Guinea pig Chlamydia phage, complete genome.
type: Entry
definition: Guinea pig Chlamydia phage, complete genome.
sequence version: NC_001998.1
sequence date: 2018-08-13
sequence: sequence
division: PHG
label: NC_001998.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA485481
keyword: RefSeq
source: Guinea pig Chlamydia phage
organism: Guinea pig Chlamydia phage
taxonomy: Viruses; ssDNA viruses; Microviridae; Gokushovirinae; Chlamydiamicrovirus.
reference: 1
reference: 2
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from U41758.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000353
sequence length: 4529
topology: circular
so has quality: SO_0000988
location: 1..4529
location: region:1-4529:1
RO_0002162: 90963

NC_001998
type: RefSeq
SIO_000068: refseq

PRJNA485481
type: BioProject
SIO_000068: bioproject

1
title: Direct Submission
journal: Submitted (30-NOV-2001) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

2
title: Direct Submission
author: Hsia, R.-c.
author: Bavoil, P.M.
journal: Submitted (01-DEC-1995) Ru-ching Hsia, Microbiology & Immunology, University of Rochester, 601 Elmwood Avenue, Box 672, Rochester, NY 14642, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4529:1
position: 4529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4529:1:source
so part of: sequence
organism: Guinea pig Chlamydia phage
mol type: genomic DNA
strain: PhiCPG1
host: Chlamydia psittaci
note: infects Chlamydia psittaci; strain Guinea Pig Inclusion Conjunctivitis; single-stranded circular DNA phage; the sequence submitted represents the complete genome of PhiCPG1

90963
type: Taxonomy
SIO_000068: taxonomy

PhiCPG1p1
type: Gene
subclass of: SO_0000704
RO_0002162: 90963
locus tag: PhiCPG1p1
so part of: sequence
location: join(4423..4529,1..148)
location: region:1-4529:1
so has part: feature:4423-4529:1:exon
so has part: feature:1-148:1:exon
subclass of: SO_0000010

1261937
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:4423-4529:1:exon

position:4423:1
position: 4423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-148:1:exon

position:148:1
position: 148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PhiCPG1p1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 90963
locus tag: PhiCPG1p1
codon start: 1
product: nonstructural protein
translation: MKVFTVFDIKTEIYQQPFFMQATGAAIRAFSDMVNEDPSKNQFAAHPEDYILYEIGSYDDSTGNFIPLDVPKALGTGLDFKHKQ
SIO_010081: PhiCPG1p1
subclass of: SO_0000673
so part of: PhiCPG1p1
location: join(4423..4529,1..148)
location: region:1-4529:1
so has part: feature:4423-4529:1:exon
so has part: feature:1-148:1:exon

NP_510871.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4423-4529:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-148:1:exon

PhiCPG1p2
type: Gene
subclass of: SO_0000704
RO_0002162: 90963
locus tag: PhiCPG1p2
so part of: sequence
location: 156..1817
location: region:156-1817:1
so has part: feature:156-1817:1:exon
subclass of: SO_0000010

1261929
type: Gene
SIO_000068: ncbigene

position:156:1
position: 156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1817:1
position: 1817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:156-1817:1:exon

PhiCPG1p2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 90963
locus tag: PhiCPG1p2
codon start: 1
product: hypothetical protein
translation: MVRNRRLPSVMSHSFAQVPSARIQRSSFDRSCGLKTTFDAGYLIPIFCDEVLPGDTFSLKEAFLARMATPIFPLMDNLRLDTQYFFVPLRLLWSNFQKFCGEQDNPGDSTDFLTPVLTAPSGGFIEGSIHDYLGLPTKVAGIECVAFWHRAYNLIWNQYYRDENIQESVDVEMGDTTSNEVNNYKLLKRGKRYDYFTSCLPWPQKGPAVTIGVGGIVPVQGLGIQWGNSSAPNPITASSWINSVNPTFINSTTPTPTGTNKILNYGQAYYIKKPGEATTDPTPRAYVDLGSTSPVTINSLREAFQLQKLYERDARGGTRYIEIIRSHFNVQSPDARLQRAEYLGGSSTPVNISPIPQTSSTDSTSPQGNLAAYGTAIGSKRVFTKSFTEHGVILGLASVRADLNYQQGLDRMWSRRTRWDFYWPALSHLGEQAVLNKEIYCQGPAVKDAQNGNVVVDEQVFGYQERFAEYRYKTSKITGKFRSNATGSLDAWHLAQQFENLPTLSPEFIEENPPMDRVVAVDTEPDFLLDGWFSLRCARPMPVYSVPGLIDHF
SIO_010081: PhiCPG1p2
subclass of: SO_0000673
so part of: PhiCPG1p2
location: 156..1817
location: region:156-1817:1
so has part: feature:156-1817:1:exon

