Falco peregrinus isolate bFalPer1 chromosome 20, bFalPer1.pri, whole genome shotgun sequence.
type: Entry
definition: Falco peregrinus isolate bFalPer1 chromosome 20, bFalPer1.pri, whole genome shotgun sequence.
sequence version: NC_073741.1
sequence date: 2023-05-02
sequence: sequence
division: CON
label: NC_073741.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA962079
dblink: SAMN28688290
keyword: WGS
keyword: RefSeq
source: Falco peregrinus (peregrine falcon)
organism: Falco peregrinus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Falconiformes; Falconidae; Falco.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM042649.1.\nAssembly name: bFalPer1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2022/06/02. The original whole-genome shotgun project has the\naccession JAMOAR000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 14-DEC-2021\nAssembly Method :: Hifiasm v. 0.13.0; purge_dups v. 1.2.3;\n bionano solve v. 3.6.1; salsa2 v. 2.2;\n VGP pipeline v. 2.0; gEVAL v. curation\nAssembly Name :: bFalPer1.pri\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 28x\nSequencing Technology :: PacBio Sequel II HiFi; Arima Genomics\n Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_023634155.1-RS_2023_04\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Best-placed RefSeq; Gnomon;\n cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 04/26/2023\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 293315
topology: linear
so has quality: SO_0000987
location: 1..293315
location: region:1-293315:1
RO_0002162: 8954

NC_073741
type: RefSeq
SIO_000068: refseq

PRJNA962079
type: BioProject
SIO_000068: bioproject

SAMN28688290
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:293315:1
position: 293315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-293315:1:source
so part of: sequence
organism: Falco peregrinus
mol type: genomic DNA
isolate: bFalPer1
chromosome: 20
sex: female
tissue type: blood
dev stage: adult
country: Qatar: Doha
lat lon: 25.286106 N 51.534817 E
collection date: 2020-02-16
collected by: Farooq Omar Al-Ajli, Souq Waqif Falcon Hospital

8954
type: Taxonomy
SIO_000068: taxonomy

PPP1R13L
type: Gene
subclass of: SO_0000704
RO_0002162: 8954
gene: PPP1R13L
note: protein phosphatase 1 regulatory subunit 13 like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <222..11601
location: region:222-11601:1
so has part: feature:222-11601:1:exon
subclass of: SO_0000010

106112970
type: Gene
SIO_000068: ncbigene

position:222:1
position: 222
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:11601:1
position: 11601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222-11601:1:exon

PPP1R13L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: PPP1R13L
product: protein phosphatase 1 regulatory subunit 13 like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 5 bases in 5 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_055792473.1
SIO_010081: PPP1R13L
subclass of: SO_0000673
so part of: PPP1R13L
location: join(<222..677,2560..2697,4362..4496,5175..5342,8571..8775,11301..11601)
location: region:222-11601:1
so has part: feature:222-677:1:exon
so has part: feature:2560-2697:1:exon
so has part: feature:4362-4496:1:exon
so has part: feature:5175-5342:1:exon
so has part: feature:8571-8775:1:exon
so has part: feature:11301-11601:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:222-677:1:exon

position:677:1
position: 677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2560-2697:1:exon

position:2560:1
position: 2560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2697:1
position: 2697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4362-4496:1:exon

position:4362:1
position: 4362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4496:1
position: 4496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5175-5342:1:exon

position:5175:1
position: 5175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5342:1
position: 5342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:8571-8775:1:exon

position:8571:1
position: 8571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8775:1
position: 8775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:11301-11601:1:exon

position:11301:1
position: 11301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PPP1R13L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: PPP1R13L
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 5 bases in 5 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 3
product: LOW QUALITY PROTEIN: relA-associated inhibitor
translation: CGRPPPTPDPISAEPEPELEGLLQGGEGEGLQRPLSPTRLQPLLPPEAQRDPEFQEVARVLAEMPRPLKRRGSMEQCPPPTLPPTRTRQYQQLITRLLHRPPRRDEPPLPGDTAAASPEMSPPAPGVPENPQSPPPPAPGSPPPATVSTRSERRSALRDPSSPRRRPGARVRLNPLVLLLDAALTGELDVVQQAVAELNDPSQPNDEGITALHNAICGANYAIVDFLIASGANVNSPDSHGWTPLHCAASCNDTGVCVALVRHGAAIFATTTSDGSLAVEKCDPYRQGYADCYNYLTEVEQSMGVLNSGVVYALWDYSAEFGDELSFRRGRARHRAAPASPRRSSTGWRGSLYGHEGYVPRNYFGLFPRVRPQRKKV
SIO_010081: PPP1R13L
subclass of: SO_0000673
so part of: PPP1R13L
location: join(<222..677,2560..2697,4362..4496,5175..5342,8571..8775,11301..11339)
location: region:222-11339:1
so has part: feature:222-677:1:exon
so has part: feature:2560-2697:1:exon
so has part: feature:4362-4496:1:exon
so has part: feature:5175-5342:1:exon
so has part: feature:8571-8775:1:exon
so has part: feature:11301-11339:1:exon

XP_055648448.1
type: Protein
SIO_000068: ncbiprotein

position:11339:1
position: 11339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222-677:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2560-2697:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4362-4496:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5175-5342:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8571-8775:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11301-11339:1:exon

LOC101921310
type: Gene
subclass of: SO_0000704
RO_0002162: 8954
gene: LOC101921310
note: leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(16026..69519)
location: region:16026-69519:-1
so has part: feature:16026-69519:-1:exon
subclass of: SO_0000010

101921310
type: Gene
SIO_000068: ncbigene

position:16026:-1
position: 16026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:69519:-1
position: 69519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16026-69519:-1:exon

LOC101921310
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: LOC101921310
product: leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
transcript id: XM_055792486.1
SIO_010081: LOC101921310
subclass of: SO_0000673
so part of: LOC101921310
location: complement(join(16026..17108,26380..27774,69337..69519))
location: region:16026-69519:-1
so has part: feature:69337-69519:-1:exon
so has part: feature:26380-27774:-1:exon
so has part: feature:16026-17108:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:69337-69519:-1:exon

position:69337:-1
position: 69337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:26380-27774:-1:exon

position:26380:-1
position: 26380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27774:-1
position: 27774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:16026-17108:-1:exon

position:17108:-1
position: 17108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC101921310
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: LOC101921310
product: leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
transcript id: XM_055792487.1
SIO_010081: LOC101921310
subclass of: SO_0000673
so part of: LOC101921310
location: complement(join(16026..17108,26380..27774,39029..39195,69337..69519))
location: region:16026-69519:-1
so has part: feature:69337-69519:-1:exon
so has part: feature:39029-39195:-1:exon
so has part: feature:26380-27774:-1:exon
so has part: feature:16026-17108:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:69337-69519:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:39029-39195:-1:exon

position:39029:-1
position: 39029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39195:-1
position: 39195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:26380-27774:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:16026-17108:-1:exon

LOC101921310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: LOC101921310
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein isoform X1
translation: MERLVVYLLVISTAVKAMMCPKRCMCQNLSPSFTILCTKTGLLFVPPSIDRRTAELRLMDNFITTLRRKDFANMTNLIHLTLSRNTISQIMPYAFFDLKGLHALHLDSNRLTYINEDHFKGLINLRHLILSNNQLNYISPGSLDDFIETIEDLDLSYNNLVNVPWETIAKLSNVNTVSLDHNLIEFVPEGIFSNLHKLARLDMTSNKLKKIPPDPLFSRIPVYAKSKGSPLSSLVLSFGGNPLHCNCELVWLRRLTREDDLETCASPPELMGKYFWSIKEEEFVCEPPMITHRTPKLTATEGQSISLKCKAVGDPDPYVRWISPDGKLVSNTSRTVSYENGTLDILVTSLTDKGTFTCIASNAAGESTAPVELLVTPYPNLANSTNCDKDAEPGPSDILISAKSSFPNETKAQQEKAVVVAELTSSSALIQWPSQHHLPGIRMYQIQYNSSADDILVYRMIPAASKSFFLTDLVAGREYDLCVLAVYDDGLTSLTATRVIGCVQFTTQEEYKQCRSLHAQFLGGTMIIIIGGIIVASVLVFIFILLMKYKVYNNHHKNKTTKVNNVCSQTNGSQSGSMARSTSKLAERRESLHQECSGSSVKGKTVVDLDCEKVTPTNTTFLTTDALS
SIO_010081: LOC101921310
subclass of: SO_0000673
so part of: LOC101921310
location: complement(join(16598..17108,26380..27755))
location: region:16598-27755:-1
so has part: feature:26380-27755:-1:exon
so has part: feature:16598-17108:-1:exon

XP_055648461.1
type: Protein
SIO_000068: ncbiprotein

position:16598:-1
position: 16598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27755:-1
position: 27755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26380-27755:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:16598-17108:-1:exon

LOC101921310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: LOC101921310
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein isoform X1
translation: MERLVVYLLVISTAVKAMMCPKRCMCQNLSPSFTILCTKTGLLFVPPSIDRRTAELRLMDNFITTLRRKDFANMTNLIHLTLSRNTISQIMPYAFFDLKGLHALHLDSNRLTYINEDHFKGLINLRHLILSNNQLNYISPGSLDDFIETIEDLDLSYNNLVNVPWETIAKLSNVNTVSLDHNLIEFVPEGIFSNLHKLARLDMTSNKLKKIPPDPLFSRIPVYAKSKGSPLSSLVLSFGGNPLHCNCELVWLRRLTREDDLETCASPPELMGKYFWSIKEEEFVCEPPMITHRTPKLTATEGQSISLKCKAVGDPDPYVRWISPDGKLVSNTSRTVSYENGTLDILVTSLTDKGTFTCIASNAAGESTAPVELLVTPYPNLANSTNCDKDAEPGPSDILISAKSSFPNETKAQQEKAVVVAELTSSSALIQWPSQHHLPGIRMYQIQYNSSADDILVYRMIPAASKSFFLTDLVAGREYDLCVLAVYDDGLTSLTATRVIGCVQFTTQEEYKQCRSLHAQFLGGTMIIIIGGIIVASVLVFIFILLMKYKVYNNHHKNKTTKVNNVCSQTNGSQSGSMARSTSKLAERRESLHQECSGSSVKGKTVVDLDCEKVTPTNTTFLTTDALS
SIO_010081: LOC101921310
subclass of: SO_0000673
so part of: LOC101921310
location: complement(join(16598..17108,26380..27755))
location: region:16598-27755:-1
so has part: feature:26380-27755:-1:exon
so has part: feature:16598-17108:-1:exon

XP_055648462.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26380-27755:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:16598-17108:-1:exon

LOC101921310
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: LOC101921310
product: leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_055792488.1
SIO_010081: LOC101921310
subclass of: SO_0000673
so part of: LOC101921310
location: complement(join(16948..17058,26380..27774,69337..69519))
location: region:16948-69519:-1
so has part: feature:69337-69519:-1:exon
so has part: feature:26380-27774:-1:exon
so has part: feature:16948-17058:-1:exon

position:16948:-1
position: 16948
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69337-69519:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:26380-27774:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:16948-17058:-1:exon

position:17058:-1
position: 17058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC101921310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: LOC101921310
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein isoform X2
translation: MERLVVYLLVISTAVKAMMCPKRCMCQNLSPSFTILCTKTGLLFVPPSIDRRTAELRLMDNFITTLRRKDFANMTNLIHLTLSRNTISQIMPYAFFDLKGLHALHLDSNRLTYINEDHFKGLINLRHLILSNNQLNYISPGSLDDFIETIEDLDLSYNNLVNVPWETIAKLSNVNTVSLDHNLIEFVPEGIFSNLHKLARLDMTSNKLKKIPPDPLFSRIPVYAKSKGSPLSSLVLSFGGNPLHCNCELVWLRRLTREDDLETCASPPELMGKYFWSIKEEEFVCEPPMITHRTPKLTATEGQSISLKCKAVGDPDPYVRWISPDGKLVSNTSRTVSYENGTLDILVTSLTDKGTFTCIASNAAGESTAPVELLVTPYPNLANSTNCDKDAEPGPSDILISAKSSFPNETKAQQEKAVVVAELTSSSALIQWPSQHHLPGIRMYQIQYNSSADDILVYRT
SIO_010081: LOC101921310
subclass of: SO_0000673
so part of: LOC101921310
location: complement(join(17052..17058,26380..27755))
location: region:17052-27755:-1
so has part: feature:26380-27755:-1:exon
so has part: feature:17052-17058:-1:exon

XP_055648463.1
type: Protein
SIO_000068: ncbiprotein

position:17052:-1
position: 17052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26380-27755:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:17052-17058:-1:exon

DHX34
type: Gene
subclass of: SO_0000704
RO_0002162: 8954
gene: DHX34
note: DExH-box helicase 34; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(142732..149551)
location: region:142732-149551:-1
so has part: feature:142732-149551:-1:exon
subclass of: SO_0000010

101921653
type: Gene
SIO_000068: ncbigene

position:142732:-1
position: 142732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:149551:-1
position: 149551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:142732-149551:-1:exon

