Gallus gallus isolate bGalGal1 chromosome 37, bGalGal1.mat.broiler.GRCg7b, whole genome shotgun sequence.
type: Entry
definition: Gallus gallus isolate bGalGal1 chromosome 37, bGalGal1.mat.broiler.GRCg7b, whole genome shotgun sequence.
sequence version: NC_052568.1
sequence date: 2022-03-01
sequence: sequence
division: CON
label: NC_052568.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA698609
dblink: SAMN15960293
keyword: WGS
keyword: RefSeq
source: Gallus gallus (chicken)
organism: Gallus gallus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM028518.1.\nAssembly name: bGalGal1.mat.broiler.GRCg7b\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/01/19. The original whole-genome shotgun project has the\naccession JAENSK000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 22-JUL-2020\nAssembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0;\n Scaff 10x v. 4.1.0; Bionano solve v.\n 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow\n polishing and gap filling v.\n SMRTLink7.0.1; Freebayes v. 1.3.1; gEVAL\n manual curation v. 2020-07-22; VGP trio\n assembly pipeline v. 1.6\nAssembly Name :: bGalGal1.mat.broiler.GRCg7b\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 102.01x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Gallus gallus Annotation Release 106\nAnnotation Version :: 106\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 157853
topology: linear
so has quality: SO_0000987
location: 1..157853
location: region:1-157853:1
RO_0002162: 9031

NC_052568
type: RefSeq
SIO_000068: refseq

PRJNA698609
type: BioProject
SIO_000068: bioproject

SAMN15960293
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:157853:1
position: 157853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-157853:1:source
so part of: sequence
organism: Gallus gallus
mol type: genomic DNA
isolate: bGalGal1
chromosome: 37
sex: female
tissue type: blood
country: USA: Fayetteville
lat lon: 36.0822 N 94.1719 W
collection date: 20-May-2019
collected by: Nick Anthony

9031
type: Taxonomy
SIO_000068: taxonomy

LOC121108161
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC121108161
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3..987)
location: region:3-987:-1
so has part: feature:3-987:-1:exon
subclass of: SO_0000011

121108161
type: Gene
SIO_000068: ncbigene

position:3:-1
position: 3
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:987:-1
position: 987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3-987:-1:exon

LOC121108161
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9031
nc RNA class: lncRNA
gene: LOC121108161
product: uncharacterized LOC121108161, transcript variant X1
experiment: COORDINATES: cap analysis [ECO:0007248]
transcript id: XR_005842457.2
SIO_010081: LOC121108161
subclass of: SO_0000673
so part of: LOC121108161
location: complement(join(3..57,280..525,635..987))
location: region:3-987:-1
so has part: feature:635-987:-1:exon
so has part: feature:280-525:-1:exon
so has part: feature:3-57:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:635-987:-1:exon

position:635:-1
position: 635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:280-525:-1:exon

position:280:-1
position: 280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:525:-1
position: 525
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3-57:-1:exon

position:57:-1
position: 57
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121108172
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC121108172
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2598..5531)
location: region:2598-5531:-1
so has part: feature:2598-5531:-1:exon
subclass of: SO_0000010

121108172
type: Gene
SIO_000068: ncbigene

position:2598:-1
position: 2598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5531:-1
position: 5531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2598-5531:-1:exon

LOC121108172
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9031
gene: LOC121108172
product: uncharacterized LOC121108172
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_040655083.1
SIO_010081: LOC121108172
subclass of: SO_0000673
so part of: LOC121108172
location: complement(join(2598..4374,4682..4817,5444..5531))
location: region:2598-5531:-1
so has part: feature:5444-5531:-1:exon
so has part: feature:4682-4817:-1:exon
so has part: feature:2598-4374:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5444-5531:-1:exon

position:5444:-1
position: 5444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4682-4817:-1:exon

position:4682:-1
position: 4682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4817:-1
position: 4817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2598-4374:-1:exon

position:4374:-1
position: 4374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121108172
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9031
gene: LOC121108172
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC121108172
translation: MKMGLSAGNQREQQGLVERCVPPLTVVSSLSSAFPIPVRFAGKPTFIKRLSSDSLDGGKLRRIRSLLRKESSTSSLLPAIPGVPEDQKQPLTCQLQGQAETDSQEDLGQAPGIKHVSFREEEREAEKAHRVAAVLKLPKANESFSNDSRPSSRAQSSPSQASQGTPSRLPLLACDSVRLLRRRAKKSRQKEPEEMEASTSQAEASQPQESSADRAGFLPPINEETQSPQRQPPNSKAPPRRKGTHYPR
SIO_010081: LOC121108172
subclass of: SO_0000673
so part of: LOC121108172
location: complement(join(3852..4374,4682..4817,5444..5531))
location: region:3852-5531:-1
so has part: feature:5444-5531:-1:exon
so has part: feature:4682-4817:-1:exon
so has part: feature:3852-4374:-1:exon

XP_040511017.1
type: Protein
SIO_000068: ncbiprotein

position:3852:-1
position: 3852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5444-5531:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4682-4817:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3852-4374:-1:exon

LOC121108158
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC121108158
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 13094..15420
location: region:13094-15420:1
so has part: feature:13094-15420:1:exon
subclass of: SO_0000010

121108158
type: Gene
SIO_000068: ncbigene

position:13094:1
position: 13094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15420:1
position: 15420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13094-15420:1:exon

LOC121108158
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9031
gene: LOC121108158
product: uncharacterized LOC121108158, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_040655072.1
SIO_010081: LOC121108158
subclass of: SO_0000673
so part of: LOC121108158
location: join(13094..13377,13664..13787,14065..14127,14381..14695,15032..15108,15242..15420)
location: region:13094-15420:1
so has part: feature:13094-13377:1:exon
so has part: feature:13664-13787:1:exon
so has part: feature:14065-14127:1:exon
so has part: feature:14381-14695:1:exon
so has part: feature:15032-15108:1:exon
so has part: feature:15242-15420:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13094-13377:1:exon

position:13377:1
position: 13377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:13664-13787:1:exon

position:13664:1
position: 13664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13787:1
position: 13787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:14065-14127:1:exon

position:14065:1
position: 14065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14127:1
position: 14127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:14381-14695:1:exon

position:14381:1
position: 14381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14695:1
position: 14695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:15032-15108:1:exon

position:15032:1
position: 15032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15108:1
position: 15108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:15242-15420:1:exon

position:15242:1
position: 15242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121108158
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9031
gene: LOC121108158
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC121108158 isoform X1
translation: MSQQGDDRGSNCCRVSGKKWRGAVPRGWEQQPAGCQRSNRALQRTEGRNRDGRSFLPYRRMDPARPWSGAGQGGKRKASAERGAEPNGKIYAKAVQEVLLERAHLQAGGLPTTAGPNTGGRPSPAVCPRSVSKSLAGCKRKGLEEAKPTAAQLPANKRVRGPSGDSVPAPAAHPGPAAARSSKLRARRRQEKERRGESMKAALRAAAARAEASAVNSLVEMMQKLQLKD
SIO_010081: LOC121108158
subclass of: SO_0000673
so part of: LOC121108158
location: join(13324..13377,13664..13787,14065..14127,14381..14695,15032..15108,15242..15298)
location: region:13324-15298:1
so has part: feature:13324-13377:1:exon
so has part: feature:13664-13787:1:exon
so has part: feature:14065-14127:1:exon
so has part: feature:14381-14695:1:exon
so has part: feature:15032-15108:1:exon
so has part: feature:15242-15298:1:exon