NP_510872.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:156-1817:1:exon

PhiCPG1p3
type: Gene
subclass of: SO_0000704
RO_0002162: 90963
locus tag: PhiCPG1p3
so part of: sequence
location: 1910..2068
location: region:1910-2068:1
so has part: feature:1910-2068:1:exon
subclass of: SO_0000010

1261935
type: Gene
SIO_000068: ncbigene

position:1910:1
position: 1910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2068:1
position: 2068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1910-2068:1:exon

PhiCPG1p3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 90963
locus tag: PhiCPG1p3
codon start: 1
product: nonstructural protein
translation: MWRIYESRTTYEHSRFSSFWSCSRIILSPWNSFRSFRISWRTETKCDCEANC
SIO_010081: PhiCPG1p3
subclass of: SO_0000673
so part of: PhiCPG1p3
location: 1910..2068
location: region:1910-2068:1
so has part: feature:1910-2068:1:exon

NP_510873.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1910-2068:1:exon

PhiCPG1p4
type: Gene
subclass of: SO_0000704
RO_0002162: 90963
locus tag: PhiCPG1p4
so part of: sequence
location: 1923..2483
location: region:1923-2483:1
so has part: feature:1923-2483:1:exon
subclass of: SO_0000010

1261930
type: Gene
SIO_000068: ncbigene

position:1923:1
position: 1923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2483:1
position: 2483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1923-2483:1:exon

PhiCPG1p4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 90963
locus tag: PhiCPG1p4
codon start: 1
product: capsid protein VP2-related protein
translation: MNPEQLTNTLGSAVSGVAQGLSFLPGIASGVLGYLGAQKQNATAKQIAREQMAFQERMSNTAYQRAMEDMKKAGLNPMLAFSKGGASSPAGASWSPNNPVESAMNSGLAVQRLTYERKKMQAELQNLREQNRLIRNQAIREGYLAERDKYMRVAGVPVATEMLDRTSGLLSSSAKAFKNLFSRKGR
SIO_010081: PhiCPG1p4
subclass of: SO_0000673
so part of: PhiCPG1p4
location: 1923..2483
location: region:1923-2483:1
so has part: feature:1923-2483:1:exon

NP_510874.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1923-2483:1:exon

PhiCPG1p5
type: Gene
subclass of: SO_0000704
RO_0002162: 90963
locus tag: PhiCPG1p5
so part of: sequence
location: 2484..2930
location: region:2484-2930:1
so has part: feature:2484-2930:1:exon
subclass of: SO_0000010

1261931
type: Gene
SIO_000068: ncbigene

position:2484:1
position: 2484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2930:1
position: 2930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2484-2930:1:exon

PhiCPG1p5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 90963
locus tag: PhiCPG1p5
codon start: 1
product: capsid protein VP3
translation: MFKSAYSEKKSVKMKFTQKSLTQQHNKDECDINNIVAKLNATGVLEHVERRSPRYMDCMDPMEYSEALNVVIEAQEQFDSLPAKVRERFGNDPEAMLDFLSREENYEEAKALGFVYEDGTSGAPHTFCEADPKDDQNVANQEPGLAQK
SIO_010081: PhiCPG1p5
subclass of: SO_0000673
so part of: PhiCPG1p5
location: 2484..2930
location: region:2484-2930:1
so has part: feature:2484-2930:1:exon