DHX34
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: DHX34
product: DExH-box helicase 34
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_055792462.1
SIO_010081: DHX34
subclass of: SO_0000673
so part of: DHX34
location: complement(join(142732..143666,143923..144046,144141..144317,144439..144696,144783..144889,145022..145124,145214..145381,145456..145689,145835..145936,146105..146298,146415..146589,146729..146946,147026..147128,147954..148223,149171..149551))
location: region:142732-149551:-1
so has part: feature:149171-149551:-1:exon
so has part: feature:147954-148223:-1:exon
so has part: feature:147026-147128:-1:exon
so has part: feature:146729-146946:-1:exon
so has part: feature:146415-146589:-1:exon
so has part: feature:146105-146298:-1:exon
so has part: feature:145835-145936:-1:exon
so has part: feature:145456-145689:-1:exon
so has part: feature:145214-145381:-1:exon
so has part: feature:145022-145124:-1:exon
so has part: feature:144783-144889:-1:exon
so has part: feature:144439-144696:-1:exon
so has part: feature:144141-144317:-1:exon
so has part: feature:143923-144046:-1:exon
so has part: feature:142732-143666:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:149171-149551:-1:exon

position:149171:-1
position: 149171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:147954-148223:-1:exon

position:147954:-1
position: 147954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:148223:-1
position: 148223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:147026-147128:-1:exon

position:147026:-1
position: 147026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:147128:-1
position: 147128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:146729-146946:-1:exon

position:146729:-1
position: 146729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:146946:-1
position: 146946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:146415-146589:-1:exon

position:146415:-1
position: 146415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:146589:-1
position: 146589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:146105-146298:-1:exon

position:146105:-1
position: 146105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:146298:-1
position: 146298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:145835-145936:-1:exon

position:145835:-1
position: 145835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:145936:-1
position: 145936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:145456-145689:-1:exon

position:145456:-1
position: 145456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:145689:-1
position: 145689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:145214-145381:-1:exon

position:145214:-1
position: 145214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:145381:-1
position: 145381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:145022-145124:-1:exon

position:145022:-1
position: 145022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:145124:-1
position: 145124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:144783-144889:-1:exon

position:144783:-1
position: 144783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:144889:-1
position: 144889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:144439-144696:-1:exon

position:144439:-1
position: 144439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:144696:-1
position: 144696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:144141-144317:-1:exon

position:144141:-1
position: 144141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:144317:-1
position: 144317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:143923-144046:-1:exon

position:143923:-1
position: 143923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:144046:-1
position: 144046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:142732-143666:-1:exon

position:143666:-1
position: 143666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DHX34
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: DHX34
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: probable ATP-dependent RNA helicase DHX34
translation: MDLVLPARHFCPIFFLLSPSPPQVGYQIRFESSRSPATSILFLTEGLLLRQAQREPRLPAYRVVIADEVHERHLHGDFLLGVLRRLLPARPDLKLVLMSATINIRLFSGYFGGAPVLQVPGRIFPISVIYQPIPKEEGSTVGKSGKAERLDPLPYLRVLQAIDHKYPPEERGDLLVFLSGVAEIGAVLEAAQPYAARTQRWIILPLHSTLSVAEQDKVFDVAPPGVRKCILATNIAETSVTIDGVRFVLDSGKVKEMSYDPQGKLQRLQEFWISRASAEQRKGRAGRTGPGVCYRLYAESDYDAFAPYPVPEIQRVALDALVLQLKSMGLGDPRTFPFLEPPPPSSLELAVRYLKDQGALDEAEDLTPIGNLLAQLPVDVVVGKMLVLGALFDLAEPTLTVAAALSVASPFLRAAHPNPDCATARRPLESPHGDPLTLLNIFNQWVQVKSERGGSSRKWCRRRGLEEHRLYEAANLRRQFQELLRDHQLVEETSSQPSDSYSRQSRHRERRELHRLWRSHAETEGRKRKVLRLQDGAGASSGEEEEDGGTRGKHSVDIQDVKFKLRHDVAELQAASSSTLSCSQLALLKLVLCRGLYPQLAVPDALNSGRKDSDQIFHTKSKQGVVLHPTCVFATSPELLHAKEGAGTKDPTEGLSCHHQLLAFVSLLETTKPYLVNCVRVPALHTLLLFSRSLDTNADCTRLVADGWLELTVPDADTALRLLSTALQLRSSWEKLLHQLLEGREEESGRRPSSRDVSALSRGLREFLRMEVPHRLRQLTGLEKQNLYIGPQTVAAAPRLPGLFQGMEMKPDEVKGGHRVTEFLTYNCLATDTDLYSDCLRSFWTCPHCDLHMPFTPLERMCHESACRPSEAPSEEAAESSSKPSALQRPYHCDVCQQDFTFTPTEILRHKKQHR
SIO_010081: DHX34
subclass of: SO_0000673
so part of: DHX34
location: complement(join(143533..143666,143923..144046,144141..144317,144439..144696,144783..144889,145022..145124,145214..145381,145456..145689,145835..145936,146105..146298,146415..146589,146729..146946,147026..147128,147954..148223,149171..149551))
location: region:143533-149551:-1
so has part: feature:149171-149551:-1:exon
so has part: feature:147954-148223:-1:exon
so has part: feature:147026-147128:-1:exon
so has part: feature:146729-146946:-1:exon
so has part: feature:146415-146589:-1:exon
so has part: feature:146105-146298:-1:exon
so has part: feature:145835-145936:-1:exon
so has part: feature:145456-145689:-1:exon
so has part: feature:145214-145381:-1:exon
so has part: feature:145022-145124:-1:exon
so has part: feature:144783-144889:-1:exon
so has part: feature:144439-144696:-1:exon
so has part: feature:144141-144317:-1:exon
so has part: feature:143923-144046:-1:exon
so has part: feature:143533-143666:-1:exon

XP_055648437.1
type: Protein
SIO_000068: ncbiprotein

position:143533:-1
position: 143533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:149171-149551:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:147954-148223:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:147026-147128:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:146729-146946:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:146415-146589:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:146105-146298:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:145835-145936:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:145456-145689:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:145214-145381:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:145022-145124:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:144783-144889:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:144439-144696:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:144141-144317:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:143923-144046:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:143533-143666:-1:exon

BICRA
type: Gene
subclass of: SO_0000704
RO_0002162: 8954
gene: BICRA
note: BRD4 interacting chromatin remodeling complex associated protein; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(<152282..176268)
location: region:152282-176268:-1
so has part: feature:152282-176268:-1:exon
subclass of: SO_0000010

101919342
type: Gene
SIO_000068: ncbigene

position:152282:-1
position: 152282
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:176268:-1
position: 176268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:152282-176268:-1:exon

BICRA
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: BICRA
product: BRD4 interacting chromatin remodeling complex associated protein
inference: similar to RNA sequence, mRNA (same species):INSD:ICSV01023028.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 9 bases in 8 codons; added 236 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_055792485.1
SIO_010081: BICRA
subclass of: SO_0000673
so part of: BICRA
location: complement(join(<152282..152384,152506..152601,153626..153775,153914..153972,154260..154385,154816..154943,157587..157771,161564..163503,164914..164980,165368..165410,166174..166219,173835..173910,174900..176268))
location: region:152282-176268:-1
so has part: feature:174900-176268:-1:exon
so has part: feature:173835-173910:-1:exon
so has part: feature:166174-166219:-1:exon
so has part: feature:165368-165410:-1:exon
so has part: feature:164914-164980:-1:exon
so has part: feature:161564-163503:-1:exon
so has part: feature:157587-157771:-1:exon
so has part: feature:154816-154943:-1:exon
so has part: feature:154260-154385:-1:exon
so has part: feature:153914-153972:-1:exon
so has part: feature:153626-153775:-1:exon
so has part: feature:152506-152601:-1:exon
so has part: feature:152282-152384:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:174900-176268:-1:exon

position:174900:-1
position: 174900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:173835-173910:-1:exon

position:173835:-1
position: 173835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:173910:-1
position: 173910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:166174-166219:-1:exon

position:166174:-1
position: 166174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:166219:-1
position: 166219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:165368-165410:-1:exon

position:165368:-1
position: 165368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:165410:-1
position: 165410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:164914-164980:-1:exon

position:164914:-1
position: 164914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:164980:-1
position: 164980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:161564-163503:-1:exon

position:161564:-1
position: 161564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:163503:-1
position: 163503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:157587-157771:-1:exon

position:157587:-1
position: 157587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:157771:-1
position: 157771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:154816-154943:-1:exon

position:154816:-1
position: 154816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:154943:-1
position: 154943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:154260-154385:-1:exon

position:154260:-1
position: 154260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:154385:-1
position: 154385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:153914-153972:-1:exon

position:153914:-1
position: 153914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:153972:-1
position: 153972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:153626-153775:-1:exon

position:153626:-1
position: 153626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:153775:-1
position: 153775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:152506-152601:-1:exon

position:152506:-1
position: 152506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:152601:-1
position: 152601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:152282-152384:-1:exon

position:152384:-1
position: 152384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

BICRA
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: BICRA
inference: similar to RNA sequence, mRNA (same species):INSD:ICSV01023028.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 9 bases in 8 codons; added 236 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: BRD4-interacting chromatin-remodeling complex-associated protein
translation: METANKRRRLASAVESNFPGKEDYDCIKQICSVSPLLPIVGTELLKARVDMDDEDGRCLLDVICDPQALNDFLHGSEKIDSDDLLDNTGDAASAFFEGAGLHVQEASGNHLSAEPSQPPTSVDLDFLEDDILGSPAGGGANLQNSEQPCDILQQSLQEANITEQTLEAEAELDLGSFQLPTLQPVVQAASDGTPQIFPGGADLIGLQPPAVLTHQALVQQSVGADVVNKAISVQPFLQQVGLGNVTIQPISNLQGLPNGSPSGTLGIGPIQVVGQQVMAINQPAQQIIAKQVQPSQVATMPVGSYITQTAPEQQQVTLASAGVSPQSAGLVIQKNLPAVATTTLNGNSMFGGVAGTQGSQPLTVTSNLSSPLVQAQNVIIHRTPTPIQPKPAGVLQQKLYQITPKPFASNNATLTIQNEAALQQQKAQQNLTFMAGKAGQNVVLSGFPQGLPANVFKQPPPQQQALSKPMSVHLLNQGSSIVIPAQHVPQAMLQGQNQFLLPGQLAGASAVQIPQQLSALQANMGGQILTTSHPGGQAHIITSQGPGGQLITNQILTNQNIAGQLNLGQVLTSQNAHGTAHILSAPIQLQPGQVGQPALFQMPVSLAGSLTTQSQPSVAASLGQTGQTVIQGVTLPNQVAMLNAPENLGQAVSIQASAATSSQSPGLGQPQPLPSADQSSILTVQTASQPPAPLQLNVPPPPPPQQPVTSQASPGLASSPEKIILGQAAAGAVINQDSMQMFLQQVPQGIILQTKQQPPSSQAPPALAQFTGPSSSVLVGSQGQTVTVTTATAASHAPTALPPSTTGITAPVPAESKTFSSVSAPISTGKGAAAPGKSGATLPIQQPLQTKPGVISSVSGLNLGKGPVPIPVVGKGLPQLVPSVPVPGQPLYDGKLGLKKTPTLQPSKEACFLEQLHKHQGAVLHPDYKTSFRSFDDALRRLLPYHVYQGMLPSARDYQKVDEEFEAVSTQLLRRTQAMLNKYRLLLLEESRRVSPSAEMVMIDRMFIQEEKTTLALDKQLAKEKPDEYVSSSRSHNLSSSSSSSSSSSSAPSASISIATGGQMNGTVDHVASVAVEKKPAATYCRLPLRKTYRQHLDADKPADA
SIO_010081: BICRA
subclass of: SO_0000673
so part of: BICRA
location: complement(join(<152282..152384,152506..152601,153626..153775,153914..153972,154260..154385,154816..154943,157587..157771,161564..163503,164914..164980,165368..165410,166174..166219,173835..173910,174900..174968))
location: region:152282-174968:-1
so has part: feature:174900-174968:-1:exon
so has part: feature:173835-173910:-1:exon
so has part: feature:166174-166219:-1:exon
so has part: feature:165368-165410:-1:exon
so has part: feature:164914-164980:-1:exon
so has part: feature:161564-163503:-1:exon
so has part: feature:157587-157771:-1:exon
so has part: feature:154816-154943:-1:exon
so has part: feature:154260-154385:-1:exon
so has part: feature:153914-153972:-1:exon
so has part: feature:153626-153775:-1:exon
so has part: feature:152506-152601:-1:exon
so has part: feature:152282-152384:-1:exon

XP_055648460.1
type: Protein
SIO_000068: ncbiprotein

position:174968:-1
position: 174968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:174900-174968:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:173835-173910:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:166174-166219:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:165368-165410:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:164914-164980:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:161564-163503:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:157587-157771:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:154816-154943:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:154260-154385:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:153914-153972:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:153626-153775:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:152506-152601:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:152282-152384:-1:exon

LOC114014179
type: Gene
subclass of: SO_0000704
RO_0002162: 8954
gene: LOC114014179
note: uncharacterized LOC114014179; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(183120..187216)
location: region:183120-187216:-1
so has part: feature:183120-187216:-1:exon
subclass of: SO_0000011

114014179
type: Gene
SIO_000068: ncbigene

position:183120:-1
position: 183120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:187216:-1
position: 187216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:183120-187216:-1:exon

LOC114014179
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 8954
nc RNA class: lncRNA
gene: LOC114014179
product: uncharacterized LOC114014179
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_008745029.1
SIO_010081: LOC114014179
subclass of: SO_0000673
so part of: LOC114014179
location: complement(join(183120..183380,184029..184203,185062..185165,186760..186804,187168..187216))
location: region:183120-187216:-1
so has part: feature:187168-187216:-1:exon
so has part: feature:186760-186804:-1:exon
so has part: feature:185062-185165:-1:exon
so has part: feature:184029-184203:-1:exon
so has part: feature:183120-183380:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:187168-187216:-1:exon

position:187168:-1
position: 187168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:186760-186804:-1:exon

position:186760:-1
position: 186760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:186804:-1
position: 186804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:185062-185165:-1:exon

position:185062:-1
position: 185062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:185165:-1
position: 185165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:184029-184203:-1:exon

position:184029:-1
position: 184029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:184203:-1
position: 184203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:183120-183380:-1:exon

position:183380:-1
position: 183380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ZNF541
type: Gene
subclass of: SO_0000704
RO_0002162: 8954
gene: ZNF541
note: zinc finger protein 541; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 189352..201498
location: region:189352-201498:1
so has part: feature:189352-201498:1:exon
subclass of: SO_0000010

