Gallus gallus isolate bGalGal1 chromosome 29, bGalGal1.mat.broiler.GRCg7b, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM028510.1.\nAssembly name: bGalGal1.mat.broiler.GRCg7b\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/01/19. The original whole-genome shotgun project has the\naccession JAENSK000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 22-JUL-2020\nAssembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0;\n Scaff 10x v. 4.1.0; Bionano solve v.\n 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow\n polishing and gap filling v.\n SMRTLink7.0.1; Freebayes v. 1.3.1; gEVAL\n manual curation v. 2020-07-22; VGP trio\n assembly pipeline v. 1.6\nAssembly Name :: bGalGal1.mat.broiler.GRCg7b\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 102.01x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Gallus gallus Annotation Release 106\nAnnotation Version :: 106\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 67% coverage of the annotated genomic feature by RNAseq alignments
zinc finger protein 664-like, transcript variant X1
COORDINATES: cap analysis [ECO:0007248] and polyA evidence [ECO:0006239]
zinc finger protein 664-like, transcript variant X2
zinc finger protein 420-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 81 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
zinc finger protein 420-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 81 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
gastrula zinc finger protein XlCGF7.1-like, transcript variant X1
gastrula zinc finger protein XlCGF7.1-like, transcript variant X2
gastrula zinc finger protein XlCGF7.1-like
zinc finger protein 253-like, transcript variant X1
zinc finger protein 135-like, transcript variant X1
zinc finger protein 135-like, transcript variant X2
zinc finger protein 501-like, transcript variant X1
zinc finger protein 501-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 47 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 68 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 47 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 64 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 27 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 23 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
zinc finger protein 707-like, transcript variant X2
zinc finger protein 707-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 long SRA reads, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 47 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
zinc finger protein 160-like, transcript variant X3
zinc finger protein 160-like, transcript variant X2
zinc finger protein 160-like, transcript variant X1
uncharacterized LOC121107787, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 95% coverage of the annotated genomic feature by RNAseq alignments
zinc finger protein 100-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 long SRA reads, 295 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
zinc finger protein 485-like, transcript variant X2
zinc finger protein 135-like, transcript variant X3
zinc finger protein 135-like, transcript variant X4
zinc finger protein 501-like, transcript variant X3
zinc finger protein 485-like, transcript variant X1
zinc finger protein 485-like, transcript variant X3
olfactory receptor 14J1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, and 98% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 4 long SRA reads, 58 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein 135-like
zinc finger protein 34-like, transcript variant X3
zinc finger protein 34-like, transcript variant X1
zinc finger protein 34-like, transcript variant X2
uncharacterized LOC121107785, transcript variant X6
uncharacterized LOC121107785, transcript variant X8
uncharacterized LOC121107785, transcript variant X7
uncharacterized LOC121107785, transcript variant X3
uncharacterized LOC121107785, transcript variant X4
uncharacterized LOC121107785, transcript variant X5
uncharacterized LOC121107785, transcript variant X1
uncharacterized LOC121107785, transcript variant X2
uncharacterized LOC101747443, transcript variant X1
uncharacterized LOC101747443, transcript variant X4
uncharacterized LOC101747443, transcript variant X2
uncharacterized LOC101747443, transcript variant X5
uncharacterized LOC101747443, transcript variant X6
uncharacterized LOC101747443, transcript variant X3
zinc finger protein 555, transcript variant X2
zinc finger protein 624, transcript variant X1
zinc finger protein 624, transcript variant X7
zinc finger protein 624, transcript variant X3
zinc finger protein 624, transcript variant X6
zinc finger protein 555, transcript variant X1
zinc finger protein 624, transcript variant X4
uncharacterized LOC121107786, transcript variant X4
uncharacterized LOC121107786, transcript variant X3
uncharacterized LOC121107786, transcript variant X2
uncharacterized LOC121107786, transcript variant X1
zinc finger protein 624, transcript variant X5
zinc finger protein 624, transcript variant X2
zinc finger protein 624, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 1 Protein, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 1 Protein, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 66 samples with support for all annotated introns