XP_040511006.1
type: Protein
SIO_000068: ncbiprotein

position:13324:1
position: 13324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15298:1
position: 15298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13324-13377:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:13664-13787:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14065-14127:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14381-14695:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:15032-15108:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:15242-15298:1:exon

LOC101751245
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC101751245
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(14993..19704)
location: region:14993-19704:-1
so has part: feature:14993-19704:-1:exon
subclass of: SO_0000011

101751245
type: Gene
SIO_000068: ncbigene

position:14993:-1
position: 14993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19704:-1
position: 19704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14993-19704:-1:exon

LOC101751245
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9031
nc RNA class: lncRNA
gene: LOC101751245
product: uncharacterized LOC101751245
experiment: COORDINATES: cap analysis [ECO:0007248] and polyA evidence [ECO:0006239]
transcript id: XR_005842456.2
SIO_010081: LOC101751245
subclass of: SO_0000673
so part of: LOC101751245
location: complement(join(14993..15160,16549..18936,19403..19704))
location: region:14993-19704:-1
so has part: feature:19403-19704:-1:exon
so has part: feature:16549-18936:-1:exon
so has part: feature:14993-15160:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19403-19704:-1:exon

position:19403:-1
position: 19403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:16549-18936:-1:exon

position:16549:-1
position: 16549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18936:-1
position: 18936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:14993-15160:-1:exon

position:15160:-1
position: 15160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121108160
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC121108160
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 19901..23561
location: region:19901-23561:1
so has part: feature:19901-23561:1:exon
subclass of: SO_0000011

121108160
type: Gene
SIO_000068: ncbigene

position:19901:1
position: 19901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23561:1
position: 23561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19901-23561:1:exon

LOC121108160
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9031
nc RNA class: lncRNA
gene: LOC121108160
product: uncharacterized LOC121108160, transcript variant X1
experiment: COORDINATES: cap analysis [ECO:0007248]
transcript id: XR_005842455.2
SIO_010081: LOC121108160
subclass of: SO_0000673
so part of: LOC121108160
location: join(19901..21007,22627..22738,22836..22942,23189..23561)
location: region:19901-23561:1
so has part: feature:19901-21007:1:exon
so has part: feature:22627-22738:1:exon
so has part: feature:22836-22942:1:exon
so has part: feature:23189-23561:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19901-21007:1:exon

position:21007:1
position: 21007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:22627-22738:1:exon

position:22627:1
position: 22627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22738:1
position: 22738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:22836-22942:1:exon

position:22836:1
position: 22836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22942:1
position: 22942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:23189-23561:1:exon

position:23189:1
position: 23189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121108173
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC121108173
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <24563..41604
location: region:24563-41604:1
so has part: feature:24563-41604:1:exon
subclass of: SO_0000010

121108173
type: Gene
SIO_000068: ncbigene

position:24563:1
position: 24563
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:41604:1
position: 41604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24563-41604:1:exon

LOC121108173
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9031
gene: LOC121108173
product: junctophilin-2-like, transcript variant X1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 6 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_046905074.1
SIO_010081: LOC121108173
subclass of: SO_0000673
so part of: LOC121108173
location: join(<24563..24614,28253..29030,37444..37562,40999..41604)
location: region:24563-41604:1
so has part: feature:24563-24614:1:exon
so has part: feature:28253-29030:1:exon
so has part: feature:37444-37562:1:exon
so has part: feature:40999-41604:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24563-24614:1:exon

position:24614:1
position: 24614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:28253-29030:1:exon

position:28253:1
position: 28253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29030:1
position: 29030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:37444-37562:1:exon

position:37444:1
position: 37444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37562:1
position: 37562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:40999-41604:1:exon

position:40999:1
position: 40999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121108173
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9031
gene: LOC121108173
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: junctophilin-2-like isoform X1
translation: GPASGRRRAAVRRRAACGTYQGQFTNGMRHGYGVRQSVPYGMASVVRSPLRTSLSSLRSEHSNGTLPQQDSPAAHPESLPASPTITRGGFALSLYAEAGKVKKGGLFRRGSLLGKLKKSESKSSLASQKSRVSFLKSESGISSAASDATSTASLGEGAEGEEYPPFESDIDATTTETYMGEWKNDKRSGYGVSERSSGLKYEGEWLDNLRHGYGCTTLPDGKKEEGKYRHNVLVKGMKKRVIPLKSAKIRQKVDRSVEGAQRAAAIARQKSEIAASRTTHAKAKAEGSEQAAQAANNESGIARMMARELSPDFYQPGPEYQKRRLLQEIMENAEHAVNMEEATPPQPKGAPPPPTPPESPQLNEQDEAPRRRSPAPSPAATPPEAKRAKPQQDGALRPGSWAGAGGGGASDGEGRPASQGAVRPAEQMEIRPLQRMAREPDVEHYKGYHSYAVRTSRSPPLRTMRRSRTLSVGRHPRKPQREPQRRGGTPVPTQEPAERHAPQAEAKAEQPHPKELK
SIO_010081: LOC121108173
subclass of: SO_0000673
so part of: LOC121108173
location: join(<24563..24614,28253..29030,37444..37562,40999..41604)
location: region:24563-41604:1
so has part: feature:24563-24614:1:exon
so has part: feature:28253-29030:1:exon
so has part: feature:37444-37562:1:exon
so has part: feature:40999-41604:1:exon

XP_046761030.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24563-24614:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:28253-29030:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:37444-37562:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:40999-41604:1:exon

LOC121108159
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC121108159
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 41707..44160
location: region:41707-44160:1
so has part: feature:41707-44160:1:exon
subclass of: SO_0000011

121108159
type: Gene
SIO_000068: ncbigene

position:41707:1
position: 41707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44160:1
position: 44160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41707-44160:1:exon

LOC121108159
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9031
nc RNA class: lncRNA
gene: LOC121108159
product: uncharacterized LOC121108159
experiment: COORDINATES: cap analysis [ECO:0007248] and polyA evidence [ECO:0006239]
transcript id: XR_005842454.2
SIO_010081: LOC121108159
subclass of: SO_0000673
so part of: LOC121108159
location: join(41707..41779,42975..43072,44046..44160)
location: region:41707-44160:1
so has part: feature:41707-41779:1:exon
so has part: feature:42975-43072:1:exon
so has part: feature:44046-44160:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:41707-41779:1:exon

position:41779:1
position: 41779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:42975-43072:1:exon

position:42975:1
position: 42975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43072:1
position: 43072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:44046-44160:1:exon

position:44046:1
position: 44046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121108157
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC121108157
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(46808..49758)
location: region:46808-49758:-1
so has part: feature:46808-49758:-1:exon
subclass of: SO_0000010

