSKLSRVEEPTEIPGPTPSLEQFWNKYSTSSMHSEAMATQDTVGAMQQGSEGVRSSKEIVVGTPGLPALQSLERAEEAGASAPEVCTLRIKSESGEQMYVIKMLFSETIGDLRLHLAHARGGDSDSYEIISTFPQRVYADNSRSLQECGLIPSASLLLRRRDPFPPEGTGLQTA
SIO_010081: UBXN11
subclass of: SO_0000673
so part of: UBXN11
location: join(237130..237213,237980..238034,238999..239075,239554..239665,241033..241250,241921..241998,243230..243350,244159..244259,244476..244543,245208..245354,245941..246106)
location: region:237130-246106:1
so has part: feature:237130-237213:1:exon
so has part: feature:237980-238034:1:exon
so has part: feature:238999-239075:1:exon
so has part: feature:239554-239665:1:exon
so has part: feature:241033-241250:1:exon
so has part: feature:241921-241998:1:exon
so has part: feature:243230-243350:1:exon
so has part: feature:244159-244259:1:exon
so has part: feature:244476-244543:1:exon
so has part: feature:245208-245354:1:exon
so has part: feature:245941-246106:1:exon

XP_019478308.1
type: Protein
SIO_000068: ncbiprotein

position:237130:1
position: 237130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:237130-237213:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:237980-238034:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:238999-239075:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:239554-239665:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:241033-241250:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:241921-241998:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:243230-243350:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:244159-244259:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:244476-244543:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:245208-245354:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:245941-246106:1:exon

UBXN11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: UBXN11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: UBX domain-containing protein 11 isoform X4
translation: MELMSSMMQKISLLEQKIDKQAQEIQLKDRKIAELEEKMKTLQKGEDGPESSAAEDLETRCLQLQTQVWEMERFLNDYGLIWVGDRHEELEDLESLRDDELLAKRFWKPGEAVVSKHQVDFDLILENVKSLNMLAGDGVSHVEHTPGGARLRQPEPLPLTLYQNGIVMLDGPFRSYEEQSAQQCLQDIMDGYFPSELQARYPDGVPLQVTDRRDVVFQERDLPGSFPGHGQVVGHSKLSRVEEPTEIPGPTPSLEQFWNKYSTSSMHSEAMATQDTVGAMQQGSEGVRSSKEIVVGTPGLPALQSLERAEEAGASAPEVCTLRIKSESGEQMYVIKMLFSETIGDLRLHLAHARGGDSDSYEIISTFPQRVYADNSRSLQECGLIPSASLLLRRRDPFPPEGTGLQTA
SIO_010081: UBXN11
subclass of: SO_0000673
so part of: UBXN11
location: join(237130..237213,237980..238034,238999..239075,239554..239665,241033..241250,241921..241998,243230..243350,244159..244259,244476..244543,245208..245354,245941..246106)
location: region:237130-246106:1
so has part: feature:237130-237213:1:exon
so has part: feature:237980-238034:1:exon
so has part: feature:238999-239075:1:exon
so has part: feature:239554-239665:1:exon
so has part: feature:241033-241250:1:exon
so has part: feature:241921-241998:1:exon
so has part: feature:243230-243350:1:exon
so has part: feature:244159-244259:1:exon
so has part: feature:244476-244543:1:exon
so has part: feature:245208-245354:1:exon
so has part: feature:245941-246106:1:exon

XP_019478310.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:237130-237213:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:237980-238034:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:238999-239075:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:239554-239665:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:241033-241250:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:241921-241998:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:243230-243350:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:244159-244259:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:244476-244543:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:245208-245354:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:245941-246106:1:exon

UBXN11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: UBXN11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: UBX domain-containing protein 11 isoform X4
translation: MELMSSMMQKISLLEQKIDKQAQEIQLKDRKIAELEEKMKTLQKGEDGPESSAAEDLETRCLQLQTQVWEMERFLNDYGLIWVGDRHEELEDLESLRDDELLAKRFWKPGEAVVSKHQVDFDLILENVKSLNMLAGDGVSHVEHTPGGARLRQPEPLPLTLYQNGIVMLDGPFRSYEEQSAQQCLQDIMDGYFPSELQARYPDGVPLQVTDRRDVVFQERDLPGSFPGHGQVVGHSKLSRVEEPTEIPGPTPSLEQFWNKYSTSSMHSEAMATQDTVGAMQQGSEGVRSSKEIVVGTPGLPALQSLERAEEAGASAPEVCTLRIKSESGEQMYVIKMLFSETIGDLRLHLAHARGGDSDSYEIISTFPQRVYADNSRSLQECGLIPSASLLLRRRDPFPPEGTGLQTA
SIO_010081: UBXN11
subclass of: SO_0000673
so part of: UBXN11
location: join(237130..237213,237980..238034,238999..239075,239554..239665,241033..241250,241921..241998,243230..243350,244159..244259,244476..244543,245208..245354,245941..246106)
location: region:237130-246106:1
so has part: feature:237130-237213:1:exon
so has part: feature:237980-238034:1:exon
so has part: feature:238999-239075:1:exon
so has part: feature:239554-239665:1:exon
so has part: feature:241033-241250:1:exon
so has part: feature:241921-241998:1:exon
so has part: feature:243230-243350:1:exon
so has part: feature:244159-244259:1:exon
so has part: feature:244476-244543:1:exon
so has part: feature:245208-245354:1:exon
so has part: feature:245941-246106:1:exon

XP_019478311.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:237130-237213:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:237980-238034:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:238999-239075:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:239554-239665:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:241033-241250:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:241921-241998:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:243230-243350:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:244159-244259:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:244476-244543:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:245208-245354:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:245941-246106:1:exon

UBXN11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: UBXN11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: UBX domain-containing protein 11 isoform X4
translation: MELMSSMMQKISLLEQKIDKQAQEIQLKDRKIAELEEKMKTLQKGEDGPESSAAEDLETRCLQLQTQVWEMERFLNDYGLIWVGDRHEELEDLESLRDDELLAKRFWKPGEAVVSKHQVDFDLILENVKSLNMLAGDGVSHVEHTPGGARLRQPEPLPLTLYQNGIVMLDGPFRSYEEQSAQQCLQDIMDGYFPSELQARYPDGVPLQVTDRRDVVFQERDLPGSFPGHGQVVGHSKLSRVEEPTEIPGPTPSLEQFWNKYSTSSMHSEAMATQDTVGAMQQGSEGVRSSKEIVVGTPGLPALQSLERAEEAGASAPEVCTLRIKSESGEQMYVIKMLFSETIGDLRLHLAHARGGDSDSYEIISTFPQRVYADNSRSLQECGLIPSASLLLRRRDPFPPEGTGLQTA
SIO_010081: UBXN11
subclass of: SO_0000673
so part of: UBXN11
location: join(237130..237213,237980..238034,238999..239075,239554..239665,241033..241250,241921..241998,243230..243350,244159..244259,244476..244543,245208..245354,245941..246106)
location: region:237130-246106:1
so has part: feature:237130-237213:1:exon
so has part: feature:237980-238034:1:exon
so has part: feature:238999-239075:1:exon
so has part: feature:239554-239665:1:exon
so has part: feature:241033-241250:1:exon
so has part: feature:241921-241998:1:exon
so has part: feature:243230-243350:1:exon
so has part: feature:244159-244259:1:exon
so has part: feature:244476-244543:1:exon
so has part: feature:245208-245354:1:exon
so has part: feature:245941-246106:1:exon

XP_019478312.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:237130-237213:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:237980-238034:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:238999-239075:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:239554-239665:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:241033-241250:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:241921-241998:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:243230-243350:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:244159-244259:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:244476-244543:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:245208-245354:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:245941-246106:1:exon

UBXN11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: UBXN11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: UBX domain-containing protein 11 isoform X4
translation: MELMSSMMQKISLLEQKIDKQAQEIQLKDRKIAELEEKMKTLQKGEDGPESSAAEDLETRCLQLQTQVWEMERFLNDYGLIWVGDRHEELEDLESLRDDELLAKRFWKPGEAVVSKHQVDFDLILENVKSLNMLAGDGVSHVEHTPGGARLRQPEPLPLTLYQNGIVMLDGPFRSYEEQSAQQCLQDIMDGYFPSELQARYPDGVPLQVTDRRDVVFQERDLPGSFPGHGQVVGHSKLSRVEEPTEIPGPTPSLEQFWNKYSTSSMHSEAMATQDTVGAMQQGSEGVRSSKEIVVGTPGLPALQSLERAEEAGASAPEVCTLRIKSESGEQMYVIKMLFSETIGDLRLHLAHARGGDSDSYEIISTFPQRVYADNSRSLQECGLIPSASLLLRRRDPFPPEGTGLQTA
SIO_010081: UBXN11
subclass of: SO_0000673
so part of: UBXN11
location: join(237130..237213,237980..238034,238999..239075,239554..239665,241033..241250,241921..241998,243230..243350,244159..244259,244476..244543,245208..245354,245941..246106)
location: region:237130-246106:1
so has part: feature:237130-237213:1:exon
so has part: feature:237980-238034:1:exon
so has part: feature:238999-239075:1:exon
so has part: feature:239554-239665:1:exon
so has part: feature:241033-241250:1:exon
so has part: feature:241921-241998:1:exon
so has part: feature:243230-243350:1:exon
so has part: feature:244159-244259:1:exon
so has part: feature:244476-244543:1:exon
so has part: feature:245208-245354:1:exon
so has part: feature:245941-246106:1:exon

XP_019478314.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:237130-237213:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:237980-238034:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:238999-239075:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:239554-239665:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:241033-241250:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:241921-241998:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:243230-243350:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:244159-244259:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:244476-244543:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:245208-245354:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:245941-246106:1:exon

SH3BGRL3
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: SH3BGRL3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(247714..249575)
location: region:247714-249575:-1
so has part: feature:247714-249575:-1:exon
subclass of: SO_0000010

104914258
type: Gene
SIO_000068: ncbigene

position:247714:-1
position: 247714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:249575:-1
position: 249575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247714-249575:-1:exon

SH3BGRL3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: SH3BGRL3
product: SH3 domain binding glutamate rich protein like 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 222 samples with support for all annotated introns
transcript id: XM_010723236.3
SIO_010081: SH3BGRL3
subclass of: SO_0000673
so part of: SH3BGRL3
location: complement(join(247714..248633,249027..249194,249503..249575))
location: region:247714-249575:-1
so has part: feature:249503-249575:-1:exon
so has part: feature:249027-249194:-1:exon
so has part: feature:247714-248633:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:249503-249575:-1:exon

position:249503:-1
position: 249503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:249027-249194:-1:exon

position:249027:-1
position: 249027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:249194:-1
position: 249194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:247714-248633:-1:exon

position:248633:-1
position: 248633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SH3BGRL3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: SH3BGRL3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SH3 domain-binding glutamic acid-rich-like protein 3
translation: MSALKVYSTSVTGSREIKSQQSEVTRILDGKNIKYELVDISQDNALREEMRAKAGNPKAIPPQIVNGDHYCGDYELFVEAVEQNTLQEFLKLA
SIO_010081: SH3BGRL3
subclass of: SO_0000673
so part of: SH3BGRL3
location: complement(join(248568..248633,249027..249194,249503..249550))
location: region:248568-249550:-1
so has part: feature:249503-249550:-1:exon
so has part: feature:249027-249194:-1:exon
so has part: feature:248568-248633:-1:exon

XP_010721538.1
type: Protein
SIO_000068: ncbiprotein

position:248568:-1
position: 248568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:249550:-1
position: 249550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:249503-249550:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:249027-249194:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:248568-248633:-1:exon

CEP85
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: CEP85
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(249723..262745)
location: region:249723-262745:-1
so has part: feature:249723-262745:-1:exon
subclass of: SO_0000010

100539014
type: Gene
SIO_000068: ncbigene

position:249723:-1
position: 249723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:262745:-1
position: 262745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:249723-262745:-1:exon

CEP85
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: CEP85
product: centrosomal protein 85, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 177 samples with support for all annotated introns
transcript id: XM_003212467.4
SIO_010081: CEP85
subclass of: SO_0000673
so part of: CEP85
location: complement(join(249723..252062,252319..252547,253197..253304,253390..253440,253902..254022,254526..254680,254944..255096,255452..255637,256004..256121,256983..257116,257742..258466,261567..261719,262484..262745))
location: region:249723-262745:-1
so has part: feature:262484-262745:-1:exon
so has part: feature:261567-261719:-1:exon
so has part: feature:257742-258466:-1:exon
so has part: feature:256983-257116:-1:exon
so has part: feature:256004-256121:-1:exon
so has part: feature:255452-255637:-1:exon
so has part: feature:254944-255096:-1:exon
so has part: feature:254526-254680:-1:exon
so has part: feature:253902-254022:-1:exon
so has part: feature:253390-253440:-1:exon
so has part: feature:253197-253304:-1:exon
so has part: feature:252319-252547:-1:exon
so has part: feature:249723-252062:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:262484-262745:-1:exon

position:262484:-1
position: 262484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:261567-261719:-1:exon

position:261567:-1
position: 261567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:261719:-1
position: 261719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:257742-258466:-1:exon

position:257742:-1
position: 257742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:258466:-1
position: 258466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:256983-257116:-1:exon

position:256983:-1
position: 256983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:257116:-1
position: 257116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:256004-256121:-1:exon

position:256004:-1
position: 256004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:256121:-1
position: 256121
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:255452-255637:-1:exon

position:255452:-1
position: 255452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:255637:-1
position: 255637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:254944-255096:-1:exon

position:254944:-1
position: 254944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:255096:-1
position: 255096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:254526-254680:-1:exon

position:254526:-1
position: 254526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:254680:-1
position: 254680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:253902-254022:-1:exon

position:253902:-1
position: 253902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:254022:-1
position: 254022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:253390-253440:-1:exon

position:253390:-1
position: 253390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:253440:-1
position: 253440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:253197-253304:-1:exon

position:253197:-1
position: 253197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:253304:-1
position: 253304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:252319-252547:-1:exon

position:252319:-1
position: 252319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:252547:-1
position: 252547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:249723-252062:-1:exon

position:252062:-1
position: 252062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CEP85
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: CEP85
product: centrosomal protein 85, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 160 samples with support for all annotated introns
transcript id: XM_010723239.3
SIO_010081: CEP85
subclass of: SO_0000673
so part of: CEP85
location: complement(join(249723..252062,252319..252547,253197..253304,253390..253440,253902..254022,254526..254680,254944..255096,255452..255637,256004..256121,256983..257116,257742..258466,261567..261719,262336..262745))
location: region:249723-262745:-1
so has part: feature:262336-262745:-1:exon
so has part: feature:261567-261719:-1:exon
so has part: feature:257742-258466:-1:exon
so has part: feature:256983-257116:-1:exon
so has part: feature:256004-256121:-1:exon
so has part: feature:255452-255637:-1:exon
so has part: feature:254944-255096:-1:exon
so has part: feature:254526-254680:-1:exon
so has part: feature:253902-254022:-1:exon
so has part: feature:253390-253440:-1:exon
so has part: feature:253197-253304:-1:exon
so has part: feature:252319-252547:-1:exon
so has part: feature:249723-252062:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:262336-262745:-1:exon

position:262336:-1
position: 262336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:261567-261719:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:257742-258466:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:256983-257116:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:256004-256121:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:255452-255637:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:254944-255096:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:254526-254680:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:253902-254022:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:253390-253440:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:253197-253304:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:252319-252547:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:249723-252062:-1:exon

CEP85
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: CEP85
product: centrosomal protein 85, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XM_010723242.3
SIO_010081: CEP85
subclass of: SO_0000673
so part of: CEP85
location: complement(join(249723..252062,252319..252547,253197..253304,253390..253440,253902..254022,254526..254680,254944..255096,255452..255637,256004..256121,256983..257116,257742..258466,258937..259089))
location: region:249723-259089:-1
so has part: feature:258937-259089:-1:exon
so has part: feature:257742-258466:-1:exon
so has part: feature:256983-257116:-1:exon
so has part: feature:256004-256121:-1:exon
so has part: feature:255452-255637:-1:exon
so has part: feature:254944-255096:-1:exon
so has part: feature:254526-254680:-1:exon
so has part: feature:253902-254022:-1:exon
so has part: feature:253390-253440:-1:exon
so has part: feature:253197-253304:-1:exon
so has part: feature:252319-252547:-1:exon
so has part: feature:249723-252062:-1:exon

position:259089:-1
position: 259089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:258937-259089:-1:exon

position:258937:-1
position: 258937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:257742-258466:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:256983-257116:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:256004-256121:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:255452-255637:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:254944-255096:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:254526-254680:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:253902-254022:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:253390-253440:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:253197-253304:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:252319-252547:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:249723-252062:-1:exon

CEP85
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: CEP85
product: centrosomal protein 85, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_010723240.3
SIO_010081: CEP85
subclass of: SO_0000673
so part of: CEP85
location: complement(join(249723..252062,252319..252547,253197..253304,253390..253440,253902..254022,254526..254680,254944..255096,255452..255637,256004..256121,256983..257116,257742..258466,258871..259089))
location: region:249723-259089:-1
so has part: feature:258871-259089:-1:exon
so has part: feature:257742-258466:-1:exon
so has part: feature:256983-257116:-1:exon
so has part: feature:256004-256121:-1:exon
so has part: feature:255452-255637:-1:exon
so has part: feature:254944-255096:-1:exon
so has part: feature:254526-254680:-1:exon
so has part: feature:253902-254022:-1:exon
so has part: feature:253390-253440:-1:exon
so has part: feature:253197-253304:-1:exon
so has part: feature:252319-252547:-1:exon
so has part: feature:249723-252062:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:258871-259089:-1:exon

position:258871:-1
position: 258871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:257742-258466:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:256983-257116:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:256004-256121:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:255452-255637:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:254944-255096:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:254526-254680:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:253902-254022:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:253390-253440:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:253197-253304:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:252319-252547:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:249723-252062:-1:exon

CEP85
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: CEP85
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: centrosomal protein of 85 kDa isoform X1
translation: MAALQKQPELRLQRGDPLDPSTAQKSHFSETDWKTPMLSVKFQSRTSRCSSMADSGDVGIGTSCSDSTEDFCSSSNGSSFQPIKTQVTIPTAHVMPSTLGASPSKLCSAGEQSCLQSTSKTAVPGSASEHAGLLRNGDFNAGKSSQLPHRDLLRLYGTSGENGFEQSWRPGSDHVRTEDTWKFDTPAIERTLNQSLFLDSLCADPLQRFQKFNPNSGAAEAGGDHYKVLPEIKQSAGANGACESQDGMWPGGSKLMPTGLQTNNFFPKPITPSSLAWMQETCTLHPHERVCELSAWKQQLDNVRLQIEQMQLQNGGACHHPSMYSPPLPTLDPAQWINILNSHENLLKEKELLIDRQRQHISQLEQKVRESELQVHSALLGCPAPYGDVYMLRMQELQRENTFLRAQFTEKTESLSKEKIELERKLAAAEVDAKLIQETLKENMQKYAEDLKKQEERIKGREKHINNLKKKCQKEYEQNKERQQRIETLERYLADLPTLEDHQKQSQKLKESELKITALQETVLALETELGDVRAAFREQGMQLENQKHKELELLSTVHSLQDKVQQCVKNAERGPPVQDGEKQKIENDSLKKECDCLRKIVEKQQQKMEQLSLQVKNLEEQVAQEEGTSQALKEEAVRRENALQQLRTAVKELSVQNQDLIEKNLTLQERLRQAELTAQPLPAETARLAQDLHCELASCLQDLQSVYSIVTQRAQGKDPNLSLLLGIRSVQYSAKEKDDLLSPDVLAKKLVEVKQLHKEVEDLRTAISDRYAQDMGDNCITQ
SIO_010081: CEP85
subclass of: SO_0000673
so part of: CEP85
location: complement(join(251899..252062,252319..252547,253197..253304,253390..253440,253902..254022,254526..254680,254944..255096,255452..255637,256004..256121,256983..257116,257742..258466,261567..261719,262484..262538))
location: region:251899-262538:-1
so has part: feature:262484-262538:-1:exon
so has part: feature:261567-261719:-1:exon
so has part: feature:257742-258466:-1:exon
so has part: feature:256983-257116:-1:exon
so has part: feature:256004-256121:-1:exon
so has part: feature:255452-255637:-1:exon
so has part: feature:254944-255096:-1:exon
so has part: feature:254526-254680:-1:exon
so has part: feature:253902-254022:-1:exon
so has part: feature:253390-253440:-1:exon
so has part: feature:253197-253304:-1:exon
so has part: feature:252319-252547:-1:exon
so has part: feature:251899-252062:-1:exon

XP_003212515.1
type: Protein
SIO_000068: ncbiprotein

position:251899:-1
position: 251899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:262538:-1
position: 262538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:262484-262538:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:261567-261719:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:257742-258466:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:256983-257116:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:256004-256121:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:255452-255637:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:254944-255096:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:254526-254680:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:253902-254022:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:253390-253440:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:253197-253304:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:252319-252547:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:251899-252062:-1:exon

CEP85
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: CEP85
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: centrosomal protein of 85 kDa isoform X2
translation: MLSVKFQSRTSRCSSMADSGDVGIGTSCSDSTEDFCSSSNGSSFQPIKTQVTIPTAHVMPSTLGASPSKLCSAGEQSCLQSTSKTAVPGSASEHAGLLRNGDFNAGKSSQLPHRDLLRLYGTSGENGFEQSWRPGSDHVRTEDTWKFDTPAIERTLNQSLFLDSLCADPLQRFQKFNPNSGAAEAGGDHYKVLPEIKQSAGANGACESQDGMWPGGSKLMPTGLQTNNFFPKPITPSSLAWMQETCTLHPHERVCELSAWKQQLDNVRLQIEQMQLQNGGACHHPSMYSPPLPTLDPAQWINILNSHENLLKEKELLIDRQRQHISQLEQKVRESELQVHSALLGCPAPYGDVYMLRMQELQRENTFLRAQFTEKTESLSKEKIELERKLAAAEVDAKLIQETLKENMQKYAEDLKKQEERIKGREKHINNLKKKCQKEYEQNKERQQRIETLERYLADLPTLEDHQKQSQKLKESELKITALQETVLALETELGDVRAAFREQGMQLENQKHKELELLSTVHSLQDKVQQCVKNAERGPPVQDGEKQKIENDSLKKECDCLRKIVEKQQQKMEQLSLQVKNLEEQVAQEEGTSQALKEEAVRRENALQQLRTAVKELSVQNQDLIEKNLTLQERLRQAELTAQPLPAETARLAQDLHCELASCLQDLQSVYSIVTQRAQGKDPNLSLLLGIRSVQYSAKEKDDLLSPDVLAKKLVEVKQLHKEVEDLRTAISDRYAQDMGDNCITQ
SIO_010081: CEP85
subclass of: SO_0000673
so part of: CEP85
location: complement(join(251899..252062,252319..252547,253197..253304,253390..253440,253902..254022,254526..254680,254944..255096,255452..255637,256004..256121,256983..257116,257742..258466,261567..261666))
location: region:251899-261666:-1
so has part: feature:261567-261666:-1:exon
so has part: feature:257742-258466:-1:exon
so has part: feature:256983-257116:-1:exon
so has part: feature:256004-256121:-1:exon
so has part: feature:255452-255637:-1:exon
so has part: feature:254944-255096:-1:exon
so has part: feature:254526-254680:-1:exon
so has part: feature:253902-254022:-1:exon
so has part: feature:253390-253440:-1:exon
so has part: feature:253197-253304:-1:exon
so has part: feature:252319-252547:-1:exon
so has part: feature:251899-252062:-1:exon

XP_010721541.1
type: Protein
SIO_000068: ncbiprotein

position:261666:-1
position: 261666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:261567-261666:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:257742-258466:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:256983-257116:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:256004-256121:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:255452-255637:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:254944-255096:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:254526-254680:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:253902-254022:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:253390-253440:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:253197-253304:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:252319-252547:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:251899-252062:-1:exon

CEP85
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: CEP85
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: centrosomal protein of 85 kDa isoform X3
translation: MPSTLGASPSKLCSAGEQSCLQSTSKTAVPGSASEHAGLLRNGDFNAGKSSQLPHRDLLRLYGTSGENGFEQSWRPGSDHVRTEDTWKFDTPAIERTLNQSLFLDSLCADPLQRFQKFNPNSGAAEAGGDHYKVLPEIKQSAGANGACESQDGMWPGGSKLMPTGLQTNNFFPKPITPSSLAWMQETCTLHPHERVCELSAWKQQLDNVRLQIEQMQLQNGGACHHPSMYSPPLPTLDPAQWINILNSHENLLKEKELLIDRQRQHISQLEQKVRESELQVHSALLGCPAPYGDVYMLRMQELQRENTFLRAQFTEKTESLSKEKIELERKLAAAEVDAKLIQETLKENMQKYAEDLKKQEERIKGREKHINNLKKKCQKEYEQNKERQQRIETLERYLADLPTLEDHQKQSQKLKESELKITALQETVLALETELGDVRAAFREQGMQLENQKHKELELLSTVHSLQDKVQQCVKNAERGPPVQDGEKQKIENDSLKKECDCLRKIVEKQQQKMEQLSLQVKNLEEQVAQEEGTSQALKEEAVRRENALQQLRTAVKELSVQNQDLIEKNLTLQERLRQAELTAQPLPAETARLAQDLHCELASCLQDLQSVYSIVTQRAQGKDPNLSLLLGIRSVQYSAKEKDDLLSPDVLAKKLVEVKQLHKEVEDLRTAISDRYAQDMGDNCITQ
SIO_010081: CEP85
subclass of: SO_0000673
so part of: CEP85
location: complement(join(251899..252062,252319..252547,253197..253304,253390..253440,253902..254022,254526..254680,254944..255096,255452..255637,256004..256121,256983..257116,257742..258392))
location: region:251899-258392:-1
so has part: feature:257742-258392:-1:exon
so has part: feature:256983-257116:-1:exon
so has part: feature:256004-256121:-1:exon
so has part: feature:255452-255637:-1:exon
so has part: feature:254944-255096:-1:exon
so has part: feature:254526-254680:-1:exon
so has part: feature:253902-254022:-1:exon
so has part: feature:253390-253440:-1:exon
so has part: feature:253197-253304:-1:exon
so has part: feature:252319-252547:-1:exon
so has part: feature:251899-252062:-1:exon

XP_010721542.1
type: Protein
SIO_000068: ncbiprotein

position:258392:-1
position: 258392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:257742-258392:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:256983-257116:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:256004-256121:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:255452-255637:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:254944-255096:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:254526-254680:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:253902-254022:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:253390-253440:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:253197-253304:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:252319-252547:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:251899-252062:-1:exon

