Numida meleagris isolate 19003 mitochondrion, complete genome.
mitochondrion Numida meleagris (helmeted guineafowl)
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Numididae; Numida.
Guinea fowl genome sequence and diversity
Submitted (20-APR-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (04-APR-2017) GenPhySE, INRA, Chemin de Borde Rouge, Castanet Tolosan 31326, France
REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to KY865420.\n\nOn Apr 20, 2017 this sequence version replaced NC_006382.1.\nThe AllPaths contigs were aligned on the Gallus_gallus-5.0 assembly\n(GCF_000002315.4) to obtain an assembly at the chromosome level,\ntaking into account the rare known inter-chromosomal rearrangements\ndetected by cytogenetic mapping. Comparison of cytogenetic and\ngenetic maps from several gallo-anseriformes showed very limited\nnumber of inter-chromosomal rearrangements, all distinguishable by\ncytogenetics methods. No inter-chromosomal rearrangements between\nducks and galliforme chromosomes were detected to date. Therefore,\na chromosome assignment of Numida scaffolds based on\nGallus_gallus-5.0 is correct. However, many intra-chromosomal\nrearrangements will be missed in regions composed of small\nscaffolds. Linkage of gaps in the assembly can therefore be\ninformed by paired-end or mate-pair information, in which case the\nnumber of Ns corresponds to the estimated size of the gap, or to\nthe alignment to Gallus_gallus-5.0, in which case we inserted 100\nNs. However, there are a few cases in which the paired-ends (or\nmate-pairs) gaps have 100 Ns. Following the alignment of the Numida\nscaffolds on the Gallus_gallus-5.0 genome, a few scaffolds had to\nbe split and are thus named scaffoldXXA and scaffoldXXB. The\nnuclear genome is in WGS project MTSP00000000.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUL-2013\nAssembly Method :: AllPaths v. July-2013\nAssembly Name :: NumMel1.0\nReference-guided Assembly :: Gallus_gallus-5.0 (GCF_000002315.4)\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\nCOMPLETENESS: full length.
TAA stop codon is completed by the addition of 3' A residues to the mRNA
frameshift mechanism unknown (Mindelll et al., 1998, Mol. Biol. Evol., 15:1568-1571)