Apus apus isolate bApuApu2 chromosome 29, bApuApu2.pri.cur, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Apodidae; Apodinae; Apus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM036531.1.\nAssembly name: bApuApu2.pri.cur\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/11/04. The original whole-genome shotgun project has the\naccession JAJGQY000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 17-JUN-2021\nAssembly Method :: FALCON-kit v. 1.8.1; FALCON-Unzip v.\n 1.3.7; purge-dups v. 0.0.3; Longranger v.\n 2.2.2; scaff10X v. 4.2; Bionano solve v.\n 3.5.1; Salsa2 v. 2.2.0; dentist v. 1.0.0;\n Freebays v. 1.3.2; gEVAL manual curation\n v. 2021-06-17\nAssembly Name :: bApuApu2.pri.cur\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 103.36x\nSequencing Technology :: PacBio Sequel I CLR; Bionano Genomics\n DLS; Arima Genomics Hi-C; 10X Genomics\n linked reads\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Updated annotation\nAnnotation Name :: GCF_020740795.1-RS_2023_02\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 02/26/2023\n##Genome-Annotation-Data-END##
bromodomain containing 4; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: bromodomain-containing protein 4
uncharacterized LOC127395136; Derived by automated computational analysis using gene prediction method: Gnomon.
A-kinase anchoring protein 8; Derived by automated computational analysis using gene prediction method: Gnomon.
A-kinase anchoring protein 8, transcript variant X2
A-kinase anchoring protein 8, transcript variant X1
A-kinase anchoring protein 8, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon.
A-kinase anchoring protein 8, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
A-kinase anchoring protein 8, transcript variant X5
A-kinase anchoring protein 8 like; Derived by automated computational analysis using gene prediction method: Gnomon.
A-kinase anchoring protein 8 like, transcript variant X3
A-kinase anchoring protein 8 like, transcript variant X1
A-kinase anchoring protein 8 like, transcript variant X2
A-kinase anchor protein 8-like isoform X3
A-kinase anchor protein 8-like isoform X1
A-kinase anchor protein 8-like isoform X2
WIZ zinc finger; Derived by automated computational analysis using gene prediction method: Gnomon.
nucleoredoxin like 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
GEM interacting protein; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 3 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: GEM-interacting protein
uncharacterized LOC127395135; Derived by automated computational analysis using gene prediction method: Gnomon.
lysophosphatidic acid receptor 2; Derived by automated computational analysis using gene prediction method: Gnomon.
lysophosphatidic acid receptor 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 19 Proteins
lysophosphatidic acid receptor 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 22 Proteins
lysophosphatidic acid receptor 2 isoform X1
lysophosphatidic acid receptor 2 isoform X2
PBX homeobox 4; Derived by automated computational analysis using gene prediction method: Gnomon.
pre-B-cell leukemia transcription factor 4
uncharacterized LOC127395134; Derived by automated computational analysis using gene prediction method: Gnomon.
DSN1 component of MIS12 kinetochore complex; Derived by automated computational analysis using gene prediction method: Gnomon.
DSN1 component of MIS12 kinetochore complex
kinetochore-associated protein DSN1 homolog
multivesicular body subunit 12A; Derived by automated computational analysis using gene prediction method: Gnomon.
ATPase 13A1; Derived by automated computational analysis using gene prediction method: Gnomon.
endoplasmic reticulum transmembrane helix translocase isoform X2
endoplasmic reticulum transmembrane helix translocase isoform X1
coiled-coil-helix-coiled-coil-helix domain containing 5; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil-helix-coiled-coil-helix domain containing 5
coiled-coil-helix-coiled-coil-helix domain-containing protein 5
LIM homeobox transcription factor 1-alpha-like; Derived by automated computational analysis using gene prediction method: Gnomon.
LIM homeobox transcription factor 1-alpha-like
hepatic lectin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
F-box and leucine rich repeat protein 12; Derived by automated computational analysis using gene prediction method: Gnomon.
F-box and leucine rich repeat protein 12, transcript variant X1
F-box and leucine rich repeat protein 12, transcript variant X2
ubiquitin like 5; Derived by automated computational analysis using gene prediction method: Gnomon.
peptidylprolyl cis/trans isomerase, NIMA-interacting 1; Derived by automated computational analysis using gene prediction method: Gnomon.
peptidylprolyl cis/trans isomerase, NIMA-interacting 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
microtubule-associated proteins 1A/1B light chain 3C-like; Derived by automated computational analysis using gene prediction method: Gnomon.
microtubule-associated proteins 1A/1B light chain 3C-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
olfactomedin 2; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
GIPC PDZ domain containing family member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
GIPC PDZ domain containing family member 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
uncharacterized LOC127395110; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127395112; Derived by automated computational analysis using gene prediction method: Gnomon.
guanylate-binding protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 75 Proteins
coiled-coil domain-containing protein 81-like; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil domain-containing protein 81-like
uncharacterized LOC127395108; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127395113; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC127395111; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil domain-containing protein 81-like, transcript variant X2
coiled-coil domain-containing protein 81-like, transcript variant X1
guanylate-binding protein 1-like, transcript variant X2
guanylate-binding protein 1-like, transcript variant X1
guanylate-binding protein 1-like, transcript variant X3
guanylate-binding protein 1-like isoform X2
guanylate-binding protein 1-like isoform X3
guanylate-binding protein 1-like isoform X1
major vault protein; Derived by automated computational analysis using gene prediction method: Gnomon.
major vault protein, transcript variant X5
major vault protein, transcript variant X1
major vault protein, transcript variant X2
major vault protein, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 1 Protein
major vault protein, transcript variant X6
major vault protein, transcript variant X3