CEP85
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: CEP85
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: centrosomal protein of 85 kDa isoform X3
translation: MPSTLGASPSKLCSAGEQSCLQSTSKTAVPGSASEHAGLLRNGDFNAGKSSQLPHRDLLRLYGTSGENGFEQSWRPGSDHVRTEDTWKFDTPAIERTLNQSLFLDSLCADPLQRFQKFNPNSGAAEAGGDHYKVLPEIKQSAGANGACESQDGMWPGGSKLMPTGLQTNNFFPKPITPSSLAWMQETCTLHPHERVCELSAWKQQLDNVRLQIEQMQLQNGGACHHPSMYSPPLPTLDPAQWINILNSHENLLKEKELLIDRQRQHISQLEQKVRESELQVHSALLGCPAPYGDVYMLRMQELQRENTFLRAQFTEKTESLSKEKIELERKLAAAEVDAKLIQETLKENMQKYAEDLKKQEERIKGREKHINNLKKKCQKEYEQNKERQQRIETLERYLADLPTLEDHQKQSQKLKESELKITALQETVLALETELGDVRAAFREQGMQLENQKHKELELLSTVHSLQDKVQQCVKNAERGPPVQDGEKQKIENDSLKKECDCLRKIVEKQQQKMEQLSLQVKNLEEQVAQEEGTSQALKEEAVRRENALQQLRTAVKELSVQNQDLIEKNLTLQERLRQAELTAQPLPAETARLAQDLHCELASCLQDLQSVYSIVTQRAQGKDPNLSLLLGIRSVQYSAKEKDDLLSPDVLAKKLVEVKQLHKEVEDLRTAISDRYAQDMGDNCITQ
SIO_010081: CEP85
subclass of: SO_0000673
so part of: CEP85
location: complement(join(251899..252062,252319..252547,253197..253304,253390..253440,253902..254022,254526..254680,254944..255096,255452..255637,256004..256121,256983..257116,257742..258392))
location: region:251899-258392:-1
so has part: feature:257742-258392:-1:exon
so has part: feature:256983-257116:-1:exon
so has part: feature:256004-256121:-1:exon
so has part: feature:255452-255637:-1:exon
so has part: feature:254944-255096:-1:exon
so has part: feature:254526-254680:-1:exon
so has part: feature:253902-254022:-1:exon
so has part: feature:253390-253440:-1:exon
so has part: feature:253197-253304:-1:exon
so has part: feature:252319-252547:-1:exon
so has part: feature:251899-252062:-1:exon

XP_010721544.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:257742-258392:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:256983-257116:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:256004-256121:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:255452-255637:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:254944-255096:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:254526-254680:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:253902-254022:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:253390-253440:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:253197-253304:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:252319-252547:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:251899-252062:-1:exon

CNKSR1
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: CNKSR1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(263142..269269)
location: region:263142-269269:-1
so has part: feature:263142-269269:-1:exon
subclass of: SO_0000010

100539324
type: Gene
SIO_000068: ncbigene

position:263142:-1
position: 263142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:269269:-1
position: 269269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:263142-269269:-1:exon

CNKSR1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: CNKSR1
product: connector enhancer of kinase suppressor of Ras 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
transcript id: XM_010723243.3
SIO_010081: CNKSR1
subclass of: SO_0000673
so part of: CNKSR1
location: complement(join(263142..263628,263701..263882,264155..264257,264332..264396,264563..264636,264718..264789,264887..264960,265041..265213,265306..265336,265501..265646,265723..265835,266163..266242,266371..266490,266657..266725,267098..267157,267234..267449,267534..267575,267769..267853,267932..268122,268764..268921,269239..269269))
location: region:263142-269269:-1
so has part: feature:269239-269269:-1:exon
so has part: feature:268764-268921:-1:exon
so has part: feature:267932-268122:-1:exon
so has part: feature:267769-267853:-1:exon
so has part: feature:267534-267575:-1:exon
so has part: feature:267234-267449:-1:exon
so has part: feature:267098-267157:-1:exon
so has part: feature:266657-266725:-1:exon
so has part: feature:266371-266490:-1:exon
so has part: feature:266163-266242:-1:exon
so has part: feature:265723-265835:-1:exon
so has part: feature:265501-265646:-1:exon
so has part: feature:265306-265336:-1:exon
so has part: feature:265041-265213:-1:exon
so has part: feature:264887-264960:-1:exon
so has part: feature:264718-264789:-1:exon
so has part: feature:264563-264636:-1:exon
so has part: feature:264332-264396:-1:exon
so has part: feature:264155-264257:-1:exon
so has part: feature:263701-263882:-1:exon
so has part: feature:263142-263628:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:269239-269269:-1:exon

position:269239:-1
position: 269239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:268764-268921:-1:exon

position:268764:-1
position: 268764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:268921:-1
position: 268921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:267932-268122:-1:exon

position:267932:-1
position: 267932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:268122:-1
position: 268122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:267769-267853:-1:exon

position:267769:-1
position: 267769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:267853:-1
position: 267853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:267534-267575:-1:exon

position:267534:-1
position: 267534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:267575:-1
position: 267575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:267234-267449:-1:exon

position:267234:-1
position: 267234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:267449:-1
position: 267449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:267098-267157:-1:exon

position:267098:-1
position: 267098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:267157:-1
position: 267157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:266657-266725:-1:exon

position:266657:-1
position: 266657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:266725:-1
position: 266725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:266371-266490:-1:exon

position:266371:-1
position: 266371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:266490:-1
position: 266490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:266163-266242:-1:exon

position:266163:-1
position: 266163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:266242:-1
position: 266242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:265723-265835:-1:exon

position:265723:-1
position: 265723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:265835:-1
position: 265835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:265501-265646:-1:exon

position:265501:-1
position: 265501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:265646:-1
position: 265646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:265306-265336:-1:exon

position:265306:-1
position: 265306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:265336:-1
position: 265336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:265041-265213:-1:exon

position:265041:-1
position: 265041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:265213:-1
position: 265213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:264887-264960:-1:exon

position:264887:-1
position: 264887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:264960:-1
position: 264960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:264718-264789:-1:exon

position:264718:-1
position: 264718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:264789:-1
position: 264789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:264563-264636:-1:exon

position:264563:-1
position: 264563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:264636:-1
position: 264636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:264332-264396:-1:exon

position:264332:-1
position: 264332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:264396:-1
position: 264396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:264155-264257:-1:exon

position:264155:-1
position: 264155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:264257:-1
position: 264257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:263701-263882:-1:exon

position:263701:-1
position: 263701
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:263882:-1
position: 263882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:263142-263628:-1:exon

position:263628:-1
position: 263628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CNKSR1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: CNKSR1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: connector enhancer of kinase suppressor of ras 1
translation: MRGLDAAVQGYPFEEWGLAGTELLRLSEGALEALGVWRVGHQELLLEAVEQLRALDTELASTSLRTLTERLRELAQCTETVVLEGSPGGATPQPTPMALLACVIDLIGAAKRLFSWLNRYLFSTLNDFSSTRDIVLLCARLVEVLQMDCSTAEKNNQILFICQHIIGICESIVGCSPPALLDRRAMLQHVELALPLTPCNGPPDSATTPMLPPGLWGSPPASPSTPMLPYNLLGLEITSTSSCLHFVSMTNLEALAVHGGCILPGDEIVQVNEQVVVGWTHINLVKKLLEKASGVSLVLKKVPLSLPGSPLSTRQQVPGALLDAVDLPKSSECPSSPSSPASSTTADVDSGPDPTTDEDEHSTSLRREDVGELQLAALSFGAGEDVVWEASTPQGTPNSLCALQPCTAEFRPTVAPRAKSAEPSQTPGEGSPVTGRRPKGVATRLSRRRVSCRDLGRVDCDGWLLKKKDHVGFMAQKWKRCWFVLKGHTLYWYNHPNDDKAAGLINVATYNLESTREQKKKYVFQLSHEKYKPFVFAAETLADLSMWVSHLITAKTKHALAHQPVPHREEDCYSETEAEDPDDESPRPGFDLPKKRLQNTPEKAQLFQTSGESSSPQSSPQPHSPVEPCEEDLESLMWCLRQGGVSLIGRQRFLTQEQCRKSFIRRNKNPRINEKVHAVRALQSTLKAKLAELQALEQLLDDAALTSEKFQRWKEEHQDLYQELQEWWARQQGQDSGGGHEAEQRPSAGAAEP
SIO_010081: CNKSR1
subclass of: SO_0000673
so part of: CNKSR1
location: complement(join(263428..263628,263701..263882,264155..264257,264332..264396,264563..264636,264718..264789,264887..264960,265041..265213,265306..265336,265501..265646,265723..265835,266163..266242,266371..266490,266657..266725,267098..267157,267234..267449,267534..267575,267769..267853,267932..268122,268764..268921,269239..269245))
location: region:263428-269245:-1
so has part: feature:269239-269245:-1:exon
so has part: feature:268764-268921:-1:exon
so has part: feature:267932-268122:-1:exon
so has part: feature:267769-267853:-1:exon
so has part: feature:267534-267575:-1:exon
so has part: feature:267234-267449:-1:exon
so has part: feature:267098-267157:-1:exon
so has part: feature:266657-266725:-1:exon
so has part: feature:266371-266490:-1:exon
so has part: feature:266163-266242:-1:exon
so has part: feature:265723-265835:-1:exon
so has part: feature:265501-265646:-1:exon
so has part: feature:265306-265336:-1:exon
so has part: feature:265041-265213:-1:exon
so has part: feature:264887-264960:-1:exon
so has part: feature:264718-264789:-1:exon
so has part: feature:264563-264636:-1:exon
so has part: feature:264332-264396:-1:exon
so has part: feature:264155-264257:-1:exon
so has part: feature:263701-263882:-1:exon
so has part: feature:263428-263628:-1:exon

XP_010721545.1
type: Protein
SIO_000068: ncbiprotein

position:263428:-1
position: 263428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:269245:-1
position: 269245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:269239-269245:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:268764-268921:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:267932-268122:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:267769-267853:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:267534-267575:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:267234-267449:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:267098-267157:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:266657-266725:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:266371-266490:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:266163-266242:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:265723-265835:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:265501-265646:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:265306-265336:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:265041-265213:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:264887-264960:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:264718-264789:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:264563-264636:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:264332-264396:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:264155-264257:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:263701-263882:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:263428-263628:-1:exon

ZNF593
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: ZNF593
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(271480..272710)
location: region:271480-272710:-1
so has part: feature:271480-272710:-1:exon
subclass of: SO_0000010

100539479
type: Gene
SIO_000068: ncbigene

position:271480:-1
position: 271480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:272710:-1
position: 272710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:271480-272710:-1:exon

ZNF593
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: ZNF593
product: zinc finger protein 593
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 222 samples with support for all annotated introns
transcript id: XM_010723244.2
SIO_010081: ZNF593
subclass of: SO_0000673
so part of: ZNF593
location: complement(join(271480..271857,271968..272030,272487..272710))
location: region:271480-272710:-1
so has part: feature:272487-272710:-1:exon
so has part: feature:271968-272030:-1:exon
so has part: feature:271480-271857:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:272487-272710:-1:exon

position:272487:-1
position: 272487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:271968-272030:-1:exon

position:271968:-1
position: 271968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:272030:-1
position: 272030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:271480-271857:-1:exon

position:271857:-1
position: 271857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ZNF593
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: ZNF593
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 593
translation: MSPRSSRRTGAHRAHSLARQAKTKRRRRDLDEIHADLEPGRAARLLRQEPDPDLPGCAQFYCLHCARYFVDLTSMKEHFRSKVHKKRLKQLSEEPYTQEEAERAAGMGSYIPPKKVHVETQPLDEVVEMEASS
SIO_010081: ZNF593
subclass of: SO_0000673
so part of: ZNF593
location: complement(join(271716..271857,271968..272030,272487..272683))
location: region:271716-272683:-1
so has part: feature:272487-272683:-1:exon
so has part: feature:271968-272030:-1:exon
so has part: feature:271716-271857:-1:exon

XP_010721546.1
type: Protein
SIO_000068: ncbiprotein

position:271716:-1
position: 271716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:272683:-1
position: 272683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:272487-272683:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:271968-272030:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:271716-271857:-1:exon

MATN1
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: MATN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(274681..291501)
location: region:274681-291501:-1
so has part: feature:274681-291501:-1:exon
subclass of: SO_0000010

100539170
type: Gene
SIO_000068: ncbigene

position:274681:-1
position: 274681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:291501:-1
position: 291501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:274681-291501:-1:exon

MATN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: MATN1
product: matrilin 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_003212468.4
SIO_010081: MATN1
subclass of: SO_0000673
so part of: MATN1
location: complement(join(274681..275987,278858..278938,279479..279631,280821..281234,281548..281673,283843..284065,288525..288871,291395..291501))
location: region:274681-291501:-1
so has part: feature:291395-291501:-1:exon
so has part: feature:288525-288871:-1:exon
so has part: feature:283843-284065:-1:exon
so has part: feature:281548-281673:-1:exon
so has part: feature:280821-281234:-1:exon
so has part: feature:279479-279631:-1:exon
so has part: feature:278858-278938:-1:exon
so has part: feature:274681-275987:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:291395-291501:-1:exon

position:291395:-1
position: 291395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:288525-288871:-1:exon

position:288525:-1
position: 288525
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:288871:-1
position: 288871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:283843-284065:-1:exon

position:283843:-1
position: 283843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:284065:-1
position: 284065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:281548-281673:-1:exon

position:281548:-1
position: 281548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:281673:-1
position: 281673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:280821-281234:-1:exon

position:280821:-1
position: 280821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:281234:-1
position: 281234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:279479-279631:-1:exon

position:279479:-1
position: 279479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:279631:-1
position: 279631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:278858-278938:-1:exon

position:278858:-1
position: 278858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:278938:-1
position: 278938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:274681-275987:-1:exon

position:275987:-1
position: 275987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MATN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: MATN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cartilage matrix protein
translation: MDRIFSTLPLSLLLLLQSCGVWGAPPQSRGTLCRTKPTDLVFIIDSSRSVRPQEFEKVKVFLSRVIEGLDVGPNSTRVGVINYASAVKNEFSLKTHQTKAGLLQAVRRIEPLSTGTMTGLAIQFAISRAFSDAEGARLRSSNINKVAIVVTDGRPQDGVQDVSARARQAGIEIFAIGVGRVDMHTLRQIASEPLDDHVDYVESYSVIEKLTHKFQEAFCVVSDLCATGDHDCEQICISTPGSYKCACKEGFTLNSDGKTCSACSGGSGSALDLVFLIDGSKSVRPENFELVKKFINQIVESLEVSEKQAQVGLVQYSSSVRQEFPLGQFKNKKDIKAAVKKMAYMEKGTMTGQALKYLVDNSFSIANGARPGVPKVGIVFTDGRSQDYITDAAKKAKDLGFRMFAVGVGNAVEDELREIASEPVAEHYFYTADFRTISNIGKKLQMKICVEEDPCECKSIVKFQTKVEELINTLQRKLEAVAKRIEALENKII
SIO_010081: MATN1
subclass of: SO_0000673
so part of: MATN1
location: complement(join(275938..275987,278858..278938,279479..279631,280821..281234,281548..281673,283843..284065,288525..288871,291395..291482))
location: region:275938-291482:-1
so has part: feature:291395-291482:-1:exon
so has part: feature:288525-288871:-1:exon
so has part: feature:283843-284065:-1:exon
so has part: feature:281548-281673:-1:exon
so has part: feature:280821-281234:-1:exon
so has part: feature:279479-279631:-1:exon
so has part: feature:278858-278938:-1:exon
so has part: feature:275938-275987:-1:exon

XP_003212516.1
type: Protein
SIO_000068: ncbiprotein

position:275938:-1
position: 275938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:291482:-1
position: 291482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:291395-291482:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:288525-288871:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:283843-284065:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:281548-281673:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:280821-281234:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:279479-279631:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:278858-278938:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:275938-275987:-1:exon

LAPTM5
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LAPTM5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(299682..314557)
location: region:299682-314557:-1
so has part: feature:299682-314557:-1:exon
subclass of: SO_0000010

100539631
type: Gene
SIO_000068: ncbigene

position:299682:-1
position: 299682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:314557:-1
position: 314557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:299682-314557:-1:exon

LAPTM5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LAPTM5
product: lysosomal protein transmembrane 5, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 188 samples with support for all annotated introns
transcript id: XM_010723245.3
SIO_010081: LAPTM5
subclass of: SO_0000673
so part of: LAPTM5
location: complement(join(299682..300469,301072..301164,303048..303143,303220..303342,303830..303958,304602..304678,309383..309476,314381..314557))
location: region:299682-314557:-1
so has part: feature:314381-314557:-1:exon
so has part: feature:309383-309476:-1:exon
so has part: feature:304602-304678:-1:exon
so has part: feature:303830-303958:-1:exon
so has part: feature:303220-303342:-1:exon
so has part: feature:303048-303143:-1:exon
so has part: feature:301072-301164:-1:exon
so has part: feature:299682-300469:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:314381-314557:-1:exon

position:314381:-1
position: 314381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:309383-309476:-1:exon

position:309383:-1
position: 309383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:309476:-1
position: 309476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:304602-304678:-1:exon

position:304602:-1
position: 304602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:304678:-1
position: 304678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:303830-303958:-1:exon

position:303830:-1
position: 303830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:303958:-1
position: 303958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:303220-303342:-1:exon

position:303220:-1
position: 303220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:303342:-1
position: 303342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:303048-303143:-1:exon

position:303048:-1
position: 303048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:303143:-1
position: 303143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:301072-301164:-1:exon

position:301072:-1
position: 301072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:301164:-1
position: 301164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:299682-300469:-1:exon

position:300469:-1
position: 300469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LAPTM5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LAPTM5
product: lysosomal protein transmembrane 5, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 200 samples with support for all annotated introns
transcript id: XM_003212471.4
SIO_010081: LAPTM5
subclass of: SO_0000673
so part of: LAPTM5
location: complement(join(299682..300469,301072..301164,303048..303143,303220..303345,303830..303958,304602..304678,309383..309476,314381..314556))
location: region:299682-314556:-1
so has part: feature:314381-314556:-1:exon
so has part: feature:309383-309476:-1:exon
so has part: feature:304602-304678:-1:exon
so has part: feature:303830-303958:-1:exon
so has part: feature:303220-303345:-1:exon
so has part: feature:303048-303143:-1:exon
so has part: feature:301072-301164:-1:exon
so has part: feature:299682-300469:-1:exon

position:314556:-1
position: 314556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:314381-314556:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:309383-309476:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:304602-304678:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:303830-303958:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:303220-303345:-1:exon

position:303345:-1
position: 303345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:303048-303143:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:301072-301164:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:299682-300469:-1:exon

LAPTM5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LAPTM5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lysosomal-associated transmembrane protein 5 isoform X2
translation: MTAQTKHPKCCFFNIKTATLALGVFHMVMSILLLIEYSLEVASGKGYCKDLDKDYYRIADVTTSFLLIIMLFVISFNLLFGVVKKRERLLIPFLALQVMDFLLSLLTMFSSYIQVPAMVSVSSLRHTEHLKTPFLALQLLDFCLSILTLCSSYMEVPTYLSLKSADNRGFMPALEKLPTEEYAKVMVTFTVAFIAVLFLKAYMFKCVLSCFKYIKASKREELKADLKAVEKAVLPSYEEALELPSKECPPPYVAV
SIO_010081: LAPTM5
subclass of: SO_0000673
so part of: LAPTM5
location: complement(join(300395..300469,301072..301164,303048..303143,303220..303342,303830..303958,304602..304678,309383..309476,314381..314461))
location: region:300395-314461:-1
so has part: feature:314381-314461:-1:exon
so has part: feature:309383-309476:-1:exon
so has part: feature:304602-304678:-1:exon
so has part: feature:303830-303958:-1:exon
so has part: feature:303220-303342:-1:exon
so has part: feature:303048-303143:-1:exon
so has part: feature:301072-301164:-1:exon
so has part: feature:300395-300469:-1:exon

XP_010721547.1
type: Protein
SIO_000068: ncbiprotein

position:300395:-1
position: 300395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:314461:-1
position: 314461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:314381-314461:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:309383-309476:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:304602-304678:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:303830-303958:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:303220-303342:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:303048-303143:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:301072-301164:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:300395-300469:-1:exon

LAPTM5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LAPTM5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lysosomal-associated transmembrane protein 5 isoform X1
translation: MTAQTKHPKCCFFNIKTATLALGVFHMVMSILLLIEYSLEVASGKGYCKDLDKDYYRIADVTTSFLLIIMLFVISFNLLFGVVKKRERLLIPFLALQVMDFLLSLLTMFSSYIQVPAMVSVSSLRHTQEHLKTPFLALQLLDFCLSILTLCSSYMEVPTYLSLKSADNRGFMPALEKLPTEEYAKVMVTFTVAFIAVLFLKAYMFKCVLSCFKYIKASKREELKADLKAVEKAVLPSYEEALELPSKECPPPYVAV
SIO_010081: LAPTM5
subclass of: SO_0000673
so part of: LAPTM5
location: complement(join(300395..300469,301072..301164,303048..303143,303220..303345,303830..303958,304602..304678,309383..309476,314381..314461))
location: region:300395-314461:-1
so has part: feature:314381-314461:-1:exon
so has part: feature:309383-309476:-1:exon
so has part: feature:304602-304678:-1:exon
so has part: feature:303830-303958:-1:exon
so has part: feature:303220-303345:-1:exon
so has part: feature:303048-303143:-1:exon
so has part: feature:301072-301164:-1:exon
so has part: feature:300395-300469:-1:exon

XP_003212519.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:314381-314461:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:309383-309476:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:304602-304678:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:303830-303958:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:303220-303345:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:303048-303143:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:301072-301164:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:300395-300469:-1:exon

LOC104914273
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914273
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 316465..319191
location: region:316465-319191:1
so has part: feature:316465-319191:1:exon
subclass of: SO_0000010

104914273
type: Gene
SIO_000068: ncbigene

position:316465:1
position: 316465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:319191:1
position: 319191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316465-319191:1:exon

LOC104914273
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914273
product: tubulin-folding cofactor B-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_010723284.3
SIO_010081: LOC104914273
subclass of: SO_0000673
so part of: LOC104914273
location: join(316465..316615,318373..318564,318684..319191)
location: region:316465-319191:1
so has part: feature:316465-316615:1:exon
so has part: feature:318373-318564:1:exon
so has part: feature:318684-319191:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:316465-316615:1:exon

position:316615:1
position: 316615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:318373-318564:1:exon

position:318373:1
position: 318373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:318564:1
position: 318564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:318684-319191:1:exon

position:318684:1
position: 318684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC104914273
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914273
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tubulin-folding cofactor B-like
translation: MGVLLQETTCIFLPSYAKAKPGSSWENVPTRPPSLKIVFHHETLLCLLRLHSVRSFLRRRRWGRFDADAEQQRGEEEEQRRAEEAELAATMSPGCRCLVSLPGQPQHRGTIAYVGLTDFKPGHWVGVRYDEPVGKHDGRYGALRVTWGPQTAHRWHLGSSRVPRGPQMAPCVLKGSYWSPMMAEVSPRVPK
SIO_010081: LOC104914273
subclass of: SO_0000673
so part of: LOC104914273
location: join(316465..316615,318373..318564,318684..318916)
location: region:316465-318916:1
so has part: feature:316465-316615:1:exon
so has part: feature:318373-318564:1:exon
so has part: feature:318684-318916:1:exon

XP_010721586.2
type: Protein
SIO_000068: ncbiprotein

position:318916:1
position: 318916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316465-316615:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:318373-318564:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:318684-318916:1:exon

assembly_gap
type: Assembly Gap
subclass of: SO_0000730
RO_0002162: 9103
estimated length: unknown
gap type: between scaffolds
so part of: sequence
location: 318271..318370
location: region:318271-318370:1
so has part: feature:318271-318370:1:region

position:318271:1
position: 318271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:318370:1
position: 318370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:318271-318370:1:region

WASF2
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: WASF2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(326888..336096)
location: region:326888-336096:-1
so has part: feature:326888-336096:-1:exon
subclass of: SO_0000010

100545294
type: Gene
SIO_000068: ncbigene

position:326888:-1
position: 326888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:336096:-1
position: 336096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:326888-336096:-1:exon

WASF2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: WASF2
product: WASP family member 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 120 samples with support for all annotated introns
transcript id: XM_010723247.3
SIO_010081: WASF2
subclass of: SO_0000673
so part of: WASF2
location: complement(join(326888..327047,328472..328602,329692..329809,330896..331049,331545..331679,335528..335681,335988..336096))
location: region:326888-336096:-1
so has part: feature:335988-336096:-1:exon
so has part: feature:335528-335681:-1:exon
so has part: feature:331545-331679:-1:exon
so has part: feature:330896-331049:-1:exon
so has part: feature:329692-329809:-1:exon
so has part: feature:328472-328602:-1:exon
so has part: feature:326888-327047:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:335988-336096:-1:exon

position:335988:-1
position: 335988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:335528-335681:-1:exon

position:335528:-1
position: 335528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:335681:-1
position: 335681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:331545-331679:-1:exon

position:331545:-1
position: 331545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:331679:-1
position: 331679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:330896-331049:-1:exon

position:330896:-1
position: 330896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:331049:-1
position: 331049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:329692-329809:-1:exon

position:329692:-1
position: 329692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:329809:-1
position: 329809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:328472-328602:-1:exon

position:328472:-1
position: 328472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:328602:-1
position: 328602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:326888-327047:-1:exon

position:327047:-1
position: 327047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

WASF2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: WASF2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: wiskott-Aldrich syndrome protein family member 2
translation: MPLVTRNIEPRHLCRQTLPSVRSELECMTNITLANVIRQLGSLSKFAEDIFGELFTQANTFASRMSVLVERVDRLQVKVTQLDPKEEEVSLQGINTRKAFKSSTTQDQKLFDRDSLPVPVLETYGTCNTPPPLNILSPYRDDGKEALKFYTDPSYFFDLWKEKMLQDTKDIMKEKRKHRKEKKENPNRGNVNPRKIKTRKEEWEKLKMGQEFVEIKDKHGPAGYPSNMVYQNGSIGSNESMDVNCYPPPPQTDSIVPPPPSFPDDSLPPPPVEFR
SIO_010081: WASF2
subclass of: SO_0000673
so part of: WASF2
location: complement(join(326888..327047,328472..328602,329692..329809,330896..331049,331545..331679,335528..335657))
location: region:326888-335657:-1
so has part: feature:335528-335657:-1:exon
so has part: feature:331545-331679:-1:exon
so has part: feature:330896-331049:-1:exon
so has part: feature:329692-329809:-1:exon
so has part: feature:328472-328602:-1:exon
so has part: feature:326888-327047:-1:exon

XP_010721549.1
type: Protein
SIO_000068: ncbiprotein

position:335657:-1
position: 335657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:335528-335657:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:331545-331679:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:330896-331049:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:329692-329809:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:328472-328602:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:326888-327047:-1:exon

LOC104914261
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914261
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(351377..355920)
location: region:351377-355920:-1
so has part: feature:351377-355920:-1:exon
subclass of: SO_0000011

104914261
type: Gene
SIO_000068: ncbigene

position:351377:-1
position: 351377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:355920:-1
position: 355920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:351377-355920:-1:exon

LOC104914261
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC104914261
product: uncharacterized LOC104914261
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 222 samples with support for all annotated introns
transcript id: XR_795929.2
SIO_010081: LOC104914261
subclass of: SO_0000673
so part of: LOC104914261
location: complement(join(351377..355308,355778..355920))
location: region:351377-355920:-1
so has part: feature:355778-355920:-1:exon
so has part: feature:351377-355308:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:355778-355920:-1:exon

position:355778:-1
position: 355778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:351377-355308:-1:exon

position:355308:-1
position: 355308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CD164L2
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: CD164L2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(356033..>357009)
location: region:356033-357009:-1
so has part: feature:356033-357009:-1:exon
subclass of: SO_0000010

104914274
type: Gene
SIO_000068: ncbigene

position:356033:-1
position: 356033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:357009:-1
position: 357009
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:356033-357009:-1:exon

CD164L2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: CD164L2
product: CD164 molecule like 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XM_019622775.1
SIO_010081: CD164L2
subclass of: SO_0000673
so part of: CD164L2
location: complement(join(356033..356346,356702..>357009))
location: region:356033-357009:-1
so has part: feature:356702-357009:-1:exon
so has part: feature:356033-356346:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:356702-357009:-1:exon

position:356702:-1
position: 356702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:356033-356346:-1:exon

position:356346:-1
position: 356346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CD164L2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: CD164L2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CD164 sialomucin-like 2 protein
translation: PELQLCIIDASRCSSNGRGRALLSRWTPSFRRGVGLGSVPVAPRCPIGSSTTRAPLTDSPEFQPPGFDTASFVGGIVLVLSVQAVLFFILKFIKSKDSSYQTLEDNQ
SIO_010081: CD164L2
subclass of: SO_0000673
so part of: CD164L2
location: complement(join(356331..356346,356702..>357009))
location: region:356331-357009:-1
so has part: feature:356702-357009:-1:exon
so has part: feature:356331-356346:-1:exon