101919518
type: Gene
SIO_000068: ncbigene

position:189352:1
position: 189352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:201498:1
position: 201498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189352-201498:1:exon

ZNF541
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: ZNF541
product: zinc finger protein 541
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_055792463.1
SIO_010081: ZNF541
subclass of: SO_0000673
so part of: ZNF541
location: join(189352..189836,190768..191058,191661..192981,193491..193549,194953..195112,195659..195820,196445..196767,197436..197499,197965..198107,198348..198451,199010..199085,199450..199538,200802..200980,201348..201498)
location: region:189352-201498:1
so has part: feature:189352-189836:1:exon
so has part: feature:190768-191058:1:exon
so has part: feature:191661-192981:1:exon
so has part: feature:193491-193549:1:exon
so has part: feature:194953-195112:1:exon
so has part: feature:195659-195820:1:exon
so has part: feature:196445-196767:1:exon
so has part: feature:197436-197499:1:exon
so has part: feature:197965-198107:1:exon
so has part: feature:198348-198451:1:exon
so has part: feature:199010-199085:1:exon
so has part: feature:199450-199538:1:exon
so has part: feature:200802-200980:1:exon
so has part: feature:201348-201498:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:189352-189836:1:exon

position:189836:1
position: 189836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:190768-191058:1:exon

position:190768:1
position: 190768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:191058:1
position: 191058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:191661-192981:1:exon

position:191661:1
position: 191661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:192981:1
position: 192981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:193491-193549:1:exon

position:193491:1
position: 193491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:193549:1
position: 193549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:194953-195112:1:exon

position:194953:1
position: 194953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:195112:1
position: 195112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:195659-195820:1:exon

position:195659:1
position: 195659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:195820:1
position: 195820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:196445-196767:1:exon

position:196445:1
position: 196445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:196767:1
position: 196767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:197436-197499:1:exon

position:197436:1
position: 197436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:197499:1
position: 197499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:197965-198107:1:exon

position:197965:1
position: 197965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:198107:1
position: 198107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:198348-198451:1:exon

position:198348:1
position: 198348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:198451:1
position: 198451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:199010-199085:1:exon

position:199010:1
position: 199010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:199085:1
position: 199085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:199450-199538:1:exon

position:199450:1
position: 199450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:199538:1
position: 199538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:200802-200980:1:exon

position:200802:1
position: 200802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:200980:1
position: 200980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:201348-201498:1:exon

position:201348:1
position: 201348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ZNF541
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: ZNF541
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: zinc finger protein 541
translation: MDQYPFDDENGIHLEMHLPGFPESQELLCSEALDCNLCPTAKGVSYAGLSSLDADAAGDALEAELNVFSLYLAKDCGSGQLQGSDWQPWQQGECAALRVLASFQGSLAGGSGWGYLGAACGRGAEGSFSEKCVIAKVNKAAVAFSLLSEPELPALAGPEEAGGGGSGSAGSGEPPLGSQSSPLGCSRCGKVFGSASALSKHCLSHSQERLHVCAVCSKAFKRPDHLSGHMLTHQKKTPFICPEPDCEKSYCNPHSLRRHYGLRHSCREAPAGEEPSLLPAPGSQGGGKSAEGRLPCSESGPFPPESDLLRDIVSQNCPVGAFPSAEHADAASPGPSRASRLTSDGSGLAEDDFSRDCSSCQRDAASSSVTNPTEVPVVAPWENMAIDLTTVSFISEPAGLQPCPDSTLPCFPAPRKPENRSSDNFECMRNVPVCAKSERNSVCLACEPPAAADERPDASPVPAAPLKAKEDALSEPALGCFEEIFQSAEPHASCPLENAEEPSFPEVSKRDEGGQLFPKPPEPAACPGPLQMPQQHLFQAIADSPLAPSPPAAPGAACLAANLLRQPRPAFASQRPQPTGYQGLSTHLRQAVPCSHQPENELSTLKKEKSNDGSAETARKAPARTGWSWRPPASRREKLAAPSQVAMASFPAAPVPRRLTIFNRIQGGNIYTLTHAAEGARSPAGRDSTGAAPVDGSGCESDVLCRSCLRPRSTGKGLESHGRFGGERWHSAQGKEEQQVCHAGGASHLWLPAAGDGNQPSKPWMPSGNVPVAPLVIPVSVPVSATSSPAGNEVSGKDGVDGKDPGANLHHQMKLLRPKSLFIPPPAAPRRPAGAGRCYRSTLRSPTILVDHLLRDLLQRSPYTPPPMLSPLREGSGLYFSTLCSSSARGDPGRLLSTVLGGASGDLGLCLMNETTKVSVQPHINIGSQFQAEIPELRCGSSLEEDGEAGLLVWKPWGDIATNPATQDRVTELLHVACSSAVPGGGMNLELALHCLHEAQSNVLEALEMLLFGVPQKSGSHPLADYHYTGSAAWSSLEKDLFEEALAAHGKDFHLIQKKVVWNPQRLCLLWKEDGKMKRKREKKMPRDAGSTSHRRDEAQCQAGSADNQSMFPCSLCGRVFEKIKGRNAHMKKHRPQVKPPEDEMVPEASGSGVEAGQDPKAAGCFCY
SIO_010081: ZNF541
subclass of: SO_0000673
so part of: ZNF541
location: join(189451..189836,190768..191058,191661..192981,193491..193549,194953..195112,195659..195820,196445..196767,197436..197499,197965..198107,198348..198451,199010..199085,199450..199538,200802..200980,201348..201498)
location: region:189451-201498:1
so has part: feature:189451-189836:1:exon
so has part: feature:190768-191058:1:exon
so has part: feature:191661-192981:1:exon
so has part: feature:193491-193549:1:exon
so has part: feature:194953-195112:1:exon
so has part: feature:195659-195820:1:exon
so has part: feature:196445-196767:1:exon
so has part: feature:197436-197499:1:exon
so has part: feature:197965-198107:1:exon
so has part: feature:198348-198451:1:exon
so has part: feature:199010-199085:1:exon
so has part: feature:199450-199538:1:exon
so has part: feature:200802-200980:1:exon
so has part: feature:201348-201498:1:exon

XP_055648438.1
type: Protein
SIO_000068: ncbiprotein

position:189451:1
position: 189451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189451-189836:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:190768-191058:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:191661-192981:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:193491-193549:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:194953-195112:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:195659-195820:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:196445-196767:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:197436-197499:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:197965-198107:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:198348-198451:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:199010-199085:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:199450-199538:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:200802-200980:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:201348-201498:1:exon

LOC106112957
type: Gene
subclass of: SO_0000704
RO_0002162: 8954
gene: LOC106112957
note: E3 SUMO-protein ligase ZBED1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(200994..>204609)
location: region:200994-204609:-1
so has part: feature:200994-204609:-1:exon
subclass of: SO_0000010

106112957
type: Gene
SIO_000068: ncbigene

position:200994:-1
position: 200994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:204609:-1
position: 204609
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:200994-204609:-1:exon

LOC106112957
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: LOC106112957
product: E3 SUMO-protein ligase ZBED1-like
inference: similar to RNA sequence, mRNA (same species):INSD:ICSV01006587.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 224 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XM_055792484.1
SIO_010081: LOC106112957
subclass of: SO_0000673
so part of: LOC106112957
location: complement(200994..>204609)
location: region:200994-204609:-1
so has part: feature:200994-204609:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:200994-204609:-1:exon

LOC106112957
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: LOC106112957
inference: similar to RNA sequence, mRNA (same species):INSD:ICSV01006587.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 84 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 SUMO-protein ligase ZBED1-like
translation: MREHLVRKHSIRDTLLSQLRDDQSAESDSSAQENAGKRSRQMTPPENVYHAAPCSDPRSDIILELLLEMIFRDLHPLSVVKDKGFGLLVGYLEPNFALPVPAQLASMLRHRYTVMKRQLERYLQPAQAVVLCVELWPSLLGPLYRSVSACFIDGEWRRARCALETRPAPEGEGEAGEGLCAVLSKFGASGKAVFCVMRDAAADAAQPQGWSGLCCAARTLHRCVAAGLEVEQVREALGAARGIVRYFQQDAKATGSLNGKLEATKRTRLSLALDAEARWLSTAEMCESLLELKWAVMAVLEEHPEGAAAAPRLADGQWKLLQDLVGVLRTVRIAVAFLREEQNASISSLLPCVHGVAAAIGQQAEEAGTGAVIRTVVGNIRAELRRCWGSAEDEKVLENPAVIASFLDPRFKELRFLSPALRNELHQRVKTILSQISNPQAPAGGRFWTLCWDYKAEGGEGNSQPPAPKEQSASAAPQSPYDILLGKDPTESMPEIHQQLENYIVEPLCKRSTNPLDWWKNNEHRFPAVARLSRHFLAIPATATPPEQAFATGESALQHRRAGLAPENLDQILFLHQNFDFLDVVRRGNDPRHRALR
SIO_010081: LOC106112957
subclass of: SO_0000673
so part of: LOC106112957
location: complement(202900..>204609)
location: region:202900-204609:-1
so has part: feature:202900-204609:-1:exon

XP_055648459.1
type: Protein
SIO_000068: ncbiprotein

position:202900:-1
position: 202900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:202900-204609:-1:exon

LOC129782929
type: Gene
subclass of: SO_0000704
RO_0002162: 8954
gene: LOC129782929
note: leucine-rich repeat and fibronectin type III domain-containing protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 205893..210594
location: region:205893-210594:1
so has part: feature:205893-210594:1:exon
subclass of: SO_0000010

129782929
type: Gene
SIO_000068: ncbigene

position:205893:1
position: 205893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210594:1
position: 210594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:205893-210594:1:exon

LOC129782929
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: LOC129782929
product: leucine-rich repeat and fibronectin type III domain-containing protein 1-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 10 bases in 9 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_055792492.1
SIO_010081: LOC129782929
subclass of: SO_0000673
so part of: LOC129782929
location: join(205893..205932,207233..208586,209946..210594)
location: region:205893-210594:1
so has part: feature:205893-205932:1:exon
so has part: feature:207233-208586:1:exon
so has part: feature:209946-210594:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:205893-205932:1:exon

position:205932:1
position: 205932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:207233-208586:1:exon

position:207233:1
position: 207233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:208586:1
position: 208586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:209946-210594:1:exon

position:209946:1
position: 209946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC129782929
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: LOC129782929
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 10 bases in 9 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: leucine-rich repeat and fibronectin type III domain-containing protein 1-like
translation: MAKLLVPLVMLGAVAGSHRCPPRCLCPAAAPNPTLLCARTGLLAVPPSLDRGAVELRLADNFIGAVGRADFANMSSLVHLTLSRNGLRRLAPGAFADLRALRALHLDGNRLPALSGAQLRGLASLRHLILANNQLAAIEPAAFAAFAATVEDLDLSHNNLPALPWEAVAGMASLATLTLDHNLLERVPAGAVARLPRLARLDLTANRLRALPPVPGPPGPSLAAGGNPLHCNCELLWLRRLAQPGRLESCASPPPLAGSLFGAVPEEELACRAPAIAGAAADPAAVLEGQPLRLGCAAAGDPPPALHWLGPDGRLVQNGSQRAVGPDGSLELRVATLGDHGAFTCVASNAAGEAAARVQVAVFPLPVAREDGDGDGETAAGPSDMARAGGNETWVPGERRVVAAELTATSARIRWLPQRHVPGIRMFQVTYNSSLDDSLVYRLLPPSSRSFVLRDLAAGRHYQLCVTALHAEGVPAAPTARGLGCVRFATPGGAPGCAALPRPHFLGGTVIIVIGAAIAASVLVFILILTARYKAAARPPAPAAVASVCSQTNGAHRSPEPAPPPLPAPAPMGATGGGGAXGLFPSHSYPRRARTRRHGSLPRLDLPEGTPPLRPSFGSTHWMLESTV
SIO_010081: LOC129782929
subclass of: SO_0000673
so part of: LOC129782929
location: join(207255..208586,209946..210509)
location: region:207255-210509:1
so has part: feature:207255-208586:1:exon
so has part: feature:209946-210509:1:exon

XP_055648467.1
type: Protein
SIO_000068: ncbiprotein

position:207255:1
position: 207255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210509:1
position: 210509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:207255-208586:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:209946-210509:1:exon

SYCN
type: Gene
subclass of: SO_0000704
RO_0002162: 8954
gene: SYCN
note: syncollin; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 211521..215415
location: region:211521-215415:1
so has part: feature:211521-215415:1:exon
subclass of: SO_0000010

129782923
type: Gene
SIO_000068: ncbigene

position:211521:1
position: 211521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:215415:1
position: 215415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:211521-215415:1:exon

