Apus apus mitochondrion, complete genome.
type: Entry
definition: Apus apus mitochondrion, complete genome.
sequence version: NC_008540.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_008540.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Apus apus (common swift)
organism: Apus apus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Apodidae; Apodinae; Apus.
reference: 1
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from AM237310.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 17037
topology: circular
so has quality: SO_0000988
location: 1..17037
location: region:1-17037:1
RO_0002162: 8895

NC_008540
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Resolving the root of the avian mitogenomic tree by breaking up long branches
author: Slack, K.E.
author: Delsuc, F.
author: McLenachan, P.A.
author: Bartosch-Haerlid, A.
author: Arnason, U.
author: Penny, D.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (25-OCT-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Bartosch-Haerlid, A.
journal: Submitted (27-MAR-2006) Department of Cell and Organism Biology, Division of Evolutionary Molecular Syste, Soelvegatan 29, S-223 62 Lund, Sweden

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17037:1
position: 17037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17037:1:source
so part of: sequence
organism: Apus apus
organelle: mitochondrion
mol type: genomic DNA
country: Sweden

8895
type: Taxonomy
SIO_000068: taxonomy

tRNA-Phe
type: Gene
subclass of: SO_0000704
RO_0002162: 8895
gene: tRNA-Phe
so part of: sequence
location: 1..71
location: region:1-71:1
so has part: feature:1-71:1:exon
subclass of: SO_0000663

4443271
type: Gene
SIO_000068: ncbigene

position:71:1
position: 71
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-71:1:exon

tRNA-Phe
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
gene: tRNA-Phe
product: tRNA-Phe
anticodon: (pos:30..32,aa:Phe,seq:ctg)
SIO_010081: tRNA-Phe
subclass of: SO_0000673
so part of: tRNA-Phe
location: 1..71
location: region:1-71:1
so has part: feature:1-71:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1-71:1:exon

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 8895
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 72..1041
location: region:72-1041:1
so has part: feature:72-1041:1:region

position:72:1
position: 72
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1041:1
position: 1041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:72-1041:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
product: tRNA-Val
anticodon: (pos:1071..1073,aa:Val,seq:ctt)
so part of: sequence
location: 1042..1114
location: region:1042-1114:1
so has part: feature:1042-1114:1:region

position:1042:1
position: 1042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1114:1
position: 1114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1042-1114:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 8895
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1115..2716
location: region:1115-2716:1
so has part: feature:1115-2716:1:region

position:1115:1
position: 1115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2716:1
position: 2716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1115-2716:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
product: tRNA-Leu
anticodon: (pos:2752..2754,aa:Leu,seq:taa)
codon recognized: UUR
so part of: sequence
location: 2717..2790
location: region:2717-2790:1
so has part: feature:2717-2790:1:region

position:2717:1
position: 2717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2790:1
position: 2790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2717-2790:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 8895
gene: ND1
so part of: sequence
location: 2800..3777
location: region:2800-3777:1
so has part: feature:2800-3777:1:exon
subclass of: SO_0000010

4443264
type: Gene
SIO_000068: ncbigene

position:2800:1
position: 2800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3777:1
position: 3777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2800-3777:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8895
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MNHSPLLTYLTMSLSYAIPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIKEPVRPSTSSPLLFIMTPMLALLLAITIWIPLPLPFPLTDLNLGLLFLLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLSGNYTLNTLATTQEPLYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILFLNPSSLNSSTELFPIILASKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSMPICYAALPPHS
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2800..3777
location: region:2800-3777:1
so has part: feature:2800-3777:1:exon

YP_829489.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2800-3777:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
product: tRNA-Ile
anticodon: (pos:3806..3808,aa:Ile,seq:atg)
so part of: sequence
location: 3776..3848
location: region:3776-3848:1
so has part: feature:3776-3848:1:region

position:3776:1
position: 3776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3848:1
position: 3848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3776-3848:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
product: tRNA-Gln
anticodon: (pos:complement(3897..3899),aa:Gln,seq:tga)
so part of: sequence
location: complement(3862..3932)
location: region:3862-3932:-1
so has part: feature:3862-3932:-1:region

position:3862:-1
position: 3862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3932:-1
position: 3932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3862-3932:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
product: tRNA-Met
anticodon: (pos:3962..3964,aa:Met,seq:cca)
so part of: sequence
location: 3932..4001
location: region:3932-4001:1
so has part: feature:3932-4001:1:region

position:3932:1
position: 3932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4001:1
position: 4001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3932-4001:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 8895
gene: ND2
so part of: sequence
location: 4008..5048
location: region:4008-5048:1
so has part: feature:4008-5048:1:exon
subclass of: SO_0000010