XP_019478320.1
type: Protein
SIO_000068: ncbiprotein

position:356331:-1
position: 356331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:356702-357009:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:356331-356346:-1:exon

MAP3K6
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: MAP3K6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(362342..370503)
location: region:362342-370503:-1
so has part: feature:362342-370503:-1:exon
subclass of: SO_0000010

104914275
type: Gene
SIO_000068: ncbigene

position:362342:-1
position: 362342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:370503:-1
position: 370503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:362342-370503:-1:exon

MAP3K6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: MAP3K6
product: mitogen-activated protein kinase kinase kinase 6
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 13 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
transcript id: XM_031556784.1
SIO_010081: MAP3K6
subclass of: SO_0000673
so part of: MAP3K6
location: complement(join(362342..362520,362603..362679,362766..363017,363102..363210,363308..363413,364672..364857,364931..365084,365459..365606,365681..365861,365942..366099,366180..366285,366372..366508,366587..366714,366787..366920,366991..367069,367252..367347,367438..367487,367562..367669,367739..367888,367987..368146,368232..368344,368627..368797,368865..368971,369089..369257,369355..369539,369853..369876,370366..370503))
location: region:362342-370503:-1
so has part: feature:370366-370503:-1:exon
so has part: feature:369853-369876:-1:exon
so has part: feature:369355-369539:-1:exon
so has part: feature:369089-369257:-1:exon
so has part: feature:368865-368971:-1:exon
so has part: feature:368627-368797:-1:exon
so has part: feature:368232-368344:-1:exon
so has part: feature:367987-368146:-1:exon
so has part: feature:367739-367888:-1:exon
so has part: feature:367562-367669:-1:exon
so has part: feature:367438-367487:-1:exon
so has part: feature:367252-367347:-1:exon
so has part: feature:366991-367069:-1:exon
so has part: feature:366787-366920:-1:exon
so has part: feature:366587-366714:-1:exon
so has part: feature:366372-366508:-1:exon
so has part: feature:366180-366285:-1:exon
so has part: feature:365942-366099:-1:exon
so has part: feature:365681-365861:-1:exon
so has part: feature:365459-365606:-1:exon
so has part: feature:364931-365084:-1:exon
so has part: feature:364672-364857:-1:exon
so has part: feature:363308-363413:-1:exon
so has part: feature:363102-363210:-1:exon
so has part: feature:362766-363017:-1:exon
so has part: feature:362603-362679:-1:exon
so has part: feature:362342-362520:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:370366-370503:-1:exon

position:370366:-1
position: 370366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:369853-369876:-1:exon

position:369853:-1
position: 369853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:369876:-1
position: 369876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:369355-369539:-1:exon

position:369355:-1
position: 369355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:369539:-1
position: 369539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:369089-369257:-1:exon

position:369089:-1
position: 369089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:369257:-1
position: 369257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:368865-368971:-1:exon

position:368865:-1
position: 368865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:368971:-1
position: 368971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:368627-368797:-1:exon

position:368627:-1
position: 368627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:368797:-1
position: 368797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:368232-368344:-1:exon

position:368232:-1
position: 368232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:368344:-1
position: 368344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:367987-368146:-1:exon

position:367987:-1
position: 367987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:368146:-1
position: 368146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:367739-367888:-1:exon

position:367739:-1
position: 367739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:367888:-1
position: 367888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:367562-367669:-1:exon

position:367562:-1
position: 367562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:367669:-1
position: 367669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:367438-367487:-1:exon

position:367438:-1
position: 367438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:367487:-1
position: 367487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:367252-367347:-1:exon

position:367252:-1
position: 367252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:367347:-1
position: 367347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:366991-367069:-1:exon

position:366991:-1
position: 366991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:367069:-1
position: 367069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:366787-366920:-1:exon

position:366787:-1
position: 366787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:366920:-1
position: 366920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:366587-366714:-1:exon

position:366587:-1
position: 366587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:366714:-1
position: 366714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:366372-366508:-1:exon

position:366372:-1
position: 366372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:366508:-1
position: 366508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:366180-366285:-1:exon

position:366180:-1
position: 366180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:366285:-1
position: 366285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:365942-366099:-1:exon

position:365942:-1
position: 365942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:366099:-1
position: 366099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:365681-365861:-1:exon

position:365681:-1
position: 365681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:365861:-1
position: 365861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:365459-365606:-1:exon

position:365459:-1
position: 365459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:365606:-1
position: 365606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:364931-365084:-1:exon

position:364931:-1
position: 364931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:365084:-1
position: 365084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:364672-364857:-1:exon

position:364672:-1
position: 364672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:364857:-1
position: 364857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:363308-363413:-1:exon

position:363308:-1
position: 363308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:363413:-1
position: 363413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:363102-363210:-1:exon

position:363102:-1
position: 363102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:363210:-1
position: 363210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:362766-363017:-1:exon

position:362766:-1
position: 362766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:363017:-1
position: 363017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:362603-362679:-1:exon

position:362603:-1
position: 362603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:362679:-1
position: 362679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:362342-362520:-1:exon

position:362520:-1
position: 362520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MAP3K6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: MAP3K6
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 6
translation: MSHNVLLCCHTVLPALRALQEDICQKNSDLCGSYTFIPYTVTAHGEVLCCENSTEPCPTELPQPSCDAEPFTPLTARLIRLLEAIPTNSCGYFRETLRRDIRRVRELFRGEQLSRELRSIQQRLDSVELLSLDIVVSLLLSYRDAQDYDSIISLVDTLHSLPTCDVAEQPNVRFHYAFALSRRNRAGDREKALSVLLPAVQHRDTAAPDLLCLCGRIYKDMFISSGLTDTEMRDRALYWYSKAFELEPSLHAGINAAVLLVASGHRFDTSLRLQQIGVKLSCLQGRKGSPEELRHYWDVGFCLGAGILANDLGKVIQASEKLYKLNAPGWYLVSVMETFLLYKHFQESPAVPSARQELADXWLGFLLISCQPFVPEPRCPVLVLEHGKVLQPARLAVRSAAEEPAVMLTLVCPTEEKAVSSWKFPPAAIRGVSICKSDERGCFLYVIHTEEDFQLYFPSQQHCQWFCERVQSFLAEQGGEELPSSTQPILEYSYECTESGERVVLGRGTYGVVYAGRCLGTQVRIAIKEIPERDSRFSQPLHEELALHKRLRHRNIVRYLGSISQDGFIKIFMEEVPGGSLSSLLRSKWGPLKDNEPTIIFYTRQILNGLSYLHDNHIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGISPSAGSFTGTLQYMAPEIIDQGPWGYGKPADIWSLGCTVIEMATGRPPFYELGSPQAAMFKVGMFKAHPEVPGSMSDEAKAFILRCFEADPAMRATASALLQDPFLAGARRARSQREPTARGGSPRWERRDGDAVGTDGTEGCPAIGVGEGGTTGSTPLPHRHGEAAPGHSSIGSDLTQRSSSPEESGDSFVLQKDIQHRTTLLCILRAEAPGITAALQESQSAVGPRLSSEHIAQLLSCLQSYIQSPQQPRLRRDLLQLQARLREDGIGVQQLQAPLLHFQAVVTRLLRQHHIRPHWVFALDAAISQAVQAALAVLLTELQEDGSEGDGPAESSASQECSVLLAQLRRLRAQTGRLLRQLAEKEQEWQRLARRALCSVDITQPTLPPHRGEQGHPGGDTAVGQRLSASCPEQQPRARADPLLLEWLQQHGTDPSTTATLLAHGYTLRDLLGSATRDDLFYTGMRRGSAYRLWAAIVQHRRDHRHGGTRPSEQ
SIO_010081: MAP3K6
subclass of: SO_0000673
so part of: MAP3K6
location: complement(join(362433..362520,362603..362679,362766..363017,363102..363210,363308..363413,364672..364857,364931..365084,365459..365606,365681..365861,365942..366099,366180..366285,366372..366508,366587..366714,366787..366920,366991..367069,367252..367347,367438..367487,367562..367669,367739..367888,367987..368146,368232..368344,368627..368797,368865..368971,369089..369257,369355..369539,369853..369876,370366..370425))
location: region:362433-370425:-1
so has part: feature:370366-370425:-1:exon
so has part: feature:369853-369876:-1:exon
so has part: feature:369355-369539:-1:exon
so has part: feature:369089-369257:-1:exon
so has part: feature:368865-368971:-1:exon
so has part: feature:368627-368797:-1:exon
so has part: feature:368232-368344:-1:exon
so has part: feature:367987-368146:-1:exon
so has part: feature:367739-367888:-1:exon
so has part: feature:367562-367669:-1:exon
so has part: feature:367438-367487:-1:exon
so has part: feature:367252-367347:-1:exon
so has part: feature:366991-367069:-1:exon
so has part: feature:366787-366920:-1:exon
so has part: feature:366587-366714:-1:exon
so has part: feature:366372-366508:-1:exon
so has part: feature:366180-366285:-1:exon
so has part: feature:365942-366099:-1:exon
so has part: feature:365681-365861:-1:exon
so has part: feature:365459-365606:-1:exon
so has part: feature:364931-365084:-1:exon
so has part: feature:364672-364857:-1:exon
so has part: feature:363308-363413:-1:exon
so has part: feature:363102-363210:-1:exon
so has part: feature:362766-363017:-1:exon
so has part: feature:362603-362679:-1:exon
so has part: feature:362433-362520:-1:exon

XP_031412644.1
type: Protein
SIO_000068: ncbiprotein

position:362433:-1
position: 362433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:370425:-1
position: 370425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:370366-370425:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:369853-369876:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:369355-369539:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:369089-369257:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:368865-368971:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:368627-368797:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:368232-368344:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:367987-368146:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:367739-367888:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:367562-367669:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:367438-367487:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:367252-367347:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:366991-367069:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:366787-366920:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:366587-366714:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:366372-366508:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:366180-366285:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:365942-366099:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:365681-365861:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:365459-365606:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:364931-365084:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:364672-364857:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:363308-363413:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:363102-363210:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:362766-363017:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:362603-362679:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:362433-362520:-1:exon

TMEM222
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: TMEM222
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 371578..379708
location: region:371578-379708:1
so has part: feature:371578-379708:1:exon
subclass of: SO_0000010

100547193
type: Gene
SIO_000068: ncbigene

position:371578:1
position: 371578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:379708:1
position: 379708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:371578-379708:1:exon

TMEM222
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: TMEM222
product: transmembrane protein 222
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_019622717.2
SIO_010081: TMEM222
subclass of: SO_0000673
so part of: TMEM222
location: join(371578..371741,372814..372959,373797..373899,373982..374021,374089..374182,374297..374416,376595..376688,377597..377681,378076..378107,378298..378394,378526..378656,379577..379708)
location: region:371578-379708:1
so has part: feature:371578-371741:1:exon
so has part: feature:372814-372959:1:exon
so has part: feature:373797-373899:1:exon
so has part: feature:373982-374021:1:exon
so has part: feature:374089-374182:1:exon
so has part: feature:374297-374416:1:exon
so has part: feature:376595-376688:1:exon
so has part: feature:377597-377681:1:exon
so has part: feature:378076-378107:1:exon
so has part: feature:378298-378394:1:exon
so has part: feature:378526-378656:1:exon
so has part: feature:379577-379708:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:371578-371741:1:exon

position:371741:1
position: 371741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:372814-372959:1:exon

position:372814:1
position: 372814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:372959:1
position: 372959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:373797-373899:1:exon

position:373797:1
position: 373797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:373899:1
position: 373899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:373982-374021:1:exon

position:373982:1
position: 373982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:374021:1
position: 374021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:374089-374182:1:exon

position:374089:1
position: 374089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:374182:1
position: 374182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:374297-374416:1:exon

position:374297:1
position: 374297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:374416:1
position: 374416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:376595-376688:1:exon

position:376595:1
position: 376595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:376688:1
position: 376688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:377597-377681:1:exon

position:377597:1
position: 377597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:377681:1
position: 377681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:378076-378107:1:exon

position:378076:1
position: 378076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:378107:1
position: 378107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:378298-378394:1:exon

position:378298:1
position: 378298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:378394:1
position: 378394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:378526-378656:1:exon

position:378526:1
position: 378526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:378656:1
position: 378656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:379577-379708:1:exon

position:379577:1
position: 379577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TMEM222
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: TMEM222
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transmembrane protein 222
translation: MEPGPEALLDLSFLTEAERCAIAEVLHRDALLRRAEEGRVSKLRQSVSDPVRLRTLTGEWFCHVRAQRHRNLLGSDLVRASIRRRRRPWGAAELECRLSQGELEAIREWLLEEKEDEEGAREESPNEDGVLAATEPQPKPTAPEGTTVSPSLQQGDVPAGERDGPKEPGDRVDGKPFGTSSVEEDEEEPNPAHSSPGVVQVGWGHVGGWWQCCDSAVLLLADRTGSVQTGKCLPALRCARWLFPIIGHMGICTSTGVIRDFAGPYFVSEDNMAFGKPVKYWKLDPGKVYSSSPNAWDTAVHDASEEYKHRMHNLCCDNCHSHVALALNLMRYDNSTSWNMVKLCFFSLLYGKYVSIGGFVKTWLPFVLFLGAILTVVLTLHLR
SIO_010081: TMEM222
subclass of: SO_0000673
so part of: TMEM222
location: join(371620..371741,372814..372959,373797..373899,373982..374021,374089..374182,374297..374416,376595..376688,377597..377681,378076..378107,378298..378394,378526..378656,379577..379664)
location: region:371620-379664:1
so has part: feature:371620-371741:1:exon
so has part: feature:372814-372959:1:exon
so has part: feature:373797-373899:1:exon
so has part: feature:373982-374021:1:exon
so has part: feature:374089-374182:1:exon
so has part: feature:374297-374416:1:exon
so has part: feature:376595-376688:1:exon
so has part: feature:377597-377681:1:exon
so has part: feature:378076-378107:1:exon
so has part: feature:378298-378394:1:exon
so has part: feature:378526-378656:1:exon
so has part: feature:379577-379664:1:exon

XP_019478262.1
type: Protein
SIO_000068: ncbiprotein

position:371620:1
position: 371620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:379664:1
position: 379664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:371620-371741:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:372814-372959:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:373797-373899:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:373982-374021:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:374089-374182:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:374297-374416:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:376595-376688:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:377597-377681:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:378076-378107:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:378298-378394:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:378526-378656:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:379577-379664:1:exon

LOC104914276
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914276
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 387993..398034
location: region:387993-398034:1
so has part: feature:387993-398034:1:exon
subclass of: SO_0000010

104914276
type: Gene
SIO_000068: ncbigene

position:387993:1
position: 387993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:398034:1
position: 398034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:387993-398034:1:exon

LOC104914276
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914276
product: WD and tetratricopeptide repeats protein 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 9 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031556770.1
SIO_010081: LOC104914276
subclass of: SO_0000673
so part of: LOC104914276
location: join(387993..388032,389293..389389,390572..390745,393394..393629,393974..394136,394552..394744,394899..398034)
location: region:387993-398034:1
so has part: feature:387993-388032:1:exon
so has part: feature:389293-389389:1:exon
so has part: feature:390572-390745:1:exon
so has part: feature:393394-393629:1:exon
so has part: feature:393974-394136:1:exon
so has part: feature:394552-394744:1:exon
so has part: feature:394899-398034:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:387993-388032:1:exon

position:388032:1
position: 388032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:389293-389389:1:exon

position:389293:1
position: 389293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:389389:1
position: 389389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:390572-390745:1:exon

position:390572:1
position: 390572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:390745:1
position: 390745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:393394-393629:1:exon

position:393394:1
position: 393394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:393629:1
position: 393629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:393974-394136:1:exon

position:393974:1
position: 393974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:394136:1
position: 394136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:394552-394744:1:exon

position:394552:1
position: 394552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:394744:1
position: 394744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:394899-398034:1:exon

position:394899:1
position: 394899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC104914276
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914276
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: WD and tetratricopeptide repeats protein 1
translation: MDSGRTAGRVAAHEVQNGKTSTNGVSNGIHLHSNGFRLSEGRAHVSPQVELPPYLERIKQQANEAFACQLWTQAIQLYSKAVQKAPNNAMLYGNRAAAYMKRKWDGDHYDALRDCLKAISLNPCHLKAHFRLARCLFELKYVAEALECLDDFKGKFPEQAHSSACDALDRDINAALFSKSDNGQEGGGPIRLRATGRKDSISEDEMVLRERSYDYKFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDGSFFIWEKETTNLVRVLQGDESIVNCLQPHPSYCFLATSGIDPVVRLWNPRPESETLNGRVVVDMEGASQANQRRMNADPLEVMLLNMGYRITGLTSGGAGGSDDEDSSEGQVQCRPS
SIO_010081: LOC104914276
subclass of: SO_0000673
so part of: LOC104914276
location: join(387993..388032,389293..389389,390572..390745,393394..393629,393974..394136,394552..394744,394899..395096)
location: region:387993-395096:1
so has part: feature:387993-388032:1:exon
so has part: feature:389293-389389:1:exon
so has part: feature:390572-390745:1:exon
so has part: feature:393394-393629:1:exon
so has part: feature:393974-394136:1:exon
so has part: feature:394552-394744:1:exon
so has part: feature:394899-395096:1:exon

XP_031412630.1
type: Protein
SIO_000068: ncbiprotein

position:395096:1
position: 395096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:387993-388032:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:389293-389389:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:390572-390745:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:393394-393629:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:393974-394136:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:394552-394744:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:394899-395096:1:exon

LOC100545547
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC100545547
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 398202..410839
location: region:398202-410839:1
so has part: feature:398202-410839:1:exon
subclass of: SO_0000010

100545547
type: Gene
SIO_000068: ncbigene

position:398202:1
position: 398202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:410839:1
position: 410839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:398202-410839:1:exon

LOC100545547
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC100545547
product: WD and tetratricopeptide repeats protein 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_019622777.2
SIO_010081: LOC100545547
subclass of: SO_0000673
so part of: LOC100545547
location: join(398202..398502,402697..402845,405003..405086,405951..405997,407193..407304,407682..407869,408243..408425,408729..408823,409878..409993,410397..410839)
location: region:398202-410839:1
so has part: feature:398202-398502:1:exon
so has part: feature:402697-402845:1:exon
so has part: feature:405003-405086:1:exon
so has part: feature:405951-405997:1:exon
so has part: feature:407193-407304:1:exon
so has part: feature:407682-407869:1:exon
so has part: feature:408243-408425:1:exon
so has part: feature:408729-408823:1:exon
so has part: feature:409878-409993:1:exon
so has part: feature:410397-410839:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:398202-398502:1:exon

position:398502:1
position: 398502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:402697-402845:1:exon

position:402697:1
position: 402697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:402845:1
position: 402845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:405003-405086:1:exon

position:405003:1
position: 405003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:405086:1
position: 405086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:405951-405997:1:exon

position:405951:1
position: 405951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:405997:1
position: 405997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:407193-407304:1:exon

position:407193:1
position: 407193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:407304:1
position: 407304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:407682-407869:1:exon

position:407682:1
position: 407682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:407869:1
position: 407869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:408243-408425:1:exon

position:408243:1
position: 408243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:408425:1
position: 408425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:408729-408823:1:exon

position:408729:1
position: 408729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:408823:1
position: 408823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:409878-409993:1:exon

position:409878:1
position: 409878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:409993:1
position: 409993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:410397-410839:1:exon

position:410397:1
position: 410397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100545547
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC100545547
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: WD and tetratricopeptide repeats protein 1
translation: MAKANITRDIIHRQIKERGALGFERHYHVTDPFIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANIFSVKFLPHSGDRILITGAADSKVHVHDLTVKETIHMFGDHTNRVKRIATAPMWPNTFWSAAEDGLIRQYDLRENSKRSEVLIDLTEYCGQLVEAKCLTVNPQDNNYLAVGASGPFVRLYDIRMIHNHRKSMKQCPSAGVHTFCDRQKPLPDGAAQYYVAGHLPVKLPDYNNRLRVLVATYVTFSPDGTELLVNMGGEQVYLFDLTYKQRPYTFLLPKKCHTSGGKCDAVIN
SIO_010081: LOC100545547
subclass of: SO_0000673
so part of: LOC100545547
location: join(402798..402845,405003..405086,405951..405997,407193..407304,407682..407869,408243..408425,408729..408823,409878..409993,410397..410498)
location: region:402798-410498:1
so has part: feature:402798-402845:1:exon
so has part: feature:405003-405086:1:exon
so has part: feature:405951-405997:1:exon
so has part: feature:407193-407304:1:exon
so has part: feature:407682-407869:1:exon
so has part: feature:408243-408425:1:exon
so has part: feature:408729-408823:1:exon
so has part: feature:409878-409993:1:exon
so has part: feature:410397-410498:1:exon

XP_019478322.1
type: Protein
SIO_000068: ncbiprotein

position:402798:1
position: 402798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:410498:1
position: 410498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:402798-402845:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:405003-405086:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:405951-405997:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:407193-407304:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:407682-407869:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:408243-408425:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:408729-408823:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:409878-409993:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:410397-410498:1:exon

SLC9A1
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: SLC9A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(422481..430049)
location: region:422481-430049:-1
so has part: feature:422481-430049:-1:exon
subclass of: SO_0000010

100008573
type: Gene
SIO_000068: ncbigene

position:422481:-1
position: 422481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:430049:-1
position: 430049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:422481-430049:-1:exon

SLC9A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: SLC9A1
product: solute carrier family 9 member A1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 20 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_010723289.2
SIO_010081: SLC9A1
subclass of: SO_0000673
so part of: SLC9A1
location: complement(join(422481..423609,424203..424272,424569..424670,425039..425153,425264..425436,425811..425881,426250..426339,426562..426764,427097..427314,427722..427972,429221..429799,430038..430049))
location: region:422481-430049:-1
so has part: feature:430038-430049:-1:exon
so has part: feature:429221-429799:-1:exon
so has part: feature:427722-427972:-1:exon
so has part: feature:427097-427314:-1:exon
so has part: feature:426562-426764:-1:exon
so has part: feature:426250-426339:-1:exon
so has part: feature:425811-425881:-1:exon
so has part: feature:425264-425436:-1:exon
so has part: feature:425039-425153:-1:exon
so has part: feature:424569-424670:-1:exon
so has part: feature:424203-424272:-1:exon
so has part: feature:422481-423609:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:430038-430049:-1:exon

position:430038:-1
position: 430038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:429221-429799:-1:exon

position:429221:-1
position: 429221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:429799:-1
position: 429799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:427722-427972:-1:exon

position:427722:-1
position: 427722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:427972:-1
position: 427972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:427097-427314:-1:exon

position:427097:-1
position: 427097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:427314:-1
position: 427314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:426562-426764:-1:exon

position:426562:-1
position: 426562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:426764:-1
position: 426764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:426250-426339:-1:exon

position:426250:-1
position: 426250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:426339:-1
position: 426339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:425811-425881:-1:exon

position:425811:-1
position: 425811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:425881:-1
position: 425881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:425264-425436:-1:exon

position:425264:-1
position: 425264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:425436:-1
position: 425436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:425039-425153:-1:exon

position:425039:-1
position: 425039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:425153:-1
position: 425153
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:424569-424670:-1:exon

position:424569:-1
position: 424569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:424670:-1
position: 424670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:424203-424272:-1:exon

position:424203:-1
position: 424203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:424272:-1
position: 424272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:422481-423609:-1:exon

position:423609:-1
position: 423609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SLC9A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: SLC9A1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: sodium/hydrogen exchanger 1
translation: MGHSKGELRQAAGSQGRGEGWERSLLPTSSVPVANVCSALSSPGFHVMSSVSKVVPESCLLIVVGLLVGGLIKAVGEKPPILKSDIFFLFLLPPIILDAGYFLPLRQFTENLGTILIFAVVGTLWNAFFLGGLMYAVCQIGGSGLNHIGLLANLLFGSIISAVDPVAVLAVFEEIHINELLHILVFGESLLNDAVTVVLYHLFEEFANFEQVTIIDIILGFLSFFVVSLGGVFVGVIYGLIAAFTSRFTSNIRVIEPLFVFLYSYMAYLSAELFHLSGIMALIASGVVMRPYVEANISHKSHTTIKYFLKMWSSVSETLIFIFLGVSTVAGQHYWNWTFVISTLLFCLIARVLGVLVLTWFINKFRIVKLTPKDQFIIAYGGLRGAIAFSLCYLLDYEHFNMRDMFLTAIITVIFFTVFVQGMTIRPLVDLLAVKKKQETKRSINEEIHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYVKKCLIAGERSKEPQLIAFYHKMEMKQAIELVESXGLGKIPSTISAVSIQNISPKTLPVERVIPTLSKDKEEEIRKILRSNLQKTRQRLRSYNRHTLVADPYEEAWNQMLLRRQKIRQADRQNAYLTVPANKIDSPTMSRARIGSDPLAYEPKPDSENLPIITIDPASPQSPESVDLPNEVPKGCGGLPPSPEEDEEGLVMRPKEPSSPGTDDVFTPGTSDSPSSQRMLRCLSDPGPRQEPEEGEPFIPKGQ
SIO_010081: SLC9A1
subclass of: SO_0000673
so part of: SLC9A1
location: complement(join(423287..423609,424203..424272,424569..424670,425039..425153,425264..425436,425811..425881,426250..426339,426562..426764,427097..427314,427722..427972,429221..429799,430038..430049))
location: region:423287-430049:-1
so has part: feature:430038-430049:-1:exon
so has part: feature:429221-429799:-1:exon
so has part: feature:427722-427972:-1:exon
so has part: feature:427097-427314:-1:exon
so has part: feature:426562-426764:-1:exon
so has part: feature:426250-426339:-1:exon
so has part: feature:425811-425881:-1:exon
so has part: feature:425264-425436:-1:exon
so has part: feature:425039-425153:-1:exon
so has part: feature:424569-424670:-1:exon
so has part: feature:424203-424272:-1:exon
so has part: feature:423287-423609:-1:exon

XP_010721591.1
type: Protein
SIO_000068: ncbiprotein

position:423287:-1
position: 423287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:430038-430049:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:429221-429799:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:427722-427972:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:427097-427314:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:426562-426764:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:426250-426339:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:425811-425881:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:425264-425436:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:425039-425153:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:424569-424670:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:424203-424272:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:423287-423609:-1:exon

TENT5B
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: TENT5B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(440594..443691)
location: region:440594-443691:-1
so has part: feature:440594-443691:-1:exon
subclass of: SO_0000010

100549299
type: Gene
SIO_000068: ncbigene

position:440594:-1
position: 440594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:443691:-1
position: 443691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:440594-443691:-1:exon