121108157
type: Gene
SIO_000068: ncbigene

position:46808:-1
position: 46808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:49758:-1
position: 49758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46808-49758:-1:exon

LOC121108157
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9031
gene: LOC121108157
product: coiled-coil domain-containing protein 81-like
experiment: COORDINATES: cap analysis [ECO:0007248]
transcript id: XM_040655071.2
SIO_010081: LOC121108157
subclass of: SO_0000673
so part of: LOC121108157
location: complement(join(46808..46930,47086..47342,47544..47697,48128..49758))
location: region:46808-49758:-1
so has part: feature:48128-49758:-1:exon
so has part: feature:47544-47697:-1:exon
so has part: feature:47086-47342:-1:exon
so has part: feature:46808-46930:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:48128-49758:-1:exon

position:48128:-1
position: 48128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:47544-47697:-1:exon

position:47544:-1
position: 47544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47697:-1
position: 47697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:47086-47342:-1:exon

position:47086:-1
position: 47086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47342:-1
position: 47342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:46808-46930:-1:exon

position:46930:-1
position: 46930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121108157
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9031
gene: LOC121108157
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coiled-coil domain-containing protein 81-like
translation: MSSGMAGANKEQPAGTRRNRMSFCEDGPAARRASGPTCTDTEGTRLHSHHRSAAAANLGTQTTLSICHLTPAWQREGCREAAGAECDLLFLCPPERVAVWDAVAAYVQEHLLVQKGVWIPTFGSFDTISRDIRTEDGTVTLRWPVFHLSGNLIAVHHLKPRRESLPAHRKLEPLKSSEVAAAASVTWQTAQACIQSTVSLLSGCLKNGENVAVVFKDIGVLHIDGLTFHMKFYYDFLDKLSGKEKFRKALLKAPWLLDMVVSRAAPVATLALSGCLVVFPK
SIO_010081: LOC121108157
subclass of: SO_0000673
so part of: LOC121108157
location: complement(join(46841..46930,47086..47342,47544..47697,48128..48472))
location: region:46841-48472:-1
so has part: feature:48128-48472:-1:exon
so has part: feature:47544-47697:-1:exon
so has part: feature:47086-47342:-1:exon
so has part: feature:46841-46930:-1:exon

XP_040511005.1
type: Protein
SIO_000068: ncbiprotein

position:46841:-1
position: 46841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48472:-1
position: 48472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48128-48472:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:47544-47697:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:47086-47342:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:46841-46930:-1:exon

LOC121108163
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC121108163
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 50307..55309
location: region:50307-55309:1
so has part: feature:50307-55309:1:exon
subclass of: SO_0000010

121108163
type: Gene
SIO_000068: ncbigene

position:50307:1
position: 50307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55309:1
position: 55309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50307-55309:1:exon

LOC121108163
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9031
gene: LOC121108163
product: uncharacterized LOC121108163, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_040655076.1
SIO_010081: LOC121108163
subclass of: SO_0000673
so part of: LOC121108163
location: join(50307..53692,53970..54032,54286..54600,54940..55016,55150..55309)
location: region:50307-55309:1
so has part: feature:50307-53692:1:exon
so has part: feature:53970-54032:1:exon
so has part: feature:54286-54600:1:exon
so has part: feature:54940-55016:1:exon
so has part: feature:55150-55309:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:50307-53692:1:exon

position:53692:1
position: 53692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:53970-54032:1:exon

position:53970:1
position: 53970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54032:1
position: 54032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:54286-54600:1:exon

position:54286:1
position: 54286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54600:1
position: 54600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:54940-55016:1:exon

position:54940:1
position: 54940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55016:1
position: 55016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:55150-55309:1:exon

position:55150:1
position: 55150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121108163
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9031
gene: LOC121108163
product: uncharacterized LOC121108163, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_040655077.1
SIO_010081: LOC121108163
subclass of: SO_0000673
so part of: LOC121108163
location: join(50307..53282,53569..53692,53970..54032,54286..54600,54940..55016,55150..55309)
location: region:50307-55309:1
so has part: feature:50307-53282:1:exon
so has part: feature:53569-53692:1:exon
so has part: feature:53970-54032:1:exon
so has part: feature:54286-54600:1:exon
so has part: feature:54940-55016:1:exon
so has part: feature:55150-55309:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:50307-53282:1:exon

position:53282:1
position: 53282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:53569-53692:1:exon

position:53569:1
position: 53569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:53970-54032:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:54286-54600:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:54940-55016:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:55150-55309:1:exon

LOC121108163
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9031
gene: LOC121108163
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC121108163 isoform X2
translation: MSQQGDDRGSNCCRVSGKKWRGAVPRGWEQQPAGCQRSNRALQRTEGRNRDGRSFLPYRRMDPARPWSGAGQGGKWKASAERGAEPNGKIYAKAVQEVLLERAHLQAGGLPTTAGPNTGGRPSPAVCPRSVSKSLAGCKRKGLEEAKPTAAQLPANKRVRGPSGDSVPAPAAHPGPAAARSSKLRARRRQEKERRGESMKAALRAAAARAEASAVNSLVEMMQKLQLKD
SIO_010081: LOC121108163
subclass of: SO_0000673
so part of: LOC121108163
location: join(53229..53282,53569..53692,53970..54032,54286..54600,54940..55016,55150..55206)
location: region:53229-55206:1
so has part: feature:53229-53282:1:exon
so has part: feature:53569-53692:1:exon
so has part: feature:53970-54032:1:exon
so has part: feature:54286-54600:1:exon
so has part: feature:54940-55016:1:exon
so has part: feature:55150-55206:1:exon

XP_040511011.1
type: Protein
SIO_000068: ncbiprotein

position:53229:1
position: 53229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55206:1
position: 55206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53229-53282:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:53569-53692:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:53970-54032:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:54286-54600:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:54940-55016:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:55150-55206:1:exon

LOC121108163
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9031
gene: LOC121108163
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC121108163 isoform X1
translation: MCGTIWNLSANLGCPFPPPFLPFSLQKWRGAVPRGWEQQPAGCQRSNRALQRTEGRNRDGRSFLPYRRMDPARPWSGAGQGGKWKASAERGAEPNGKIYAKAVQEVLLERAHLQAGGLPTTAGPNTGGRPSPAVCPRSVSKSLAGCKRKGLEEAKPTAAQLPANKRVRGPSGDSVPAPAAHPGPAAARSSKLRARRRQEKERRGESMKAALRAAAARAEASAVNSLVEMMQKLQLKD
SIO_010081: LOC121108163
subclass of: SO_0000673
so part of: LOC121108163
location: join(53491..53692,53970..54032,54286..54600,54940..55016,55150..55206)
location: region:53491-55206:1
so has part: feature:53491-53692:1:exon
so has part: feature:53970-54032:1:exon
so has part: feature:54286-54600:1:exon
so has part: feature:54940-55016:1:exon
so has part: feature:55150-55206:1:exon