4443265
type: Gene
SIO_000068: ncbigene

position:4008:1
position: 4008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5048:1
position: 5048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4008-5048:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8895
gene: ND2
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPYAKLIFTMSLLLGTTMTISSNHWMMAWTGLEINTLAIIPLIAKHHHPRAIEAAIKYFLTQAAASTLLLFSSTINAWSSGQWDITQLNHPIACTLLTTAIAMKLGLVPFHFWFPEVLQGSSLTTAMLLSTVMKFPPITILFMTSPSLNPTLLSIMAIASTALGGWMGLNQTQVRKILAFSSISHLGWMALILIYNPKLTLLTFYVYCLMTITVFLTLNTTKTLKLSTMMTSWTKTPTLNATLMMTLLSLAGLPPLTGFLPKWLTIQELTKQEMTSAATLIAILSLLGLFFYLRLAYYSTITLPPNPTNHMKQWHFYKPTNTLIPILTSLSALLLPLSPMILTIT
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4008..5048
location: region:4008-5048:1
so has part: feature:4008-5048:1:exon

YP_829490.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4008-5048:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
product: tRNA-Trp
anticodon: (pos:5084..5086,aa:Trp,seq:cct)
so part of: sequence
location: 5047..5116
location: region:5047-5116:1
so has part: feature:5047-5116:1:region

position:5047:1
position: 5047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5116:1
position: 5116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5047-5116:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
product: tRNA-Ala
anticodon: (pos:complement(5154..5156),aa:Ala,seq:tgc)
so part of: sequence
location: complement(5118..5186)
location: region:5118-5186:-1
so has part: feature:5118-5186:-1:region

position:5118:-1
position: 5118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5186:-1
position: 5186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5118-5186:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
product: tRNA-Asn
anticodon: (pos:complement(5226..5228),aa:Asn,seq:gtt)
so part of: sequence
location: complement(5189..5262)
location: region:5189-5262:-1
so has part: feature:5189-5262:-1:region

position:5189:-1
position: 5189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5262:-1
position: 5262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5189-5262:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
product: tRNA-Cys
anticodon: (pos:complement(5301..5303),aa:Cys,seq:gca)
so part of: sequence
location: complement(5265..5331)
location: region:5265-5331:-1
so has part: feature:5265-5331:-1:region

position:5265:-1
position: 5265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5331:-1
position: 5331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5265-5331:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
product: tRNA-Tyr
anticodon: (pos:complement(5367..5369),aa:Tyr,seq:gta)
so part of: sequence
location: complement(5331..5401)
location: region:5331-5401:-1
so has part: feature:5331-5401:-1:region

position:5401:-1
position: 5401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5331-5401:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 8895
gene: COX1
so part of: sequence
location: 5403..6953
location: region:5403-6953:1
so has part: feature:5403-6953:1:exon
subclass of: SO_0000010

4443260
type: Gene
SIO_000068: ncbigene

position:5403:1
position: 5403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6953:1
position: 6953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5403-6953:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8895
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MTYINRWLFSTNHKDIGTLYLIFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGVSSILGAINFITTAINMKPPALSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYAGKKEPFGYMGMVWAMLSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPIGIKVFSWLATLHGGTIKWDPPMLWALGFIFLFTIGGLTGIILANSSLDIALHDTYYVVAHFHYVLSMGAVFAILAGFTHWFPLFTGYTLHQTWSKAHFGVMFAGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTLSSIGSLISMTAVIMLMFIIWEAFASKRKVLQPELTATNIEWIHGCPPPYHTFEEPAFVQIQE
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5403..6953
location: region:5403-6953:1
so has part: feature:5403-6953:1:exon

YP_829491.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5403-6953:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
product: tRNA-Ser
anticodon: (pos:complement(6981..6983),aa:Ser,seq:tga)
codon recognized: UCN
so part of: sequence
location: complement(6945..7018)
location: region:6945-7018:-1
so has part: feature:6945-7018:-1:region

position:6945:-1
position: 6945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7018:-1
position: 7018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6945-7018:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
product: tRNA-Asp
anticodon: (pos:7049..7051,aa:Asp,seq:ttg)
so part of: sequence
location: 7021..7089
location: region:7021-7089:1
so has part: feature:7021-7089:1:region

position:7021:1
position: 7021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7089:1
position: 7089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7021-7089:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 8895
gene: COX2
so part of: sequence
location: 7092..7775
location: region:7092-7775:1
so has part: feature:7092-7775:1:exon
subclass of: SO_0000010