TENT5B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: TENT5B
product: terminal nucleotidyltransferase 5B
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_019622720.2
SIO_010081: TENT5B
subclass of: SO_0000673
so part of: TENT5B
location: complement(join(440594..441980,443686..443691))
location: region:440594-443691:-1
so has part: feature:443686-443691:-1:exon
so has part: feature:440594-441980:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:443686-443691:-1:exon

position:443686:-1
position: 443686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:440594-441980:-1:exon

position:441980:-1
position: 441980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TENT5B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: TENT5B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: terminal nucleotidyltransferase 5B
translation: MEFAFSHWSDPYKRGERISALSVGCPGNRCSLLTSTLFIPQVVRSRLEKKGIVVHNVRLNGSAASHVLHQDSGLGYKDLDLIFGVDLKTEDVFQQVKDVVMDCLLDFLPEGVNKDKITPMTLKEAYVQKLVKVCNETDRWSLISLSNNSGKNVELKFVDSLRRQFEFSVDSFQIILDSLLLFGECSENPMAENFHPTVTGESMYGDFEEAMEHLRSRVIATRNPEEIRGGGLLKYCNLLVRGFKPKSEVDMKALQRYMCSRFFIDFSDIGEQQRKLECYLQSHFVGMEDKRYDYLMTLHRVVNESTVCLMGHERRQTLNLIATLAVRVLAEQNILPTVTNVTCYYQPAPYISEINVNYYVTHVQPFLPCNQSYPTWLPCN
SIO_010081: TENT5B
subclass of: SO_0000673
so part of: TENT5B
location: complement(join(440844..441980,443686..443691))
location: region:440844-443691:-1
so has part: feature:443686-443691:-1:exon
so has part: feature:440844-441980:-1:exon

XP_019478265.1
type: Protein
SIO_000068: ncbiprotein

position:440844:-1
position: 440844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:443686-443691:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:440844-441980:-1:exon

NUDC
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: NUDC
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <463179..471159
location: region:463179-471159:1
so has part: feature:463179-471159:1:exon
subclass of: SO_0000010

100540562
type: Gene
SIO_000068: ncbigene

position:463179:1
position: 463179
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:471159:1
position: 471159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:463179-471159:1:exon

NUDC
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: NUDC
product: nuclear distribution C, dynein complex regulator
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 222 samples with support for all annotated introns
transcript id: XM_010723290.2
SIO_010081: NUDC
subclass of: SO_0000673
so part of: NUDC
location: join(<463179..463352,465279..465482,465818..465901,466260..466373,466780..466974,467772..467855,468181..468299,470043..471159)
location: region:463179-471159:1
so has part: feature:463179-463352:1:exon
so has part: feature:465279-465482:1:exon
so has part: feature:465818-465901:1:exon
so has part: feature:466260-466373:1:exon
so has part: feature:466780-466974:1:exon
so has part: feature:467772-467855:1:exon
so has part: feature:468181-468299:1:exon
so has part: feature:470043-471159:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:463179-463352:1:exon

position:463352:1
position: 463352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:465279-465482:1:exon

position:465279:1
position: 465279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:465482:1
position: 465482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:465818-465901:1:exon

position:465818:1
position: 465818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:465901:1
position: 465901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:466260-466373:1:exon

position:466260:1
position: 466260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:466373:1
position: 466373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:466780-466974:1:exon

position:466780:1
position: 466780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:466974:1
position: 466974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:467772-467855:1:exon

position:467772:1
position: 467772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:467855:1
position: 467855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:468181-468299:1:exon

position:468181:1
position: 468181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:468299:1
position: 468299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:470043-471159:1:exon

position:470043:1
position: 470043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NUDC
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: NUDC
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nuclear migration protein nudC
translation: TKHEVPWSDVVSLLWLVVFFFHPFPVPLPCSQLVNTFFSFLRRKTDFFTGGEDGVAEKLITDSFNHHNKLAQKERKEKKARQEAERREKAERAAKLAKEAKQEANEPRIKELTDEEAERLQLEINQKKEAQKEVNNVPVKSSEDEGDSSDSNKQETDEEDKDENDKGKLKPNAGNGADLPNYRWTQTLSELDLAIPFKVTFRLKGKDVVVDIQRRRLRVGLKGHPPVIDGELFNEVKVEESSWLIEDGKTVTVHLEKINKMEWWNKLVSTDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMGLPTSDEQKKQDILKKFMEQHPEMDFSKAKFN
SIO_010081: NUDC
subclass of: SO_0000673
so part of: NUDC
location: join(<463179..463352,465279..465482,465818..465901,466260..466373,466780..466974,467772..467855,468181..468299,470043..470094)
location: region:463179-470094:1
so has part: feature:463179-463352:1:exon
so has part: feature:465279-465482:1:exon
so has part: feature:465818-465901:1:exon
so has part: feature:466260-466373:1:exon
so has part: feature:466780-466974:1:exon
so has part: feature:467772-467855:1:exon
so has part: feature:468181-468299:1:exon
so has part: feature:470043-470094:1:exon

XP_010721592.2
type: Protein
SIO_000068: ncbiprotein

position:470094:1
position: 470094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:463179-463352:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:465279-465482:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:465818-465901:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:466260-466373:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:466780-466974:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:467772-467855:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:468181-468299:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:470043-470094:1:exon

KDF1
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: KDF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(474871..481983)
location: region:474871-481983:-1
so has part: feature:474871-481983:-1:exon
subclass of: SO_0000010

100540407
type: Gene
SIO_000068: ncbigene

position:474871:-1
position: 474871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:481983:-1
position: 481983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:474871-481983:-1:exon

KDF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: KDF1
product: keratinocyte differentiation factor 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 73 samples with support for all annotated introns
transcript id: XM_010723251.3
SIO_010081: KDF1
subclass of: SO_0000673
so part of: KDF1
location: complement(join(474871..477063,477722..477796,478696..479802,479925..480038,481562..481983))
location: region:474871-481983:-1
so has part: feature:481562-481983:-1:exon
so has part: feature:479925-480038:-1:exon
so has part: feature:478696-479802:-1:exon
so has part: feature:477722-477796:-1:exon
so has part: feature:474871-477063:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:481562-481983:-1:exon

position:481562:-1
position: 481562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:479925-480038:-1:exon

position:479925:-1
position: 479925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:480038:-1
position: 480038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:478696-479802:-1:exon

position:478696:-1
position: 478696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:479802:-1
position: 479802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:477722-477796:-1:exon

position:477722:-1
position: 477722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:477796:-1
position: 477796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:474871-477063:-1:exon

position:477063:-1
position: 477063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

KDF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: KDF1
product: keratinocyte differentiation factor 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 144 samples with support for all annotated introns
transcript id: XM_010723250.3
SIO_010081: KDF1
subclass of: SO_0000673
so part of: KDF1
location: complement(join(474871..477063,477722..477796,478696..479802,481562..481981))
location: region:474871-481981:-1
so has part: feature:481562-481981:-1:exon
so has part: feature:478696-479802:-1:exon
so has part: feature:477722-477796:-1:exon
so has part: feature:474871-477063:-1:exon

position:481981:-1
position: 481981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:481562-481981:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:478696-479802:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:477722-477796:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:474871-477063:-1:exon

KDF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: KDF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratinocyte differentiation factor 1
translation: MLGRKAGPPHNLNSHRQKNQSYQQAVPPRSRPSKEAEVGLEVLGGLTPEIKQSRTRAQQMRDRKGRKADLKDSNGREAETITFISGTAEAPANQSFCCSSLSHAWKTYKAVFCCIVTCGGCFQDCSVCIPYPGPAETSTDDGKNGDYNGRLPNSPANVSPTEKNGNQIKKSHMGSSFSYPDVKLKGIPVYQNRSLGHHLESDSCFKELLPEKPLRNSIEKPPLPSSHRSSEEYYSFHESDLDISELNGSMSSREIDVLIFKKLTELFSVHQIDELAKCTSDTVFLEKTNKISDLINSITQDYNLDEQDAECRLVRGIIRISTRKSRVRPHISVPASQSHEEKSSRGNAPDSGNETMLESTVISQDDLAVQISEETPADVLARNMRRHSSAGSPTSRDSSFQDTETDSSGAPLLQVYC
SIO_010081: KDF1
subclass of: SO_0000673
so part of: KDF1
location: complement(join(476981..477063,477722..477796,478696..479791))
location: region:476981-479791:-1
so has part: feature:478696-479791:-1:exon
so has part: feature:477722-477796:-1:exon
so has part: feature:476981-477063:-1:exon

XP_010721552.1
type: Protein
SIO_000068: ncbiprotein

position:476981:-1
position: 476981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:479791:-1
position: 479791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:478696-479791:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:477722-477796:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:476981-477063:-1:exon

KDF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: KDF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratinocyte differentiation factor 1
translation: MLGRKAGPPHNLNSHRQKNQSYQQAVPPRSRPSKEAEVGLEVLGGLTPEIKQSRTRAQQMRDRKGRKADLKDSNGREAETITFISGTAEAPANQSFCCSSLSHAWKTYKAVFCCIVTCGGCFQDCSVCIPYPGPAETSTDDGKNGDYNGRLPNSPANVSPTEKNGNQIKKSHMGSSFSYPDVKLKGIPVYQNRSLGHHLESDSCFKELLPEKPLRNSIEKPPLPSSHRSSEEYYSFHESDLDISELNGSMSSREIDVLIFKKLTELFSVHQIDELAKCTSDTVFLEKTNKISDLINSITQDYNLDEQDAECRLVRGIIRISTRKSRVRPHISVPASQSHEEKSSRGNAPDSGNETMLESTVISQDDLAVQISEETPADVLARNMRRHSSAGSPTSRDSSFQDTETDSSGAPLLQVYC
SIO_010081: KDF1
subclass of: SO_0000673
so part of: KDF1
location: complement(join(476981..477063,477722..477796,478696..479791))
location: region:476981-479791:-1
so has part: feature:478696-479791:-1:exon
so has part: feature:477722-477796:-1:exon
so has part: feature:476981-477063:-1:exon

XP_010721553.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:478696-479791:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:477722-477796:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:476981-477063:-1:exon

NR0B2
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: NR0B2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(483647..486135)
location: region:483647-486135:-1
so has part: feature:483647-486135:-1:exon
subclass of: SO_0000010

100540717
type: Gene
SIO_000068: ncbigene

position:483647:-1
position: 483647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:486135:-1
position: 486135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:483647-486135:-1:exon

NR0B2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: NR0B2
product: nuclear receptor subfamily 0 group B member 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 119 samples with support for all annotated introns
transcript id: XM_003212477.4
SIO_010081: NR0B2
subclass of: SO_0000673
so part of: NR0B2
location: complement(join(483647..485059,485503..486135))
location: region:483647-486135:-1
so has part: feature:485503-486135:-1:exon
so has part: feature:483647-485059:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:485503-486135:-1:exon

position:485503:-1
position: 485503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:483647-485059:-1:exon

position:485059:-1
position: 485059
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NR0B2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: NR0B2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nuclear receptor subfamily 0 group B member 2
translation: MTSSTDMDCERCQCQHEDKHSAILYTLLSQNLSHSPPHQRCLCHQRWTVCLRTPHITCQAASDVLVKTISFMKNLPSFHLLPRGDQLLLLDSCWVPLFLLGLVQETVTFEVMETPAPSMLEKILLDGQSKRQEPEWTQPMLAAVQWLQCSLNTFWSLDLSPKEYAYLKGAILFNPDVPGLTASLYIESLQREAERALQEVVRILHPEDQDRFALILLITSTLKSIPPALITDLFFRPVIGNADIVELIVDMLYEITSWQPAPSPHTAL
SIO_010081: NR0B2
subclass of: SO_0000673
so part of: NR0B2
location: complement(join(484779..485059,485503..486028))
location: region:484779-486028:-1
so has part: feature:485503-486028:-1:exon
so has part: feature:484779-485059:-1:exon

XP_003212525.1
type: Protein
SIO_000068: ncbiprotein

position:484779:-1
position: 484779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:486028:-1
position: 486028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:485503-486028:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:484779-485059:-1:exon

GPATCH3
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: GPATCH3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(488445..492628)
location: region:488445-492628:-1
so has part: feature:488445-492628:-1:exon
subclass of: SO_0000010

100540870
type: Gene
SIO_000068: ncbigene

position:488445:-1
position: 488445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:492628:-1
position: 492628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:488445-492628:-1:exon

GPATCH3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: GPATCH3
product: G-patch domain containing 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 152 samples with support for all annotated introns
transcript id: XM_010723292.3
SIO_010081: GPATCH3
subclass of: SO_0000673
so part of: GPATCH3
location: complement(join(488445..488851,489390..489517,489657..489778,490040..490099,490454..490628,491940..492358,492603..492628))
location: region:488445-492628:-1
so has part: feature:492603-492628:-1:exon
so has part: feature:491940-492358:-1:exon
so has part: feature:490454-490628:-1:exon
so has part: feature:490040-490099:-1:exon
so has part: feature:489657-489778:-1:exon
so has part: feature:489390-489517:-1:exon
so has part: feature:488445-488851:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:492603-492628:-1:exon

position:492603:-1
position: 492603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:491940-492358:-1:exon

position:491940:-1
position: 491940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:492358:-1
position: 492358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:490454-490628:-1:exon

position:490454:-1
position: 490454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:490628:-1
position: 490628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:490040-490099:-1:exon

position:490040:-1
position: 490040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:490099:-1
position: 490099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:489657-489778:-1:exon

position:489657:-1
position: 489657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:489778:-1
position: 489778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:489390-489517:-1:exon

position:489390:-1
position: 489390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:489517:-1
position: 489517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:488445-488851:-1:exon

position:488851:-1
position: 488851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

GPATCH3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: GPATCH3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: G patch domain-containing protein 3
translation: MKAEGETVMESDLKRLPEFNPPSFMPFGNVGTPLKVFLELIRACRLPPRIIKKLQLDFPKTGSSRRYGNVPFEYQNTETVIEEERVYTATGDEITEDEGPVARSEVTDPASAEEDEVGQEKEEEESHSDDDNDTCEEWERHEALHEDVTKQDRVEERLFEEEIELKWEKGGSGLVFYTDAQYWREENGDFDEQTADDWDVDMSIYYDKDGGDKDARDSVQMWLEQRLRDGLEDGSTSGQQIGTFERYTKGFGRKVLEQQGWTEGLGLGSNNSGMAEALDNEGQNPRCRRGLGYHGEKLPAFSKVKKPRRETPVLISTIYDDPEPMDSGDQLLRRQPPTAMKYRLDMPFVRASRGTLENSSTQSH
SIO_010081: GPATCH3
subclass of: SO_0000673
so part of: GPATCH3
location: complement(join(488632..488851,489390..489517,489657..489778,490040..490099,490454..490628,491940..492329))
location: region:488632-492329:-1
so has part: feature:491940-492329:-1:exon
so has part: feature:490454-490628:-1:exon
so has part: feature:490040-490099:-1:exon
so has part: feature:489657-489778:-1:exon
so has part: feature:489390-489517:-1:exon
so has part: feature:488632-488851:-1:exon

XP_010721594.2
type: Protein
SIO_000068: ncbiprotein

position:488632:-1
position: 488632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:492329:-1
position: 492329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:491940-492329:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:490454-490628:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:490040-490099:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:489657-489778:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:489390-489517:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:488632-488851:-1:exon

ZDHHC18
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: ZDHHC18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <493740..499173
location: region:493740-499173:1
so has part: feature:493740-499173:1:exon
subclass of: SO_0000010

100545136
type: Gene
SIO_000068: ncbigene

position:493740:1
position: 493740
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:499173:1
position: 499173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:493740-499173:1:exon

ZDHHC18
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: ZDHHC18
product: zinc finger DHHC-type palmitoyltransferase 18
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 198 samples with support for all annotated introns
transcript id: XM_019622721.1
SIO_010081: ZDHHC18
subclass of: SO_0000673
so part of: ZDHHC18
location: join(<493740..493977,494469..494517,494965..495067,496492..496601,497244..499173)
location: region:493740-499173:1
so has part: feature:493740-493977:1:exon
so has part: feature:494469-494517:1:exon
so has part: feature:494965-495067:1:exon
so has part: feature:496492-496601:1:exon
so has part: feature:497244-499173:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:493740-493977:1:exon

position:493977:1
position: 493977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:494469-494517:1:exon

position:494469:1
position: 494469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:494517:1
position: 494517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:494965-495067:1:exon

position:494965:1
position: 494965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:495067:1
position: 495067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:496492-496601:1:exon

position:496492:1
position: 496492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:496601:1
position: 496601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:497244-499173:1:exon

position:497244:1
position: 497244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ZDHHC18
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: ZDHHC18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: palmitoyltransferase ZDHHC18
translation: SRDRECKLGSQLVVRGSAASGGQQQPSLFSCVSERFDHHCPWVGNCVGKRNYRYFYAFILSLSFLTAFIFACVVTHLTLRSQRDGFLTTLKTTPASVLELVICFFSVWSILGLSGFHTYLVASNLTTNEDIKGSWSNKRGSEFANPYSHKSILTNCCAVLCGPFHPSLIDRRGFIQPDVGTPASPKSEIPSFGAKPDTSMVGGGAGV
SIO_010081: ZDHHC18
subclass of: SO_0000673
so part of: ZDHHC18
location: join(<493740..493977,494469..494517,494965..495067,496492..496601,497244..497367)
location: region:493740-497367:1
so has part: feature:493740-493977:1:exon
so has part: feature:494469-494517:1:exon
so has part: feature:494965-495067:1:exon
so has part: feature:496492-496601:1:exon
so has part: feature:497244-497367:1:exon

XP_019478266.1
type: Protein
SIO_000068: ncbiprotein

position:497367:1
position: 497367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:493740-493977:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:494469-494517:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:494965-495067:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:496492-496601:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:497244-497367:1:exon

SFN
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: SFN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 502511..503907
location: region:502511-503907:1
so has part: feature:502511-503907:1:exon
subclass of: SO_0000010

100544986
type: Gene
SIO_000068: ncbigene

position:502511:1
position: 502511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:503907:1
position: 503907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:502511-503907:1:exon

SFN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: SFN
product: stratifin
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 48 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_003212503.3
SIO_010081: SFN
subclass of: SO_0000673
so part of: SFN
location: 502511..503907
location: region:502511-503907:1
so has part: feature:502511-503907:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:502511-503907:1:exon

SFN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: SFN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 14-3-3 protein sigma
translation: MARNHQVQKAKLAEQAERYEDMADFMKAVVEHGDELSNEERNLLSVAYKNVVGCQRSAWRVISSIEHKTEEGDDKAQLVNEYREKVEEELKGVCNVVLGLLEKHLIKKASDAESKVFYLKMKGDYFRYLAEVAAGNDRKETIDSAQKAYQEAMDISKKEMQPTNPIRLGLALNFSVFHYEIANAPEQAISLAKTTFDEAMGDLHTLSEDSYKDSTLIMQLLRDNLTLWTAECAGEDGGEAGEEPKN
SIO_010081: SFN
subclass of: SO_0000673
so part of: SFN
location: 502673..503413
location: region:502673-503413:1
so has part: feature:502673-503413:1:exon

XP_003212551.1
type: Protein
SIO_000068: ncbiprotein

position:502673:1
position: 502673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:503413:1
position: 503413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:502673-503413:1:exon

GPN2
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: GPN2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(507224..511923)
location: region:507224-511923:-1
so has part: feature:507224-511923:-1:exon
subclass of: SO_0000010

100539785
type: Gene
SIO_000068: ncbigene

position:507224:-1
position: 507224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:511923:-1
position: 511923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:507224-511923:-1:exon

GPN2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: GPN2
product: GPN-loop GTPase 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 218 samples with support for all annotated introns
transcript id: XM_003212472.4
SIO_010081: GPN2
subclass of: SO_0000673
so part of: GPN2
location: complement(join(507224..507825,508317..508447,509218..509378,509576..509732,511314..511923))
location: region:507224-511923:-1
so has part: feature:511314-511923:-1:exon
so has part: feature:509576-509732:-1:exon
so has part: feature:509218-509378:-1:exon
so has part: feature:508317-508447:-1:exon
so has part: feature:507224-507825:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:511314-511923:-1:exon

position:511314:-1
position: 511314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:509576-509732:-1:exon

position:509576:-1
position: 509576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:509732:-1
position: 509732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:509218-509378:-1:exon

position:509218:-1
position: 509218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:509378:-1
position: 509378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:508317-508447:-1:exon

position:508317:-1
position: 508317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:508447:-1
position: 508447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:507224-507825:-1:exon

position:507825:-1
position: 507825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

GPN2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: GPN2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GPN-loop GTPase 2
translation: MSESSKGSPLAFGQVVIGPPGSGKTTYCHGMQEFMGRIGRKVAVVNLDPANEGMPYSCAVDISELITLSDVMENLKLGPNGGLIYCMEYLEANFDWLQEKLAAFRGHYYLFDCPGQVELYTHHDALKNVFAQLAKWNFRLAAVHLVDSHYCTDPGKFISVLCTSLSTMLHVELPHVNVLSKMDLIEQYGKLAFNLDYYTEVLDLSYLVDHLASDPFFRNYRRLNAKLVEVIEDYSLVSFVPLNVQDKDSMRQVMQAVDKANGCSFGDQEHRSLEALMSAAVGADFHFTSTLAVQEKYVQSQDKTVEEEVMDM
SIO_010081: GPN2
subclass of: SO_0000673
so part of: GPN2
location: complement(join(507753..507825,508317..508447,509218..509378,509576..509732,511314..511730))
location: region:507753-511730:-1
so has part: feature:511314-511730:-1:exon
so has part: feature:509576-509732:-1:exon
so has part: feature:509218-509378:-1:exon
so has part: feature:508317-508447:-1:exon
so has part: feature:507753-507825:-1:exon

XP_003212520.1
type: Protein
SIO_000068: ncbiprotein

position:507753:-1
position: 507753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:511730:-1
position: 511730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:511314-511730:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:509576-509732:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:509218-509378:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:508317-508447:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:507753-507825:-1:exon

LOC104914277
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914277
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(<515789..521205)
location: region:515789-521205:-1
so has part: feature:515789-521205:-1:exon
subclass of: SO_0000010

104914277
type: Gene
SIO_000068: ncbigene

position:515789:-1
position: 515789
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:521205:-1
position: 521205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:515789-521205:-1:exon

LOC104914277
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914277
product: complement C2-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 114 samples with support for all annotated introns
transcript id: XM_019622722.1
SIO_010081: LOC104914277
subclass of: SO_0000673
so part of: LOC104914277
location: complement(join(<515789..515832,515948..516083,516214..516305,516597..516673,516766..516916,517044..517155,517542..517762,518474..518563,518638..518784,518859..518997,519305..519441,519516..519611,519960..520132,521118..521205))
location: region:515789-521205:-1
so has part: feature:521118-521205:-1:exon
so has part: feature:519960-520132:-1:exon
so has part: feature:519516-519611:-1:exon
so has part: feature:519305-519441:-1:exon
so has part: feature:518859-518997:-1:exon
so has part: feature:518638-518784:-1:exon
so has part: feature:518474-518563:-1:exon
so has part: feature:517542-517762:-1:exon
so has part: feature:517044-517155:-1:exon
so has part: feature:516766-516916:-1:exon
so has part: feature:516597-516673:-1:exon
so has part: feature:516214-516305:-1:exon
so has part: feature:515948-516083:-1:exon
so has part: feature:515789-515832:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:521118-521205:-1:exon

position:521118:-1
position: 521118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:519960-520132:-1:exon

position:519960:-1
position: 519960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:520132:-1
position: 520132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:519516-519611:-1:exon

position:519516:-1
position: 519516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:519611:-1
position: 519611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:519305-519441:-1:exon

position:519305:-1
position: 519305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:519441:-1
position: 519441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:518859-518997:-1:exon

position:518859:-1
position: 518859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:518997:-1
position: 518997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:518638-518784:-1:exon

position:518638:-1
position: 518638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:518784:-1
position: 518784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:518474-518563:-1:exon

position:518474:-1
position: 518474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:518563:-1
position: 518563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:517542-517762:-1:exon

position:517542:-1
position: 517542
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:517762:-1
position: 517762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:517044-517155:-1:exon

position:517044:-1
position: 517044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:517155:-1
position: 517155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:516766-516916:-1:exon

position:516766:-1
position: 516766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:516916:-1
position: 516916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:516597-516673:-1:exon

position:516597:-1
position: 516597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:516673:-1
position: 516673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:516214-516305:-1:exon

position:516214:-1
position: 516214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:516305:-1
position: 516305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:515948-516083:-1:exon

position:515948:-1
position: 515948
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:516083:-1
position: 516083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:515789-515832:-1:exon

position:515832:-1
position: 515832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104914277
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914277
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: complement C2-like
translation: MSGGRHHGAEVRVHCGAGLQLLGPPRRYCMETGRWSGPEPTCRHPYAFDLPEDISSGLGSSFASILELAGARNDSDMSLGRRIVLSRNESLHVYVLLDASGSVQQENFELFRQSAVAIVDRLSSFEVPLRFAIVSFATHTHVIISTIEDDASDADEVIARLEAMNFDVHRNATGTNMHGALLEVYHMILFQKERSMRDGQPNVWRNTRHVVILLTDGRFNVGGHPRDAVAKIEDVLEIREDREEYLDIYAFGVGTLEVDMAELEAVASHRRDERHAFKLADASALRQALEGALAATAIGDLCGVIIPAGTVRPPWHVVLRTGVQQRCAGTLLGGRWVLTAAHCFLGGESPHDWSAELAGGQEVSIRGWKLHEDFDIRGRAARGVPEFYDYDVALVELEKEVGDTGAPRRICIPCTEDANRALRMAPGTTCQKQEVELLGHTRVPAEFVSLEGKRLSVRIKEQEERASCLGGAVQPGMPHANASVKDVVTERFLCSGQESGSEREDAACKGESGGSLFVDRRHRF
SIO_010081: LOC104914277
subclass of: SO_0000673
so part of: LOC104914277
location: complement(join(<515789..515832,515948..516083,516214..516305,516597..516673,516766..516916,517044..517155,517542..517762,518474..518563,518638..518784,518859..518997,519305..519441,519516..519611,519960..520089))
location: region:515789-520089:-1
so has part: feature:519960-520089:-1:exon
so has part: feature:519516-519611:-1:exon
so has part: feature:519305-519441:-1:exon
so has part: feature:518859-518997:-1:exon
so has part: feature:518638-518784:-1:exon
so has part: feature:518474-518563:-1:exon
so has part: feature:517542-517762:-1:exon
so has part: feature:517044-517155:-1:exon
so has part: feature:516766-516916:-1:exon
so has part: feature:516597-516673:-1:exon
so has part: feature:516214-516305:-1:exon
so has part: feature:515948-516083:-1:exon
so has part: feature:515789-515832:-1:exon

XP_019478267.1
type: Protein
SIO_000068: ncbiprotein

position:520089:-1
position: 520089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:519960-520089:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:519516-519611:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:519305-519441:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:518859-518997:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:518638-518784:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:518474-518563:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:517542-517762:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:517044-517155:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:516766-516916:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:516597-516673:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:516214-516305:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:515948-516083:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:515789-515832:-1:exon

LOC109370947
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC109370947
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 521544..524832
location: region:521544-524832:1
so has part: feature:521544-524832:1:exon
subclass of: SO_0000011

109370947
type: Gene
SIO_000068: ncbigene

position:521544:1
position: 521544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:524832:1
position: 524832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:521544-524832:1:exon

LOC109370947
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC109370947
product: uncharacterized LOC109370947, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 71 samples with support for all annotated introns
transcript id: XR_002121517.1
SIO_010081: LOC109370947
subclass of: SO_0000673
so part of: LOC109370947
location: join(521544..521630,523409..524832)
location: region:521544-524832:1
so has part: feature:521544-521630:1:exon
so has part: feature:523409-524832:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:521544-521630:1:exon

position:521630:1
position: 521630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:523409-524832:1:exon

position:523409:1
position: 523409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109370947
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC109370947
product: uncharacterized LOC109370947, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XR_002121518.2
SIO_010081: LOC109370947
subclass of: SO_0000673
so part of: LOC109370947
location: join(521720..522360,523409..524832)
location: region:521720-524832:1
so has part: feature:521720-522360:1:exon
so has part: feature:523409-524832:1:exon

position:521720:1
position: 521720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:521720-522360:1:exon

position:522360:1
position: 522360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:523409-524832:1:exon