XP_040511010.1
type: Protein
SIO_000068: ncbiprotein

position:53491:1
position: 53491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53491-53692:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:53970-54032:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:54286-54600:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:54940-55016:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:55150-55206:1:exon

LOC107057280
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC107057280
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(54901..59669)
location: region:54901-59669:-1
so has part: feature:54901-59669:-1:exon
subclass of: SO_0000010

107057280
type: Gene
SIO_000068: ncbigene

position:54901:-1
position: 54901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:59669:-1
position: 59669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54901-59669:-1:exon

LOC107057280
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9031
gene: LOC107057280
product: uncharacterized LOC107057280, transcript variant X5
experiment: COORDINATES: cap analysis [ECO:0007248] and polyA evidence [ECO:0006239]
transcript id: XR_006932302.1
SIO_010081: LOC107057280
so part of: LOC107057280
location: complement(join(54901..55068,56455..58841,59537..59567))
location: region:54901-59567:-1
so has part: feature:59537-59567:-1:exon
so has part: feature:56455-58841:-1:exon
so has part: feature:54901-55068:-1:exon

position:59567:-1
position: 59567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59537-59567:-1:exon

position:59537:-1
position: 59537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:56455-58841:-1:exon

position:56455:-1
position: 56455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:58841:-1
position: 58841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:54901-55068:-1:exon

position:55068:-1
position: 55068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC107057280
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9031
gene: LOC107057280
product: uncharacterized LOC107057280, transcript variant X6
experiment: COORDINATES: cap analysis [ECO:0007248] and polyA evidence [ECO:0006239]
transcript id: XR_006932303.1
SIO_010081: LOC107057280
so part of: LOC107057280
location: complement(join(54901..55068,56455..56681,57377..58841,59308..59567))
location: region:54901-59567:-1
so has part: feature:59308-59567:-1:exon
so has part: feature:57377-58841:-1:exon
so has part: feature:56455-56681:-1:exon
so has part: feature:54901-55068:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:59308-59567:-1:exon

position:59308:-1
position: 59308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:57377-58841:-1:exon

position:57377:-1
position: 57377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:56455-56681:-1:exon

position:56681:-1
position: 56681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:54901-55068:-1:exon

LOC107057280
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9031
gene: LOC107057280
product: uncharacterized LOC107057280, transcript variant X4
experiment: COORDINATES: cap analysis [ECO:0007248] and polyA evidence [ECO:0006239]
transcript id: XR_006932301.1
SIO_010081: LOC107057280
so part of: LOC107057280
location: complement(join(54901..55068,56455..58841,59308..59567))
location: region:54901-59567:-1
so has part: feature:59308-59567:-1:exon
so has part: feature:56455-58841:-1:exon
so has part: feature:54901-55068:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:59308-59567:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:56455-58841:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:54901-55068:-1:exon

LOC107057280
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9031
gene: LOC107057280
product: uncharacterized LOC107057280, transcript variant X7
experiment: COORDINATES: cap analysis [ECO:0007248] and polyA evidence [ECO:0006239]
transcript id: XR_006932304.1
SIO_010081: LOC107057280
so part of: LOC107057280
location: complement(join(54901..55068,56455..57441,58757..58958))
location: region:54901-58958:-1
so has part: feature:58757-58958:-1:exon
so has part: feature:56455-57441:-1:exon
so has part: feature:54901-55068:-1:exon

position:58958:-1
position: 58958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58757-58958:-1:exon

position:58757:-1
position: 58757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:56455-57441:-1:exon

position:57441:-1
position: 57441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:54901-55068:-1:exon

LOC107057280
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9031
gene: LOC107057280
product: uncharacterized LOC107057280, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_046905072.1
SIO_010081: LOC107057280
subclass of: SO_0000673
so part of: LOC107057280
location: complement(join(56548..56681,57377..57441,58757..58841,59537..59669))
location: region:56548-59669:-1
so has part: feature:59537-59669:-1:exon
so has part: feature:58757-58841:-1:exon
so has part: feature:57377-57441:-1:exon
so has part: feature:56548-56681:-1:exon

position:56548:-1
position: 56548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59537-59669:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:58757-58841:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:57377-57441:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:56548-56681:-1:exon

LOC107057280
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9031
gene: LOC107057280
product: uncharacterized LOC107057280, transcript variant X1
experiment: COORDINATES: cap analysis [ECO:0007248] and polyA evidence [ECO:0006239]
transcript id: XM_046905071.1
SIO_010081: LOC107057280
subclass of: SO_0000673
so part of: LOC107057280
location: complement(join(56548..56681,58757..58841,59308..59567))
location: region:56548-59567:-1
so has part: feature:59308-59567:-1:exon
so has part: feature:58757-58841:-1:exon
so has part: feature:56548-56681:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:59308-59567:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:58757-58841:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:56548-56681:-1:exon

LOC107057280
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9031
gene: LOC107057280
product: uncharacterized LOC107057280, transcript variant X3
experiment: COORDINATES: cap analysis [ECO:0007248] and polyA evidence [ECO:0006239]
transcript id: XM_040655078.2
SIO_010081: LOC107057280
subclass of: SO_0000673
so part of: LOC107057280
location: complement(join(56548..56681,57377..57441,58757..58841,59308..59567))
location: region:56548-59567:-1
so has part: feature:59308-59567:-1:exon
so has part: feature:58757-58841:-1:exon
so has part: feature:57377-57441:-1:exon
so has part: feature:56548-56681:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:59308-59567:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:58757-58841:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:57377-57441:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:56548-56681:-1:exon

LOC107057280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9031
gene: LOC107057280
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC107057280 isoform X2
translation: MVSGSSVPPPVASPRMRAAPRRKRGMTGAVLRTAAPEAGAGQRYCSSSGSFAAELGSRRCGCERRSTALRAAAKLLPDCCGVTSLSSSLTGPPSPSQDPHSPLMRNPAAIHISGWGSSCAPMPALKRGE
SIO_010081: LOC107057280
subclass of: SO_0000673
so part of: LOC107057280
location: complement(join(56553..56681,57377..57441,58757..58841,59537..59647))
location: region:56553-59647:-1
so has part: feature:59537-59647:-1:exon
so has part: feature:58757-58841:-1:exon
so has part: feature:57377-57441:-1:exon
so has part: feature:56553-56681:-1:exon

XP_046761028.1
type: Protein
SIO_000068: ncbiprotein

position:56553:-1
position: 56553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:59647:-1
position: 59647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59537-59647:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:58757-58841:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:57377-57441:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:56553-56681:-1:exon

LOC107057280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9031
gene: LOC107057280
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC107057280 isoform X1
translation: MPGRGTERGPNPRAVPSAPVRTPPLRSAVGCGDLGRLKDSGPPPPQRCCPHPGRAPPSLQRCSRCPPGLRQEPGSGTAARLAALQLSWEVEDVAVKEESLTGPPSPSQDPHSPLMRNPAAIHISGWGSSCAPMPALKRGE
SIO_010081: LOC107057280
subclass of: SO_0000673
so part of: LOC107057280
location: complement(join(56553..56681,58757..58841,59308..59516))
location: region:56553-59516:-1
so has part: feature:59308-59516:-1:exon
so has part: feature:58757-58841:-1:exon
so has part: feature:56553-56681:-1:exon