4443261
type: Gene
SIO_000068: ncbigene

position:7092:1
position: 7092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7775:1
position: 7775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7092-7775:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8895
gene: COX2
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit II
translation: MANHSQLGFQDASSPIMEELVEFHDHALMVALAICSLVLYLLTLMLMEKLSSNTVDAQEVELIWTILPAIVLILLALPSLQILYMMDEIDEPDLTLKAIGHQWYWSYEYTDFKDLTFDSYMIPTTELPPGHFRLLEVDHRVVIPMESPIRIIVTAGDVLHSWAIPTLGVKTDAIPGRLNQTSFITTRPGIFYGQCSEICGANHSYMPIVVESTPLAHFESWSSLLSS
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7092..7775
location: region:7092-7775:1
so has part: feature:7092-7775:1:exon

YP_829492.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7092-7775:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
product: tRNA-Lys
anticodon: (pos:7805..7807,aa:Lys,seq:ctt)
so part of: sequence
location: 7777..7845
location: region:7777-7845:1
so has part: feature:7777-7845:1:region

position:7777:1
position: 7777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7845:1
position: 7845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7777-7845:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 8895
gene: ATP8
so part of: sequence
location: 7847..8014
location: region:7847-8014:1
so has part: feature:7847-8014:1:exon
subclass of: SO_0000010

4443259
type: Gene
SIO_000068: ncbigene

position:7847:1
position: 7847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8014:1
position: 8014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7847-8014:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8895
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPNPWFFIMLLSWLTFTLIIQPKLLSFPPTNPPSNKTTAHTKTTPWTWPWT
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7847..8014
location: region:7847-8014:1
so has part: feature:7847-8014:1:exon

YP_829493.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7847-8014:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 8895
gene: ATP6
so part of: sequence
location: 8005..8688
location: region:8005-8688:1
so has part: feature:8005-8688:1:exon
subclass of: SO_0000010

4443258
type: Gene
SIO_000068: ncbigene

position:8005:1
position: 8005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8688:1
position: 8688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8005-8688:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8895
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MNLSFFDQFMSPHLLGIPLILLSTLFPALLLPTPGNRWITNRLSTLQSWSLHLIAKQLMTPLNKNGHKWALILTSLMTLLLMINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNQPSASLGHLLPEGTPTPLIPALIMIDTTSLLIRPLALGVRLTANLTAGDLLIQLISMATTALLSIMPAISILTTLILLLLTILEVAVAMIQAYVFVLLLSLYLQENI
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8005..8688
location: region:8005-8688:1
so has part: feature:8005-8688:1:exon

YP_829494.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8005-8688:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 8895
gene: COX3
so part of: sequence
location: 8688..9471
location: region:8688-9471:1
so has part: feature:8688-9471:1:exon
subclass of: SO_0000010

4443262
type: Gene
SIO_000068: ncbigene

position:9471:1
position: 9471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8688-9471:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8895
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9471,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHSYHMVDPSPWPIFGAIAALLTTSGLVMWFHHNSSQLLTLGLLSMILVMLQWWRDVIRESTFQGHHTPTVQKGLRYGMILFITSEAFFFLGFFWAFFHSSLVPTPELGGQWPPTGIQPLNPMEVPLLNTAILLASGVTVTWAHHSITEGNRKHAIHALTLTILLGFYFTALQAMEYYEAPFSIADGVYGSTFFVATGFHGLHVIIGSSFLSICLLRLIKYHFTSNHHFGFEAAAWYWHFVDVIWLFLYMTIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8688..9471
location: region:8688-9471:1
so has part: feature:8688-9471:1:exon

YP_829495.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8688-9471:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
product: tRNA-Gly
anticodon: (pos:9500..9502,aa:Gly,seq:ctt)
so part of: sequence
location: 9472..9540
location: region:9472-9540:1
so has part: feature:9472-9540:1:region

position:9472:1
position: 9472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9540:1
position: 9540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9472-9540:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 8895
gene: ND3
so part of: sequence
location: 9541..9891
location: region:9541-9891:1
so has part: feature:9541-9891:1:exon
subclass of: SO_0000010