RLF
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: RLF
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(532677..>555428)
location: region:532677-555428:-1
so has part: feature:532677-555428:-1:exon
subclass of: SO_0000010

100544835
type: Gene
SIO_000068: ncbigene

position:532677:-1
position: 532677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:555428:-1
position: 555428
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:532677-555428:-1:exon

RLF
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: RLF
product: rearranged L-myc fusion
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 172 samples with support for all annotated introns
transcript id: XM_010723294.3
SIO_010081: RLF
subclass of: SO_0000673
so part of: RLF
location: complement(join(532677..537797,539760..539901,540810..540946,541659..541861,543201..543333,549435..549516,555256..>555428))
location: region:532677-555428:-1
so has part: feature:555256-555428:-1:exon
so has part: feature:549435-549516:-1:exon
so has part: feature:543201-543333:-1:exon
so has part: feature:541659-541861:-1:exon
so has part: feature:540810-540946:-1:exon
so has part: feature:539760-539901:-1:exon
so has part: feature:532677-537797:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:555256-555428:-1:exon

position:555256:-1
position: 555256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:549435-549516:-1:exon

position:549435:-1
position: 549435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:549516:-1
position: 549516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:543201-543333:-1:exon

position:543201:-1
position: 543201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:543333:-1
position: 543333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:541659-541861:-1:exon

position:541659:-1
position: 541659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:541861:-1
position: 541861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:540810-540946:-1:exon

position:540810:-1
position: 540810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:540946:-1
position: 540946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:539760-539901:-1:exon

position:539760:-1
position: 539760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:539901:-1
position: 539901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:532677-537797:-1:exon

position:537797:-1
position: 537797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RLF
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: RLF
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein Rlf
translation: KPIFFQTLLHYAGSRGASEHILPFLEVYRISIQSFANARPYLTTECEDVLLVLGRLVLSCFELLLSIPESDLPHEVWLEFHQSIQNSHDALLEFGNNNLQVLVDITREGVWKNPVLMKILSQQPVETEEANKLITREGPSFLQMRIKHLMKSNCIPQATFLSKLCADSPDIANVASFRQAYITCVCSMLPNEDSIKEIAKVDCKEVLDIICNLESEGQENTAFILCTTYLTHQLQTANVYCSWELTLFWSKLQRRIDPSLDSFLERCRQFGIIAKTLQHLFFLIRVIQSEAEEAGLAVSVLLCVRALQIRSNGSDEMKTSVCKTIACLLPEDLEVRRACQLTEFLLEPTLSGFNMLEELYMQPDQKFDEENALVPNSLRCELLLALKAYWPFDPEFWDWKTLKRHCLKLLGKAGSDSEDDASCNMSINETDMLETFFSDCDEAKDHKYYDGKDPINYHKEKARVKKPIGSSERYQRWLQYKFFCVLCKRECIEARILHHSKMHMEDGIYTCPVCTKKFKRKEFFVPHVMEHVKMPPSRTHRPKKKIILKKERSPQKTTASSSPTPTLQEKPHQPELSEAFGSDAHEYVTFSQLENCQLQDRDIYPCPGTDCSRVFKQFKYLSVHLKAEHQNNDENAKHYLDMKNRREKCAFCRRHFMTSFHLREHERVHCGPQPYMCVSMDCYARFGSVNELLNHKQTHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCNFFGCKKFYYSKTEFQNHLAAHNIAVSNGEVKQTVKLEESQLLEQSENSHQNEASDPTGSQEIPQIKEEALSDSEDLDSESNCSLHCGNHSGTAAVNEGQVPPLLIETLAHGQTVPSFLMSQEGVFHSADVKQQCTNAAVCFDEKKFSCGFEGCCSAHKNSRSMHKHLRRAHPYNFKGKKGMEVKSKDFLDLLSDAPESQSPTDISTELGHKSDRNTDSPESSYCNINAKGNNSFKEETYPSSPETSFYDSSKESSIEDNMLELMLGLKHLSLKNSNIQSSSRSKRVLGSLQSCSSRDTKCPESGVDATTSKFQFQEQQDNLPSQYLTQLAAKPFFCECQGCTCEFVTREALLMHYVKKHNYSKEMVLQLNMFQHRYSPFKCHICQRSFTRKTHLRIHYRNKHQIGCEQVAHKVCSNEKFDHVSLCTDDVHKNSAVPTPVCPTKVEFIDRSEQRCHPKKEECSSETDLESSEETDGNVTRKSSKIATLDSHREELEAREGRGSKRTVAKGNLCYILHKYHKPFHCIHKSCNSAFTNQKGLIRHYRTVHQYNKEQLCLEKDKARTKRELVKCKKIFACKHKECGKRFFCSKDLAKHCSDFHNEHLDDQKLLAGTESARFACNQAQCPAVFCTFSKLKQHLIEEHASGEKINKDFEIHCDLNGCNRIFTNYSHYSQHVYFRHSEYYDDLFGNQKEEQDNHDKNKSGQSCVKGGFGLNKQNGKRVKDKPKRISRSKDKHLLSFKTKEEALQMCQENSNQTQYPCMVVGCLSVVKLESSILRHYKRTHQMTNMYIEQRIQKLVLCVKCGTMTEKQSCSEPALDLDKKDVEVKEEKSADPECPQETEKPLVSNTEHQDVSSEEQKQCPSSSESFNTSAFMYSGTLNCSHSSKSSCLEEHNVRESDMGNTEEFSENSERENSSYFSSLQLELPREKEPEGSEHSAVNQNAKRNVLFATKDKFQKPPVSRPFDLKTYKPMGFESSFLKFIQESEGKDDDDDDDFDEVVEWESPEQLPIDRALQKEGEGQKDSPLNSCASDKSVVIPQSDPGQLPEMQPLLAEPSSAPSLENLRAILDKALTGCGDLALKQLHYLRPVVVLERSKFSTALIDLFPTKKADELCVGSM
SIO_010081: RLF
subclass of: SO_0000673
so part of: RLF
location: complement(join(533100..537797,539760..539901,540810..540946,541659..541861,543201..543333,549435..549516,555256..>555428))
location: region:533100-555428:-1
so has part: feature:555256-555428:-1:exon
so has part: feature:549435-549516:-1:exon
so has part: feature:543201-543333:-1:exon
so has part: feature:541659-541861:-1:exon
so has part: feature:540810-540946:-1:exon
so has part: feature:539760-539901:-1:exon
so has part: feature:533100-537797:-1:exon

XP_010721596.3
type: Protein
SIO_000068: ncbiprotein

position:533100:-1
position: 533100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:555256-555428:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:549435-549516:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:543201-543333:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:541659-541861:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:540810-540946:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:539760-539901:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:533100-537797:-1:exon

LOC104914263
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914263
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(560573..567253)
location: region:560573-567253:-1
so has part: feature:560573-567253:-1:exon
subclass of: SO_0000010

104914263
type: Gene
SIO_000068: ncbigene

position:560573:-1
position: 560573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:567253:-1
position: 567253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:560573-567253:-1:exon

LOC104914263
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914263
product: CAAX prenyl protease 1 homolog, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 221 samples with support for all annotated introns
transcript id: XM_010723253.3
SIO_010081: LOC104914263
subclass of: SO_0000673
so part of: LOC104914263
location: complement(join(560573..561887,564613..564729,566389..566475,567077..567252))
location: region:560573-567252:-1
so has part: feature:567077-567252:-1:exon
so has part: feature:566389-566475:-1:exon
so has part: feature:564613-564729:-1:exon
so has part: feature:560573-561887:-1:exon

position:567252:-1
position: 567252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:567077-567252:-1:exon

position:567077:-1
position: 567077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:566389-566475:-1:exon

position:566389:-1
position: 566389
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:566475:-1
position: 566475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:564613-564729:-1:exon

position:564613:-1
position: 564613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:564729:-1
position: 564729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:560573-561887:-1:exon

position:561887:-1
position: 561887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104914263
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914263
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CAAX prenyl protease 1 homolog isoform X1
translation: MDSETFEKSRLYQLDKSTFSFWSGLYSELEGTMILICGGIPFLWNLSGQISGRAGFGPEYEIVQSLVFLLLATLFSALTGLPWSLYNTFVIEEKHGFNQQTLGFFFKDAIKKFIVTQCILLPVTSLLLYIIKIGGDYFFIYAWLFTLVVSLVSICLCSFQIHGLVC
SIO_010081: LOC104914263
subclass of: SO_0000673
so part of: LOC104914263
location: complement(join(561687..561887,564613..564729,566389..566475,567077..567172))
location: region:561687-567172:-1
so has part: feature:567077-567172:-1:exon
so has part: feature:566389-566475:-1:exon
so has part: feature:564613-564729:-1:exon
so has part: feature:561687-561887:-1:exon

XP_010721555.1
type: Protein
SIO_000068: ncbiprotein

position:561687:-1
position: 561687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:567172:-1
position: 567172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:567077-567172:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:566389-566475:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:564613-564729:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:561687-561887:-1:exon

LOC104914263
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914263
product: CAAX prenyl protease 1 homolog, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 69 samples with support for all annotated introns
transcript id: XM_019622779.2
SIO_010081: LOC104914263
subclass of: SO_0000673
so part of: LOC104914263
location: complement(join(562448..562682,564613..564729,566389..566475,567077..567253))
location: region:562448-567253:-1
so has part: feature:567077-567253:-1:exon
so has part: feature:566389-566475:-1:exon
so has part: feature:564613-564729:-1:exon
so has part: feature:562448-562682:-1:exon

position:562448:-1
position: 562448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:567077-567253:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:566389-566475:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:564613-564729:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:562448-562682:-1:exon

position:562682:-1
position: 562682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104914263
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914263
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CAAX prenyl protease 1 homolog isoform X2
translation: MDSETFEKSRLYQLDKSTFSFWSGLYSELEGTMILICGGIPFLWNLSGQISGRAGFGPEYEIVQSLVFLLLATLFSALTGLPWSLYNTFVIEEKHGFNQQTSSISLTQYGVFNALLERICT
SIO_010081: LOC104914263
subclass of: SO_0000673
so part of: LOC104914263
location: complement(join(562617..562682,564613..564729,566389..566475,567077..567172))
location: region:562617-567172:-1
so has part: feature:567077-567172:-1:exon
so has part: feature:566389-566475:-1:exon
so has part: feature:564613-564729:-1:exon
so has part: feature:562617-562682:-1:exon

XP_019478324.1
type: Protein
SIO_000068: ncbiprotein

position:562617:-1
position: 562617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:567077-567172:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:566389-566475:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:564613-564729:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:562617-562682:-1:exon

LOC109370948
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC109370948
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 568190..573129
location: region:568190-573129:1
so has part: feature:568190-573129:1:exon
subclass of: SO_0000011

109370948
type: Gene
SIO_000068: ncbigene

position:568190:1
position: 568190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:573129:1
position: 573129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:568190-573129:1:exon

LOC109370948
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC109370948
product: uncharacterized LOC109370948, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XR_004161961.1
SIO_010081: LOC109370948
subclass of: SO_0000673
so part of: LOC109370948
location: join(568190..568530,568612..569921)
location: region:568190-569921:1
so has part: feature:568190-568530:1:exon
so has part: feature:568612-569921:1:exon

position:569921:1
position: 569921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:568190-568530:1:exon

position:568530:1
position: 568530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:568612-569921:1:exon

position:568612:1
position: 568612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109370948
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC109370948
product: uncharacterized LOC109370948, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 69 samples with support for all annotated introns
transcript id: XR_004161962.1
SIO_010081: LOC109370948
subclass of: SO_0000673
so part of: LOC109370948
location: join(568193..568475,568612..569921)
location: region:568193-569921:1
so has part: feature:568193-568475:1:exon
so has part: feature:568612-569921:1:exon

position:568193:1
position: 568193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:568193-568475:1:exon

position:568475:1
position: 568475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:568612-569921:1:exon

LOC109370948
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC109370948
product: uncharacterized LOC109370948, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 110 samples with support for all annotated introns
transcript id: XR_002121519.2
SIO_010081: LOC109370948
subclass of: SO_0000673
so part of: LOC109370948
location: join(568195..568475,570680..573129)
location: region:568195-573129:1
so has part: feature:568195-568475:1:exon
so has part: feature:570680-573129:1:exon

position:568195:1
position: 568195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:568195-568475:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:570680-573129:1:exon

position:570680:1
position: 570680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ZMPSTE24
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: ZMPSTE24
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(574758..583276)
location: region:574758-583276:-1
so has part: feature:574758-583276:-1:exon
subclass of: SO_0000010

100544679
type: Gene
SIO_000068: ncbigene

position:574758:-1
position: 574758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:583276:-1
position: 583276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:574758-583276:-1:exon

ZMPSTE24
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: ZMPSTE24
product: zinc metallopeptidase STE24
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031556771.1
SIO_010081: ZMPSTE24
subclass of: SO_0000673
so part of: ZMPSTE24
location: complement(join(574758..576047,576375..576518,576834..576938,577645..577805,579077..579263,583256..583276))
location: region:574758-583276:-1
so has part: feature:583256-583276:-1:exon
so has part: feature:579077-579263:-1:exon
so has part: feature:577645-577805:-1:exon
so has part: feature:576834-576938:-1:exon
so has part: feature:576375-576518:-1:exon
so has part: feature:574758-576047:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:583256-583276:-1:exon

position:583256:-1
position: 583256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:579077-579263:-1:exon

position:579077:-1
position: 579077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:579263:-1
position: 579263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:577645-577805:-1:exon

position:577645:-1
position: 577645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:577805:-1
position: 577805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:576834-576938:-1:exon

position:576834:-1
position: 576834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:576938:-1
position: 576938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:576375-576518:-1:exon

position:576375:-1
position: 576375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:576518:-1
position: 576518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:574758-576047:-1:exon

position:576047:-1
position: 576047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ZMPSTE24
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: ZMPSTE24
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CAAX prenyl protease 1 homolog
translation: MVFHDDSPVVNINTKHNFGFFQVLVTIYADYIAPLFDKFIPLPEGELKQQIEVMAKSIDFPLTKVYVVEGSKRSSHSNAYFYGFFKNKRIVLFDTLLEDYSALNKEPVEGEEGENEETKSKTKNKKQGCKNEEVLAVLGHELGHWKLGHTVKNIIISQMNSFLCFFLFAVLIGRKELFAAFGFYETQPTLIGLMIIFQFIFSPYNEILSFCLTVLSRRFEFQADAFAKELGKAKDLYSALIKLNKDNLGFPVSDWIFSMWHYSHPPLLERLQALKDAKQE
SIO_010081: ZMPSTE24
subclass of: SO_0000673
so part of: ZMPSTE24
location: complement(join(575823..576047,576375..576518,576834..576938,577645..577805,579077..579263,583256..583276))
location: region:575823-583276:-1
so has part: feature:583256-583276:-1:exon
so has part: feature:579077-579263:-1:exon
so has part: feature:577645-577805:-1:exon
so has part: feature:576834-576938:-1:exon
so has part: feature:576375-576518:-1:exon
so has part: feature:575823-576047:-1:exon

XP_031412631.1
type: Protein
SIO_000068: ncbiprotein

position:575823:-1
position: 575823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:583256-583276:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:579077-579263:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:577645-577805:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:576834-576938:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:576375-576518:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:575823-576047:-1:exon

KDM1A
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: KDM1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(581938..>608727)
location: region:581938-608727:-1
so has part: feature:581938-608727:-1:exon
subclass of: SO_0000010

100544521
type: Gene
SIO_000068: ncbigene

position:581938:-1
position: 581938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:608727:-1
position: 608727
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:581938-608727:-1:exon

KDM1A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: KDM1A
product: lysine demethylase 1A
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 214 samples with support for all annotated introns
transcript id: XM_010723254.3
SIO_010081: KDM1A
subclass of: SO_0000673
so part of: KDM1A
location: complement(join(581938..585253,585904..586050,586836..586963,587993..588107,588518..588705,589451..589583,589941..590052,590331..590404,590883..591017,591921..592011,592535..592677,594288..594382,594711..594792,596627..596733,597576..597668,598349..598427,600335..600468,603852..603911,608523..>608727))
location: region:581938-608727:-1
so has part: feature:608523-608727:-1:exon
so has part: feature:603852-603911:-1:exon
so has part: feature:600335-600468:-1:exon
so has part: feature:598349-598427:-1:exon
so has part: feature:597576-597668:-1:exon
so has part: feature:596627-596733:-1:exon
so has part: feature:594711-594792:-1:exon
so has part: feature:594288-594382:-1:exon
so has part: feature:592535-592677:-1:exon
so has part: feature:591921-592011:-1:exon
so has part: feature:590883-591017:-1:exon
so has part: feature:590331-590404:-1:exon
so has part: feature:589941-590052:-1:exon
so has part: feature:589451-589583:-1:exon
so has part: feature:588518-588705:-1:exon
so has part: feature:587993-588107:-1:exon
so has part: feature:586836-586963:-1:exon
so has part: feature:585904-586050:-1:exon
so has part: feature:581938-585253:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:608523-608727:-1:exon

position:608523:-1
position: 608523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:603852-603911:-1:exon

position:603852:-1
position: 603852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:603911:-1
position: 603911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:600335-600468:-1:exon

position:600335:-1
position: 600335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:600468:-1
position: 600468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:598349-598427:-1:exon

position:598349:-1
position: 598349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:598427:-1
position: 598427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:597576-597668:-1:exon

position:597576:-1
position: 597576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:597668:-1
position: 597668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:596627-596733:-1:exon

position:596627:-1
position: 596627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:596733:-1
position: 596733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:594711-594792:-1:exon

position:594711:-1
position: 594711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:594792:-1
position: 594792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:594288-594382:-1:exon

position:594288:-1
position: 594288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:594382:-1
position: 594382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:592535-592677:-1:exon

position:592535:-1
position: 592535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:592677:-1
position: 592677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:591921-592011:-1:exon

position:591921:-1
position: 591921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:592011:-1
position: 592011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:590883-591017:-1:exon

position:590883:-1
position: 590883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:591017:-1
position: 591017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:590331-590404:-1:exon

position:590331:-1
position: 590331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:590404:-1
position: 590404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:589941-590052:-1:exon

position:589941:-1
position: 589941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:590052:-1
position: 590052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:589451-589583:-1:exon

position:589451:-1
position: 589451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:589583:-1
position: 589583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:588518-588705:-1:exon

position:588518:-1
position: 588518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:588705:-1
position: 588705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:587993-588107:-1:exon

position:587993:-1
position: 587993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:588107:-1
position: 588107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:586836-586963:-1:exon

position:586836:-1
position: 586836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:586963:-1
position: 586963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:585904-586050:-1:exon

position:585904:-1
position: 585904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:586050:-1
position: 586050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:581938-585253:-1:exon

position:585253:-1
position: 585253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

KDM1A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: KDM1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lysine-specific histone demethylase 1A
translation: QLRCVDSVLFFLQVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPPAPAEEENESEPEEPSGQAGGLQDDNSGGYGDGQASGVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLYIRNRTLQLWLDNPKIQLTFEATIQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRVKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTVLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKDLLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPAIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGAMYTLPRQPTPGVPTQQATTI
SIO_010081: KDM1A
subclass of: SO_0000673
so part of: KDM1A
location: complement(join(585068..585253,585904..586050,586836..586963,587993..588107,588518..588705,589451..589583,589941..590052,590331..590404,590883..591017,591921..592011,592535..592677,594288..594382,594711..594792,596627..596733,597576..597668,598349..598427,600335..600468,603852..603911,608523..>608727))
location: region:585068-608727:-1
so has part: feature:608523-608727:-1:exon
so has part: feature:603852-603911:-1:exon
so has part: feature:600335-600468:-1:exon
so has part: feature:598349-598427:-1:exon
so has part: feature:597576-597668:-1:exon
so has part: feature:596627-596733:-1:exon
so has part: feature:594711-594792:-1:exon
so has part: feature:594288-594382:-1:exon
so has part: feature:592535-592677:-1:exon
so has part: feature:591921-592011:-1:exon
so has part: feature:590883-591017:-1:exon
so has part: feature:590331-590404:-1:exon
so has part: feature:589941-590052:-1:exon
so has part: feature:589451-589583:-1:exon
so has part: feature:588518-588705:-1:exon
so has part: feature:587993-588107:-1:exon
so has part: feature:586836-586963:-1:exon
so has part: feature:585904-586050:-1:exon
so has part: feature:585068-585253:-1:exon

XP_010721556.2
type: Protein
SIO_000068: ncbiprotein

position:585068:-1
position: 585068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:608523-608727:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:603852-603911:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:600335-600468:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:598349-598427:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:597576-597668:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:596627-596733:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:594711-594792:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:594288-594382:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:592535-592677:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:591921-592011:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:590883-591017:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:590331-590404:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:589941-590052:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:589451-589583:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:588518-588705:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:587993-588107:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:586836-586963:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:585904-586050:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:585068-585253:-1:exon

LUZP1
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LUZP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 624253..633395
location: region:624253-633395:1
so has part: feature:624253-633395:1:exon
subclass of: SO_0000010

100544362
type: Gene
SIO_000068: ncbigene

position:624253:1
position: 624253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:633395:1
position: 633395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:624253-633395:1:exon

LUZP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LUZP1
product: leucine zipper protein 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 213 samples with support for all annotated introns
transcript id: XM_010723256.3
SIO_010081: LUZP1
subclass of: SO_0000673
so part of: LUZP1
location: join(624253..628107,631160..631324,632113..633395)
location: region:624253-633395:1
so has part: feature:624253-628107:1:exon
so has part: feature:631160-631324:1:exon
so has part: feature:632113-633395:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:624253-628107:1:exon

position:628107:1
position: 628107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:631160-631324:1:exon

position:631160:1
position: 631160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:631324:1
position: 631324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:632113-633395:1:exon

position:632113:1
position: 632113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LUZP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LUZP1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: leucine zipper protein 1
translation: MAEFTGYKETSSRHLRFKLQSLSRRLDELEEATKNLQKAEDELLELQDKVIQAEGSNSSMLADIEALRKRVLKIEGKDEEIKKAEELCRLMKEKLEEEESLTRELKSEIEHLQKRMAELEKLEEAFGRSKNDCTQLCLSLNEERNLTKKISTELEILRVKVKELEASEERMDKTEQSLTGELEKLKSLALSFISERKHFNEREKQNEKIIQELTLKLEQNNKLNRADQTRNASNLLERSSNNLLDRNDLRIEDDLTSALPSKETRRKGSVDYLKHVENEARNKSENQKNKNQEDNKVKDLTQEIERLKTQIKHFESLEEELKKMRAKNNDLQDNYLSEQNKNKLLTSQLEEIKMQIKKQKDLENGEVENEDASFSSRGKHDRAKYRVVAADFTAAKHKPREVSPQQRRERVRNRDFSFSNDSSSHGGKQTPSPSLMSRKAGKASGAAALADVAATDMKRLEEKCLVSTFSSGQKETSFTQNEGKRSKEQPSVLSRYPPAAHEQKSWKTPSKPVSELRSKAEKPSQATRGSCQTGADTRDEKSSRGESVALLAEKLKTNQGEVSDLVGDAQQSRGHCASSNGVATAYRCHISAAESDCVGSKAEAANASTASHRQPLEGRAKRAVIPQEKELADVSLESMKASPLTKRSHRSRSQEDILQILKEDAEQSAAAGHVSAGLKADSKTTQSSHEKLNSDEEMGRSKKANTESDFETRKKANSKQFSNSRGLFRASLFENDKSTVHDEDSSKCMKPSDADTGGLKSRRSFSPREALRSKAIIKPAIVEKDMKAIMGGAVTETESEKQKSVLKRSXNKMTSSITIFPSEPTVPRPSMDTAGKERHIATSNIRVAPNEPSPITNSLPQPFEVAVNRSALKLSETDRTGDAVLRSRTETVVSRSSIVIKTSEPPEKSSELPLDTASSRSHGSSDSISSETKHVTLRSSWRTRQGLHSLEDSQIKVEKNTASSPPNACRSSVDLSEMEGNSTQTNSLEQSSVRSSASTNSWNTPEMGSRRTKSNLSASELLTRRNYTGDPTTASPWHRTTLPDESKDFVSSSRRKQYGSSEYLSQADTAGRRAVPPLELQDPTSSPNTPPGLQAEDQGASRVGRPTSRR
SIO_010081: LUZP1
subclass of: SO_0000673
so part of: LUZP1
location: join(624980..628107,631160..631324,632113..632151)
location: region:624980-632151:1
so has part: feature:624980-628107:1:exon
so has part: feature:631160-631324:1:exon
so has part: feature:632113-632151:1:exon

XP_010721558.2
type: Protein
SIO_000068: ncbiprotein

position:624980:1
position: 624980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:632151:1
position: 632151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:624980-628107:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:631160-631324:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:632113-632151:1:exon

LOC116217428
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC116217428
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 652679..658357
location: region:652679-658357:1
so has part: feature:652679-658357:1:exon
subclass of: SO_0000011

116217428
type: Gene
SIO_000068: ncbigene

position:652679:1
position: 652679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:658357:1
position: 658357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:652679-658357:1:exon

LOC116217428
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC116217428
product: uncharacterized LOC116217428
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004161963.1
SIO_010081: LOC116217428
subclass of: SO_0000673
so part of: LOC116217428
location: join(652679..653409,654439..654485,655214..655254,658272..658357)
location: region:652679-658357:1
so has part: feature:652679-653409:1:exon
so has part: feature:654439-654485:1:exon
so has part: feature:655214-655254:1:exon
so has part: feature:658272-658357:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:652679-653409:1:exon

position:653409:1
position: 653409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:654439-654485:1:exon

position:654439:1
position: 654439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:654485:1
position: 654485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:655214-655254:1:exon

position:655214:1
position: 655214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:655254:1
position: 655254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:658272-658357:1:exon

position:658272:1
position: 658272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HTR1D
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: HTR1D
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 658858..660045
location: region:658858-660045:1
so has part: feature:658858-660045:1:exon
subclass of: SO_0000010

100542656
type: Gene
SIO_000068: ncbigene

position:658858:1
position: 658858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:660045:1
position: 660045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:658858-660045:1:exon

HTR1D
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: HTR1D
product: 5-hydroxytryptamine receptor 1D
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins, and 15% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_019622781.2
SIO_010081: HTR1D
subclass of: SO_0000673
so part of: HTR1D
location: 658858..660045
location: region:658858-660045:1
so has part: feature:658858-660045:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:658858-660045:1:exon

HTR1D
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: HTR1D
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 5-hydroxytryptamine receptor 1D
translation: MTQYNLTTELSLQSSANKSLNFTEPPLALDERTLLGLKISLSVLLSVITLATILANIFVVITIFFTRKLHTPANYLIGSLAVTDLLVSVLVMPISIAYTVTHTWAFGQVLCDIWLSSDITCCTASILHLCVIALDRYWAITDALEYAKRRTAGRAMLMIAVVWMISISISVPPFFWRQVKAHEEIAKCNVNTDQISYTIYSTCGAFYIPTVLLLILYGRIYVAARSRILKPPSLYGKRFTTAHLITGSAGSSLCSINASLHEGHSHSGGSPIFINHVQIKLADSILERKRISAARERKATKTLGIILGAFIFCWLPFFVMSLVLPICQDACWFHPILLDFFTWLGYLNSLINPVIYTAFNEEFKQAFQKLIHFKKCSS
SIO_010081: HTR1D
subclass of: SO_0000673
so part of: HTR1D
location: 658858..659994
location: region:658858-659994:1
so has part: feature:658858-659994:1:exon

XP_019478326.1
type: Protein
SIO_000068: ncbiprotein

position:659994:1
position: 659994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:658858-659994:1:exon

