Gallus gallus isolate bGalGal1 chromosome 39, bGalGal1.mat.broiler.GRCg7b, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM028520.1.\nAssembly name: bGalGal1.mat.broiler.GRCg7b\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/01/19. The original whole-genome shotgun project has the\naccession JAENSK000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 22-JUL-2020\nAssembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0;\n Scaff 10x v. 4.1.0; Bionano solve v.\n 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow\n polishing and gap filling v.\n SMRTLink7.0.1; Freebayes v. 1.3.1; gEVAL\n manual curation v. 2020-07-22; VGP trio\n assembly pipeline v. 1.6\nAssembly Name :: bGalGal1.mat.broiler.GRCg7b\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 102.01x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Gallus gallus Annotation Release 106\nAnnotation Version :: 106\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
leucine-rich repeat extensin-like protein 3
COORDINATES: polyA evidence [ECO:0006239]
FERM domain containing 8, transcript variant X1
COORDINATES: cap analysis [ECO:0007248] and polyA evidence [ECO:0006239]
FERM domain containing 8, transcript variant X2
FERM domain containing 8, transcript variant X4
FERM domain containing 8, transcript variant X3
FERM domain-containing protein 8 isoform X1
FERM domain-containing protein 8 isoform X3
FERM domain-containing protein 8 isoform X2
NADH-ubiquinone oxidoreductase chain 1 isoform X1
SCY1 like pseudokinase 1, transcript variant X2
SCY1 like pseudokinase 1, transcript variant X1
SCY1 like pseudokinase 1, transcript variant X3
N-terminal kinase-like protein isoform X1
N-terminal kinase-like protein isoform X2
tRNA phosphotransferase 1, transcript variant X1
tRNA phosphotransferase 1, transcript variant X2
fermitin family homolog 3-like, transcript variant X1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: fermitin family homolog 3 isoform X1
stress induced phosphoprotein 1, transcript variant X1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: stress-induced-phosphoprotein 1 isoform X1
fibronectin leucine rich transmembrane protein 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 5 Proteins, and 70% coverage of the annotated genomic feature by RNAseq alignments
leucine-rich repeat transmembrane protein FLRT1
OTU deubiquitinase, ubiquitin aldehyde binding 1
cytochrome c oxidase subunit 8A, transcript variant X1
uncharacterized protein COX8A isoform X1
N(alpha)-acetyltransferase 40, NatD catalytic subunit, transcript variant X2
N(alpha)-acetyltransferase 40, NatD catalytic subunit, transcript variant X1
N(alpha)-acetyltransferase 40, NatD catalytic subunit, transcript variant X3
signal-induced proliferation-associated 1, transcript variant X1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 2 bases in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: signal-induced proliferation-associated protein 1 isoform X1
EH domain binding protein 1 like 1, transcript variant X6
EH domain binding protein 1 like 1, transcript variant X5
EH domain binding protein 1 like 1, transcript variant X4
EH domain binding protein 1 like 1, transcript variant X3
EH domain binding protein 1 like 1, transcript variant X1
EH domain binding protein 1 like 1, transcript variant X2
EH domain-binding protein 1-like protein 1 isoform X6
EH domain-binding protein 1-like protein 1 isoform X5
EH domain-binding protein 1-like protein 1 isoform X4
EH domain-binding protein 1-like protein 1 isoform X3
EH domain-binding protein 1-like protein 1 isoform X1
EH domain-binding protein 1-like protein 1 isoform X2
Sjogren syndrome/scleroderma autoantigen 1
RNA binding motif protein 4B, transcript variant X2
RNA binding motif protein 4B, transcript variant X3
RNA binding motif protein 4B, transcript variant X1
uncharacterized LOC101751955, transcript variant X1
uncharacterized LOC101751955, transcript variant X2
uncharacterized protein LOC101751955 isoform X1
uncharacterized protein LOC101751955 isoform X2
RNA-binding protein 4B, transcript variant X4
copper chaperone for superoxide dismutase
RNA binding motif protein 14, transcript variant X3
RNA binding motif protein 14, transcript variant X1
RNA binding motif protein 14, transcript variant X2
RNA-binding protein 4B, transcript variant X6
RNA-binding protein 4B, transcript variant X5
RNA-binding protein 4B, transcript variant X2
RNA-binding protein 4B, transcript variant X1
RNA-binding protein 4B, transcript variant X3
spectrin beta, non-erythrocytic 2, transcript variant X1
LOW QUALITY PROTEIN: spectrin beta chain, non-erythrocytic 2 isoform X1