Gallus gallus isolate bGalGal1 chromosome 32, bGalGal1.mat.broiler.GRCg7b, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM028513.1.\nAssembly name: bGalGal1.mat.broiler.GRCg7b\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/01/19. The original whole-genome shotgun project has the\naccession JAENSK000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 22-JUL-2020\nAssembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0;\n Scaff 10x v. 4.1.0; Bionano solve v.\n 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow\n polishing and gap filling v.\n SMRTLink7.0.1; Freebayes v. 1.3.1; gEVAL\n manual curation v. 2020-07-22; VGP trio\n assembly pipeline v. 1.6\nAssembly Name :: bGalGal1.mat.broiler.GRCg7b\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 102.01x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Gallus gallus Annotation Release 106\nAnnotation Version :: 106\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
CLK4-associating serine/arginine rich protein-like
COORDINATES: polyA evidence [ECO:0006239]
trichohyalin-like, transcript variant X6
COORDINATES: cap analysis [ECO:0007248] and polyA evidence [ECO:0006239]
trichohyalin-like, transcript variant X5
trichohyalin-like, transcript variant X9
trichohyalin-like, transcript variant X4
trichohyalin-like, transcript variant X3
trichohyalin-like, transcript variant X2
trichohyalin-like, transcript variant X10
trichohyalin-like, transcript variant X1
uncharacterized protein LOC112531397 isoform X3
uncharacterized protein LOC112531397 isoform X2
uncharacterized protein LOC112531397 isoform X7
uncharacterized protein LOC112531397 isoform X1
trichohyalin-like, transcript variant X8
uncharacterized protein LOC112531397 isoform X5
uncharacterized LOC112531416, transcript variant X3
uncharacterized LOC112531416, transcript variant X2
uncharacterized LOC112531416, transcript variant X1
trichohyalin-like, transcript variant X13
trichohyalin-like, transcript variant X12
trichohyalin-like, transcript variant X11
uncharacterized LOC112531419, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 39 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
uncharacterized LOC112531419, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 30 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
uncharacterized LOC112531419, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 36 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
uncharacterized protein LOC112531397 isoform X8
trichohyalin-like, transcript variant X7
uncharacterized protein LOC112531397 isoform X4
uncharacterized LOC112531391, transcript variant X1
uncharacterized protein LOC112531391 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized protein LOC121112692 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 85% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized protein LOC112531398 isoform X1
coiled-coil domain-containing protein 81-like, transcript variant X1
coiled-coil domain-containing protein 81-like, transcript variant X2
outer dense fiber protein 2-like, transcript variant X2
outer dense fiber protein 2-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized protein LOC124417000 isoform X1