Falco peregrinus isolate bFalPer1 chromosome 20, bFalPer1.pri, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Falconiformes; Falconidae; Falco.
REFSEQ INFORMATION: The reference sequence is identical to\nCM042649.1.\nAssembly name: bFalPer1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2022/06/02. The original whole-genome shotgun project has the\naccession JAMOAR000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 14-DEC-2021\nAssembly Method :: Hifiasm v. 0.13.0; purge_dups v. 1.2.3;\n bionano solve v. 3.6.1; salsa2 v. 2.2;\n VGP pipeline v. 2.0; gEVAL v. curation\nAssembly Name :: bFalPer1.pri\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 28x\nSequencing Technology :: PacBio Sequel II HiFi; Arima Genomics\n Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_023634155.1-RS_2023_04\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Best-placed RefSeq; Gnomon;\n cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 04/26/2023\n##Genome-Annotation-Data-END##
Farooq Omar Al-Ajli, Souq Waqif Falcon Hospital
protein phosphatase 1 regulatory subunit 13 like; Derived by automated computational analysis using gene prediction method: Gnomon.
protein phosphatase 1 regulatory subunit 13 like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 5 bases in 5 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 5 bases in 5 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: relA-associated inhibitor
leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein; Derived by automated computational analysis using gene prediction method: Gnomon.
leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon.
leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein isoform X1
leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein isoform X2
DExH-box helicase 34; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
probable ATP-dependent RNA helicase DHX34
BRD4 interacting chromatin remodeling complex associated protein; Derived by automated computational analysis using gene prediction method: Gnomon.
BRD4 interacting chromatin remodeling complex associated protein
similar to RNA sequence, mRNA (same species):INSD:ICSV01023028.1
annotated by transcript or proteomic data
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 9 bases in 8 codons; added 236 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 9 bases in 8 codons; added 236 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: BRD4-interacting chromatin-remodeling complex-associated protein
uncharacterized LOC114014179; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 541; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein 541
E3 SUMO-protein ligase ZBED1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
similar to RNA sequence, mRNA (same species):INSD:ICSV01006587.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 224 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 84 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
leucine-rich repeat and fibronectin type III domain-containing protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
leucine-rich repeat and fibronectin type III domain-containing protein 1-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 10 bases in 9 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 10 bases in 9 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: leucine-rich repeat and fibronectin type III domain-containing protein 1-like
syncollin; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
p21 (RAC1) activated kinase 4; Derived by automated computational analysis using gene prediction method: Gnomon.
p21 (RAC1) activated kinase 4, transcript variant X1
p21 (RAC1) activated kinase 4, transcript variant X3
p21 (RAC1) activated kinase 4, transcript variant X4
p21 (RAC1) activated kinase 4, transcript variant X2
p21 (RAC1) activated kinase 4, transcript variant X5
p21 (RAC1) activated kinase 4, transcript variant X9
p21 (RAC1) activated kinase 4, transcript variant X8
p21 (RAC1) activated kinase 4, transcript variant X7
p21 (RAC1) activated kinase 4, transcript variant X6
serine/threonine-protein kinase PAK 4 isoform X2
serine/threonine-protein kinase PAK 4 isoform X1
serine/threonine-protein kinase PAK 4 isoform X3
mitochondrial ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: 28S ribosomal protein S12, mitochondrial
seryl-tRNA synthetase 2, mitochondrial; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 6 bases in 4 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 6 bases in 4 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: serine--tRNA ligase, mitochondrial
NFKB inhibitor beta; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: NF-kappa-B inhibitor beta
sirtuin 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
NAD-dependent protein deacetylase sirtuin-2
heterogeneous nuclear ribonucleoprotein L; Derived by automated computational analysis using gene prediction method: Gnomon.
heterogeneous nuclear ribonucleoprotein L
similar to RNA sequence, mRNA (same species):INSD:ICSV01044757.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 3 bases in 3 codons; added 534 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 3 bases in 3 codons; added 527 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein L
FosB proto-oncogene, AP-1 transcription factor subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
FosB proto-oncogene, AP-1 transcription factor subunit
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
reticulon 2; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
vasodilator-stimulated phosphoprotein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
vasodilator-stimulated phosphoprotein-like
LOW QUALITY PROTEIN: vasodilator-stimulated phosphoprotein-like
outer mitochondrial membrane lipid metabolism regulator OPA3; Derived by automated computational analysis using gene prediction method: Gnomon.
outer mitochondrial membrane lipid metabolism regulator OPA3
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
LOW QUALITY PROTEIN: optic atrophy 3 protein
gastric inhibitory polypeptide receptor; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: gastric inhibitory polypeptide receptor