SYCN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: SYCN
product: syncollin
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
transcript id: XM_055792464.1
SIO_010081: SYCN
subclass of: SO_0000673
so part of: SYCN
location: join(211521..211577,213882..215415)
location: region:211521-215415:1
so has part: feature:211521-211577:1:exon
so has part: feature:213882-215415:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:211521-211577:1:exon

position:211577:1
position: 211577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:213882-215415:1:exon

position:213882:1
position: 213882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SYCN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: SYCN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: syncollin
translation: MGAPPGPPRAPVCSPLPPSAAPGAAAGGVGDGGAGGGALVAAVLAGAEAQCPSPSDLRTANGTRICAQLYADNSPYYDQCCAGPVLVVEPGADVPYMPRGWAGHVSSLVVGTRCELTVWSRAGKKGKMRRFGAGAVPRLQEVRRGLFGDWDNAIRGYYCSCK
SIO_010081: SYCN
subclass of: SO_0000673
so part of: SYCN
location: join(211521..211577,213882..214313)
location: region:211521-214313:1
so has part: feature:211521-211577:1:exon
so has part: feature:213882-214313:1:exon

XP_055648439.1
type: Protein
SIO_000068: ncbiprotein

position:214313:1
position: 214313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:211521-211577:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:213882-214313:1:exon

PAK4
type: Gene
subclass of: SO_0000704
RO_0002162: 8954
gene: PAK4
note: p21 (RAC1) activated kinase 4; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(215524..239078)
location: region:215524-239078:-1
so has part: feature:215524-239078:-1:exon
subclass of: SO_0000010

101921802
type: Gene
SIO_000068: ncbigene

position:215524:-1
position: 215524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:239078:-1
position: 239078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215524-239078:-1:exon

PAK4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: PAK4
product: p21 (RAC1) activated kinase 4, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_055792474.1
SIO_010081: PAK4
subclass of: SO_0000673
so part of: PAK4
location: complement(join(215524..216381,216458..216592,216688..216813,216894..217020,217105..217238,217343..217786,218216..218905,220511..220734,227277..228584,238056..238120,238931..239078))
location: region:215524-239078:-1
so has part: feature:238931-239078:-1:exon
so has part: feature:238056-238120:-1:exon
so has part: feature:227277-228584:-1:exon
so has part: feature:220511-220734:-1:exon
so has part: feature:218216-218905:-1:exon
so has part: feature:217343-217786:-1:exon
so has part: feature:217105-217238:-1:exon
so has part: feature:216894-217020:-1:exon
so has part: feature:216688-216813:-1:exon
so has part: feature:216458-216592:-1:exon
so has part: feature:215524-216381:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:238931-239078:-1:exon

position:238931:-1
position: 238931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:238056-238120:-1:exon

position:238056:-1
position: 238056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:238120:-1
position: 238120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:227277-228584:-1:exon

position:227277:-1
position: 227277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:228584:-1
position: 228584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:220511-220734:-1:exon

position:220511:-1
position: 220511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:220734:-1
position: 220734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:218216-218905:-1:exon

position:218216:-1
position: 218216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:218905:-1
position: 218905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:217343-217786:-1:exon

position:217343:-1
position: 217343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217786:-1
position: 217786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:217105-217238:-1:exon

position:217105:-1
position: 217105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217238:-1
position: 217238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:216894-217020:-1:exon

position:216894:-1
position: 216894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217020:-1
position: 217020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:216688-216813:-1:exon

position:216688:-1
position: 216688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:216813:-1
position: 216813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:216458-216592:-1:exon

position:216458:-1
position: 216458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:216592:-1
position: 216592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:215524-216381:-1:exon

position:216381:-1
position: 216381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PAK4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: PAK4
product: p21 (RAC1) activated kinase 4, transcript variant X3
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_055792476.1
SIO_010081: PAK4
subclass of: SO_0000673
so part of: PAK4
location: complement(join(215524..216381,216458..216592,216688..216813,216894..217020,217105..217238,217343..217786,218216..218905,220511..220734,238056..238120,238931..239077))
location: region:215524-239077:-1
so has part: feature:238931-239077:-1:exon
so has part: feature:238056-238120:-1:exon
so has part: feature:220511-220734:-1:exon
so has part: feature:218216-218905:-1:exon
so has part: feature:217343-217786:-1:exon
so has part: feature:217105-217238:-1:exon
so has part: feature:216894-217020:-1:exon
so has part: feature:216688-216813:-1:exon
so has part: feature:216458-216592:-1:exon
so has part: feature:215524-216381:-1:exon

position:239077:-1
position: 239077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:238931-239077:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:238056-238120:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:220511-220734:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:218216-218905:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:217343-217786:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:217105-217238:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:216894-217020:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:216688-216813:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:216458-216592:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:215524-216381:-1:exon

PAK4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: PAK4
product: p21 (RAC1) activated kinase 4, transcript variant X4
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_055792477.1
SIO_010081: PAK4
subclass of: SO_0000673
so part of: PAK4
location: complement(join(215524..216381,216458..216592,216688..216813,216894..217020,217105..217238,217343..217786,218216..218905,220511..220734,238056..238120,238909..239077))
location: region:215524-239077:-1
so has part: feature:238909-239077:-1:exon
so has part: feature:238056-238120:-1:exon
so has part: feature:220511-220734:-1:exon
so has part: feature:218216-218905:-1:exon
so has part: feature:217343-217786:-1:exon
so has part: feature:217105-217238:-1:exon
so has part: feature:216894-217020:-1:exon
so has part: feature:216688-216813:-1:exon
so has part: feature:216458-216592:-1:exon
so has part: feature:215524-216381:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:238909-239077:-1:exon

position:238909:-1
position: 238909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:238056-238120:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:220511-220734:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:218216-218905:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:217343-217786:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:217105-217238:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:216894-217020:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:216688-216813:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:216458-216592:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:215524-216381:-1:exon

PAK4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: PAK4
product: p21 (RAC1) activated kinase 4, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_055792475.1
SIO_010081: PAK4
subclass of: SO_0000673
so part of: PAK4
location: complement(join(215524..216381,216458..216592,216688..216813,216894..217020,217105..217238,217343..217786,218222..218905,220511..220734,227277..228584,238056..238120,238909..239076))
location: region:215524-239076:-1
so has part: feature:238909-239076:-1:exon
so has part: feature:238056-238120:-1:exon
so has part: feature:227277-228584:-1:exon
so has part: feature:220511-220734:-1:exon
so has part: feature:218222-218905:-1:exon
so has part: feature:217343-217786:-1:exon
so has part: feature:217105-217238:-1:exon
so has part: feature:216894-217020:-1:exon
so has part: feature:216688-216813:-1:exon
so has part: feature:216458-216592:-1:exon
so has part: feature:215524-216381:-1:exon

position:239076:-1
position: 239076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:238909-239076:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:238056-238120:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:227277-228584:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:220511-220734:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:218222-218905:-1:exon

position:218222:-1
position: 218222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:217343-217786:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:217105-217238:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:216894-217020:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:216688-216813:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:216458-216592:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:215524-216381:-1:exon

PAK4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: PAK4
product: p21 (RAC1) activated kinase 4, transcript variant X5
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_055792478.1
SIO_010081: PAK4
subclass of: SO_0000673
so part of: PAK4
location: complement(join(215524..216381,216458..216592,216688..216813,216894..217020,217105..217238,217343..217786,218216..218905,220511..220734,226442..227259))
location: region:215524-227259:-1
so has part: feature:226442-227259:-1:exon
so has part: feature:220511-220734:-1:exon
so has part: feature:218216-218905:-1:exon
so has part: feature:217343-217786:-1:exon
so has part: feature:217105-217238:-1:exon
so has part: feature:216894-217020:-1:exon
so has part: feature:216688-216813:-1:exon
so has part: feature:216458-216592:-1:exon
so has part: feature:215524-216381:-1:exon

position:227259:-1
position: 227259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:226442-227259:-1:exon

position:226442:-1
position: 226442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:220511-220734:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:218216-218905:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:217343-217786:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:217105-217238:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:216894-217020:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:216688-216813:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:216458-216592:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:215524-216381:-1:exon

PAK4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: PAK4
product: p21 (RAC1) activated kinase 4, transcript variant X9
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_055792483.1
SIO_010081: PAK4
subclass of: SO_0000673
so part of: PAK4
location: complement(join(215524..216381,216458..216592,216688..216813,216894..217020,217105..217238,217343..217786,218216..218905,220511..220734,221251..222985,223112..224962,226442..227259))
location: region:215524-227259:-1
so has part: feature:226442-227259:-1:exon
so has part: feature:223112-224962:-1:exon
so has part: feature:221251-222985:-1:exon
so has part: feature:220511-220734:-1:exon
so has part: feature:218216-218905:-1:exon
so has part: feature:217343-217786:-1:exon
so has part: feature:217105-217238:-1:exon
so has part: feature:216894-217020:-1:exon
so has part: feature:216688-216813:-1:exon
so has part: feature:216458-216592:-1:exon
so has part: feature:215524-216381:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:226442-227259:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:223112-224962:-1:exon

position:223112:-1
position: 223112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:224962:-1
position: 224962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:221251-222985:-1:exon

position:221251:-1
position: 221251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:222985:-1
position: 222985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:220511-220734:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:218216-218905:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:217343-217786:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:217105-217238:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:216894-217020:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:216688-216813:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:216458-216592:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:215524-216381:-1:exon

PAK4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: PAK4
product: p21 (RAC1) activated kinase 4, transcript variant X8
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_055792481.1
SIO_010081: PAK4
subclass of: SO_0000673
so part of: PAK4
location: complement(join(215524..216381,216458..216592,216688..216813,216894..217020,217105..217238,217343..217786,218216..218905,220511..220734,223112..226428))
location: region:215524-226428:-1
so has part: feature:223112-226428:-1:exon
so has part: feature:220511-220734:-1:exon
so has part: feature:218216-218905:-1:exon
so has part: feature:217343-217786:-1:exon
so has part: feature:217105-217238:-1:exon
so has part: feature:216894-217020:-1:exon
so has part: feature:216688-216813:-1:exon
so has part: feature:216458-216592:-1:exon
so has part: feature:215524-216381:-1:exon

position:226428:-1
position: 226428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:223112-226428:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:220511-220734:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:218216-218905:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:217343-217786:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:217105-217238:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:216894-217020:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:216688-216813:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:216458-216592:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:215524-216381:-1:exon

PAK4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: PAK4
product: p21 (RAC1) activated kinase 4, transcript variant X7
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_055792480.1
SIO_010081: PAK4
subclass of: SO_0000673
so part of: PAK4
location: complement(join(215524..216381,216458..216592,216688..216813,216894..217020,217105..217238,217343..217786,218216..218905,220511..220734,221251..222985,223112..226428))
location: region:215524-226428:-1
so has part: feature:223112-226428:-1:exon
so has part: feature:221251-222985:-1:exon
so has part: feature:220511-220734:-1:exon
so has part: feature:218216-218905:-1:exon
so has part: feature:217343-217786:-1:exon
so has part: feature:217105-217238:-1:exon
so has part: feature:216894-217020:-1:exon
so has part: feature:216688-216813:-1:exon
so has part: feature:216458-216592:-1:exon
so has part: feature:215524-216381:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:223112-226428:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:221251-222985:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:220511-220734:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:218216-218905:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:217343-217786:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:217105-217238:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:216894-217020:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:216688-216813:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:216458-216592:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:215524-216381:-1:exon

PAK4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: PAK4
product: p21 (RAC1) activated kinase 4, transcript variant X6
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_055792479.1
SIO_010081: PAK4
subclass of: SO_0000673
so part of: PAK4
location: complement(join(215524..216381,216458..216592,216688..216813,216894..217020,217105..217238,217343..217786,218216..218905,220511..220734,221255..223099))
location: region:215524-223099:-1
so has part: feature:221255-223099:-1:exon
so has part: feature:220511-220734:-1:exon
so has part: feature:218216-218905:-1:exon
so has part: feature:217343-217786:-1:exon
so has part: feature:217105-217238:-1:exon
so has part: feature:216894-217020:-1:exon
so has part: feature:216688-216813:-1:exon
so has part: feature:216458-216592:-1:exon
so has part: feature:215524-216381:-1:exon

position:223099:-1
position: 223099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:221255-223099:-1:exon

position:221255:-1
position: 221255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:220511-220734:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:218216-218905:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:217343-217786:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:217105-217238:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:216894-217020:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:216688-216813:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:216458-216592:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:215524-216381:-1:exon

PAK4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: PAK4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase PAK 4 isoform X2
translation: MLLPHWFPAQISSIPSCFSQASSLTPPSLAAAVSSRGYSCLRTLLTDYRPGSVGESSTLPGLENGLVAGLTMFSKKKKRIEISAPSNFEHRVHTGYDQQEQKFTGLPRQWQGIIEESAKRPKPLVDPVCITAIQHGSQKTIVRGSKAAKDGSLTWLLDEFENMSVSRSNSLRRDSPPFPPRRDQLYQENGLSEGPAAARPHEDAGRSKEKSRHGARSELEQGKEKPREREEQRAHHHHHQQQPRGQEPGPKPAPPASGRPPPPEYPKTPAERDGWRDYPADRDYSEPADRVVRRERPEPSDKRPKSTYTAETSPQSPRDKRPLSGPNIRTPNIPVSEGVMKTAQQTGRPFNTYPRAETDPGRGAGSQAEHRPGRPQEVASNGPVSGSASSSRAHPTGPPRSKNPEPPHPGLTPHASDPHLSRQPPPGPPPAPVGPQQPRSPQREPQRVSHEQFRAALQMVVDPGDPRTYLDNFIKIGEGSTGIVCIATVKSTGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVNKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGVMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNVHKVSPSLKGFLDRMLVRDPVQRATANELLKHPFLGKAGPPSCIVPLMRQNRMR
SIO_010081: PAK4
subclass of: SO_0000673
so part of: PAK4
location: complement(join(216226..216381,216458..216592,216688..216813,216894..217020,217105..217238,217343..217786,218222..218905,220511..220734,227277..227469))
location: region:216226-227469:-1
so has part: feature:227277-227469:-1:exon
so has part: feature:220511-220734:-1:exon
so has part: feature:218222-218905:-1:exon
so has part: feature:217343-217786:-1:exon
so has part: feature:217105-217238:-1:exon
so has part: feature:216894-217020:-1:exon
so has part: feature:216688-216813:-1:exon
so has part: feature:216458-216592:-1:exon
so has part: feature:216226-216381:-1:exon