XP_046761027.1
type: Protein
SIO_000068: ncbiprotein

position:59516:-1
position: 59516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59308-59516:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:58757-58841:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:56553-56681:-1:exon

LOC107057280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9031
gene: LOC107057280
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC107057280 isoform X3
translation: MPGRGTERGPNPRAVPSAPVRTPPLRSAVGCGDLGRLKDSGPPPPQRCCPHPGRAPPSLQRCSRCPPGLRQEPGSGTAARLAALQLSWEVEDVAVKEEAQLFVQQQSSFLIAVALLHSPHP
SIO_010081: LOC107057280
subclass of: SO_0000673
so part of: LOC107057280
location: complement(join(56675..56681,57377..57441,58757..58841,59308..59516))
location: region:56675-59516:-1
so has part: feature:59308-59516:-1:exon
so has part: feature:58757-58841:-1:exon
so has part: feature:57377-57441:-1:exon
so has part: feature:56675-56681:-1:exon

XP_040511012.1
type: Protein
SIO_000068: ncbiprotein

position:56675:-1
position: 56675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59308-59516:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:58757-58841:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:57377-57441:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:56675-56681:-1:exon

LOC107057254
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC107057254
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(61832..64448)
location: region:61832-64448:-1
so has part: feature:61832-64448:-1:exon
subclass of: SO_0000010

107057254
type: Gene
SIO_000068: ncbigene

position:61832:-1
position: 61832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:64448:-1
position: 64448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:61832-64448:-1:exon

LOC107057254
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9031
gene: LOC107057254
product: nucleoplasmin-like protein ANO39
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_046905075.1
SIO_010081: LOC107057254
subclass of: SO_0000673
so part of: LOC107057254
location: complement(join(61832..62595,63221..63859,64040..64205,64310..64448))
location: region:61832-64448:-1
so has part: feature:64310-64448:-1:exon
so has part: feature:64040-64205:-1:exon
so has part: feature:63221-63859:-1:exon
so has part: feature:61832-62595:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:64310-64448:-1:exon

position:64310:-1
position: 64310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:64040-64205:-1:exon

position:64040:-1
position: 64040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:64205:-1
position: 64205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:63221-63859:-1:exon

position:63221:-1
position: 63221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:63859:-1
position: 63859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:61832-62595:-1:exon

position:62595:-1
position: 62595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC107057254
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9031
gene: LOC107057254
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC107057254
translation: MRAPPERRSHRFPLCSAPPGPERGCAAAIGCGRLLPAPRAARAARGPGSAWHRADRPPVEPAAEDERRHDEDRHDDDDDDDEDEDERSLRTALKKLRLDAARAGAGAGQTRQRSAAQRFGAPFVPSPGQPPQRQHEAAGRSAQSGGSAHCCGAVTPRGTERLLPALPCRACRPRALLFSASGAPELMQPAVLLRGTPGRSGELWHRSFVLPQERILLLSNTSLAKKYPLREERGITLTKQLAFIGSPTTGWVQLRLSPADVPFTCPWLANRRHEDEEEQQQQQQDDDEDEDDDDEDEEERSLRTALQELRVDAARCERTAGGPAGLSRHGRSRSPVLYPPTFTHCGTKHKTRSHTPKTHVRSSVCATAEHGTEDRHSPHFEASHGRRATAEPLLNHRCGACGEVTGELPRSALIVSL
SIO_010081: LOC107057254
subclass of: SO_0000673
so part of: LOC107057254
location: complement(join(62286..62595,63221..63859,64040..64205,64310..64448))
location: region:62286-64448:-1
so has part: feature:64310-64448:-1:exon
so has part: feature:64040-64205:-1:exon
so has part: feature:63221-63859:-1:exon
so has part: feature:62286-62595:-1:exon

XP_046761031.1
type: Protein
SIO_000068: ncbiprotein

position:62286:-1
position: 62286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64310-64448:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:64040-64205:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:63221-63859:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:62286-62595:-1:exon

LOC121108174
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC121108174
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <64482..84062
location: region:64482-84062:1
so has part: feature:64482-84062:1:exon
subclass of: SO_0000010

121108174
type: Gene
SIO_000068: ncbigene

position:64482:1
position: 64482
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:84062:1
position: 84062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64482-84062:1:exon

LOC121108174
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9031
gene: LOC121108174
product: junctophilin-2-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_046905070.1
SIO_010081: LOC121108174
subclass of: SO_0000673
so part of: LOC121108174
location: join(<64482..64533,68165..68948,77346..77464,80910..81688,82877..82974,83948..84062)
location: region:64482-84062:1
so has part: feature:64482-64533:1:exon
so has part: feature:68165-68948:1:exon
so has part: feature:77346-77464:1:exon
so has part: feature:80910-81688:1:exon
so has part: feature:82877-82974:1:exon
so has part: feature:83948-84062:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:64482-64533:1:exon

position:64533:1
position: 64533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:68165-68948:1:exon

position:68165:1
position: 68165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68948:1
position: 68948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:77346-77464:1:exon

position:77346:1
position: 77346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:77464:1
position: 77464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:80910-81688:1:exon

position:80910:1
position: 80910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:81688:1
position: 81688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:82877-82974:1:exon

position:82877:1
position: 82877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:82974:1
position: 82974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:83948-84062:1:exon

position:83948:1
position: 83948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121108174
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9031
gene: LOC121108174
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: junctophilin-2-like
translation: GPASGRRRAAVRRRAACGTYQGQFTNGMRHGYGVRQSVPYGMASVVRSPLRTSLSSLRSEHSNGTLPQQDSPAAHPESLPASPTITRGGFALSLYADAEAGKVKKGGLFRRGSLLGKLKKSESKSSLASQKSRVSFLKSESGISSAASDATSTASLGEGAEGEEYPPFESDIDATTTETYMGEWKNDKRSGYGVSERSSGLKYEGEWLDNLRHGYGCTTLPDGKKEEGKYRHNVLVKGMKKRVIPLKSAKIWQKVDRSVEGAQRAAAIARQKSEIAASRTTHAKAKAEGSEQAAQAANNESGIARMMARELSPDFYQPGPEYQKRRLLQEIMENAEHAVNMEEATPPQPKGAPPPPTPPESPQLHEQDEAPRRRSPAPSPAATPPEAKRAKPQQDGALRPGSWAGAGGGGASDGEGRPASQGAVRPAEQMEIRPLQRMAREPDVEHYKGYHSYAVRTSPVSPTADYEEEPHSERGPPSPEPQREPQRRGGTPVPTQEPAERHAPQAEAKAEQPHPKELK
SIO_010081: LOC121108174
subclass of: SO_0000673
so part of: LOC121108174
location: join(<64482..64533,68165..68948,77346..77464,80910..81514)
location: region:64482-81514:1
so has part: feature:64482-64533:1:exon
so has part: feature:68165-68948:1:exon
so has part: feature:77346-77464:1:exon
so has part: feature:80910-81514:1:exon