LOC109370950
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC109370950
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 694517..704486
location: region:694517-704486:1
so has part: feature:694517-704486:1:exon
subclass of: SO_0000011

109370950
type: Gene
SIO_000068: ncbigene

position:694517:1
position: 694517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:704486:1
position: 704486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:694517-704486:1:exon

LOC109370950
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC109370950
product: uncharacterized LOC109370950
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_002121520.1
SIO_010081: LOC109370950
subclass of: SO_0000673
so part of: LOC109370950
location: join(694517..694543,696770..696823,697285..704486)
location: region:694517-704486:1
so has part: feature:694517-694543:1:exon
so has part: feature:696770-696823:1:exon
so has part: feature:697285-704486:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:694517-694543:1:exon

position:694543:1
position: 694543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:696770-696823:1:exon

position:696770:1
position: 696770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:696823:1
position: 696823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:697285-704486:1:exon

position:697285:1
position: 697285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HNRNPR
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: HNRNPR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 710817..715398
location: region:710817-715398:1
so has part: feature:710817-715398:1:exon
subclass of: SO_0000010

100542498
type: Gene
SIO_000068: ncbigene

position:710817:1
position: 710817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:715398:1
position: 715398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:710817-715398:1:exon

HNRNPR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: HNRNPR
product: heterogeneous nuclear ribonucleoprotein R
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 222 samples with support for all annotated introns
transcript id: XM_010723258.3
SIO_010081: HNRNPR
subclass of: SO_0000673
so part of: HNRNPR
location: join(710817..711438,712124..712273,713797..713918,714112..715398)
location: region:710817-715398:1
so has part: feature:710817-711438:1:exon
so has part: feature:712124-712273:1:exon
so has part: feature:713797-713918:1:exon
so has part: feature:714112-715398:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:710817-711438:1:exon

position:711438:1
position: 711438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:712124-712273:1:exon

position:712124:1
position: 712124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:712273:1
position: 712273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:713797-713918:1:exon

position:713797:1
position: 713797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:713918:1
position: 713918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:714112-715398:1:exon

position:714112:1
position: 714112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HNRNPR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: HNRNPR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: heterogeneous nuclear ribonucleoprotein R
translation: MSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMNEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYYPPPRMPPPIRGRGRGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAIRGRGGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPMGPPRGARGGRGGPAQQQRGRGARGARGNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYAGNYGYNNDNQEFYQDTYGQQWK
SIO_010081: HNRNPR
subclass of: SO_0000673
so part of: HNRNPR
location: join(711349..711438,712124..712273,713797..713918,714112..714724)
location: region:711349-714724:1
so has part: feature:711349-711438:1:exon
so has part: feature:712124-712273:1:exon
so has part: feature:713797-713918:1:exon
so has part: feature:714112-714724:1:exon

XP_010721560.1
type: Protein
SIO_000068: ncbiprotein

position:711349:1
position: 711349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:714724:1
position: 714724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:711349-711438:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:712124-712273:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:713797-713918:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:714112-714724:1:exon

LOC116217429
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC116217429
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(750985..763782)
location: region:750985-763782:-1
so has part: feature:750985-763782:-1:exon
subclass of: SO_0000011

116217429
type: Gene
SIO_000068: ncbigene

position:750985:-1
position: 750985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:763782:-1
position: 763782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:750985-763782:-1:exon

LOC116217429
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC116217429
product: uncharacterized LOC116217429
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 146 samples with support for all annotated introns
transcript id: XR_004161964.1
SIO_010081: LOC116217429
subclass of: SO_0000673
so part of: LOC116217429
location: complement(join(750985..751077,755257..755348,763692..763782))
location: region:750985-763782:-1
so has part: feature:763692-763782:-1:exon
so has part: feature:755257-755348:-1:exon
so has part: feature:750985-751077:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:763692-763782:-1:exon

position:763692:-1
position: 763692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:755257-755348:-1:exon

position:755257:-1
position: 755257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:755348:-1
position: 755348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:750985-751077:-1:exon

position:751077:-1
position: 751077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PTAFR
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: PTAFR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(765211..773333)
location: region:765211-773333:-1
so has part: feature:765211-773333:-1:exon
subclass of: SO_0000010

100544050
type: Gene
SIO_000068: ncbigene

position:765211:-1
position: 765211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:773333:-1
position: 773333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:765211-773333:-1:exon

PTAFR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: PTAFR
product: platelet activating factor receptor, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 50 samples with support for all annotated introns
transcript id: XM_010723259.3
SIO_010081: PTAFR
subclass of: SO_0000673
so part of: PTAFR
location: complement(join(765211..767893,770715..770895,773185..773333))
location: region:765211-773333:-1
so has part: feature:773185-773333:-1:exon
so has part: feature:770715-770895:-1:exon
so has part: feature:765211-767893:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:773185-773333:-1:exon

position:773185:-1
position: 773185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:770715-770895:-1:exon

position:770715:-1
position: 770715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:770895:-1
position: 770895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:765211-767893:-1:exon

position:767893:-1
position: 767893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PTAFR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: PTAFR
product: platelet activating factor receptor, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_010723260.3
SIO_010081: PTAFR
subclass of: SO_0000673
so part of: PTAFR
location: complement(join(765211..767893,770715..770895,771207..771930))
location: region:765211-771930:-1
so has part: feature:771207-771930:-1:exon
so has part: feature:770715-770895:-1:exon
so has part: feature:765211-767893:-1:exon

position:771930:-1
position: 771930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:771207-771930:-1:exon

position:771207:-1
position: 771207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:770715-770895:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:765211-767893:-1:exon

PTAFR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: PTAFR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: platelet-activating factor receptor
translation: MSGEGKDGAAGNVCPIDSEFRYSLFTVFYSIIFILGFVANCYVLWIFSHIYPTKKLNEIKIFMLNLTVADLLFLVTMPLWIVYYHNHGDWIMPKFLCNVAGCLFFVNTYASVAFLMVITYNRYQAVTNPIRAAQFTTQRRGIFLSAAIWIITVGSALYYFFDDNTNVEKIGSNNYTRCFERYDSTGDVTPVLAIHVIICTLFYIIFLFILAWNIIIIRTLFSKSGQQRKNAHVKQRALWMVCTVLVVFIISFVPHHIVDVPWTLTVLEQWKKENCRLRQQLNDAHQVTLCLMSMNCVLDPVIYCFLTKKFQKHVSQNLKSMKGSRKCSRQTTDTVIEGTNHQEDAIGF
SIO_010081: PTAFR
subclass of: SO_0000673
so part of: PTAFR
location: complement(766789..767835)
location: region:766789-767835:-1
so has part: feature:766789-767835:-1:exon

XP_010721561.1
type: Protein
SIO_000068: ncbiprotein

position:766789:-1
position: 766789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:767835:-1
position: 767835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:766789-767835:-1:exon

PTAFR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: PTAFR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: platelet-activating factor receptor
translation: MSGEGKDGAAGNVCPIDSEFRYSLFTVFYSIIFILGFVANCYVLWIFSHIYPTKKLNEIKIFMLNLTVADLLFLVTMPLWIVYYHNHGDWIMPKFLCNVAGCLFFVNTYASVAFLMVITYNRYQAVTNPIRAAQFTTQRRGIFLSAAIWIITVGSALYYFFDDNTNVEKIGSNNYTRCFERYDSTGDVTPVLAIHVIICTLFYIIFLFILAWNIIIIRTLFSKSGQQRKNAHVKQRALWMVCTVLVVFIISFVPHHIVDVPWTLTVLEQWKKENCRLRQQLNDAHQVTLCLMSMNCVLDPVIYCFLTKKFQKHVSQNLKSMKGSRKCSRQTTDTVIEGTNHQEDAIGF
SIO_010081: PTAFR
subclass of: SO_0000673
so part of: PTAFR
location: complement(766789..767835)
location: region:766789-767835:-1
so has part: feature:766789-767835:-1:exon

XP_010721562.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:766789-767835:-1:exon

DNAJC8
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: DNAJC8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(778479..791576)
location: region:778479-791576:-1
so has part: feature:778479-791576:-1:exon
subclass of: SO_0000010

100544205
type: Gene
SIO_000068: ncbigene

position:778479:-1
position: 778479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:791576:-1
position: 791576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:778479-791576:-1:exon

DNAJC8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: DNAJC8
product: DnaJ heat shock protein family (Hsp40) member C8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031556772.1
SIO_010081: DNAJC8
subclass of: SO_0000673
so part of: DNAJC8
location: complement(join(778479..779262,782352..782427,783287..783378,784362..784433,785236..785330,785932..785998,787734..787790,790859..790960,791571..791576))
location: region:778479-791576:-1
so has part: feature:791571-791576:-1:exon
so has part: feature:790859-790960:-1:exon
so has part: feature:787734-787790:-1:exon
so has part: feature:785932-785998:-1:exon
so has part: feature:785236-785330:-1:exon
so has part: feature:784362-784433:-1:exon
so has part: feature:783287-783378:-1:exon
so has part: feature:782352-782427:-1:exon
so has part: feature:778479-779262:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:791571-791576:-1:exon

position:791571:-1
position: 791571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:790859-790960:-1:exon

position:790859:-1
position: 790859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:790960:-1
position: 790960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:787734-787790:-1:exon

position:787734:-1
position: 787734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:787790:-1
position: 787790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:785932-785998:-1:exon

position:785932:-1
position: 785932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:785998:-1
position: 785998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:785236-785330:-1:exon

position:785236:-1
position: 785236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:785330:-1
position: 785330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:784362-784433:-1:exon

position:784362:-1
position: 784362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:784433:-1
position: 784433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:783287-783378:-1:exon

position:783287:-1
position: 783287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:783378:-1
position: 783378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:782352-782427:-1:exon

position:782352:-1
position: 782352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:782427:-1
position: 782427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:778479-779262:-1:exon

position:779262:-1
position: 779262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DNAJC8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: DNAJC8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dnaJ homolog subfamily C member 8
translation: MTVKQIEKRDSVLTSKNQIDRLTRPGSSYFNLNPFEVLQMDPEATDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKEKKKQLKKDGKPPNVEEDDPEVFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQEKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE
SIO_010081: DNAJC8
subclass of: SO_0000673
so part of: DNAJC8
location: complement(join(779140..779262,782352..782427,783287..783378,784362..784433,785236..785330,785932..785998,787734..787790,790859..790960,791571..791576))
location: region:779140-791576:-1
so has part: feature:791571-791576:-1:exon
so has part: feature:790859-790960:-1:exon
so has part: feature:787734-787790:-1:exon
so has part: feature:785932-785998:-1:exon
so has part: feature:785236-785330:-1:exon
so has part: feature:784362-784433:-1:exon
so has part: feature:783287-783378:-1:exon
so has part: feature:782352-782427:-1:exon
so has part: feature:779140-779262:-1:exon

XP_031412632.1
type: Protein
SIO_000068: ncbiprotein

position:779140:-1
position: 779140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:791571-791576:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:790859-790960:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:787734-787790:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:785932-785998:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:785236-785330:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:784362-784433:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:783287-783378:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:782352-782427:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:779140-779262:-1:exon

XKR8
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: XKR8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 792142..793865
location: region:792142-793865:1
so has part: feature:792142-793865:1:exon
subclass of: SO_0000010

100543896
type: Gene
SIO_000068: ncbigene

position:792142:1
position: 792142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:793865:1
position: 793865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:792142-793865:1:exon

XKR8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: XKR8
product: XK related 8, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 98 samples with support for all annotated introns
transcript id: XM_010723261.3
SIO_010081: XKR8
subclass of: SO_0000673
so part of: XKR8
location: join(792142..792317,792853..792937,793097..793865)
location: region:792142-793865:1
so has part: feature:792142-792317:1:exon
so has part: feature:792853-792937:1:exon
so has part: feature:793097-793865:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:792142-792317:1:exon

position:792317:1
position: 792317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:792853-792937:1:exon

position:792853:1
position: 792853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:792937:1
position: 792937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:793097-793865:1:exon

position:793097:1
position: 793097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

XKR8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: XKR8
product: XK related 8, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 214 samples with support for all annotated introns
transcript id: XM_003212496.4
SIO_010081: XKR8
subclass of: SO_0000673
so part of: XKR8
location: join(792142..792317,792853..793864)
location: region:792142-793864:1
so has part: feature:792142-792317:1:exon
so has part: feature:792853-793864:1:exon

position:793864:1
position: 793864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:792142-792317:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:792853-793864:1:exon

XKR8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: XKR8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: XK-related protein 8 isoform X1
translation: MAFLTHDISMLRLFETFLENAPQLAVLLYSVLRSNKAEPSQGMGICTAFLCVTWSLLDYHQSLRSFLQDKYEMGWGSSVIYFLWNLFLLCPRILALALFALLWPYGVAVHFLLVWLAMFLWVSLQGTDFMESPGPEQLYRAMVAVILYFSWFNVAPGRTLHRSIIYHSFILVDSTLLTLAWLWGRPPEEQHPFLIPVLCAALPCYFLGLLLRVTYYRWLHPNVRAQPRSGGDEVDADGRADGAVEFRSISEPCELRSVSEPVLVNSRLRCLARSHFPLSVLAEPHLLNGAAAV
SIO_010081: XKR8
subclass of: SO_0000673
so part of: XKR8
location: join(792194..792317,792853..793610)
location: region:792194-793610:1
so has part: feature:792194-792317:1:exon
so has part: feature:792853-793610:1:exon

XP_003212544.2
type: Protein
SIO_000068: ncbiprotein

position:792194:1
position: 792194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:793610:1
position: 793610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:792194-792317:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:792853-793610:1:exon

XKR8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: XKR8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: XK-related protein 8 isoform X2
translation: MAFLTHDISMLRLFETFLENAPQLAVLLYSVLRSNKAEPSQGMGICTAFLCVTWSLLDYHQSLRSFLQDNLQGTDFMESPGPEQLYRAMVAVILYFSWFNVAPGRTLHRSIIYHSFILVDSTLLTLAWLWGRPPEEQHPFLIPVLCAALPCYFLGLLLRVTYYRWLHPNVRAQPRSGGDEVDADGRADGAVEFRSISEPCELRSVSEPVLVNSRLRCLARSHFPLSVLAEPHLLNGAAAV
SIO_010081: XKR8
subclass of: SO_0000673
so part of: XKR8
location: join(792194..792317,792853..792937,793097..793610)
location: region:792194-793610:1
so has part: feature:792194-792317:1:exon
so has part: feature:792853-792937:1:exon
so has part: feature:793097-793610:1:exon

XP_010721563.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:792194-792317:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:792853-792937:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:793097-793610:1:exon

EYA3
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: EYA3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(794584..824401)
location: region:794584-824401:-1
so has part: feature:794584-824401:-1:exon
subclass of: SO_0000010

100542344
type: Gene
SIO_000068: ncbigene

position:794584:-1
position: 794584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:824401:-1
position: 824401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:794584-824401:-1:exon

EYA3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: EYA3
product: EYA transcriptional coactivator and phosphatase 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 101 samples with support for all annotated introns
transcript id: XM_010723262.3
SIO_010081: EYA3
subclass of: SO_0000673
so part of: EYA3
location: complement(join(794584..797398,798226..798326,798604..798725,799109..799223,800325..800485,801285..801343,802462..802551,802725..802808,804100..804239,806105..806288,807749..807831,813223..813360,817938..818080,818718..818784,820200..820282,822120..822163,824285..824401))
location: region:794584-824401:-1
so has part: feature:824285-824401:-1:exon
so has part: feature:822120-822163:-1:exon
so has part: feature:820200-820282:-1:exon
so has part: feature:818718-818784:-1:exon
so has part: feature:817938-818080:-1:exon
so has part: feature:813223-813360:-1:exon
so has part: feature:807749-807831:-1:exon
so has part: feature:806105-806288:-1:exon
so has part: feature:804100-804239:-1:exon
so has part: feature:802725-802808:-1:exon
so has part: feature:802462-802551:-1:exon
so has part: feature:801285-801343:-1:exon
so has part: feature:800325-800485:-1:exon
so has part: feature:799109-799223:-1:exon
so has part: feature:798604-798725:-1:exon
so has part: feature:798226-798326:-1:exon
so has part: feature:794584-797398:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:824285-824401:-1:exon

position:824285:-1
position: 824285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:822120-822163:-1:exon

position:822120:-1
position: 822120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:822163:-1
position: 822163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:820200-820282:-1:exon

position:820200:-1
position: 820200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:820282:-1
position: 820282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:818718-818784:-1:exon

position:818718:-1
position: 818718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:818784:-1
position: 818784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:817938-818080:-1:exon

position:817938:-1
position: 817938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:818080:-1
position: 818080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:813223-813360:-1:exon

position:813223:-1
position: 813223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:813360:-1
position: 813360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:807749-807831:-1:exon

position:807749:-1
position: 807749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:807831:-1
position: 807831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:806105-806288:-1:exon

position:806105:-1
position: 806105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:806288:-1
position: 806288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:804100-804239:-1:exon

position:804100:-1
position: 804100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:804239:-1
position: 804239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:802725-802808:-1:exon

position:802725:-1
position: 802725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:802808:-1
position: 802808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:802462-802551:-1:exon

position:802462:-1
position: 802462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:802551:-1
position: 802551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:801285-801343:-1:exon

position:801285:-1
position: 801285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:801343:-1
position: 801343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:800325-800485:-1:exon

position:800325:-1
position: 800325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:800485:-1
position: 800485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:799109-799223:-1:exon

position:799109:-1
position: 799109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:799223:-1
position: 799223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:798604-798725:-1:exon

position:798604:-1
position: 798604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:798725:-1
position: 798725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:798226-798326:-1:exon

position:798226:-1
position: 798226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:798326:-1
position: 798326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:794584-797398:-1:exon

position:797398:-1
position: 797398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

EYA3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: EYA3
product: EYA transcriptional coactivator and phosphatase 3, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 221 samples with support for all annotated introns
transcript id: XM_010723266.3
SIO_010081: EYA3
subclass of: SO_0000673
so part of: EYA3
location: complement(join(794934..797398,798226..798326,798604..798725,799109..799223,800325..800485,801285..801343,802462..802551,802725..802808,804100..804239,806105..806288,807749..807831,817938..818080,818718..818784,820200..820279,822120..822163,824285..824401))
location: region:794934-824401:-1
so has part: feature:824285-824401:-1:exon
so has part: feature:822120-822163:-1:exon
so has part: feature:820200-820279:-1:exon
so has part: feature:818718-818784:-1:exon
so has part: feature:817938-818080:-1:exon
so has part: feature:807749-807831:-1:exon
so has part: feature:806105-806288:-1:exon
so has part: feature:804100-804239:-1:exon
so has part: feature:802725-802808:-1:exon
so has part: feature:802462-802551:-1:exon
so has part: feature:801285-801343:-1:exon
so has part: feature:800325-800485:-1:exon
so has part: feature:799109-799223:-1:exon
so has part: feature:798604-798725:-1:exon
so has part: feature:798226-798326:-1:exon
so has part: feature:794934-797398:-1:exon

position:794934:-1
position: 794934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:824285-824401:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:822120-822163:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:820200-820279:-1:exon

position:820279:-1
position: 820279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:818718-818784:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:817938-818080:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:807749-807831:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:806105-806288:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:804100-804239:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:802725-802808:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:802462-802551:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:801285-801343:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:800325-800485:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:799109-799223:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:798604-798725:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:798226-798326:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:794934-797398:-1:exon

EYA3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: EYA3
product: EYA transcriptional coactivator and phosphatase 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 101 samples with support for all annotated introns
transcript id: XM_010723263.3
SIO_010081: EYA3
subclass of: SO_0000673
so part of: EYA3
location: complement(join(794934..797398,798226..798326,798604..798725,799109..799223,800325..800485,801285..801343,802462..802551,802725..802808,804100..804239,806105..806288,807749..807831,813223..813360,817938..818080,818718..818784,820200..820279,822120..822163,824285..824401))
location: region:794934-824401:-1
so has part: feature:824285-824401:-1:exon
so has part: feature:822120-822163:-1:exon
so has part: feature:820200-820279:-1:exon
so has part: feature:818718-818784:-1:exon
so has part: feature:817938-818080:-1:exon
so has part: feature:813223-813360:-1:exon
so has part: feature:807749-807831:-1:exon
so has part: feature:806105-806288:-1:exon
so has part: feature:804100-804239:-1:exon
so has part: feature:802725-802808:-1:exon
so has part: feature:802462-802551:-1:exon
so has part: feature:801285-801343:-1:exon
so has part: feature:800325-800485:-1:exon
so has part: feature:799109-799223:-1:exon
so has part: feature:798604-798725:-1:exon
so has part: feature:798226-798326:-1:exon
so has part: feature:794934-797398:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:824285-824401:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:822120-822163:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:820200-820279:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:818718-818784:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:817938-818080:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:813223-813360:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:807749-807831:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:806105-806288:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:804100-804239:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:802725-802808:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:802462-802551:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:801285-801343:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:800325-800485:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:799109-799223:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:798604-798725:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:798226-798326:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:794934-797398:-1:exon

EYA3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: EYA3
product: EYA transcriptional coactivator and phosphatase 3, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 221 samples with support for all annotated introns
transcript id: XM_010723265.3
SIO_010081: EYA3
subclass of: SO_0000673
so part of: EYA3
location: complement(join(794934..797398,798226..798326,798604..798725,799109..799223,800325..800485,801285..801343,802462..802551,802725..802808,804100..804239,806105..806288,807749..807831,817938..818080,818718..818784,820200..820282,822120..822163,824285..824401))
location: region:794934-824401:-1
so has part: feature:824285-824401:-1:exon
so has part: feature:822120-822163:-1:exon
so has part: feature:820200-820282:-1:exon
so has part: feature:818718-818784:-1:exon
so has part: feature:817938-818080:-1:exon
so has part: feature:807749-807831:-1:exon
so has part: feature:806105-806288:-1:exon
so has part: feature:804100-804239:-1:exon
so has part: feature:802725-802808:-1:exon
so has part: feature:802462-802551:-1:exon
so has part: feature:801285-801343:-1:exon
so has part: feature:800325-800485:-1:exon
so has part: feature:799109-799223:-1:exon
so has part: feature:798604-798725:-1:exon
so has part: feature:798226-798326:-1:exon
so has part: feature:794934-797398:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:824285-824401:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:822120-822163:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:820200-820282:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:818718-818784:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:817938-818080:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:807749-807831:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:806105-806288:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:804100-804239:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:802725-802808:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:802462-802551:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:801285-801343:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:800325-800485:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:799109-799223:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:798604-798725:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:798226-798326:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:794934-797398:-1:exon

EYA3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: EYA3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: eyes absent homolog 3 isoform X4
translation: MEEPQDLPEQPVKKAKMQESREQSLSHVSNTEVSDQKPESSNLGSNLPMSTEIMTCTDYIPRSSNDYTSQMYSAKPYAHILSVPVSETMSPYPGQTQYQALQQSQPYTIYPQTTQTYGLPPFASTTNASPVSTSSTVVNISTSAVASISQEYPTYTILGQSQYQTCYPSSGFGVITPADSNAESSALATATYPSDKPNAMVPTRTVQRHSSGDASTSPSLSRATASKELDEQARKNIPGKNRGKRKADTSSSQDSELERVFLWDLDETIIIFHSLLTGSYAQKYGKDPTLVIGSGLSMEEMIFEVADTHLFFNDLEECDQVHIEDVASDDNGQDLSNYNFSTDGFSGSGSNANHSSSVGVQGGVDWMRKLAFRYRRVREIYDKYKTNVGGLLSPQKREALQRLRTDIEVLTDSWLETALKSLLLIQSRKNCVNILITTTQLVPALAKVLLYGLGEVFPIENIYSATKIGKESCFERIVSRFGKKVTYVVIGDGRDEEVAAKQHNMPFWRITNHADLVSLHQALELDFL
SIO_010081: EYA3
subclass of: SO_0000673
so part of: EYA3
location: complement(join(797318..797398,798226..798326,798604..798725,799109..799223,800325..800485,801285..801343,802462..802551,802725..802808,804100..804239,806105..806288,807749..807831,817938..818080,818718..818784,820200..820279,822120..822163,824285..824317))
location: region:797318-824317:-1
so has part: feature:824285-824317:-1:exon
so has part: feature:822120-822163:-1:exon
so has part: feature:820200-820279:-1:exon
so has part: feature:818718-818784:-1:exon
so has part: feature:817938-818080:-1:exon
so has part: feature:807749-807831:-1:exon
so has part: feature:806105-806288:-1:exon
so has part: feature:804100-804239:-1:exon
so has part: feature:802725-802808:-1:exon
so has part: feature:802462-802551:-1:exon
so has part: feature:801285-801343:-1:exon
so has part: feature:800325-800485:-1:exon
so has part: feature:799109-799223:-1:exon
so has part: feature:798604-798725:-1:exon
so has part: feature:798226-798326:-1:exon
so has part: feature:797318-797398:-1:exon

XP_010721568.1
type: Protein
SIO_000068: ncbiprotein

position:797318:-1
position: 797318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:824317:-1
position: 824317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:824285-824317:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:822120-822163:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:820200-820279:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:818718-818784:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:817938-818080:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:807749-807831:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:806105-806288:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:804100-804239:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:802725-802808:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:802462-802551:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:801285-801343:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:800325-800485:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:799109-799223:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:798604-798725:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:798226-798326:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:797318-797398:-1:exon

EYA3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: EYA3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: eyes absent homolog 3 isoform X2
translation: MEEPQDLPEQPVKKAKMQESREQSLSHVSNTEVSDQKPESSNLGSNLPMSTEIMTCTDYIPRSSNDYTSQMYSAKPYAHILSVPVSETMSPYPGQTQYQALQQSQPYTIYPQTTQTYGLPPFGALWPGMKPESGLIQTPSTSQHSVLTCTTGLTTSQPSPAHYSYSIEASTTNASPVSTSSTVVNISTSAVASISQEYPTYTILGQSQYQTCYPSSGFGVITPADSNAESSALATATYPSDKPNAMVPTRTVQRHSSGDASTSPSLSRATASKELDEQARKNIPGKNRGKRKADTSSSQDSELERVFLWDLDETIIIFHSLLTGSYAQKYGKDPTLVIGSGLSMEEMIFEVADTHLFFNDLEECDQVHIEDVASDDNGQDLSNYNFSTDGFSGSGSNANHSSSVGVQGGVDWMRKLAFRYRRVREIYDKYKTNVGGLLSPQKREALQRLRTDIEVLTDSWLETALKSLLLIQSRKNCVNILITTTQLVPALAKVLLYGLGEVFPIENIYSATKIGKESCFERIVSRFGKKVTYVVIGDGRDEEVAAKQHNMPFWRITNHADLVSLHQALELDFL
SIO_010081: EYA3
subclass of: SO_0000673
so part of: EYA3
location: complement(join(797318..797398,798226..798326,798604..798725,799109..799223,800325..800485,801285..801343,802462..802551,802725..802808,804100..804239,806105..806288,807749..807831,813223..813360,817938..818080,818718..818784,820200..820279,822120..822163,824285..824317))
location: region:797318-824317:-1
so has part: feature:824285-824317:-1:exon
so has part: feature:822120-822163:-1:exon
so has part: feature:820200-820279:-1:exon
so has part: feature:818718-818784:-1:exon
so has part: feature:817938-818080:-1:exon
so has part: feature:813223-813360:-1:exon
so has part: feature:807749-807831:-1:exon
so has part: feature:806105-806288:-1:exon
so has part: feature:804100-804239:-1:exon
so has part: feature:802725-802808:-1:exon
so has part: feature:802462-802551:-1:exon
so has part: feature:801285-801343:-1:exon
so has part: feature:800325-800485:-1:exon
so has part: feature:799109-799223:-1:exon
so has part: feature:798604-798725:-1:exon
so has part: feature:798226-798326:-1:exon
so has part: feature:797318-797398:-1:exon