XP_055648450.1
type: Protein
SIO_000068: ncbiprotein

position:216226:-1
position: 216226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:227469:-1
position: 227469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:227277-227469:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:220511-220734:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:218222-218905:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:217343-217786:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:217105-217238:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:216894-217020:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:216688-216813:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:216458-216592:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:216226-216381:-1:exon

PAK4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: PAK4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase PAK 4 isoform X1
translation: MLLPHWFPAQISSIPSCFSQASSLTPPSLAAAVSSRGYSCLRTLLTDYRPGSVGESSTLPGLENGLVAGLTMFSKKKKRIEISAPSNFEHRVHTGYDQQEQKFTGLPRQWQGIIEESAKRPKPLVDPVCITAIQHGSQKTIVRGSKAAKDGSLTWLLDEFENMSVSRSNSLRRDSPPFPPRRDQLYQENGLSEGPAAARPHEDAGRSKEKSRHGARSELEQGKEKPREREEQRAHHHHHQQQPRGQEPGPKPAPPASGRPPPPEYPKTPAERDGWRDYPADRDYSEPADRVVRRERPEPSDKRPKSTYTAETSPQSPRDKRPLSGPNIRTPNIPVSEGVMKTAQQTGRPFNTYPRAETDPGRGAGSQVKAEHRPGRPQEVASNGPVSGSASSSRAHPTGPPRSKNPEPPHPGLTPHASDPHLSRQPPPGPPPAPVGPQQPRSPQREPQRVSHEQFRAALQMVVDPGDPRTYLDNFIKIGEGSTGIVCIATVKSTGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVNKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGVMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNVHKVSPSLKGFLDRMLVRDPVQRATANELLKHPFLGKAGPPSCIVPLMRQNRMR
SIO_010081: PAK4
subclass of: SO_0000673
so part of: PAK4
location: complement(join(216226..216381,216458..216592,216688..216813,216894..217020,217105..217238,217343..217786,218216..218905,220511..220734,227277..227469))
location: region:216226-227469:-1
so has part: feature:227277-227469:-1:exon
so has part: feature:220511-220734:-1:exon
so has part: feature:218216-218905:-1:exon
so has part: feature:217343-217786:-1:exon
so has part: feature:217105-217238:-1:exon
so has part: feature:216894-217020:-1:exon
so has part: feature:216688-216813:-1:exon
so has part: feature:216458-216592:-1:exon
so has part: feature:216226-216381:-1:exon

XP_055648449.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:227277-227469:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:220511-220734:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:218216-218905:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:217343-217786:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:217105-217238:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:216894-217020:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:216688-216813:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:216458-216592:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:216226-216381:-1:exon

PAK4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: PAK4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase PAK 4 isoform X3
translation: MFSKKKKRIEISAPSNFEHRVHTGYDQQEQKFTGLPRQWQGIIEESAKRPKPLVDPVCITAIQHGSQKTIVRGSKAAKDGSLTWLLDEFENMSVSRSNSLRRDSPPFPPRRDQLYQENGLSEGPAAARPHEDAGRSKEKSRHGARSELEQGKEKPREREEQRAHHHHHQQQPRGQEPGPKPAPPASGRPPPPEYPKTPAERDGWRDYPADRDYSEPADRVVRRERPEPSDKRPKSTYTAETSPQSPRDKRPLSGPNIRTPNIPVSEGVMKTAQQTGRPFNTYPRAETDPGRGAGSQVKAEHRPGRPQEVASNGPVSGSASSSRAHPTGPPRSKNPEPPHPGLTPHASDPHLSRQPPPGPPPAPVGPQQPRSPQREPQRVSHEQFRAALQMVVDPGDPRTYLDNFIKIGEGSTGIVCIATVKSTGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVNKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGVMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNVHKVSPSLKGFLDRMLVRDPVQRATANELLKHPFLGKAGPPSCIVPLMRQNRMR
SIO_010081: PAK4
subclass of: SO_0000673
so part of: PAK4
location: complement(join(216226..216381,216458..216592,216688..216813,216894..217020,217105..217238,217343..217786,218216..218905,220511..220714))
location: region:216226-220714:-1
so has part: feature:220511-220714:-1:exon
so has part: feature:218216-218905:-1:exon
so has part: feature:217343-217786:-1:exon
so has part: feature:217105-217238:-1:exon
so has part: feature:216894-217020:-1:exon
so has part: feature:216688-216813:-1:exon
so has part: feature:216458-216592:-1:exon
so has part: feature:216226-216381:-1:exon

XP_055648451.1
type: Protein
SIO_000068: ncbiprotein

position:220714:-1
position: 220714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:220511-220714:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:218216-218905:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:217343-217786:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:217105-217238:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:216894-217020:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:216688-216813:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:216458-216592:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:216226-216381:-1:exon

PAK4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: PAK4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase PAK 4 isoform X3
translation: MFSKKKKRIEISAPSNFEHRVHTGYDQQEQKFTGLPRQWQGIIEESAKRPKPLVDPVCITAIQHGSQKTIVRGSKAAKDGSLTWLLDEFENMSVSRSNSLRRDSPPFPPRRDQLYQENGLSEGPAAARPHEDAGRSKEKSRHGARSELEQGKEKPREREEQRAHHHHHQQQPRGQEPGPKPAPPASGRPPPPEYPKTPAERDGWRDYPADRDYSEPADRVVRRERPEPSDKRPKSTYTAETSPQSPRDKRPLSGPNIRTPNIPVSEGVMKTAQQTGRPFNTYPRAETDPGRGAGSQVKAEHRPGRPQEVASNGPVSGSASSSRAHPTGPPRSKNPEPPHPGLTPHASDPHLSRQPPPGPPPAPVGPQQPRSPQREPQRVSHEQFRAALQMVVDPGDPRTYLDNFIKIGEGSTGIVCIATVKSTGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVNKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGVMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNVHKVSPSLKGFLDRMLVRDPVQRATANELLKHPFLGKAGPPSCIVPLMRQNRMR
SIO_010081: PAK4
subclass of: SO_0000673
so part of: PAK4
location: complement(join(216226..216381,216458..216592,216688..216813,216894..217020,217105..217238,217343..217786,218216..218905,220511..220714))
location: region:216226-220714:-1
so has part: feature:220511-220714:-1:exon
so has part: feature:218216-218905:-1:exon
so has part: feature:217343-217786:-1:exon
so has part: feature:217105-217238:-1:exon
so has part: feature:216894-217020:-1:exon
so has part: feature:216688-216813:-1:exon
so has part: feature:216458-216592:-1:exon
so has part: feature:216226-216381:-1:exon

XP_055648452.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:220511-220714:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:218216-218905:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:217343-217786:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:217105-217238:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:216894-217020:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:216688-216813:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:216458-216592:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:216226-216381:-1:exon

PAK4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: PAK4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase PAK 4 isoform X3
translation: MFSKKKKRIEISAPSNFEHRVHTGYDQQEQKFTGLPRQWQGIIEESAKRPKPLVDPVCITAIQHGSQKTIVRGSKAAKDGSLTWLLDEFENMSVSRSNSLRRDSPPFPPRRDQLYQENGLSEGPAAARPHEDAGRSKEKSRHGARSELEQGKEKPREREEQRAHHHHHQQQPRGQEPGPKPAPPASGRPPPPEYPKTPAERDGWRDYPADRDYSEPADRVVRRERPEPSDKRPKSTYTAETSPQSPRDKRPLSGPNIRTPNIPVSEGVMKTAQQTGRPFNTYPRAETDPGRGAGSQVKAEHRPGRPQEVASNGPVSGSASSSRAHPTGPPRSKNPEPPHPGLTPHASDPHLSRQPPPGPPPAPVGPQQPRSPQREPQRVSHEQFRAALQMVVDPGDPRTYLDNFIKIGEGSTGIVCIATVKSTGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVNKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGVMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNVHKVSPSLKGFLDRMLVRDPVQRATANELLKHPFLGKAGPPSCIVPLMRQNRMR
SIO_010081: PAK4
subclass of: SO_0000673
so part of: PAK4
location: complement(join(216226..216381,216458..216592,216688..216813,216894..217020,217105..217238,217343..217786,218216..218905,220511..220714))
location: region:216226-220714:-1
so has part: feature:220511-220714:-1:exon
so has part: feature:218216-218905:-1:exon
so has part: feature:217343-217786:-1:exon
so has part: feature:217105-217238:-1:exon
so has part: feature:216894-217020:-1:exon
so has part: feature:216688-216813:-1:exon
so has part: feature:216458-216592:-1:exon
so has part: feature:216226-216381:-1:exon

XP_055648453.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:220511-220714:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:218216-218905:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:217343-217786:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:217105-217238:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:216894-217020:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:216688-216813:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:216458-216592:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:216226-216381:-1:exon

PAK4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: PAK4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase PAK 4 isoform X3
translation: MFSKKKKRIEISAPSNFEHRVHTGYDQQEQKFTGLPRQWQGIIEESAKRPKPLVDPVCITAIQHGSQKTIVRGSKAAKDGSLTWLLDEFENMSVSRSNSLRRDSPPFPPRRDQLYQENGLSEGPAAARPHEDAGRSKEKSRHGARSELEQGKEKPREREEQRAHHHHHQQQPRGQEPGPKPAPPASGRPPPPEYPKTPAERDGWRDYPADRDYSEPADRVVRRERPEPSDKRPKSTYTAETSPQSPRDKRPLSGPNIRTPNIPVSEGVMKTAQQTGRPFNTYPRAETDPGRGAGSQVKAEHRPGRPQEVASNGPVSGSASSSRAHPTGPPRSKNPEPPHPGLTPHASDPHLSRQPPPGPPPAPVGPQQPRSPQREPQRVSHEQFRAALQMVVDPGDPRTYLDNFIKIGEGSTGIVCIATVKSTGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVNKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGVMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNVHKVSPSLKGFLDRMLVRDPVQRATANELLKHPFLGKAGPPSCIVPLMRQNRMR
SIO_010081: PAK4
subclass of: SO_0000673
so part of: PAK4
location: complement(join(216226..216381,216458..216592,216688..216813,216894..217020,217105..217238,217343..217786,218216..218905,220511..220714))
location: region:216226-220714:-1
so has part: feature:220511-220714:-1:exon
so has part: feature:218216-218905:-1:exon
so has part: feature:217343-217786:-1:exon
so has part: feature:217105-217238:-1:exon
so has part: feature:216894-217020:-1:exon
so has part: feature:216688-216813:-1:exon
so has part: feature:216458-216592:-1:exon
so has part: feature:216226-216381:-1:exon

XP_055648454.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:220511-220714:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:218216-218905:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:217343-217786:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:217105-217238:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:216894-217020:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:216688-216813:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:216458-216592:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:216226-216381:-1:exon

PAK4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: PAK4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase PAK 4 isoform X3
translation: MFSKKKKRIEISAPSNFEHRVHTGYDQQEQKFTGLPRQWQGIIEESAKRPKPLVDPVCITAIQHGSQKTIVRGSKAAKDGSLTWLLDEFENMSVSRSNSLRRDSPPFPPRRDQLYQENGLSEGPAAARPHEDAGRSKEKSRHGARSELEQGKEKPREREEQRAHHHHHQQQPRGQEPGPKPAPPASGRPPPPEYPKTPAERDGWRDYPADRDYSEPADRVVRRERPEPSDKRPKSTYTAETSPQSPRDKRPLSGPNIRTPNIPVSEGVMKTAQQTGRPFNTYPRAETDPGRGAGSQVKAEHRPGRPQEVASNGPVSGSASSSRAHPTGPPRSKNPEPPHPGLTPHASDPHLSRQPPPGPPPAPVGPQQPRSPQREPQRVSHEQFRAALQMVVDPGDPRTYLDNFIKIGEGSTGIVCIATVKSTGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVNKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGVMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNVHKVSPSLKGFLDRMLVRDPVQRATANELLKHPFLGKAGPPSCIVPLMRQNRMR
SIO_010081: PAK4
subclass of: SO_0000673
so part of: PAK4
location: complement(join(216226..216381,216458..216592,216688..216813,216894..217020,217105..217238,217343..217786,218216..218905,220511..220714))
location: region:216226-220714:-1
so has part: feature:220511-220714:-1:exon
so has part: feature:218216-218905:-1:exon
so has part: feature:217343-217786:-1:exon
so has part: feature:217105-217238:-1:exon
so has part: feature:216894-217020:-1:exon
so has part: feature:216688-216813:-1:exon
so has part: feature:216458-216592:-1:exon
so has part: feature:216226-216381:-1:exon

XP_055648455.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:220511-220714:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:218216-218905:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:217343-217786:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:217105-217238:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:216894-217020:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:216688-216813:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:216458-216592:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:216226-216381:-1:exon