XP_046761026.1
type: Protein
SIO_000068: ncbiprotein

position:81514:1
position: 81514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64482-64533:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:68165-68948:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:77346-77464:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:80910-81514:1:exon

LOC121108168
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC121108168
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(87831..91627)
location: region:87831-91627:-1
so has part: feature:87831-91627:-1:exon
subclass of: SO_0000011

121108168
type: Gene
SIO_000068: ncbigene

position:87831:-1
position: 87831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:91627:-1
position: 91627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:87831-91627:-1:exon

LOC121108168
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9031
nc RNA class: lncRNA
gene: LOC121108168
product: uncharacterized LOC121108168, transcript variant X1
experiment: COORDINATES: cap analysis [ECO:0007248]
transcript id: XR_005842462.2
SIO_010081: LOC121108168
subclass of: SO_0000673
so part of: LOC121108168
location: complement(join(87831..90696,90920..91165,91275..91627))
location: region:87831-91627:-1
so has part: feature:91275-91627:-1:exon
so has part: feature:90920-91165:-1:exon
so has part: feature:87831-90696:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:91275-91627:-1:exon

position:91275:-1
position: 91275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:90920-91165:-1:exon

position:90920:-1
position: 90920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:91165:-1
position: 91165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:87831-90696:-1:exon

position:90696:-1
position: 90696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121106483
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC121106483
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(94202..97992)
location: region:94202-97992:-1
so has part: feature:94202-97992:-1:exon
subclass of: SO_0000010

121106483
type: Gene
SIO_000068: ncbigene

position:94202:-1
position: 94202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:97992:-1
position: 97992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94202-97992:-1:exon

LOC121106483
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9031
gene: LOC121106483
product: coiled-coil domain-containing protein 81-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_040655087.1
SIO_010081: LOC121106483
subclass of: SO_0000673
so part of: LOC121106483
location: complement(join(94202..95015,95323..95434,96439..96936,97138..97291,97722..97783,97941..97992))
location: region:94202-97992:-1
so has part: feature:97941-97992:-1:exon
so has part: feature:97722-97783:-1:exon
so has part: feature:97138-97291:-1:exon
so has part: feature:96439-96936:-1:exon
so has part: feature:95323-95434:-1:exon
so has part: feature:94202-95015:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:97941-97992:-1:exon

position:97941:-1
position: 97941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:97722-97783:-1:exon

position:97722:-1
position: 97722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:97783:-1
position: 97783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:97138-97291:-1:exon

position:97138:-1
position: 97138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:97291:-1
position: 97291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:96439-96936:-1:exon

position:96439:-1
position: 96439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:96936:-1
position: 96936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:95323-95434:-1:exon

position:95323:-1
position: 95323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:95434:-1
position: 95434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:94202-95015:-1:exon

position:95015:-1
position: 95015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121106483
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9031
gene: LOC121106483
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC121106483
translation: MAPQLRRASIPTCTDTEERVAVWDAVAAYVQEHLLVQKGVWIPTFGSFDTISRDIRTEDGTVTLRWPVFHLSGNLIAVHHLKPRRESLPAHRKLEPLKSSEVAAAASVTWQTAQACIQSTVSLLSGCLKNGENVAVVFKDIGVLHIDGLTFHMKFYYDFLEKLSGKEKFRKALLKVSCSFLPPAPGQLLAPCKCCGAVSPPCLGLLVRPVPQPSQGHPTSSLFLPCRPPGCWTWWCPERHRWPPWHSLAASSSFPMRFAGKPTFIKRLSSDSLDGGKLRRIRSLLRKESSTSSLLPAIPGVPEDQKQPLTCQLQGQAETDSQEDLGRAPGTKHVSFREEEREAEKAHRVAAVLKLPKANESFSNDSRPSSRAQSSPSQASQGTPSRLPLLACDSVRLLRRRAKKSRQKEPEEMEASTSQAEASQPQESSADRAGFLPPINEETQSPQRQPPNSKAPPRRKGTHYPR
SIO_010081: LOC121106483
subclass of: SO_0000673
so part of: LOC121106483
location: complement(join(94493..95015,95323..95434,96439..96936,97138..97291,97722..97783,97941..97992))
location: region:94493-97992:-1
so has part: feature:97941-97992:-1:exon
so has part: feature:97722-97783:-1:exon
so has part: feature:97138-97291:-1:exon
so has part: feature:96439-96936:-1:exon
so has part: feature:95323-95434:-1:exon
so has part: feature:94493-95015:-1:exon

XP_040511021.1
type: Protein
SIO_000068: ncbiprotein

position:94493:-1
position: 94493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97941-97992:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:97722-97783:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:97138-97291:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:96439-96936:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:95323-95434:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:94493-95015:-1:exon

LOC121106492
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC121106492
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 102255..104682
location: region:102255-104682:1
so has part: feature:102255-104682:1:exon
subclass of: SO_0000010

121106492
type: Gene
SIO_000068: ncbigene

position:102255:1
position: 102255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:104682:1
position: 104682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:102255-104682:1:exon

LOC121106492
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9031
gene: LOC121106492
product: uncharacterized LOC121106492
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 93% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_040655088.1
SIO_010081: LOC121106492
subclass of: SO_0000673
so part of: LOC121106492
location: join(102255..102761,103048..103171,103449..103511,103765..104079,104416..104492,104626..104682)
location: region:102255-104682:1
so has part: feature:102255-102761:1:exon
so has part: feature:103048-103171:1:exon
so has part: feature:103449-103511:1:exon
so has part: feature:103765-104079:1:exon
so has part: feature:104416-104492:1:exon
so has part: feature:104626-104682:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:102255-102761:1:exon

position:102761:1
position: 102761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:103048-103171:1:exon

position:103048:1
position: 103048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:103171:1
position: 103171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:103449-103511:1:exon

position:103449:1
position: 103449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:103511:1
position: 103511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:103765-104079:1:exon

position:103765:1
position: 103765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:104079:1
position: 104079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:104416-104492:1:exon

position:104416:1
position: 104416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:104492:1
position: 104492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:104626-104682:1:exon

position:104626:1
position: 104626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121106492
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9031
gene: LOC121106492
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC121106492
translation: MSQQGDDRGSNCCRVSGKKWRGAVPRGWEQQPAGCQRSNRTLQRTEGRNRDGRSFLPYRRMDPARPWSGAGQGGKRKASAERGAEPNGKIYAKAVQEVLLERAHLQAGGLPTTAGPSTGGRPSPAVCPRSVSKSLAGCKRKGLEEAKPTAVQLPANKRVRGPSGDSVPAPAAHPGPAAARSSKLRARRRQEKERRGESMKAALRAATARAEASAVNSLVEMMQKLQLKD
SIO_010081: LOC121106492
subclass of: SO_0000673
so part of: LOC121106492
location: join(102708..102761,103048..103171,103449..103511,103765..104079,104416..104492,104626..104682)
location: region:102708-104682:1
so has part: feature:102708-102761:1:exon
so has part: feature:103048-103171:1:exon
so has part: feature:103449-103511:1:exon
so has part: feature:103765-104079:1:exon
so has part: feature:104416-104492:1:exon
so has part: feature:104626-104682:1:exon