NP_510875.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2484-2930:1:exon

PhiCPG1p6
type: Gene
subclass of: SO_0000704
RO_0002162: 90963
locus tag: PhiCPG1p6
so part of: sequence
location: 2938..3045
location: region:2938-3045:1
so has part: feature:2938-3045:1:exon
subclass of: SO_0000010

1261934
type: Gene
SIO_000068: ncbigene

position:2938:1
position: 2938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3045:1
position: 3045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2938-3045:1:exon

PhiCPG1p6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 90963
locus tag: PhiCPG1p6
codon start: 1
product: hypothetical protein
translation: MCKKVCKKCPKKGPKNAPKIGAFYERKTTSVIQST
SIO_010081: PhiCPG1p6
subclass of: SO_0000673
so part of: PhiCPG1p6
location: 2938..3045
location: region:2938-3045:1
so has part: feature:2938-3045:1:exon

NP_510876.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2938-3045:1:exon

PhiCPG1p7
type: Gene
subclass of: SO_0000704
RO_0002162: 90963
locus tag: PhiCPG1p7
so part of: sequence
location: complement(3103..3204)
location: region:3103-3204:-1
so has part: feature:3103-3204:-1:exon
subclass of: SO_0000010

1261932
type: Gene
SIO_000068: ncbigene

position:3103:-1
position: 3103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3204:-1
position: 3204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3103-3204:-1:exon

PhiCPG1p7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 90963
locus tag: PhiCPG1p7
codon start: 1
product: hypothetical protein
translation: MQFLKKVFDFYVAEVCIFFVPFFNLILSLNFGP
SIO_010081: PhiCPG1p7
subclass of: SO_0000673
so part of: PhiCPG1p7
location: complement(3103..3204)
location: region:3103-3204:-1
so has part: feature:3103-3204:-1:exon

NP_510877.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3103-3204:-1:exon

PhiCPG1p8
type: Gene
subclass of: SO_0000704
RO_0002162: 90963
locus tag: PhiCPG1p8
so part of: sequence
location: 3141..3263
location: region:3141-3263:1
so has part: feature:3141-3263:1:exon
subclass of: SO_0000010

1261936
type: Gene
SIO_000068: ncbigene

position:3141:1
position: 3141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3263:1
position: 3263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3141-3263:1:exon

PhiCPG1p8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 90963
locus tag: PhiCPG1p8
codon start: 1
product: nonstructural protein
translation: MARRRYRLPRRRSRRLFSRTALRMHPRNRLRRIMRGGIRF
SIO_010081: PhiCPG1p8
subclass of: SO_0000673
so part of: PhiCPG1p8
location: 3141..3263
location: region:3141-3263:1
so has part: feature:3141-3263:1:exon

NP_510878.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3141-3263:1:exon

PhiCPG1p9
type: Gene
subclass of: SO_0000704
RO_0002162: 90963
locus tag: PhiCPG1p9
so part of: sequence
location: 3602..4393
location: region:3602-4393:1
so has part: feature:3602-4393:1:exon
subclass of: SO_0000010

1261933
type: Gene
SIO_000068: ncbigene

position:3602:1
position: 3602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4393:1
position: 4393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3602-4393:1:exon

PhiCPG1p9
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 90963
locus tag: PhiCPG1p9
codon start: 1
product: hypothetical protein
translation: MPWRKCKFCRVQNAKIWSYRCIHEASLYSQNCFLTLTYEDRHLPENGSLVRDHPALFLMRLRKEIYPHKIRYFGCGEYGSKLQRPHYHLLIYNYDFPDKKLLSKKRGNPLFVSEKLMRLWPFGFSTVGSVMRQSAGYVARYSLKKVNGDISQDHYGQRLPQFLMCSLKPGIGADWYEKYKRDVYPQDYLVVQDKGKSFTTRPPRYYDKLHSRFDPEEMDEVKQKRIEKVMALPQLTQDKAEVKQYIFNDRTKRLFRDYEEESY
SIO_010081: PhiCPG1p9
subclass of: SO_0000673
so part of: PhiCPG1p9
location: 3602..4393
location: region:3602-4393:1
so has part: feature:3602-4393:1:exon

NP_510879.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3602-4393:1:exon