PAK4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: PAK4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase PAK 4 isoform X3
translation: MFSKKKKRIEISAPSNFEHRVHTGYDQQEQKFTGLPRQWQGIIEESAKRPKPLVDPVCITAIQHGSQKTIVRGSKAAKDGSLTWLLDEFENMSVSRSNSLRRDSPPFPPRRDQLYQENGLSEGPAAARPHEDAGRSKEKSRHGARSELEQGKEKPREREEQRAHHHHHQQQPRGQEPGPKPAPPASGRPPPPEYPKTPAERDGWRDYPADRDYSEPADRVVRRERPEPSDKRPKSTYTAETSPQSPRDKRPLSGPNIRTPNIPVSEGVMKTAQQTGRPFNTYPRAETDPGRGAGSQVKAEHRPGRPQEVASNGPVSGSASSSRAHPTGPPRSKNPEPPHPGLTPHASDPHLSRQPPPGPPPAPVGPQQPRSPQREPQRVSHEQFRAALQMVVDPGDPRTYLDNFIKIGEGSTGIVCIATVKSTGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVNKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGVMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNVHKVSPSLKGFLDRMLVRDPVQRATANELLKHPFLGKAGPPSCIVPLMRQNRMR
SIO_010081: PAK4
subclass of: SO_0000673
so part of: PAK4
location: complement(join(216226..216381,216458..216592,216688..216813,216894..217020,217105..217238,217343..217786,218216..218905,220511..220714))
location: region:216226-220714:-1
so has part: feature:220511-220714:-1:exon
so has part: feature:218216-218905:-1:exon
so has part: feature:217343-217786:-1:exon
so has part: feature:217105-217238:-1:exon
so has part: feature:216894-217020:-1:exon
so has part: feature:216688-216813:-1:exon
so has part: feature:216458-216592:-1:exon
so has part: feature:216226-216381:-1:exon

XP_055648456.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:220511-220714:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:218216-218905:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:217343-217786:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:217105-217238:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:216894-217020:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:216688-216813:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:216458-216592:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:216226-216381:-1:exon

PAK4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: PAK4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase PAK 4 isoform X3
translation: MFSKKKKRIEISAPSNFEHRVHTGYDQQEQKFTGLPRQWQGIIEESAKRPKPLVDPVCITAIQHGSQKTIVRGSKAAKDGSLTWLLDEFENMSVSRSNSLRRDSPPFPPRRDQLYQENGLSEGPAAARPHEDAGRSKEKSRHGARSELEQGKEKPREREEQRAHHHHHQQQPRGQEPGPKPAPPASGRPPPPEYPKTPAERDGWRDYPADRDYSEPADRVVRRERPEPSDKRPKSTYTAETSPQSPRDKRPLSGPNIRTPNIPVSEGVMKTAQQTGRPFNTYPRAETDPGRGAGSQVKAEHRPGRPQEVASNGPVSGSASSSRAHPTGPPRSKNPEPPHPGLTPHASDPHLSRQPPPGPPPAPVGPQQPRSPQREPQRVSHEQFRAALQMVVDPGDPRTYLDNFIKIGEGSTGIVCIATVKSTGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVNKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGVMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNVHKVSPSLKGFLDRMLVRDPVQRATANELLKHPFLGKAGPPSCIVPLMRQNRMR
SIO_010081: PAK4
subclass of: SO_0000673
so part of: PAK4
location: complement(join(216226..216381,216458..216592,216688..216813,216894..217020,217105..217238,217343..217786,218216..218905,220511..220714))
location: region:216226-220714:-1
so has part: feature:220511-220714:-1:exon
so has part: feature:218216-218905:-1:exon
so has part: feature:217343-217786:-1:exon
so has part: feature:217105-217238:-1:exon
so has part: feature:216894-217020:-1:exon
so has part: feature:216688-216813:-1:exon
so has part: feature:216458-216592:-1:exon
so has part: feature:216226-216381:-1:exon

XP_055648458.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:220511-220714:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:218216-218905:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:217343-217786:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:217105-217238:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:216894-217020:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:216688-216813:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:216458-216592:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:216226-216381:-1:exon

MRPS12
type: Gene
subclass of: SO_0000704
RO_0002162: 8954
gene: MRPS12
note: mitochondrial ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 239202..240025
location: region:239202-240025:1
so has part: feature:239202-240025:1:exon
subclass of: SO_0000010

101919036
type: Gene
SIO_000068: ncbigene

position:239202:1
position: 239202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:240025:1
position: 240025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239202-240025:1:exon

MRPS12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: MRPS12
product: mitochondrial ribosomal protein S12
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons
transcript id: XM_013299938.3
SIO_010081: MRPS12
subclass of: SO_0000673
so part of: MRPS12
location: join(239202..239236,239345..239402,239480..240025)
location: region:239202-240025:1
so has part: feature:239202-239236:1:exon
so has part: feature:239345-239402:1:exon
so has part: feature:239480-240025:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:239202-239236:1:exon

position:239236:1
position: 239236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:239345-239402:1:exon

position:239345:1
position: 239345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:239402:1
position: 239402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:239480-240025:1:exon

position:239480:1
position: 239480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MRPS12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: MRPS12
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: 28S ribosomal protein S12, mitochondrial
translation: MPARALLKAAASLRGCATGALPPAPMLGKQPVPLYPQQAAAMATLNQMHRQGRPKPPPPKLGATFGRPQIKGVVIKNLIRKPKKPNSANRKCARVRLSNGKEAVAFIPGEGHNLQEHHVVLVQGGRTQDLPGVKLTIIRGKYDCAHVQKKK
SIO_010081: MRPS12
subclass of: SO_0000673
so part of: MRPS12
location: join(239354..239402,239480..239888)
location: region:239354-239888:1
so has part: feature:239354-239402:1:exon
so has part: feature:239480-239888:1:exon

XP_013155392.2
type: Protein
SIO_000068: ncbiprotein

position:239354:1
position: 239354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:239888:1
position: 239888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239354-239402:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:239480-239888:1:exon

SARS2
type: Gene
subclass of: SO_0000704
RO_0002162: 8954
gene: SARS2
note: seryl-tRNA synthetase 2, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 239925..244824
location: region:239925-244824:1
so has part: feature:239925-244824:1:exon
subclass of: SO_0000010

129782924
type: Gene
SIO_000068: ncbigene

position:239925:1
position: 239925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:244824:1
position: 244824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239925-244824:1:exon

SARS2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: SARS2
product: seryl-tRNA synthetase 2, mitochondrial
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 6 bases in 4 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_055792466.1
SIO_010081: SARS2
subclass of: SO_0000673
so part of: SARS2
location: join(239925..239939,240623..240835,241387..241486,241701..241946,242035..242089,242406..242469,242572..242678,242796..242843,242931..243039,243153..243198,243353..243440,243522..243635,243755..243848,244082..244174,244317..244382,244472..244824)
location: region:239925-244824:1
so has part: feature:239925-239939:1:exon
so has part: feature:240623-240835:1:exon
so has part: feature:241387-241486:1:exon
so has part: feature:241701-241946:1:exon
so has part: feature:242035-242089:1:exon
so has part: feature:242406-242469:1:exon
so has part: feature:242572-242678:1:exon
so has part: feature:242796-242843:1:exon
so has part: feature:242931-243039:1:exon
so has part: feature:243153-243198:1:exon
so has part: feature:243353-243440:1:exon
so has part: feature:243522-243635:1:exon
so has part: feature:243755-243848:1:exon
so has part: feature:244082-244174:1:exon
so has part: feature:244317-244382:1:exon
so has part: feature:244472-244824:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:239925-239939:1:exon

position:239939:1
position: 239939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:240623-240835:1:exon

position:240623:1
position: 240623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:240835:1
position: 240835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:241387-241486:1:exon

position:241387:1
position: 241387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:241486:1
position: 241486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:241701-241946:1:exon

position:241701:1
position: 241701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:241946:1
position: 241946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:242035-242089:1:exon

position:242035:1
position: 242035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:242089:1
position: 242089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:242406-242469:1:exon

position:242406:1
position: 242406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:242469:1
position: 242469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:242572-242678:1:exon

position:242572:1
position: 242572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:242678:1
position: 242678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:242796-242843:1:exon

position:242796:1
position: 242796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:242843:1
position: 242843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:242931-243039:1:exon

position:242931:1
position: 242931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:243039:1
position: 243039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:243153-243198:1:exon

position:243153:1
position: 243153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:243198:1
position: 243198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:243353-243440:1:exon

position:243353:1
position: 243353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:243440:1
position: 243440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:243522-243635:1:exon

position:243522:1
position: 243522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:243635:1
position: 243635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:243755-243848:1:exon

position:243755:1
position: 243755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:243848:1
position: 243848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:244082-244174:1:exon

position:244082:1
position: 244082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:244174:1
position: 244174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:244317-244382:1:exon

position:244317:1
position: 244317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:244382:1
position: 244382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:244472-244824:1:exon

position:244472:1
position: 244472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SARS2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: SARS2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 6 bases in 4 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: serine--tRNA ligase, mitochondrial
translation: MEMLCGRRFGAGGGRRAGAPGRGEGGTGGGRGGAEPTYEHVREGRSARPQLDVAALSEREVERRRGALRGGDLGGIVRSWARLGEVRASIARLQAEKNQVAQGVRALLGPWGGGSPPPGRGILARGWGGCAPHAPPHTPSSPSSPAYTSLRAQGRQIRPELQQLLAEEAALDEQFYIQALQLPNRTHPEAPVGDESQARVVEVVGEKPVFTFKPKGHLELGESLDIIRQRRLSHVSGHRSYYLCGAGALLQHALVRFAMTKLLSKGFLPMTVPDLLRGAVFEGCGMQPNATPSPIYTIDPSRFEDLCLAGTSEVGIAGYFMDHAVRLEDLPLRIVCSSTCYRAETDTGREPWGLYRVHQFTKVEMFGVTAAESGAESEALLAEFVALQKEIFSELGLHYRVLDMPTEELGLPAYRKFDIEAWMPGRGKYGEISSASNCTDYQSRRLNIMYSDSARRLRHAHTVNGTACAVSRMLIALLECNQLPDGSVRVPPALQPLIGQTVLTRPPAPLLRYIGPNQPGGGPEGP
SIO_010081: SARS2
subclass of: SO_0000673
so part of: SARS2
location: join(239925..239939,240623..240835,241387..241486,241701..241946,242035..242089,242406..242469,242572..242678,242796..242843,242931..243039,243153..243198,243353..243440,243522..243635,243755..243848,244082..244174,244317..244382,244472..244600)
location: region:239925-244600:1
so has part: feature:239925-239939:1:exon
so has part: feature:240623-240835:1:exon
so has part: feature:241387-241486:1:exon
so has part: feature:241701-241946:1:exon
so has part: feature:242035-242089:1:exon
so has part: feature:242406-242469:1:exon
so has part: feature:242572-242678:1:exon
so has part: feature:242796-242843:1:exon
so has part: feature:242931-243039:1:exon
so has part: feature:243153-243198:1:exon
so has part: feature:243353-243440:1:exon
so has part: feature:243522-243635:1:exon
so has part: feature:243755-243848:1:exon
so has part: feature:244082-244174:1:exon
so has part: feature:244317-244382:1:exon
so has part: feature:244472-244600:1:exon

XP_055648441.1
type: Protein
SIO_000068: ncbiprotein

position:244600:1
position: 244600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239925-239939:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:240623-240835:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:241387-241486:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:241701-241946:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:242035-242089:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:242406-242469:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:242572-242678:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:242796-242843:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:242931-243039:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:243153-243198:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:243353-243440:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:243522-243635:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:243755-243848:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:244082-244174:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:244317-244382:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:244472-244600:1:exon

NFKBIB
type: Gene
subclass of: SO_0000704
RO_0002162: 8954
gene: NFKBIB
note: NFKB inhibitor beta; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(245145..247862)
location: region:245145-247862:-1
so has part: feature:245145-247862:-1:exon
subclass of: SO_0000010

129782926
type: Gene
SIO_000068: ncbigene

position:245145:-1
position: 245145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:247862:-1
position: 247862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:245145-247862:-1:exon

NFKBIB
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: NFKBIB
product: NFKB inhibitor beta
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
transcript id: XM_055792470.1
SIO_010081: NFKBIB
subclass of: SO_0000673
so part of: NFKBIB
location: complement(join(245145..245207,245368..245613,245708..245796,246417..246645,246762..246867,247468..247862))
location: region:245145-247862:-1
so has part: feature:247468-247862:-1:exon
so has part: feature:246762-246867:-1:exon
so has part: feature:246417-246645:-1:exon
so has part: feature:245708-245796:-1:exon
so has part: feature:245368-245613:-1:exon
so has part: feature:245145-245207:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:247468-247862:-1:exon

position:247468:-1
position: 247468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:246762-246867:-1:exon

position:246762:-1
position: 246762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:246867:-1
position: 246867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:246417-246645:-1:exon

position:246417:-1
position: 246417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:246645:-1
position: 246645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:245708-245796:-1:exon

position:245708:-1
position: 245708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:245796:-1
position: 245796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:245368-245613:-1:exon

position:245368:-1
position: 245368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:245613:-1
position: 245613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:245145-245207:-1:exon

position:245207:-1
position: 245207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NFKBIB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: NFKBIB
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: NF-kappa-B inhibitor beta
translation: MAAAAEAAAAPPPGEVKRTEGDEWCDSGLGSLGEGQLGPFPASPGPASPGPALGSVGAAEGAQEAGEAPAAVGGDPTAWLRHVLGFLTEDGDTALHLAVIHEHEAFLDSILQYTGGTEYLDLQNDLGQTALHIAVILGLSGFVRKLRAAGAGLCLQERGGHTALHLACREGRRGCARHLLGTPPAPPARHQEEARAQLDSVNYDGYTPLHVAVLRKDLEMVELLLSAGADLNKAEPSCGRRPLHLAVEAQSPEVAECLLRAGADPAARMYVGYTPLYSARHRPHPRLPQLLRRFGAQDXPGDSDDSPDEGEGDNSDEEYDDIVINSGRCVD
SIO_010081: NFKBIB
subclass of: SO_0000673
so part of: NFKBIB
location: complement(join(245160..245207,245368..245613,245708..245796,246417..246645,246762..246867,247468..247745))
location: region:245160-247745:-1
so has part: feature:247468-247745:-1:exon
so has part: feature:246762-246867:-1:exon
so has part: feature:246417-246645:-1:exon
so has part: feature:245708-245796:-1:exon
so has part: feature:245368-245613:-1:exon
so has part: feature:245160-245207:-1:exon