XP_010721565.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:824285-824317:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:822120-822163:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:820200-820279:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:818718-818784:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:817938-818080:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:813223-813360:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:807749-807831:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:806105-806288:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:804100-804239:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:802725-802808:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:802462-802551:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:801285-801343:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:800325-800485:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:799109-799223:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:798604-798725:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:798226-798326:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:797318-797398:-1:exon

EYA3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: EYA3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: eyes absent homolog 3 isoform X3
translation: MEEPQDLPEQPVKKAKMQESREQSLSSHVSNTEVSDQKPESSNLGSNLPMSTEIMTCTDYIPRSSNDYTSQMYSAKPYAHILSVPVSETMSPYPGQTQYQALQQSQPYTIYPQTTQTYGLPPFASTTNASPVSTSSTVVNISTSAVASISQEYPTYTILGQSQYQTCYPSSGFGVITPADSNAESSALATATYPSDKPNAMVPTRTVQRHSSGDASTSPSLSRATASKELDEQARKNIPGKNRGKRKADTSSSQDSELERVFLWDLDETIIIFHSLLTGSYAQKYGKDPTLVIGSGLSMEEMIFEVADTHLFFNDLEECDQVHIEDVASDDNGQDLSNYNFSTDGFSGSGSNANHSSSVGVQGGVDWMRKLAFRYRRVREIYDKYKTNVGGLLSPQKREALQRLRTDIEVLTDSWLETALKSLLLIQSRKNCVNILITTTQLVPALAKVLLYGLGEVFPIENIYSATKIGKESCFERIVSRFGKKVTYVVIGDGRDEEVAAKQHNMPFWRITNHADLVSLHQALELDFL
SIO_010081: EYA3
subclass of: SO_0000673
so part of: EYA3
location: complement(join(797318..797398,798226..798326,798604..798725,799109..799223,800325..800485,801285..801343,802462..802551,802725..802808,804100..804239,806105..806288,807749..807831,817938..818080,818718..818784,820200..820282,822120..822163,824285..824317))
location: region:797318-824317:-1
so has part: feature:824285-824317:-1:exon
so has part: feature:822120-822163:-1:exon
so has part: feature:820200-820282:-1:exon
so has part: feature:818718-818784:-1:exon
so has part: feature:817938-818080:-1:exon
so has part: feature:807749-807831:-1:exon
so has part: feature:806105-806288:-1:exon
so has part: feature:804100-804239:-1:exon
so has part: feature:802725-802808:-1:exon
so has part: feature:802462-802551:-1:exon
so has part: feature:801285-801343:-1:exon
so has part: feature:800325-800485:-1:exon
so has part: feature:799109-799223:-1:exon
so has part: feature:798604-798725:-1:exon
so has part: feature:798226-798326:-1:exon
so has part: feature:797318-797398:-1:exon

XP_010721567.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:824285-824317:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:822120-822163:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:820200-820282:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:818718-818784:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:817938-818080:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:807749-807831:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:806105-806288:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:804100-804239:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:802725-802808:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:802462-802551:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:801285-801343:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:800325-800485:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:799109-799223:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:798604-798725:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:798226-798326:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:797318-797398:-1:exon

EYA3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: EYA3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: eyes absent homolog 3 isoform X1
translation: MEEPQDLPEQPVKKAKMQESREQSLSSHVSNTEVSDQKPESSNLGSNLPMSTEIMTCTDYIPRSSNDYTSQMYSAKPYAHILSVPVSETMSPYPGQTQYQALQQSQPYTIYPQTTQTYGLPPFGALWPGMKPESGLIQTPSTSQHSVLTCTTGLTTSQPSPAHYSYSIEASTTNASPVSTSSTVVNISTSAVASISQEYPTYTILGQSQYQTCYPSSGFGVITPADSNAESSALATATYPSDKPNAMVPTRTVQRHSSGDASTSPSLSRATASKELDEQARKNIPGKNRGKRKADTSSSQDSELERVFLWDLDETIIIFHSLLTGSYAQKYGKDPTLVIGSGLSMEEMIFEVADTHLFFNDLEECDQVHIEDVASDDNGQDLSNYNFSTDGFSGSGSNANHSSSVGVQGGVDWMRKLAFRYRRVREIYDKYKTNVGGLLSPQKREALQRLRTDIEVLTDSWLETALKSLLLIQSRKNCVNILITTTQLVPALAKVLLYGLGEVFPIENIYSATKIGKESCFERIVSRFGKKVTYVVIGDGRDEEVAAKQHNMPFWRITNHADLVSLHQALELDFL
SIO_010081: EYA3
subclass of: SO_0000673
so part of: EYA3
location: complement(join(797318..797398,798226..798326,798604..798725,799109..799223,800325..800485,801285..801343,802462..802551,802725..802808,804100..804239,806105..806288,807749..807831,813223..813360,817938..818080,818718..818784,820200..820282,822120..822163,824285..824317))
location: region:797318-824317:-1
so has part: feature:824285-824317:-1:exon
so has part: feature:822120-822163:-1:exon
so has part: feature:820200-820282:-1:exon
so has part: feature:818718-818784:-1:exon
so has part: feature:817938-818080:-1:exon
so has part: feature:813223-813360:-1:exon
so has part: feature:807749-807831:-1:exon
so has part: feature:806105-806288:-1:exon
so has part: feature:804100-804239:-1:exon
so has part: feature:802725-802808:-1:exon
so has part: feature:802462-802551:-1:exon
so has part: feature:801285-801343:-1:exon
so has part: feature:800325-800485:-1:exon
so has part: feature:799109-799223:-1:exon
so has part: feature:798604-798725:-1:exon
so has part: feature:798226-798326:-1:exon
so has part: feature:797318-797398:-1:exon

XP_010721564.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:824285-824317:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:822120-822163:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:820200-820282:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:818718-818784:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:817938-818080:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:813223-813360:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:807749-807831:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:806105-806288:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:804100-804239:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:802725-802808:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:802462-802551:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:801285-801343:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:800325-800485:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:799109-799223:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:798604-798725:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:798226-798326:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:797318-797398:-1:exon

SMPDL3B
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: SMPDL3B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 824316..829854
location: region:824316-829854:1
so has part: feature:824316-829854:1:exon
subclass of: SO_0000010

100543740
type: Gene
SIO_000068: ncbigene

position:824316:1
position: 824316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:829854:1
position: 829854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:824316-829854:1:exon

SMPDL3B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: SMPDL3B
product: sphingomyelin phosphodiesterase acid like 3B
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_010723298.3
SIO_010081: SMPDL3B
subclass of: SO_0000673
so part of: SMPDL3B
location: join(824316..824330,824887..825053,826148..826245,826804..826947,827527..827699,827862..828042,828635..828768,829341..829854)
location: region:824316-829854:1
so has part: feature:824316-824330:1:exon
so has part: feature:824887-825053:1:exon
so has part: feature:826148-826245:1:exon
so has part: feature:826804-826947:1:exon
so has part: feature:827527-827699:1:exon
so has part: feature:827862-828042:1:exon
so has part: feature:828635-828768:1:exon
so has part: feature:829341-829854:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:824316-824330:1:exon

position:824330:1
position: 824330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:824887-825053:1:exon

position:824887:1
position: 824887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:825053:1
position: 825053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:826148-826245:1:exon

position:826148:1
position: 826148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:826245:1
position: 826245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:826804-826947:1:exon

position:826804:1
position: 826804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:826947:1
position: 826947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:827527-827699:1:exon

position:827527:1
position: 827527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:827699:1
position: 827699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:827862-828042:1:exon

position:827862:1
position: 827862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:828042:1
position: 828042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:828635-828768:1:exon

position:828635:1
position: 828635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:828768:1
position: 828768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:829341-829854:1:exon

position:829341:1
position: 829341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SMPDL3B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: SMPDL3B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: acid sphingomyelinase-like phosphodiesterase 3b
translation: MGILIAAVAAGQRCPSGGSEASPGAGLWGSYLCDAPWGLLSSAVFAMRRLLPRPDFVLWTGDDTPHVPDEQLGEEKVLHIIENLTSLIKQVFPDTKVYAAMGNHDFHPKNQLPGKENRIYNQTAELWRSWLNETSVPLFRAGAFYSEKLPSSDTRGRMIVLNTNLYYDQNNQTAGEEDPGGQFQWLEETLTNASKAEEMVYIVGHIPPGFFEKKRGKPWFRRDFNERYLKIVQKHHRVIAAQFFGHHHTDSFRMFYSDSGSPINVMFLAPGVTPWKTTLPGVNNGANNPGIRVIDYDADTLQVQDVVTYYLNLTHANLVVPAWEEEYRLTSAFQVPDGSTHSMQAVLEKISRDAKYLQQYYEFNSVKYDLTLCGESCRVDHVCAIREIDFTRYEECLKANNSTSAIVSVCLLLLSLLLGIFGPQQTL
SIO_010081: SMPDL3B
subclass of: SO_0000673
so part of: SMPDL3B
location: join(824316..824330,824887..825053,826148..826245,826804..826947,827527..827699,827862..828042,828635..828768,829341..829712)
location: region:824316-829712:1
so has part: feature:824316-824330:1:exon
so has part: feature:824887-825053:1:exon
so has part: feature:826148-826245:1:exon
so has part: feature:826804-826947:1:exon
so has part: feature:827527-827699:1:exon
so has part: feature:827862-828042:1:exon
so has part: feature:828635-828768:1:exon
so has part: feature:829341-829712:1:exon

XP_010721600.1
type: Protein
SIO_000068: ncbiprotein

position:829712:1
position: 829712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:824316-824330:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:824887-825053:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:826148-826245:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:826804-826947:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:827527-827699:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:827862-828042:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:828635-828768:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:829341-829712:1:exon

THEMIS2
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: THEMIS2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 833968..838679
location: region:833968-838679:1
so has part: feature:833968-838679:1:exon
subclass of: SO_0000010

100543585
type: Gene
SIO_000068: ncbigene

position:833968:1
position: 833968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:838679:1
position: 838679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:833968-838679:1:exon

THEMIS2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: THEMIS2
product: thymocyte selection associated family member 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 131 samples with support for all annotated introns
transcript id: XM_010723267.3
SIO_010081: THEMIS2
subclass of: SO_0000673
so part of: THEMIS2
location: join(833968..834260,835542..835682,835795..835995,836156..837367,837903..838679)
location: region:833968-838679:1
so has part: feature:833968-834260:1:exon
so has part: feature:835542-835682:1:exon
so has part: feature:835795-835995:1:exon
so has part: feature:836156-837367:1:exon
so has part: feature:837903-838679:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:833968-834260:1:exon

position:834260:1
position: 834260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:835542-835682:1:exon

position:835542:1
position: 835542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:835682:1
position: 835682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:835795-835995:1:exon

position:835795:1
position: 835795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:835995:1
position: 835995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:836156-837367:1:exon

position:836156:1
position: 836156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:837367:1
position: 837367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:837903-838679:1:exon

position:837903:1
position: 837903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

THEMIS2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: THEMIS2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein THEMIS2
translation: MEPLSFQEYICSLDPATLPRILRICSGVYFQGSVYEISGNECCLSTGDLLKVTAVTLQKVICENVQTGQKTELPPTFKGLFQLSSAPSPCPTPQGPSRPGSRQKGLTLQQAVGQSGGQTQPLLCPSISPHALLLSPVYEVQATMHLRRDQVKIPSTLEVDVEDVTEESQDVHFARPLLLSELLRMEEVLPAQAEILEGPNSAAIFESSWASRLQKGQRLQIHGCSHSWRVLASARNSARRFLLSSAYQGRFRRRPRQFAGVQELASGLQPGQRLHVVVTQDCEGRGDDVPPLSVGDRLEARRLLQNASSTRLLCQRRSEEEDGEDEEGEELLLPLDLGGSFVEEVCDSKKYGLAELLERLMLPCDVRVVATDPALERDVLGSFSSLRLEARISQPFLLGSFCEEPDEGFEIPPQWLDLSLVLTGEPVGTQTPSTHHSHVEELTEAFYYQLLAQLPGGSAPPPPRPPKSKAASEKAQPHMGRAQGQKNQTHPRGSCPPTPQHPASPQAHPAPSLPLKAKSLPIQQSTPNKYSPCPYRLAAPQLHDAPGDTDMKRSSDEHDYEIIEDSIQKMIRKAQAILPF
SIO_010081: THEMIS2
subclass of: SO_0000673
so part of: THEMIS2
location: join(834167..834260,835542..835682,835795..835995,836156..837367,837903..837997)
location: region:834167-837997:1
so has part: feature:834167-834260:1:exon
so has part: feature:835542-835682:1:exon
so has part: feature:835795-835995:1:exon
so has part: feature:836156-837367:1:exon
so has part: feature:837903-837997:1:exon

XP_010721569.1
type: Protein
SIO_000068: ncbiprotein

position:834167:1
position: 834167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:837997:1
position: 837997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:834167-834260:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:835542-835682:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:835795-835995:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:836156-837367:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:837903-837997:1:exon

RPA2
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: RPA2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(840151..843969)
location: region:840151-843969:-1
so has part: feature:840151-843969:-1:exon
subclass of: SO_0000010

100542097
type: Gene
SIO_000068: ncbigene

position:840151:-1
position: 840151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:843969:-1
position: 843969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840151-843969:-1:exon

RPA2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: RPA2
product: replication protein A2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 221 samples with support for all annotated introns
transcript id: XM_003212485.4
SIO_010081: RPA2
subclass of: SO_0000673
so part of: RPA2
location: complement(join(840151..840771,841201..841295,841476..841583,841900..842013,842380..842454,843278..843391,843479..843580,843680..843774,843853..843969))
location: region:840151-843969:-1
so has part: feature:843853-843969:-1:exon
so has part: feature:843680-843774:-1:exon
so has part: feature:843479-843580:-1:exon
so has part: feature:843278-843391:-1:exon
so has part: feature:842380-842454:-1:exon
so has part: feature:841900-842013:-1:exon
so has part: feature:841476-841583:-1:exon
so has part: feature:841201-841295:-1:exon
so has part: feature:840151-840771:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:843853-843969:-1:exon

position:843853:-1
position: 843853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:843680-843774:-1:exon

position:843680:-1
position: 843680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:843774:-1
position: 843774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:843479-843580:-1:exon

position:843479:-1
position: 843479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:843580:-1
position: 843580
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:843278-843391:-1:exon

position:843278:-1
position: 843278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:843391:-1
position: 843391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:842380-842454:-1:exon

position:842380:-1
position: 842380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:842454:-1
position: 842454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:841900-842013:-1:exon

position:841900:-1
position: 841900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:842013:-1
position: 842013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:841476-841583:-1:exon

position:841476:-1
position: 841476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:841583:-1
position: 841583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:841201-841295:-1:exon

position:841201:-1
position: 841201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:841295:-1
position: 841295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:840151-840771:-1:exon

position:840771:-1
position: 840771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RPA2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: RPA2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: replication protein A 32 kDa subunit
translation: MWGGHGNFDGGYGPAGGYTQSPGGFSSPTGAQAEKKQRSRSQSIVPCTVSQLLAAEQVDEAFRIHDVEISQVTVVGIVRHAEKAPTNILYKVDDMTAAPMDVRQWVDTDEAGSENIVVPPGTYVKVAGHLRSFQNKKSLVAFKIMPLENMNEFTTHILETVNAHMILRKNLMLASRAPQSFTSAGMSDVGSYGGGSLPVNGLTAHQSQVLNLIKNCHSPEGMSLQELKLQLHNVSIPTIKQAVEFLSSEGHIYSTVDDDHYKSTDAD
SIO_010081: RPA2
subclass of: SO_0000673
so part of: RPA2
location: complement(join(840687..840771,841201..841295,841476..841583,841900..842013,842380..842454,843278..843391,843479..843580,843680..843774,843853..843868))
location: region:840687-843868:-1
so has part: feature:843853-843868:-1:exon
so has part: feature:843680-843774:-1:exon
so has part: feature:843479-843580:-1:exon
so has part: feature:843278-843391:-1:exon
so has part: feature:842380-842454:-1:exon
so has part: feature:841900-842013:-1:exon
so has part: feature:841476-841583:-1:exon
so has part: feature:841201-841295:-1:exon
so has part: feature:840687-840771:-1:exon

XP_003212533.1
type: Protein
SIO_000068: ncbiprotein

position:840687:-1
position: 840687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:843868:-1
position: 843868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:843853-843868:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:843680-843774:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:843479-843580:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:843278-843391:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:842380-842454:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:841900-842013:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:841476-841583:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:841201-841295:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:840687-840771:-1:exon

PPP1R8
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: PPP1R8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 844246..864202
location: region:844246-864202:1
so has part: feature:844246-864202:1:exon
subclass of: SO_0000010

100543431
type: Gene
SIO_000068: ncbigene

position:844246:1
position: 844246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:864202:1
position: 864202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:844246-864202:1:exon

PPP1R8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: PPP1R8
product: protein phosphatase 1 regulatory subunit 8
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 89% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031556773.1
SIO_010081: PPP1R8
subclass of: SO_0000673
so part of: PPP1R8
location: join(844246..844477,845230..845378,846305..846363,854183..854243,857773..857926,858494..858714,859393..859537,860616..860680,861537..864202)
location: region:844246-864202:1
so has part: feature:844246-844477:1:exon
so has part: feature:845230-845378:1:exon
so has part: feature:846305-846363:1:exon
so has part: feature:854183-854243:1:exon
so has part: feature:857773-857926:1:exon
so has part: feature:858494-858714:1:exon
so has part: feature:859393-859537:1:exon
so has part: feature:860616-860680:1:exon
so has part: feature:861537-864202:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:844246-844477:1:exon

position:844477:1
position: 844477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:845230-845378:1:exon

position:845230:1
position: 845230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:845378:1
position: 845378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:846305-846363:1:exon

position:846305:1
position: 846305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:846363:1
position: 846363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:854183-854243:1:exon

position:854183:1
position: 854183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:854243:1
position: 854243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:857773-857926:1:exon

position:857773:1
position: 857773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:857926:1
position: 857926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:858494-858714:1:exon

position:858494:1
position: 858494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:858714:1
position: 858714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:859393-859537:1:exon

position:859393:1
position: 859393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:859537:1
position: 859537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:860616-860680:1:exon

position:860616:1
position: 860616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:860680:1
position: 860680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:861537-864202:1:exon

position:861537:1
position: 861537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PPP1R8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: PPP1R8
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: nuclear inhibitor of protein phosphatase 1
translation: MGLSRCSTGPRSAARGWMGTAGLKGDGSFWCELSARVCVAAGPDCTVIRLRVRAVRAGLQRSMSRCKDNVLLSFRLNQQFLKKYRVERKTVPVKGLFSSIAFWLCCRQGRGSQPSSFLHRAAADLTQILAGRALDAQKPSHFRESSWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEAHKPQQIPIDSTVSFGASTRAYTLREKPQTLPSAVKGDEKMGGEDEELKGLLGLPEEETELDNLTEFNTAHNKRISTLTIEEGNLDIQRPKRKRKNSRVTFSDDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRLDNPGSLTTDDSATRRMQNFPYSGGLYGGLPPTHNEAGSQSHGVHGTALIGGLPMPYPNLAPDVDLTPVVPSTVNMNPAPNPAVFNPEAVNEPKKKKYXKGGMAGQEANPFPADLS
SIO_010081: PPP1R8
subclass of: SO_0000673
so part of: PPP1R8
location: join(844246..844477,845230..845378,846305..846363,854183..854243,857773..857926,858494..858714,859393..859537,860616..860680,861537..861895)
location: region:844246-861895:1
so has part: feature:844246-844477:1:exon
so has part: feature:845230-845378:1:exon
so has part: feature:846305-846363:1:exon
so has part: feature:854183-854243:1:exon
so has part: feature:857773-857926:1:exon
so has part: feature:858494-858714:1:exon
so has part: feature:859393-859537:1:exon
so has part: feature:860616-860680:1:exon
so has part: feature:861537-861895:1:exon

XP_031412633.1
type: Protein
SIO_000068: ncbiprotein

position:861895:1
position: 861895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:844246-844477:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:845230-845378:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:846305-846363:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:854183-854243:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:857773-857926:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:858494-858714:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:859393-859537:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:860616-860680:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:861537-861895:1:exon

LOC116217443
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC116217443
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 856462..856627
location: region:856462-856627:1
so has part: feature:856462-856627:1:exon
subclass of: SO_0000979

116217443
type: Gene
SIO_000068: ncbigene

position:856462:1
position: 856462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:856627:1
position: 856627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:856462-856627:1:exon

LOC116217443
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: guide_RNA
gene: LOC116217443
product: small Cajal body-specific RNA 1
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00553
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004161989.1
SIO_010081: LOC116217443
subclass of: SO_0000673
so part of: LOC116217443
location: 856462..856627
location: region:856462-856627:1
so has part: feature:856462-856627:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:856462-856627:1:exon

STX12
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: STX12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 868515..880238
location: region:868515-880238:1
so has part: feature:868515-880238:1:exon
subclass of: SO_0000010

100543272
type: Gene
SIO_000068: ncbigene

position:868515:1
position: 868515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:880238:1
position: 880238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:868515-880238:1:exon

STX12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: STX12
product: syntaxin 12, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 59 samples with support for all annotated introns
transcript id: XM_019622782.2
SIO_010081: STX12
subclass of: SO_0000673
so part of: STX12
location: join(868515..868628,871339..871408,872326..872425,873702..873839,874288..874331,875786..875857,876174..876279,876764..876836,876999..877081,878785..880238)
location: region:868515-880238:1
so has part: feature:868515-868628:1:exon
so has part: feature:871339-871408:1:exon
so has part: feature:872326-872425:1:exon
so has part: feature:873702-873839:1:exon
so has part: feature:874288-874331:1:exon
so has part: feature:875786-875857:1:exon
so has part: feature:876174-876279:1:exon
so has part: feature:876764-876836:1:exon
so has part: feature:876999-877081:1:exon
so has part: feature:878785-880238:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:868515-868628:1:exon

position:868628:1
position: 868628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:871339-871408:1:exon

position:871339:1
position: 871339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:871408:1
position: 871408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:872326-872425:1:exon

position:872326:1
position: 872326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:872425:1
position: 872425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:873702-873839:1:exon

position:873702:1
position: 873702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:873839:1
position: 873839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:874288-874331:1:exon

position:874288:1
position: 874288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:874331:1
position: 874331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:875786-875857:1:exon

position:875786:1
position: 875786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:875857:1
position: 875857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:876174-876279:1:exon

position:876174:1
position: 876174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:876279:1
position: 876279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:876764-876836:1:exon

position:876764:1
position: 876764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:876836:1
position: 876836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:876999-877081:1:exon

position:876999:1
position: 876999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:877081:1
position: 877081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:878785-880238:1:exon

position:878785:1
position: 878785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

STX12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: STX12
product: syntaxin 12, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 220 samples with support for all annotated introns
transcript id: XM_010723269.3
SIO_010081: STX12
subclass of: SO_0000673
so part of: STX12
location: join(868515..868628,871339..871408,872326..872425,873702..873839,874288..874331,876174..876279,876764..876836,876999..877081,878785..880238)
location: region:868515-880238:1
so has part: feature:868515-868628:1:exon
so has part: feature:871339-871408:1:exon
so has part: feature:872326-872425:1:exon
so has part: feature:873702-873839:1:exon
so has part: feature:874288-874331:1:exon
so has part: feature:876174-876279:1:exon
so has part: feature:876764-876836:1:exon
so has part: feature:876999-877081:1:exon
so has part: feature:878785-880238:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:868515-868628:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:871339-871408:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:872326-872425:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:873702-873839:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:874288-874331:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:876174-876279:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:876764-876836:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:876999-877081:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:878785-880238:1:exon

STX12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: STX12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: syntaxin-12 isoform X1
translation: MSYGPLDPYRAGPTAPPRDFGAIIQTCSGNVQRIAQYTAQIKNLMSQLGTKQDSSKLQENLQQLQHSANCLAKETNEYLKELGSLPLPLSASEQRQQRLQKERLMNDFSAALNNFQAVQRQVSEKEKETVARARAGSRISADERFREEQLVSFDRLLSIKTFTLIDSPLFVGDGERKGSGEDWNQMQSQEDDVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDMIDSIEANVESAEVHVERASEQLQRAAYYQKKSRKKICILILGLAVASIILGLIIWWTAK
SIO_010081: STX12
subclass of: SO_0000673
so part of: STX12
location: join(868517..868628,871339..871408,872326..872425,873702..873839,874288..874331,875786..875857,876174..876279,876764..876836,876999..877081,878785..878877)
location: region:868517-878877:1
so has part: feature:868517-868628:1:exon
so has part: feature:871339-871408:1:exon
so has part: feature:872326-872425:1:exon
so has part: feature:873702-873839:1:exon
so has part: feature:874288-874331:1:exon
so has part: feature:875786-875857:1:exon
so has part: feature:876174-876279:1:exon
so has part: feature:876764-876836:1:exon
so has part: feature:876999-877081:1:exon
so has part: feature:878785-878877:1:exon

XP_019478327.1
type: Protein
SIO_000068: ncbiprotein

position:868517:1
position: 868517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:878877:1
position: 878877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:868517-868628:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:871339-871408:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:872326-872425:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:873702-873839:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:874288-874331:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:875786-875857:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:876174-876279:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:876764-876836:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:876999-877081:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:878785-878877:1:exon

STX12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: STX12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: syntaxin-12 isoform X2
translation: MSYGPLDPYRAGPTAPPRDFGAIIQTCSGNVQRIAQYTAQIKNLMSQLGTKQDSSKLQENLQQLQHSANCLAKETNEYLKELGSLPLPLSASEQRQQRLQKERLMNDFSAALNNFQAVQRQVSEKEKETVARARAGSRISADERFREEQLVSFDSGEDWNQMQSQEDDVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDMIDSIEANVESAEVHVERASEQLQRAAYYQKKSRKKICILILGLAVASIILGLIIWWTAK
SIO_010081: STX12
subclass of: SO_0000673
so part of: STX12
location: join(868517..868628,871339..871408,872326..872425,873702..873839,874288..874331,876174..876279,876764..876836,876999..877081,878785..878877)
location: region:868517-878877:1
so has part: feature:868517-868628:1:exon
so has part: feature:871339-871408:1:exon
so has part: feature:872326-872425:1:exon
so has part: feature:873702-873839:1:exon
so has part: feature:874288-874331:1:exon
so has part: feature:876174-876279:1:exon
so has part: feature:876764-876836:1:exon
so has part: feature:876999-877081:1:exon
so has part: feature:878785-878877:1:exon

XP_010721571.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:868517-868628:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:871339-871408:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:872326-872425:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:873702-873839:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:874288-874331:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:876174-876279:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:876764-876836:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:876999-877081:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:878785-878877:1:exon

LOC100541944
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC100541944
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 881186..883238
location: region:881186-883238:1
so has part: feature:881186-883238:1:exon
subclass of: SO_0000010

100541944
type: Gene
SIO_000068: ncbigene

position:881186:1
position: 881186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:883238:1
position: 883238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:881186-883238:1:exon

LOC100541944
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC100541944
product: cbp/p300-interacting transactivator 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_003212484.2
SIO_010081: LOC100541944
subclass of: SO_0000673
so part of: LOC100541944
location: 881186..883238
location: region:881186-883238:1
so has part: feature:881186-883238:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:881186-883238:1:exon