XP_040511022.1
type: Protein
SIO_000068: ncbiprotein

position:102708:1
position: 102708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:102708-102761:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:103048-103171:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:103449-103511:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:103765-104079:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:104416-104492:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:104626-104682:1:exon

LOC121108171
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC121108171
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(112988..113920)
location: region:112988-113920:-1
so has part: feature:112988-113920:-1:exon
subclass of: SO_0000011

121108171
type: Gene
SIO_000068: ncbigene

position:112988:-1
position: 112988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:113920:-1
position: 113920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:112988-113920:-1:exon

LOC121108171
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9031
nc RNA class: lncRNA
gene: LOC121108171
product: uncharacterized LOC121108171
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
transcript id: XR_005842465.1
SIO_010081: LOC121108171
subclass of: SO_0000673
so part of: LOC121108171
location: complement(join(112988..113013,113260..113371,113896..113920))
location: region:112988-113920:-1
so has part: feature:113896-113920:-1:exon
so has part: feature:113260-113371:-1:exon
so has part: feature:112988-113013:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:113896-113920:-1:exon

position:113896:-1
position: 113896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:113260-113371:-1:exon

position:113260:-1
position: 113260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:113371:-1
position: 113371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:112988-113013:-1:exon

position:113013:-1
position: 113013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121108169
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC121108169
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 118218..118989
location: region:118218-118989:1
so has part: feature:118218-118989:1:exon
subclass of: SO_0000011

121108169
type: Gene
SIO_000068: ncbigene

position:118218:1
position: 118218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:118989:1
position: 118989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:118218-118989:1:exon

LOC121108169
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9031
nc RNA class: lncRNA
gene: LOC121108169
product: uncharacterized LOC121108169
experiment: COORDINATES: cap analysis [ECO:0007248] and polyA evidence [ECO:0006239]
transcript id: XR_005842463.2
SIO_010081: LOC121108169
subclass of: SO_0000673
so part of: LOC121108169
location: join(118218..118326,118613..118989)
location: region:118218-118989:1
so has part: feature:118218-118326:1:exon
so has part: feature:118613-118989:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:118218-118326:1:exon

position:118326:1
position: 118326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:118613-118989:1:exon

position:118613:1
position: 118613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121108167
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC121108167
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 125717..131825
location: region:125717-131825:1
so has part: feature:125717-131825:1:exon
subclass of: SO_0000011

121108167
type: Gene
SIO_000068: ncbigene

position:125717:1
position: 125717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:131825:1
position: 131825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:125717-131825:1:exon

LOC121108167
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9031
nc RNA class: lncRNA
gene: LOC121108167
product: uncharacterized LOC121108167
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
transcript id: XR_005842461.1
SIO_010081: LOC121108167
subclass of: SO_0000673
so part of: LOC121108167
location: join(125717..126308,127889..131159,131373..131825)
location: region:125717-131825:1
so has part: feature:125717-126308:1:exon
so has part: feature:127889-131159:1:exon
so has part: feature:131373-131825:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:125717-126308:1:exon

position:126308:1
position: 126308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:127889-131159:1:exon

position:127889:1
position: 127889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:131159:1
position: 131159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:131373-131825:1:exon

position:131373:1
position: 131373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121108165
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC121108165
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(136069..138804)
location: region:136069-138804:-1
so has part: feature:136069-138804:-1:exon
subclass of: SO_0000010

121108165
type: Gene
SIO_000068: ncbigene

position:136069:-1
position: 136069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:138804:-1
position: 138804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:136069-138804:-1:exon

LOC121108165
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9031
gene: LOC121108165
product: nucleoplasmin-like protein ANO39, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_040655081.2
SIO_010081: LOC121108165
subclass of: SO_0000673
so part of: LOC121108165
location: complement(join(136069..136845,137471..137602,138258..138804))
location: region:136069-138804:-1
so has part: feature:138258-138804:-1:exon
so has part: feature:137471-137602:-1:exon
so has part: feature:136069-136845:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:138258-138804:-1:exon

position:138258:-1
position: 138258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:137471-137602:-1:exon

position:137471:-1
position: 137471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:137602:-1
position: 137602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:136069-136845:-1:exon

position:136845:-1
position: 136845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121108165
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9031
gene: LOC121108165
product: nucleoplasmin-like protein ANO39, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_040655082.1
SIO_010081: LOC121108165
subclass of: SO_0000673
so part of: LOC121108165
location: complement(join(136069..136484,136780..136845,137471..137602,138258..138706))
location: region:136069-138706:-1
so has part: feature:138258-138706:-1:exon
so has part: feature:137471-137602:-1:exon
so has part: feature:136780-136845:-1:exon
so has part: feature:136069-136484:-1:exon

position:138706:-1
position: 138706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:138258-138706:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:137471-137602:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:136780-136845:-1:exon

position:136780:-1
position: 136780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:136069-136484:-1:exon

position:136484:-1
position: 136484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121108165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9031
gene: LOC121108165
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nucleoplasmin-like protein ANO39 isoform X2
translation: MQALSRKRPRPGPTHARSSRAALAPLPAVLGAPRAGARLRGGHWLRAAPPRASGSSGSSGPCGDGRAGTASPGPRAARVRAVRSPLTAGPARCVAAGSAWHRADRPPVEPAAEDERRHDEDRHDDDDDDDDEDERSLRTALKKLRLDAARRHEDEEEQQQQQQDDDEDEDDDDEDEEERSLRTALQELRVDAARCERTAGGPAGLSRHGRSRSPVLSICETALCSPPASRSVEAHAYGSDVTVEDLAGYLEHHLHIPKKMSAMAEMMYS
SIO_010081: LOC121108165
subclass of: SO_0000673
so part of: LOC121108165
location: complement(join(136322..136484,136780..136845,137471..137602,138258..138706))
location: region:136322-138706:-1
so has part: feature:138258-138706:-1:exon
so has part: feature:137471-137602:-1:exon
so has part: feature:136780-136845:-1:exon
so has part: feature:136322-136484:-1:exon

XP_040511016.1
type: Protein
SIO_000068: ncbiprotein

position:136322:-1
position: 136322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:138258-138706:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:137471-137602:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:136780-136845:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:136322-136484:-1:exon