XP_055648445.1
type: Protein
SIO_000068: ncbiprotein

position:245160:-1
position: 245160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:247745:-1
position: 247745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247468-247745:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:246762-246867:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:246417-246645:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:245708-245796:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:245368-245613:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:245160-245207:-1:exon

SIRT2
type: Gene
subclass of: SO_0000704
RO_0002162: 8954
gene: SIRT2
note: sirtuin 2; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 248108..251953
location: region:248108-251953:1
so has part: feature:248108-251953:1:exon
subclass of: SO_0000010

106112562
type: Gene
SIO_000068: ncbigene

position:248108:1
position: 248108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:251953:1
position: 251953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:248108-251953:1:exon

SIRT2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: SIRT2
product: sirtuin 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
transcript id: XM_055792489.1
SIO_010081: SIRT2
subclass of: SO_0000673
so part of: SIRT2
location: join(248108..248219,248322..248368,248481..248520,248652..248768,248872..248913,249014..249120,249232..249288,249418..249486,249597..249726,250171..250230,250339..250394,250533..250609,250699..250750,250838..250905,251559..251625,251750..251953)
location: region:248108-251953:1
so has part: feature:248108-248219:1:exon
so has part: feature:248322-248368:1:exon
so has part: feature:248481-248520:1:exon
so has part: feature:248652-248768:1:exon
so has part: feature:248872-248913:1:exon
so has part: feature:249014-249120:1:exon
so has part: feature:249232-249288:1:exon
so has part: feature:249418-249486:1:exon
so has part: feature:249597-249726:1:exon
so has part: feature:250171-250230:1:exon
so has part: feature:250339-250394:1:exon
so has part: feature:250533-250609:1:exon
so has part: feature:250699-250750:1:exon
so has part: feature:250838-250905:1:exon
so has part: feature:251559-251625:1:exon
so has part: feature:251750-251953:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:248108-248219:1:exon

position:248219:1
position: 248219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:248322-248368:1:exon

position:248322:1
position: 248322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:248368:1
position: 248368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:248481-248520:1:exon

position:248481:1
position: 248481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:248520:1
position: 248520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:248652-248768:1:exon

position:248652:1
position: 248652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:248768:1
position: 248768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:248872-248913:1:exon

position:248872:1
position: 248872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:248913:1
position: 248913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:249014-249120:1:exon

position:249014:1
position: 249014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:249120:1
position: 249120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:249232-249288:1:exon

position:249232:1
position: 249232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:249288:1
position: 249288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:249418-249486:1:exon

position:249418:1
position: 249418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:249486:1
position: 249486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:249597-249726:1:exon

position:249597:1
position: 249597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:249726:1
position: 249726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:250171-250230:1:exon

position:250171:1
position: 250171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:250230:1
position: 250230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:250339-250394:1:exon

position:250339:1
position: 250339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:250394:1
position: 250394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:250533-250609:1:exon

position:250533:1
position: 250533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:250609:1
position: 250609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:250699-250750:1:exon

position:250699:1
position: 250699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:250750:1
position: 250750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:250838-250905:1:exon

position:250838:1
position: 250838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:250905:1
position: 250905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:251559-251625:1:exon

position:251559:1
position: 251559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:251625:1
position: 251625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:251750-251953:1:exon

position:251750:1
position: 251750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SIRT2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: SIRT2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NAD-dependent protein deacetylase sirtuin-2
translation: MAEPEAPGACGDEAEQDAESPTSDTEPGASGDSDMELLRNLLSRTLGLGGEKPEKVLEELTLEGVSRFLQSDRCKNIVCMVGAGISTSAGIPDFRSPGTGLYANLQSYDLPYPEAIFEISFFKQNPEPFFALARELYPGQFKPTVCHYFMRLLQEKGLLLRCYTQNIDTLERVAGLEPERLVEAHGTFFSSHCLRPGCRQHYGLRWMEERIFSSLVPRCEKCQSVVKPDIVFFGESLPSRFFTLLQSDFQKVDLLIIMGTSLQVQPFASLVSRVPTNTPRLLINKEKTGQSDPLMSLMGFGCGMDFDSEKAYRDVAWLGECDAGCLALADLLGWKKELEELVKKEHAAIDAKARGGRGKARGGPPEPGGAGHEARGGPSEAGGSSHDPTP
SIO_010081: SIRT2
subclass of: SO_0000673
so part of: SIRT2
location: join(248204..248219,248322..248368,248481..248520,248652..248768,248872..248913,249014..249120,249232..249288,249418..249486,249597..249726,250171..250230,250339..250394,250533..250609,250699..250750,250838..250905,251559..251625,251750..251917)
location: region:248204-251917:1
so has part: feature:248204-248219:1:exon
so has part: feature:248322-248368:1:exon
so has part: feature:248481-248520:1:exon
so has part: feature:248652-248768:1:exon
so has part: feature:248872-248913:1:exon
so has part: feature:249014-249120:1:exon
so has part: feature:249232-249288:1:exon
so has part: feature:249418-249486:1:exon
so has part: feature:249597-249726:1:exon
so has part: feature:250171-250230:1:exon
so has part: feature:250339-250394:1:exon
so has part: feature:250533-250609:1:exon
so has part: feature:250699-250750:1:exon
so has part: feature:250838-250905:1:exon
so has part: feature:251559-251625:1:exon
so has part: feature:251750-251917:1:exon

XP_055648464.1
type: Protein
SIO_000068: ncbiprotein

position:248204:1
position: 248204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:251917:1
position: 251917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:248204-248219:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:248322-248368:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:248481-248520:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:248652-248768:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:248872-248913:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:249014-249120:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:249232-249288:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:249418-249486:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:249597-249726:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:250171-250230:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:250339-250394:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:250533-250609:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:250699-250750:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:250838-250905:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:251559-251625:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:251750-251917:1:exon

HNRNPL
type: Gene
subclass of: SO_0000704
RO_0002162: 8954
gene: HNRNPL
note: heterogeneous nuclear ribonucleoprotein L; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 253224..>256067
location: region:253224-256067:1
so has part: feature:253224-256067:1:exon
subclass of: SO_0000010

101921970
type: Gene
SIO_000068: ncbigene

position:253224:1
position: 253224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:256067:1
position: 256067
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:253224-256067:1:exon

HNRNPL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: HNRNPL
product: heterogeneous nuclear ribonucleoprotein L
inference: similar to RNA sequence, mRNA (same species):INSD:ICSV01044757.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 3 bases in 3 codons; added 534 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_055792490.1
SIO_010081: HNRNPL
subclass of: SO_0000673
so part of: HNRNPL
location: join(253224..253467,254899..255017,255101..255339,255484..255568,255811..255907,255995..>256067)
location: region:253224-256067:1
so has part: feature:253224-253467:1:exon
so has part: feature:254899-255017:1:exon
so has part: feature:255101-255339:1:exon
so has part: feature:255484-255568:1:exon
so has part: feature:255811-255907:1:exon
so has part: feature:255995-256067:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:253224-253467:1:exon

position:253467:1
position: 253467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:254899-255017:1:exon

position:254899:1
position: 254899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:255017:1
position: 255017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:255101-255339:1:exon

position:255101:1
position: 255101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:255339:1
position: 255339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:255484-255568:1:exon

position:255484:1
position: 255484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:255568:1
position: 255568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:255811-255907:1:exon

position:255811:1
position: 255811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:255907:1
position: 255907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:255995-256067:1:exon

position:255995:1
position: 255995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HNRNPL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: HNRNPL
inference: similar to RNA sequence, mRNA (same species):INSD:ICSV01044757.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 3 bases in 3 codons; added 527 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein L
translation: MSRRRWRGPQSAEGSGRGGEMGKMAAGGGGGGGSGRYYGGGGGGGEGGRAPKRQKTENVEPPPHGPGGPGGAGGGPGAAGAENYDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDILGACNAVNYAADNQIYIAGHPAFVNYSTXQKISRPGDTDDSRGVNNVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIXRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHGHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNIFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVWWVLPSGWGWEAPSPPR
SIO_010081: HNRNPL
subclass of: SO_0000673
so part of: HNRNPL
location: join(253224..253467,254899..255017,255101..255339,255484..255568,255811..255907,255995..>256067)
location: region:253224-256067:1
so has part: feature:253224-253467:1:exon
so has part: feature:254899-255017:1:exon
so has part: feature:255101-255339:1:exon
so has part: feature:255484-255568:1:exon
so has part: feature:255811-255907:1:exon
so has part: feature:255995-256067:1:exon

XP_055648465.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:253224-253467:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:254899-255017:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:255101-255339:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:255484-255568:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:255811-255907:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:255995-256067:1:exon

FOSB
type: Gene
subclass of: SO_0000704
RO_0002162: 8954
gene: FOSB
note: FosB proto-oncogene, AP-1 transcription factor subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(263389..270012)
location: region:263389-270012:-1
so has part: feature:263389-270012:-1:exon
subclass of: SO_0000010

129782928
type: Gene
SIO_000068: ncbigene

position:263389:-1
position: 263389
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:270012:-1
position: 270012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:263389-270012:-1:exon

FOSB
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: FOSB
product: FosB proto-oncogene, AP-1 transcription factor subunit
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
transcript id: XM_055792491.1
SIO_010081: FOSB
subclass of: SO_0000673
so part of: FOSB
location: complement(join(263389..265612,265776..265925,266874..266981,267095..267404,268729..270012))
location: region:263389-270012:-1
so has part: feature:268729-270012:-1:exon
so has part: feature:267095-267404:-1:exon
so has part: feature:266874-266981:-1:exon
so has part: feature:265776-265925:-1:exon
so has part: feature:263389-265612:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:268729-270012:-1:exon

position:268729:-1
position: 268729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:267095-267404:-1:exon

position:267095:-1
position: 267095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:267404:-1
position: 267404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:266874-266981:-1:exon

position:266874:-1
position: 266874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:266981:-1
position: 266981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:265776-265925:-1:exon

position:265776:-1
position: 265776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:265925:-1
position: 265925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:263389-265612:-1:exon

position:265612:-1
position: 265612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

FOSB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: FOSB
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: protein FosB
translation: MYQGFPGDYDSGSRCSSSPSAESQYLSSVDSFGSPGAAAAAQECSGLGDMPGSFVPTVTAITTSQDLQWLVQPTLISSVQPTLISSVAQSQPPGAPMAHPPPPVDPYDLPGPSYSTPGMGAFATGSTAPPARPTRARPRRSREETLTPEEEEKRRVRRERNKLAAAKCRNRRRELTDRLQAETDQLEEEKAELESEIAELQKEKDRLEFVLVAHAPACKLPYEDVGSLGAQREPPAEPRISGAAAATSPRTP
SIO_010081: FOSB
subclass of: SO_0000673
so part of: FOSB
location: complement(join(265547..265612,265776..265925,266874..266981,267095..267404,268729..268854))
location: region:265547-268854:-1
so has part: feature:268729-268854:-1:exon
so has part: feature:267095-267404:-1:exon
so has part: feature:266874-266981:-1:exon
so has part: feature:265776-265925:-1:exon
so has part: feature:265547-265612:-1:exon

XP_055648466.1
type: Protein
SIO_000068: ncbiprotein

position:265547:-1
position: 265547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:268854:-1
position: 268854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:268729-268854:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:267095-267404:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:266874-266981:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:265776-265925:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:265547-265612:-1:exon

RTN2
type: Gene
subclass of: SO_0000704
RO_0002162: 8954
gene: RTN2
note: reticulon 2; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(272481..278700)
location: region:272481-278700:-1
so has part: feature:272481-278700:-1:exon
subclass of: SO_0000010

101920606
type: Gene
SIO_000068: ncbigene

position:272481:-1
position: 272481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:278700:-1
position: 278700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:272481-278700:-1:exon

