Gallus gallus isolate bGalGal1 chromosome 36, bGalGal1.mat.broiler.GRCg7b, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM028517.1.\nAssembly name: bGalGal1.mat.broiler.GRCg7b\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/01/19. The original whole-genome shotgun project has the\naccession JAENSK000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 22-JUL-2020\nAssembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0;\n Scaff 10x v. 4.1.0; Bionano solve v.\n 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow\n polishing and gap filling v.\n SMRTLink7.0.1; Freebayes v. 1.3.1; gEVAL\n manual curation v. 2020-07-22; VGP trio\n assembly pipeline v. 1.6\nAssembly Name :: bGalGal1.mat.broiler.GRCg7b\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 102.01x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Gallus gallus Annotation Release 106\nAnnotation Version :: 106\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized transmembrane protein DDB_G0289901-like, transcript variant X1
uncharacterized transmembrane protein DDB_G0289901-like isoform X1
zinc finger protein 668-like, transcript variant X1
COORDINATES: cap analysis [ECO:0007248] and polyA evidence [ECO:0006239]
zinc finger protein 668-like, transcript variant X2
uncharacterized LOC100858386, transcript variant X7
uncharacterized LOC100858386, transcript variant X2
uncharacterized LOC100858386, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 long SRA reads, 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
uncharacterized LOC100858386, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 long SRA reads, 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns
uncharacterized LOC100858386, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 long SRA reads, 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
uncharacterized LOC100858386, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 long SRA reads, 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
uncharacterized LOC100858386, transcript variant X6
uncharacterized protein LOC100858386 isoform X1
uncharacterized protein LOC100858386 isoform X5
uncharacterized protein LOC100858386 isoform X6
uncharacterized protein LOC100858386 isoform X3
uncharacterized protein LOC100858386 isoform X4
uncharacterized protein LOC100858386 isoform X2
uncharacterized protein LOC100858386 isoform X7
COORDINATES: polyA evidence [ECO:0006239]
myosin light chain kinase, smooth muscle-like, transcript variant X6
myosin light chain kinase, smooth muscle-like, transcript variant X1
myosin light chain kinase, smooth muscle-like, transcript variant X8
myosin light chain kinase, smooth muscle-like, transcript variant X7
myosin light chain kinase, smooth muscle-like, transcript variant X2
myosin light chain kinase, smooth muscle-like, transcript variant X5
myosin light chain kinase, smooth muscle-like, transcript variant X4
myosin light chain kinase, smooth muscle-like, transcript variant X3
myosin light chain kinase, smooth muscle-like, transcript variant X9
myosin light chain kinase, smooth muscle-like isoform X1
myosin light chain kinase, smooth muscle-like isoform X8
myosin light chain kinase, smooth muscle-like isoform X7
myosin light chain kinase, smooth muscle-like isoform X2
myosin light chain kinase, smooth muscle-like isoform X5
myosin light chain kinase, smooth muscle-like isoform X4
myosin light chain kinase, smooth muscle-like isoform X3
myosin light chain kinase, smooth muscle-like isoform X9
myosin light chain kinase, smooth muscle-like isoform X6
polyserase-2-like, transcript variant X1
vitamin K epoxide reductase complex, subunit 1; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
vitamin K epoxide reductase complex, subunit 1, transcript variant X1
vitamin K epoxide reductase complex, subunit 1
similar to RNA sequence, mRNA (same species):RefSeq:NM_001395922.1
annotated by transcript or proteomic data
The RefSeq transcript has 4 substitutions compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
similar to AA sequence (same species):RefSeq:NP_001382851.1
The RefSeq protein has 1 substitution compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
vitamin K epoxide reductase complex subunit 1 precursor
COORDINATES: ab initio prediction:SignalP:4.0
vitamin K epoxide reductase complex subunit 1 isoform X1
branched chain keto acid dehydrogenase kinase, transcript variant X1
branched chain keto acid dehydrogenase kinase, transcript variant X2
branched chain keto acid dehydrogenase kinase, transcript variant X3
branched chain keto acid dehydrogenase kinase, transcript variant X6
3-methyl-2-oxobutanoate dehydrogenase [lipoamide] kinase, mitochondrial isoform X1
3-methyl-2-oxobutanoate dehydrogenase [lipoamide] kinase, mitochondrial isoform X2
3-methyl-2-oxobutanoate dehydrogenase [lipoamide] kinase, mitochondrial isoform X3
branched chain keto acid dehydrogenase kinase, transcript variant X5
branched chain keto acid dehydrogenase kinase, transcript variant X4
3-methyl-2-oxobutanoate dehydrogenase [lipoamide] kinase, mitochondrial isoform X4
3-methyl-2-oxobutanoate dehydrogenase [lipoamide] kinase, mitochondrial isoform X5
S-antigen protein-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
FUS RNA binding protein; Derived by automated computational analysis using gene prediction method: BestRefSeq.
similar to RNA sequence, mRNA (same species):RefSeq:NM_001001531.1
The RefSeq transcript has 2 substitutions and aligns at 44% coverage compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
similar to AA sequence (same species):RefSeq:NP_001001531.1
The RefSeq protein aligns at 46% coverage compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
lysine acetyltransferase 8, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 90% coverage of the annotated genomic feature by RNAseq alignments
histone acetyltransferase KAT8 isoform X1
uncharacterized LOC425117, transcript variant X1
uncharacterized protein LOC425117 isoform X1
translational activator of cytochrome c oxidase 1
sodium/glucose cotransporter 2-like, transcript variant X1
sodium/glucose cotransporter 2-like, transcript variant X2
sodium/glucose cotransporter 2-like isoform X1
sodium/glucose cotransporter 2-like isoform X2
RUS family member 1-like, transcript variant X2
RUS family member 1-like, transcript variant X1
translation initiation factor IF-2-like, transcript variant X1
translation initiation factor IF-2-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
translation initiation factor IF-2-like isoform X1
translation initiation factor IF-2-like isoform X2