LOC121108165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9031
gene: LOC121108165
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nucleolar GTP-binding protein 2-like isoform X1
translation: MQALSRKRPRPGPTHARSSRAALAPLPAVLGAPRAGARLRGGHWLRAAPPRASGSSGSSGPCGDGRAGTASPGPRAARVRAVRSPLTAGPARCVAAGSAWHRADRPPVEPAAEDERRHDEDRHDDDDDDDDEDERSLRTALKKLRLDAARRHEDEEEQQQQQQDDDEDEDDDDEDEEERSLRTALQELRVDAARCERTAGGPAGLSRHGRSRSPVLYPPTFTHCGTKHKTRSHTPKTHVRSSVCATAEHGTEDRHSPHFEASHGRRATAEPLLNHRCGACGEVTGELPRSALIVSL
SIO_010081: LOC121108165
subclass of: SO_0000673
so part of: LOC121108165
location: complement(join(136536..136845,137471..137602,138258..138706))
location: region:136536-138706:-1
so has part: feature:138258-138706:-1:exon
so has part: feature:137471-137602:-1:exon
so has part: feature:136536-136845:-1:exon

XP_040511015.1
type: Protein
SIO_000068: ncbiprotein

position:136536:-1
position: 136536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:138258-138706:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:137471-137602:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:136536-136845:-1:exon

LOC121108166
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC121108166
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 136723..137705
location: region:136723-137705:1
so has part: feature:136723-137705:1:exon
subclass of: SO_0000011

121108166
type: Gene
SIO_000068: ncbigene

position:136723:1
position: 136723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:137705:1
position: 137705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:136723-137705:1:exon

LOC121108166
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9031
nc RNA class: lncRNA
gene: LOC121108166
product: uncharacterized LOC121108166, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_005842460.1
SIO_010081: LOC121108166
subclass of: SO_0000673
so part of: LOC121108166
location: join(136723..136870,136968..137074,137321..137705)
location: region:136723-137705:1
so has part: feature:136723-136870:1:exon
so has part: feature:136968-137074:1:exon
so has part: feature:137321-137705:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:136723-136870:1:exon

position:136870:1
position: 136870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:136968-137074:1:exon

position:136968:1
position: 136968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:137074:1
position: 137074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:137321-137705:1:exon

position:137321:1
position: 137321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121108170
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC121108170
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 138679..141562
location: region:138679-141562:1
so has part: feature:138679-141562:1:exon
subclass of: SO_0000011

121108170
type: Gene
SIO_000068: ncbigene

position:138679:1
position: 138679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:141562:1
position: 141562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:138679-141562:1:exon

LOC121108170
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9031
nc RNA class: lncRNA
gene: LOC121108170
product: uncharacterized LOC121108170, transcript variant X1
experiment: COORDINATES: cap analysis [ECO:0007248] and polyA evidence [ECO:0006239]
transcript id: XR_005842464.2
SIO_010081: LOC121108170
subclass of: SO_0000673
so part of: LOC121108170
location: join(138679..138757,141375..141562)
location: region:138679-141562:1
so has part: feature:138679-138757:1:exon
so has part: feature:141375-141562:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:138679-138757:1:exon

position:138757:1
position: 138757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:141375-141562:1:exon

position:141375:1
position: 141375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC107049939
type: Gene
subclass of: SO_0000704
RO_0002162: 9031
gene: LOC107049939
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(141675..145545)
location: region:141675-145545:-1
so has part: feature:141675-145545:-1:exon
subclass of: SO_0000010

107049939
type: Gene
SIO_000068: ncbigene

position:141675:-1
position: 141675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:145545:-1
position: 145545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:141675-145545:-1:exon

LOC107049939
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9031
gene: LOC107049939
product: coiled-coil domain-containing protein 81-like, transcript variant X1
experiment: COORDINATES: cap analysis [ECO:0007248]
transcript id: XM_040655080.2
SIO_010081: LOC107049939
subclass of: SO_0000673
so part of: LOC107049939
location: complement(join(141675..142454,142762..142873,143394..143518,143876..143961,144117..144373,144575..144728,145158..145219,145376..145545))
location: region:141675-145545:-1
so has part: feature:145376-145545:-1:exon
so has part: feature:145158-145219:-1:exon
so has part: feature:144575-144728:-1:exon
so has part: feature:144117-144373:-1:exon
so has part: feature:143876-143961:-1:exon
so has part: feature:143394-143518:-1:exon
so has part: feature:142762-142873:-1:exon
so has part: feature:141675-142454:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:145376-145545:-1:exon

position:145376:-1
position: 145376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:145158-145219:-1:exon

position:145158:-1
position: 145158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:145219:-1
position: 145219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:144575-144728:-1:exon

position:144575:-1
position: 144575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:144728:-1
position: 144728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:144117-144373:-1:exon

position:144117:-1
position: 144117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:144373:-1
position: 144373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:143876-143961:-1:exon

position:143876:-1
position: 143876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:143961:-1
position: 143961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:143394-143518:-1:exon

position:143394:-1
position: 143394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:143518:-1
position: 143518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:142762-142873:-1:exon

position:142762:-1
position: 142762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:142873:-1
position: 142873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:141675-142454:-1:exon

position:142454:-1
position: 142454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC107049939
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9031
gene: LOC107049939
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coiled-coil domain-containing protein 81-like isoform X1
translation: MSSGMAGANKEQPAGTRRNRMSFCEDGPAARRASIPTCTDTEERVAVWDAVAAYVQEHLLVQKGVWIPTFGSFDTISRDIRTEDGTVTLRWPVFHLSGNLIAVHHLKPRRESLPAHRKLEPLKSSEVAAAASVTWQTAQACIQSTVSLLSGCLKNGENVAVVFKDIGVLHIDGLTFHMKFYYDFLEKLSGKEKFRKALLKAPWLLDMVVSRAAPVASLALSGCLVVFPKFQMEFVPKPPPGICRRSSGGIPAEGKPKEEEALPPLAQGKKVRFAGKPTFIKRLSSDSLDGGKLRRIRSLLRKESSTSSLLPAIPGVPEDQKQPLTCQLQGQAETDSQEDLGRAPGTKHVSFCEEEQEAEKAHRVAAVLKLPKANESFSKDSRPSSRAQSSPSQASQGTPSRLPLLACDSVRLLRRRAKKSRQKEPEEMEASTSQAEASQPQESSADRAGFLPPINEETQSPQRQPPDTKAPPRRKGTPYPR
SIO_010081: LOC107049939
subclass of: SO_0000673
so part of: LOC107049939
location: complement(join(141932..142454,142762..142873,143394..143518,143876..143961,144117..144373,144575..144728,145158..145219,145376..145502))
location: region:141932-145502:-1
so has part: feature:145376-145502:-1:exon
so has part: feature:145158-145219:-1:exon
so has part: feature:144575-144728:-1:exon
so has part: feature:144117-144373:-1:exon
so has part: feature:143876-143961:-1:exon
so has part: feature:143394-143518:-1:exon
so has part: feature:142762-142873:-1:exon
so has part: feature:141932-142454:-1:exon

XP_040511014.1
type: Protein
SIO_000068: ncbiprotein

position:141932:-1
position: 141932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:145502:-1
position: 145502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:145376-145502:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:145158-145219:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:144575-144728:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:144117-144373:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:143876-143961:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:143394-143518:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:142762-142873:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:141932-142454:-1:exon