RTN2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: RTN2
product: reticulon 2
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon
transcript id: XM_055792467.1
SIO_010081: RTN2
subclass of: SO_0000673
so part of: RTN2
location: complement(join(272481..272728,272845..272903,273083..273129,273603..273672,274171..274309,274647..274854,275781..275942,276252..276623,276740..276784,277677..277889,278614..278700))
location: region:272481-278700:-1
so has part: feature:278614-278700:-1:exon
so has part: feature:277677-277889:-1:exon
so has part: feature:276740-276784:-1:exon
so has part: feature:276252-276623:-1:exon
so has part: feature:275781-275942:-1:exon
so has part: feature:274647-274854:-1:exon
so has part: feature:274171-274309:-1:exon
so has part: feature:273603-273672:-1:exon
so has part: feature:273083-273129:-1:exon
so has part: feature:272845-272903:-1:exon
so has part: feature:272481-272728:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:278614-278700:-1:exon

position:278614:-1
position: 278614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:277677-277889:-1:exon

position:277677:-1
position: 277677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:277889:-1
position: 277889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:276740-276784:-1:exon

position:276740:-1
position: 276740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:276784:-1
position: 276784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:276252-276623:-1:exon

position:276252:-1
position: 276252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:276623:-1
position: 276623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:275781-275942:-1:exon

position:275781:-1
position: 275781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:275942:-1
position: 275942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:274647-274854:-1:exon

position:274647:-1
position: 274647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:274854:-1
position: 274854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:274171-274309:-1:exon

position:274171:-1
position: 274171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:274309:-1
position: 274309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:273603-273672:-1:exon

position:273603:-1
position: 273603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:273672:-1
position: 273672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:273083-273129:-1:exon

position:273083:-1
position: 273083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:273129:-1
position: 273129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:272845-272903:-1:exon

position:272845:-1
position: 272845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:272903:-1
position: 272903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:272481-272728:-1:exon

position:272728:-1
position: 272728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RTN2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: RTN2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: reticulon-2
translation: MATPPVPAVPAFLKGQRLRVVPTYLGSGAQMPAPGSRCRSRCPAPRWAPPPAPPPPPPPFVRRGPRHGGAVMRGGAGPGATGSPMRGPPPWGRSWASPTAKRLHPRLPPRRTPRRVATRSRTSPSCRWHEPPEEEEEEEDEDGVTAAGGEPRGPPRELTFSYIAFQGGGSSNEPAPRCRRDSRRGRPPRLSSGLPGGPLRGPDPRLAARAPPKRPEEPPPPLEGQLEVGGGPTRFGGPSAPAPQPPPAVPPQSAGGALLLPPPAPPPDPPSIPDPPPAPPEQSLSPPASDVLVWELLYWRAPGRSALVLVGVLGTLGCLARFSAISVGAYGALATLAVTVPLRLHRVALRVLRRHPPEPPCRTQPEGTVGLSPEEQQRWARRLAQHLVAATHTLTRLFLVHSVPESLKFAFFFYLLTYVGAVCNGLTLLGAGVICAFTFPVLYRHHQAQIDQYVSLVRSHLSHLRARIQAKLSSAKVKPR
SIO_010081: RTN2
subclass of: SO_0000673
so part of: RTN2
location: complement(join(272686..272728,272845..272903,273083..273129,273603..273672,274171..274309,274647..274854,275781..275942,276252..276623,276740..276784,277677..277889,278614..278700))
location: region:272686-278700:-1
so has part: feature:278614-278700:-1:exon
so has part: feature:277677-277889:-1:exon
so has part: feature:276740-276784:-1:exon
so has part: feature:276252-276623:-1:exon
so has part: feature:275781-275942:-1:exon
so has part: feature:274647-274854:-1:exon
so has part: feature:274171-274309:-1:exon
so has part: feature:273603-273672:-1:exon
so has part: feature:273083-273129:-1:exon
so has part: feature:272845-272903:-1:exon
so has part: feature:272686-272728:-1:exon

XP_055648442.1
type: Protein
SIO_000068: ncbiprotein

position:272686:-1
position: 272686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:278614-278700:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:277677-277889:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:276740-276784:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:276252-276623:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:275781-275942:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:274647-274854:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:274171-274309:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:273603-273672:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:273083-273129:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:272845-272903:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:272686-272728:-1:exon

LOC129782925
type: Gene
subclass of: SO_0000704
RO_0002162: 8954
gene: LOC129782925
note: vasodilator-stimulated phosphoprotein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 278738..284012
location: region:278738-284012:1
so has part: feature:278738-284012:1:exon
subclass of: SO_0000010

129782925
type: Gene
SIO_000068: ncbigene

position:278738:1
position: 278738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:284012:1
position: 284012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:278738-284012:1:exon

LOC129782925
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: LOC129782925
product: vasodilator-stimulated phosphoprotein-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons
transcript id: XM_055792468.1
SIO_010081: LOC129782925
subclass of: SO_0000673
so part of: LOC129782925
location: join(278738..278801,279402..279545,280640..280812,281236..281405,281506..281572,281685..281725,282040..282077,282161..282270,282691..282734,282833..282954,283237..283317,283404..283461,283561..284012)
location: region:278738-284012:1
so has part: feature:278738-278801:1:exon
so has part: feature:279402-279545:1:exon
so has part: feature:280640-280812:1:exon
so has part: feature:281236-281405:1:exon
so has part: feature:281506-281572:1:exon
so has part: feature:281685-281725:1:exon
so has part: feature:282040-282077:1:exon
so has part: feature:282161-282270:1:exon
so has part: feature:282691-282734:1:exon
so has part: feature:282833-282954:1:exon
so has part: feature:283237-283317:1:exon
so has part: feature:283404-283461:1:exon
so has part: feature:283561-284012:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:278738-278801:1:exon

position:278801:1
position: 278801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:279402-279545:1:exon

position:279402:1
position: 279402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:279545:1
position: 279545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:280640-280812:1:exon

position:280640:1
position: 280640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:280812:1
position: 280812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:281236-281405:1:exon

position:281236:1
position: 281236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:281405:1
position: 281405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:281506-281572:1:exon

position:281506:1
position: 281506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:281572:1
position: 281572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:281685-281725:1:exon

position:281685:1
position: 281685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:281725:1
position: 281725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:282040-282077:1:exon

position:282040:1
position: 282040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:282077:1
position: 282077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:282161-282270:1:exon

position:282161:1
position: 282161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:282270:1
position: 282270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:282691-282734:1:exon

position:282691:1
position: 282691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:282734:1
position: 282734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:282833-282954:1:exon

position:282833:1
position: 282833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:282954:1
position: 282954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:283237-283317:1:exon

position:283237:1
position: 283237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:283317:1
position: 283317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:283404-283461:1:exon

position:283404:1
position: 283404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:283461:1
position: 283461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:283561-284012:1:exon

position:283561:1
position: 283561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC129782925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: LOC129782925
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: vasodilator-stimulated phosphoprotein-like
translation: MRSWPWEFALGRTEVTGTGEHREQYCGHWELVSGALGSTSTGGTVTIWNCETVLCSARASVLLYDDTHKQWVAAGGGPQTLSCVQLYHHPGTNAFRLVGRKMQPDQQVVLNCPLGRGLRYSQATPQFHQWREARRVWGLSFGAPREAALFAAAVLRALRALEEGHPPCPGQTLTVQLQRSPEQQERHVLEDPERRVAPAAAIAGAKLRKVSKDEAPGAGAPPAPPKGDGARGGGGGGLMEEMSAMLARRTRWSRALGPRGSPAGAPLGEGEGGWGLGPPPPHCSPPAEPVRRTPGRKSQLHTAQDEVSHPSCPRWTPPSPADEPDLERMKQELLEEVRRELQKMKEEIIEAFVVELRKRSARPSHPPH
SIO_010081: LOC129782925
subclass of: SO_0000673
so part of: LOC129782925
location: join(278797..278801,279402..279545,280640..280812,281236..281405,281506..281572,281685..281725,282040..282077,282161..282270,282691..282734,282833..282954,283237..283317,283404..283461,283561..283616)
location: region:278797-283616:1
so has part: feature:278797-278801:1:exon
so has part: feature:279402-279545:1:exon
so has part: feature:280640-280812:1:exon
so has part: feature:281236-281405:1:exon
so has part: feature:281506-281572:1:exon
so has part: feature:281685-281725:1:exon
so has part: feature:282040-282077:1:exon
so has part: feature:282161-282270:1:exon
so has part: feature:282691-282734:1:exon
so has part: feature:282833-282954:1:exon
so has part: feature:283237-283317:1:exon
so has part: feature:283404-283461:1:exon
so has part: feature:283561-283616:1:exon

XP_055648443.1
type: Protein
SIO_000068: ncbiprotein

position:278797:1
position: 278797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:283616:1
position: 283616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:278797-278801:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:279402-279545:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:280640-280812:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:281236-281405:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:281506-281572:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:281685-281725:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:282040-282077:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:282161-282270:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:282691-282734:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:282833-282954:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:283237-283317:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:283404-283461:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:283561-283616:1:exon

OPA3
type: Gene
subclass of: SO_0000704
RO_0002162: 8954
gene: OPA3
note: outer mitochondrial membrane lipid metabolism regulator OPA3; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(285676..286476)
location: region:285676-286476:-1
so has part: feature:285676-286476:-1:exon
subclass of: SO_0000010

129782927
type: Gene
SIO_000068: ncbigene

position:285676:-1
position: 285676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:286476:-1
position: 286476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:285676-286476:-1:exon

OPA3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: OPA3
product: outer mitochondrial membrane lipid metabolism regulator OPA3
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
transcript id: XM_055792471.1
SIO_010081: OPA3
subclass of: SO_0000673
so part of: OPA3
location: complement(join(285676..286138,286275..286476))
location: region:285676-286476:-1
so has part: feature:286275-286476:-1:exon
so has part: feature:285676-286138:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:286275-286476:-1:exon

position:286275:-1
position: 286275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:285676-286138:-1:exon

position:286138:-1
position: 286138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

OPA3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: OPA3
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: optic atrophy 3 protein
translation: MVAGAFPLAKLLTLGARQLSRPLAARIKAGARASPFFRTYISACPPPSVMYHWVEMRAKMRLMGFRGAAVKPLNEEAAAELGAELLGEAIVFGVGGLCLYLEYARQGGXRRAAGEGEQAAALRELREGLEGAAGRAGGHGGTPAAWPRRARPRPREP
SIO_010081: OPA3
subclass of: SO_0000673
so part of: OPA3
location: complement(join(285813..286138,286275..286422))
location: region:285813-286422:-1
so has part: feature:286275-286422:-1:exon
so has part: feature:285813-286138:-1:exon

XP_055648446.1
type: Protein
SIO_000068: ncbiprotein

position:285813:-1
position: 285813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:286422:-1
position: 286422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:286275-286422:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:285813-286138:-1:exon

GIPR
type: Gene
subclass of: SO_0000704
RO_0002162: 8954
gene: GIPR
note: gastric inhibitory polypeptide receptor; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 288880..>292954
location: region:288880-292954:1
so has part: feature:288880-292954:1:exon
subclass of: SO_0000010

101920247
type: Gene
SIO_000068: ncbigene

position:288880:1
position: 288880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:292954:1
position: 292954
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:288880-292954:1:exon

GIPR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8954
gene: GIPR
product: gastric inhibitory polypeptide receptor
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
transcript id: XM_055792469.1
SIO_010081: GIPR
subclass of: SO_0000673
so part of: GIPR
location: join(288880..288885,289019..289109,289189..289296,289425..289489,290831..290934,291013..291162,291750..291910,291989..292049,292180..292249,292361..292473,292821..>292954)
location: region:288880-292954:1
so has part: feature:288880-288885:1:exon
so has part: feature:289019-289109:1:exon
so has part: feature:289189-289296:1:exon
so has part: feature:289425-289489:1:exon
so has part: feature:290831-290934:1:exon
so has part: feature:291013-291162:1:exon
so has part: feature:291750-291910:1:exon
so has part: feature:291989-292049:1:exon
so has part: feature:292180-292249:1:exon
so has part: feature:292361-292473:1:exon
so has part: feature:292821-292954:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:288880-288885:1:exon

position:288885:1
position: 288885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:289019-289109:1:exon

position:289019:1
position: 289019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:289109:1
position: 289109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:289189-289296:1:exon

position:289189:1
position: 289189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:289296:1
position: 289296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:289425-289489:1:exon

position:289425:1
position: 289425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:289489:1
position: 289489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:290831-290934:1:exon

position:290831:1
position: 290831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:290934:1
position: 290934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:291013-291162:1:exon

position:291013:1
position: 291013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:291162:1
position: 291162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:291750-291910:1:exon

position:291750:1
position: 291750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:291910:1
position: 291910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:291989-292049:1:exon

position:291989:1
position: 291989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:292049:1
position: 292049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:292180-292249:1:exon

position:292180:1
position: 292180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:292249:1
position: 292249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:292361-292473:1:exon

position:292361:1
position: 292361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:292473:1
position: 292473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:292821-292954:1:exon

position:292821:1
position: 292821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GIPR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8954
gene: GIPR
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: gastric inhibitory polypeptide receptor
translation: MAEERSAQATLAAWHQYRHACELRLHLDPPAPGPVCNRSFDMYACWGDAVPNTTVTVPCPWYLPWHHRDWETFGGIIRSAQDPAQEQPLQRQAWLLEQFRLLYTVGYSLSLVALLLALLLLLTFRRLHCTRNFIHANLFLSFVLRAGAILTRDALLRRRLRPGPRTPLQLVGQEAVASCRLAQVVTQYCVGANYGWLLAEGLFLHKLLVLVAFSGRRCLPAFLLLGWGAPVLFVVPWVVARYLYENEGCWERNEKVAVWWIIRCPILVAVAVNFMVFVRIVRILVAKVRAHQVSQGDTRVRVGTWGGGVLARSTLTLIPLLGVHEVAFALLGEGHGGGTLRLVRLCLQLLLSS
SIO_010081: GIPR
subclass of: SO_0000673
so part of: GIPR
location: join(288880..288885,289019..289109,289189..289296,289425..289489,290831..290934,291013..291162,291750..291910,291989..292049,292180..292249,292361..292473,292821..>292954)
location: region:288880-292954:1
so has part: feature:288880-288885:1:exon
so has part: feature:289019-289109:1:exon
so has part: feature:289189-289296:1:exon
so has part: feature:289425-289489:1:exon
so has part: feature:290831-290934:1:exon
so has part: feature:291013-291162:1:exon
so has part: feature:291750-291910:1:exon
so has part: feature:291989-292049:1:exon
so has part: feature:292180-292249:1:exon
so has part: feature:292361-292473:1:exon
so has part: feature:292821-292954:1:exon

XP_055648444.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:288880-288885:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:289019-289109:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:289189-289296:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:289425-289489:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:290831-290934:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:291013-291162:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:291750-291910:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:291989-292049:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:292180-292249:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:292361-292473:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:292821-292954:1:exon