LOC100541944
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC100541944
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cbp/p300-interacting transactivator 3
translation: MAEHMMMSMNHGGTGLQSYRMGVSGLQGPPQHGQHVLRTLPAAGQMMPYGGAGMDGAMRPRPNLSGQMSHHQMQNAMMFNGPSQQQQQYMGPVGTQQLMASMHLQKLNTQYQGHPLGMSNGPMGAGAQQYRVGPSQHPGMQHMPSPALTLNVMDTDLIDEEVLTSLVLELGLDRIQELPELFLGQNEFDFISDFVSKQQPSAISC
SIO_010081: LOC100541944
subclass of: SO_0000673
so part of: LOC100541944
location: 881357..881974
location: region:881357-881974:1
so has part: feature:881357-881974:1:exon

XP_003212532.1
type: Protein
SIO_000068: ncbiprotein

position:881357:1
position: 881357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:881974:1
position: 881974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:881357-881974:1:exon

LOC100543118
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC100543118
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 891774..895395
location: region:891774-895395:1
so has part: feature:891774-895395:1:exon
subclass of: SO_0000010

100543118
type: Gene
SIO_000068: ncbigene

position:891774:1
position: 891774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:895395:1
position: 895395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:891774-895395:1:exon

LOC100543118
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC100543118
product: guanylate-binding protein 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_019622724.2
SIO_010081: LOC100543118
subclass of: SO_0000673
so part of: LOC100543118
location: join(891774..891978,892072..892184,892279..892400,892486..892679,892799..892951,893022..893122,893243..893627,893710..893837,893913..894022,894116..894300,894371..894613,894697..894797,895342..895395)
location: region:891774-895395:1
so has part: feature:891774-891978:1:exon
so has part: feature:892072-892184:1:exon
so has part: feature:892279-892400:1:exon
so has part: feature:892486-892679:1:exon
so has part: feature:892799-892951:1:exon
so has part: feature:893022-893122:1:exon
so has part: feature:893243-893627:1:exon
so has part: feature:893710-893837:1:exon
so has part: feature:893913-894022:1:exon
so has part: feature:894116-894300:1:exon
so has part: feature:894371-894613:1:exon
so has part: feature:894697-894797:1:exon
so has part: feature:895342-895395:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:891774-891978:1:exon

position:891978:1
position: 891978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:892072-892184:1:exon

position:892072:1
position: 892072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:892184:1
position: 892184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:892279-892400:1:exon

position:892279:1
position: 892279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:892400:1
position: 892400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:892486-892679:1:exon

position:892486:1
position: 892486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:892679:1
position: 892679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:892799-892951:1:exon

position:892799:1
position: 892799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:892951:1
position: 892951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:893022-893122:1:exon

position:893022:1
position: 893022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:893122:1
position: 893122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:893243-893627:1:exon

position:893243:1
position: 893243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:893627:1
position: 893627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:893710-893837:1:exon

position:893710:1
position: 893710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:893837:1
position: 893837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:893913-894022:1:exon

position:893913:1
position: 893913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:894022:1
position: 894022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:894116-894300:1:exon

position:894116:1
position: 894116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:894300:1
position: 894300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:894371-894613:1:exon

position:894371:1
position: 894371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:894613:1
position: 894613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:894697-894797:1:exon

position:894697:1
position: 894697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:894797:1
position: 894797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:895342-895395:1:exon

position:895342:1
position: 895342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100543118
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC100543118
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: guanylate-binding protein 1-like
translation: MEQLAGSGCSFPGSPGLWMWRCPHPEWPDRELLLLHAGGFLGGEEPEDAAGLRLFMLQLLLGSVLVYGSGDGSGDGSGDAQEQLELLTYAQKLPHHLRLLEEEEDEEDEDHLLRFVLPPFVWSLCSTAQTPEDEELLEDEDHKLESALGGPPGPVARCVLTLFPEQKLFRVADSSAEGLTRLCTHLLGCDPKTEPGGAEVGGAYLAALAERVVDAMEEDTVLRIGRLCQEAKEMAQQETGDKWPTATNFWQDDTSLRNSDTSDTIPQHDDIPQASTSPGHDDTDGDTTQQQEDAAWVEAPSPHPLSPMPAPLCLVYNSDSNNLSLNPRALAVLRGITQPVVVVAIAGPYRTGKSFLMNRLAERRTGFPLGPTVRAETKGIWMWCLPHPRQHGVALVLLDTEGLGDPQKGDNSNDSWIFSLALLFSSTLVYNSMGTIDQHALDQLRLVTELTNHIRVRVEDEDPAAEYSRVFPSFVWAVRDFTLQLREGERLLTEDEYLEDALCLKPGNGRVVQEHNELRRCLRAFFTHRKLFVLERPTADKNLARLEEVREDELQPRFRQQADAFCQHIWEKAPVKELPGGRRVTGIMLASLVEKYVATIVKGEVPCVESTVAALARTENTHGEMMVNPDNLLQGPEI
SIO_010081: LOC100543118
subclass of: SO_0000673
so part of: LOC100543118
location: join(891951..891978,892072..892184,892279..892400,892486..892679,892799..892951,893022..893122,893243..893627,893710..893837,893913..894022,894116..894300,894371..894613,894697..894797,895342..895395)
location: region:891951-895395:1
so has part: feature:891951-891978:1:exon
so has part: feature:892072-892184:1:exon
so has part: feature:892279-892400:1:exon
so has part: feature:892486-892679:1:exon
so has part: feature:892799-892951:1:exon
so has part: feature:893022-893122:1:exon
so has part: feature:893243-893627:1:exon
so has part: feature:893710-893837:1:exon
so has part: feature:893913-894022:1:exon
so has part: feature:894116-894300:1:exon
so has part: feature:894371-894613:1:exon
so has part: feature:894697-894797:1:exon
so has part: feature:895342-895395:1:exon

XP_019478269.2
type: Protein
SIO_000068: ncbiprotein

position:891951:1
position: 891951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:891951-891978:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:892072-892184:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:892279-892400:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:892486-892679:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:892799-892951:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:893022-893122:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:893243-893627:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:893710-893837:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:893913-894022:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:894116-894300:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:894371-894613:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:894697-894797:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:895342-895395:1:exon

LOC109370953
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC109370953
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(907298..915012)
location: region:907298-915012:-1
so has part: feature:907298-915012:-1:exon
subclass of: SO_0000011

109370953
type: Gene
SIO_000068: ncbigene

position:907298:-1
position: 907298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:915012:-1
position: 915012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:907298-915012:-1:exon

LOC109370953
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9103
nc RNA class: lncRNA
gene: LOC109370953
product: uncharacterized LOC109370953
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XR_004161965.1
SIO_010081: LOC109370953
subclass of: SO_0000673
so part of: LOC109370953
location: complement(join(907298..912408,914029..915012))
location: region:907298-915012:-1
so has part: feature:914029-915012:-1:exon
so has part: feature:907298-912408:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:914029-915012:-1:exon

position:914029:-1
position: 914029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:907298-912408:-1:exon

position:912408:-1
position: 912408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104914266
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914266
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 987026..987981
location: region:987026-987981:1
so has part: feature:987026-987981:1:exon
subclass of: SO_0000010

104914266
type: Gene
SIO_000068: ncbigene

position:987026:1
position: 987026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:987981:1
position: 987981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:987026-987981:1:exon

LOC104914266
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914266
product: oxysterol-binding protein 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 161 samples with support for all annotated introns
transcript id: XM_010723270.3
SIO_010081: LOC104914266
subclass of: SO_0000673
so part of: LOC104914266
location: join(987026..987185,987397..987981)
location: region:987026-987981:1
so has part: feature:987026-987185:1:exon
so has part: feature:987397-987981:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:987026-987185:1:exon

position:987185:1
position: 987185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:987397-987981:1:exon

position:987397:1
position: 987397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC104914266
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914266
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: oxysterol-binding protein 1-like
translation: MNTEVFRLKKWTNYIFWYQNRCFEIKDMWLHYYWDRDDIGIVIRGSMNLHNATARIVNSKTLHLSNHNLTYYLKSDSEKDINDFLHKLQELDVRITNQ
SIO_010081: LOC104914266
subclass of: SO_0000673
so part of: LOC104914266
location: join(987085..987185,987397..987592)
location: region:987085-987592:1
so has part: feature:987085-987185:1:exon
so has part: feature:987397-987592:1:exon

XP_010721572.1
type: Protein
SIO_000068: ncbiprotein

position:987085:1
position: 987085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:987592:1
position: 987592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:987085-987185:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:987397-987592:1:exon

CTPS1
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: CTPS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1024070..1037609)
location: region:1024070-1037609:-1
so has part: feature:1024070-1037609:-1:exon
subclass of: SO_0000010

100542966
type: Gene
SIO_000068: ncbigene

position:1024070:-1
position: 1024070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1037609:-1
position: 1037609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1024070-1037609:-1:exon

CTPS1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: CTPS1
product: CTP synthase 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 221 samples with support for all annotated introns
transcript id: XM_031556786.1
SIO_010081: CTPS1
subclass of: SO_0000673
so part of: CTPS1
location: complement(join(1024070..1024160,1025674..1025818,1026077..1026173,1026258..1026313,1026437..1026533,1027143..1027186,1027758..1027820,1028358..1028452,1028946..1029034,1029780..1029912,1030860..1031011,1031760..1031840,1032166..1032249,1033531..1033647,1034292..1034392,1036474..1036644,1037444..1037609))
location: region:1024070-1037609:-1
so has part: feature:1037444-1037609:-1:exon
so has part: feature:1036474-1036644:-1:exon
so has part: feature:1034292-1034392:-1:exon
so has part: feature:1033531-1033647:-1:exon
so has part: feature:1032166-1032249:-1:exon
so has part: feature:1031760-1031840:-1:exon
so has part: feature:1030860-1031011:-1:exon
so has part: feature:1029780-1029912:-1:exon
so has part: feature:1028946-1029034:-1:exon
so has part: feature:1028358-1028452:-1:exon
so has part: feature:1027758-1027820:-1:exon
so has part: feature:1027143-1027186:-1:exon
so has part: feature:1026437-1026533:-1:exon
so has part: feature:1026258-1026313:-1:exon
so has part: feature:1026077-1026173:-1:exon
so has part: feature:1025674-1025818:-1:exon
so has part: feature:1024070-1024160:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1037444-1037609:-1:exon

position:1037444:-1
position: 1037444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1036474-1036644:-1:exon

position:1036474:-1
position: 1036474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1036644:-1
position: 1036644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1034292-1034392:-1:exon

position:1034292:-1
position: 1034292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1034392:-1
position: 1034392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1033531-1033647:-1:exon

position:1033531:-1
position: 1033531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1033647:-1
position: 1033647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1032166-1032249:-1:exon

position:1032166:-1
position: 1032166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1032249:-1
position: 1032249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1031760-1031840:-1:exon

position:1031760:-1
position: 1031760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1031840:-1
position: 1031840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1030860-1031011:-1:exon

position:1030860:-1
position: 1030860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1031011:-1
position: 1031011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1029780-1029912:-1:exon

position:1029780:-1
position: 1029780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1029912:-1
position: 1029912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1028946-1029034:-1:exon

position:1028946:-1
position: 1028946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1029034:-1
position: 1029034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1028358-1028452:-1:exon

position:1028358:-1
position: 1028358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1028452:-1
position: 1028452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1027758-1027820:-1:exon

position:1027758:-1
position: 1027758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1027820:-1
position: 1027820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1027143-1027186:-1:exon

position:1027143:-1
position: 1027143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1027186:-1
position: 1027186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1026437-1026533:-1:exon

position:1026437:-1
position: 1026437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1026533:-1
position: 1026533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1026258-1026313:-1:exon

position:1026258:-1
position: 1026258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1026313:-1
position: 1026313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1026077-1026173:-1:exon

position:1026077:-1
position: 1026077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1026173:-1
position: 1026173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1025674-1025818:-1:exon

position:1025674:-1
position: 1025674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1025818:-1
position: 1025818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1024070-1024160:-1:exon

position:1024160:-1
position: 1024160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CTPS1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: CTPS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CTP synthase 1
translation: MKYILVTGGVISGIGKGIIASSIGTILKSSGLRVTSIKIDPYINIDAGTFSPYEHGEVFVLDDGGEVDLDLGNYERFLDIRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRQARIPVDEDGVEPQVCVIELGGTVGDIESMPFIEAFRQFQFKARRENFCNIHVSLVPQPSSTGEQKTKPTQNSVRELRGLGLSPDLIVCRCSTPLDTSVKEKISMFCHVEPEQVICVHDVSSIYRVPLLLEEQGVVDYFRRRLDLPIGRQPRRMLMKWKEMADRYDRLLETCSIALVGKYTKFSDSYASVIKALEHSALAINHKLDIKYIDSADLEPATLQEEPVRYHEAWQKLCGAHGVLVPGGFGVRGTEGKIQAISWARKQKKPFLGVCLGMQLAVVEFARNVLGWSDANSTEFDLNTTHPVVIDMPEHNPGQMGGTMRLGKRRTLFQTKNSVMRKLYGDHDFLEERHRHRFEVNPELKKSFEEQGLKFVGQDEEGERMEIVELEEHPFFVGVQYHPEFLSRPIKPSPPYFGLLLASAGRLAHYLQKGCRLSPRDTYSDRSGSSSPDSEITELKFPSFNHD
SIO_010081: CTPS1
subclass of: SO_0000673
so part of: CTPS1
location: complement(join(1024076..1024160,1025674..1025818,1026077..1026173,1026258..1026313,1026437..1026533,1027143..1027186,1027758..1027820,1028358..1028452,1028946..1029034,1029780..1029912,1030860..1031011,1031760..1031840,1032166..1032249,1033531..1033647,1034292..1034392,1036474..1036644,1037444..1037609))
location: region:1024076-1037609:-1
so has part: feature:1037444-1037609:-1:exon
so has part: feature:1036474-1036644:-1:exon
so has part: feature:1034292-1034392:-1:exon
so has part: feature:1033531-1033647:-1:exon
so has part: feature:1032166-1032249:-1:exon
so has part: feature:1031760-1031840:-1:exon
so has part: feature:1030860-1031011:-1:exon
so has part: feature:1029780-1029912:-1:exon
so has part: feature:1028946-1029034:-1:exon
so has part: feature:1028358-1028452:-1:exon
so has part: feature:1027758-1027820:-1:exon
so has part: feature:1027143-1027186:-1:exon
so has part: feature:1026437-1026533:-1:exon
so has part: feature:1026258-1026313:-1:exon
so has part: feature:1026077-1026173:-1:exon
so has part: feature:1025674-1025818:-1:exon
so has part: feature:1024076-1024160:-1:exon

XP_031412646.1
type: Protein
SIO_000068: ncbiprotein

position:1024076:-1
position: 1024076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1037444-1037609:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1036474-1036644:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1034292-1034392:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1033531-1033647:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1032166-1032249:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1031760-1031840:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1030860-1031011:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1029780-1029912:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1028946-1029034:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1028358-1028452:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1027758-1027820:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1027143-1027186:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1026437-1026533:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1026258-1026313:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1026077-1026173:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1025674-1025818:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1024076-1024160:-1:exon

SCMH1
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: SCMH1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1039206..1059359
location: region:1039206-1059359:1
so has part: feature:1039206-1059359:1:exon
subclass of: SO_0000010

100542812
type: Gene
SIO_000068: ncbigene

position:1039206:1
position: 1039206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1059359:1
position: 1059359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1039206-1059359:1:exon

SCMH1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: SCMH1
product: Scm polycomb group protein homolog 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 167 samples with support for all annotated introns
transcript id: XM_010723273.3
SIO_010081: SCMH1
subclass of: SO_0000673
so part of: SCMH1
location: join(1039206..1042848,1043893..1043961,1044659..1044729,1045006..1045240,1047592..1047680,1047982..1048225,1051979..1052211,1052658..1052784,1053643..1053843,1054355..1054540,1057576..1057779,1058027..1058160,1058488..1059359)
location: region:1039206-1059359:1
so has part: feature:1039206-1042848:1:exon
so has part: feature:1043893-1043961:1:exon
so has part: feature:1044659-1044729:1:exon
so has part: feature:1045006-1045240:1:exon
so has part: feature:1047592-1047680:1:exon
so has part: feature:1047982-1048225:1:exon
so has part: feature:1051979-1052211:1:exon
so has part: feature:1052658-1052784:1:exon
so has part: feature:1053643-1053843:1:exon
so has part: feature:1054355-1054540:1:exon
so has part: feature:1057576-1057779:1:exon
so has part: feature:1058027-1058160:1:exon
so has part: feature:1058488-1059359:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1039206-1042848:1:exon

position:1042848:1
position: 1042848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1043893-1043961:1:exon

position:1043893:1
position: 1043893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1043961:1
position: 1043961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1044659-1044729:1:exon

position:1044659:1
position: 1044659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1044729:1
position: 1044729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1045006-1045240:1:exon

position:1045006:1
position: 1045006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1045240:1
position: 1045240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1047592-1047680:1:exon

position:1047592:1
position: 1047592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1047680:1
position: 1047680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1047982-1048225:1:exon

position:1047982:1
position: 1047982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1048225:1
position: 1048225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1051979-1052211:1:exon

position:1051979:1
position: 1051979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1052211:1
position: 1052211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1052658-1052784:1:exon

position:1052658:1
position: 1052658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1052784:1
position: 1052784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1053643-1053843:1:exon

position:1053643:1
position: 1053643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1053843:1
position: 1053843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1054355-1054540:1:exon

position:1054355:1
position: 1054355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1054540:1
position: 1054540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1057576-1057779:1:exon

position:1057576:1
position: 1057576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1057779:1
position: 1057779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1058027-1058160:1:exon

position:1058027:1
position: 1058027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1058160:1
position: 1058160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1058488-1059359:1:exon

position:1058488:1
position: 1058488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SCMH1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: SCMH1
product: Scm polycomb group protein homolog 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 196 samples with support for all annotated introns
transcript id: XM_010723272.3
SIO_010081: SCMH1
subclass of: SO_0000673
so part of: SCMH1
location: join(1039220..1042848,1043893..1043961,1044659..1044729,1045006..1045240,1047592..1047680,1047982..1048225,1051979..1052211,1052658..1052784,1053643..1053843,1054355..1054540,1056167..1056298,1057576..1057779,1058027..1058160,1058488..1059359)
location: region:1039220-1059359:1
so has part: feature:1039220-1042848:1:exon
so has part: feature:1043893-1043961:1:exon
so has part: feature:1044659-1044729:1:exon
so has part: feature:1045006-1045240:1:exon
so has part: feature:1047592-1047680:1:exon
so has part: feature:1047982-1048225:1:exon
so has part: feature:1051979-1052211:1:exon
so has part: feature:1052658-1052784:1:exon
so has part: feature:1053643-1053843:1:exon
so has part: feature:1054355-1054540:1:exon
so has part: feature:1056167-1056298:1:exon
so has part: feature:1057576-1057779:1:exon
so has part: feature:1058027-1058160:1:exon
so has part: feature:1058488-1059359:1:exon

position:1039220:1
position: 1039220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1039220-1042848:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1043893-1043961:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1044659-1044729:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1045006-1045240:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1047592-1047680:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1047982-1048225:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1051979-1052211:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1052658-1052784:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1053643-1053843:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1054355-1054540:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1056167-1056298:1:exon

position:1056167:1
position: 1056167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1056298:1
position: 1056298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1057576-1057779:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1058027-1058160:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1058488-1059359:1:exon

SCMH1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: SCMH1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: polycomb protein SCMH1 isoform X1
translation: MALSFVLGVFSYVKASRSHNKDGSGDRMRKPGPQKAIDWKDGKKHKYGRPPESPSQYQGHFTWEKYLKETCVVPAPAHCFKQSYTPPANEFKINMKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSAEIQPIGNCEKNGGMLQPPLGFRLNASSWPMFLLKTLNGAEMAPIRIFHKEPPSPSQNFFKTGMKLEAVDRKNPHFICPATIGEVRGSEVLITFDGWRGAFDYWCRYDSRDIFPVGWCSLTGDNLQPPGTKVVIPKSPLPASEVNSEKPSMHSSTKTVLGHQQGQGRRKAGKKRGRTTKALIHQPMPAPSKSVEPLKFPRKRGPKPGSKRKPRTLLSPAPTSPTTSTPEPDTSTVPQDAATVPSSAMQAPTVCIYLNKNGSAGPHLDKKKIQRLPDHFGPARASVVLQQAVQACIDCAYHQKTVFSFLKQGHGGEVISAVFDREQHTLNLPAVNSITYVLRFLEKLCHNLRSDNLFGNQPFSQHSHAPRSHEYDHDRYLPDRSSSLDGTLQGPGRGTKRYCQDSPPYSAPLSPKLPKNDRHPLEGETFVLGDGPPGPLEPRMDPMDSALNAVNASGHSRSSREFRLQGYRHLHQPCSLSQGSTSTLGRLGSTGSERYRDGTRLSSRDPSCWTVEEVMQFIREADPQLGPHADLFRKHEIDGKALLLLRSDMMMKYMGLKLGPALKLTYHIDKLKQGKF
SIO_010081: SCMH1
subclass of: SO_0000673
so part of: SCMH1
location: join(1042743..1042848,1043893..1043961,1044659..1044729,1045006..1045240,1047592..1047680,1047982..1048225,1051979..1052211,1052658..1052784,1053643..1053843,1054355..1054540,1056167..1056298,1057576..1057779,1058027..1058160,1058488..1058613)
location: region:1042743-1058613:1
so has part: feature:1042743-1042848:1:exon
so has part: feature:1043893-1043961:1:exon
so has part: feature:1044659-1044729:1:exon
so has part: feature:1045006-1045240:1:exon
so has part: feature:1047592-1047680:1:exon
so has part: feature:1047982-1048225:1:exon
so has part: feature:1051979-1052211:1:exon
so has part: feature:1052658-1052784:1:exon
so has part: feature:1053643-1053843:1:exon
so has part: feature:1054355-1054540:1:exon
so has part: feature:1056167-1056298:1:exon
so has part: feature:1057576-1057779:1:exon
so has part: feature:1058027-1058160:1:exon
so has part: feature:1058488-1058613:1:exon

XP_010721574.1
type: Protein
SIO_000068: ncbiprotein

position:1042743:1
position: 1042743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1058613:1
position: 1058613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1042743-1042848:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1043893-1043961:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1044659-1044729:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1045006-1045240:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1047592-1047680:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1047982-1048225:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1051979-1052211:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1052658-1052784:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1053643-1053843:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1054355-1054540:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1056167-1056298:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1057576-1057779:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1058027-1058160:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1058488-1058613:1:exon

SCMH1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: SCMH1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: polycomb protein SCMH1 isoform X2
translation: MALSFVLGVFSYVKASRSHNKDGSGDRMRKPGPQKAIDWKDGKKHKYGRPPESPSQYQGHFTWEKYLKETCVVPAPAHCFKQSYTPPANEFKINMKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSAEIQPIGNCEKNGGMLQPPLGFRLNASSWPMFLLKTLNGAEMAPIRIFHKEPPSPSQNFFKTGMKLEAVDRKNPHFICPATIGEVRGSEVLITFDGWRGAFDYWCRYDSRDIFPVGWCSLTGDNLQPPGTKVVIPKSPLPASEVNSEKPSMHSSTKTVLGHQQGQGRRKAGKKRGRTTKALIHQPMPAPSKSVEPLKFPRKRGPKPGSKRKPRTLLSPAPTSPTTSTPEPDTSTVPQDAATVPSSAMQAPTVCIYLNKNGSAGPHLDKKKIQRLPDHFGPARASVVLQQAVQACIDCAYHQKTVFSFLKQGHGGEVISAVFDREQHTLNLPAVNSITYVLRFLEKLCHNLRSDNLFGNQPFSQHSHAPRSHEYDHDRYLPGETFVLGDGPPGPLEPRMDPMDSALNAVNASGHSRSSREFRLQGYRHLHQPCSLSQGSTSTLGRLGSTGSERYRDGTRLSSRDPSCWTVEEVMQFIREADPQLGPHADLFRKHEIDGKALLLLRSDMMMKYMGLKLGPALKLTYHIDKLKQGKF
SIO_010081: SCMH1
subclass of: SO_0000673
so part of: SCMH1
location: join(1042743..1042848,1043893..1043961,1044659..1044729,1045006..1045240,1047592..1047680,1047982..1048225,1051979..1052211,1052658..1052784,1053643..1053843,1054355..1054540,1057576..1057779,1058027..1058160,1058488..1058613)
location: region:1042743-1058613:1
so has part: feature:1042743-1042848:1:exon
so has part: feature:1043893-1043961:1:exon
so has part: feature:1044659-1044729:1:exon
so has part: feature:1045006-1045240:1:exon
so has part: feature:1047592-1047680:1:exon
so has part: feature:1047982-1048225:1:exon
so has part: feature:1051979-1052211:1:exon
so has part: feature:1052658-1052784:1:exon
so has part: feature:1053643-1053843:1:exon
so has part: feature:1054355-1054540:1:exon
so has part: feature:1057576-1057779:1:exon
so has part: feature:1058027-1058160:1:exon
so has part: feature:1058488-1058613:1:exon

XP_010721575.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1042743-1042848:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1043893-1043961:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1044659-1044729:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1045006-1045240:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1047592-1047680:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1047982-1048225:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1051979-1052211:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1052658-1052784:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1053643-1053843:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1054355-1054540:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1057576-1057779:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1058027-1058160:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1058488-1058613:1:exon

LOC104914279
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914279
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1090236..>1093178)
location: region:1090236-1093178:-1
so has part: feature:1090236-1093178:-1:exon
subclass of: SO_0000010

104914279
type: Gene
SIO_000068: ncbigene

position:1090236:-1
position: 1090236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1093178:-1
position: 1093178
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1090236-1093178:-1:exon

LOC104914279
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9103
gene: LOC104914279
product: forkhead box protein O3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_010723300.2
SIO_010081: LOC104914279
subclass of: SO_0000673
so part of: LOC104914279
location: complement(1090236..>1093178)
location: region:1090236-1093178:-1
so has part: feature:1090236-1093178:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1090236-1093178:-1:exon

LOC104914279
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9103
gene: LOC104914279
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: forkhead box protein O3
translation: RPLCLFSPQNSIRHNLSLHTRFIRVQNEGTGKSSWWMLNPEGGKTGKTPRRRAVSMDNNSKFLRIKGKASKKKQLQVTPERGDDSPSSQQAKWSESPASHASDEYDAWADFRTRASSSASTLSGRLSPIMANREPDELEEDDGTPSSPLMYPSPSSTVSPSLSARCSVELPRLTDLTGTISLGESLGESLLEDLQDGYSMSPSQPLPLRQRSSSFSFNSKCSSMGPAANTYCGTIYSQPALGLMRRLPMQTIQENKQATFSPAASYRNASSLQDLLSSISYAHKESMVPGDLPPPPPGPAVPSRGHRQSPLLCGEQGMAYPAHPAPLLKGSALYHPPSAGHHPALNASALANPVSLMSLPGDACGATAMPHHGHLHPYAANQGAHMSLLDSPYAGAVHPPVLGQDRFPADLDLDMFNGSLECDVESIILNDFMDSDEMDFNFDSALPPQNALNVPTLPGGPQPTNQSWVPG
SIO_010081: LOC104914279
subclass of: SO_0000673
so part of: LOC104914279
location: complement(1091763..>1093178)
location: region:1091763-1093178:-1
so has part: feature:1091763-1093178:-1:exon

XP_010721602.2
type: Protein
SIO_000068: ncbiprotein

position:1091763:-1
position: 1091763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1091763-1093178:-1:exon

LOC104914268
type: Gene
subclass of: SO_0000704
RO_0002162: 9103
gene: LOC104914268
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1308783..1317082)
location: region:1308783-1317082:-1
so has part: feature:1308783-1317082:-1:exon
subclass of: SO_0000011

104914268
type: Gene
SIO_000068: ncbigene