4443266
type: Gene
SIO_000068: ncbigene

position:9541:1
position: 9541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9891:1
position: 9891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9541-9891:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8895
gene: ND3
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNMITFMLLLSLALSTILTTLNFWLAQITPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFALEIALLLPLPWATQLQSPTSTLTWASIIILLLTLGLVYEWSQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9541..9891
location: region:9541-9891:1
so has part: feature:9541-9891:1:exon

YP_829496.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9541-9891:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
product: tRNA-Arg
anticodon: (pos:9922..9924,aa:Arg,seq:ttt)
so part of: sequence
location: 9894..9962
location: region:9894-9962:1
so has part: feature:9894-9962:1:region

position:9894:1
position: 9894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9962:1
position: 9962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9894-9962:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 8895
gene: ND4L
so part of: sequence
location: 9964..10260
location: region:9964-10260:1
so has part: feature:9964-10260:1:exon
subclass of: SO_0000010

4443268
type: Gene
SIO_000068: ncbigene

position:9964:1
position: 9964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10260:1
position: 10260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9964-10260:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8895
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MSFTHLSFYSAFTLSSLGLAFHRTHLISPLLCLESMMLSMYIILSIWPAENQATTFTLMPILMLTFSACEAGTGLAMLVASTRTHGSDHLHTLNMLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 9964..10260
location: region:9964-10260:1
so has part: feature:9964-10260:1:exon

YP_829497.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9964-10260:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 8895
gene: ND4
so part of: sequence
location: 10254..11621
location: region:10254-11621:1
so has part: feature:10254-11621:1:exon
subclass of: SO_0000010

4443267
type: Gene
SIO_000068: ncbigene

position:10254:1
position: 10254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11621:1
position: 11621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10254-11621:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8895
gene: ND4
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKIILPTIMLLPTALLSPPKFLWTNTPTRSLMIAALSLQWLLPTYFPYKNLTQWTGIDQTSALLLVLSCWLLPLMIIASQNHLQHEPLSRKRTFIATLITIQPFIILAFSTTELTLFYISFEATLIPTLILITRWGNQPERLSAGIYLLFYTLISSLPLLVTILYLNTQTGTLHLAMLELTPFTLTSSWTGLLSSLALLMAFMVKAPLYGFHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRLTLLMGPLSTPLHYPFLTLSLWGALMTSSICLRQTDLKSLIAYSSVSHMGLVIAAGMIQTHWSFSGAMILMISYGLTSSMLFCLANTNYERTHSRILLLARGLQPILPLMATWWLLANLTNMALPPTTNLMAELTIMVALFNWSNLTIILTGTATFLTASYTLFMLLSTQRGPLPTHITSLQNSNTREHLLMALHIIPLLLLILKPSLIS
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10254..11621
location: region:10254-11621:1
so has part: feature:10254-11621:1:exon

YP_829498.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10254-11621:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
product: tRNA-His
anticodon: (pos:11662..11664,aa:His,seq:ctg)
so part of: sequence
location: 11633..11702
location: region:11633-11702:1
so has part: feature:11633-11702:1:region

position:11633:1
position: 11633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11702:1
position: 11702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11633-11702:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
product: tRNA-Ser
anticodon: (pos:11726..11728,aa:Ser,seq:ctg)
codon recognized: AGY
so part of: sequence
location: 11703..11767
location: region:11703-11767:1
so has part: feature:11703-11767:1:region

position:11703:1
position: 11703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11767:1
position: 11767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11703-11767:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
product: tRNA-Leu
anticodon: (pos:11798..11800,aa:Leu,seq:ctt)
codon recognized: CUN
so part of: sequence
location: 11768..11838
location: region:11768-11838:1
so has part: feature:11768-11838:1:region

position:11768:1
position: 11768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11838:1
position: 11838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11768-11838:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 8895
gene: ND5
so part of: sequence
location: 11839..13653
location: region:11839-13653:1
so has part: feature:11839-13653:1:exon
subclass of: SO_0000010

4443269
type: Gene
SIO_000068: ncbigene

position:11839:1
position: 11839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13653:1
position: 13653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11839-13653:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8895
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MDTTLLLNTFMLLTLTIILTPMLLPLLSNNLKNSPATITQAVKIAFLTSLVPTTLFMYSGMENIISHWEWKFIMNFKIPLSFKMDQYSMMFLPIALFVTWSILQFATWYMASEPYISKFFSYLLTFLIAMLTLTIANNMFLLFIGWEGVGIMSFLLIGWWHGRAEANTAALQAVLYNRIGDIGLILSMAWLASTMNTWEIHQTPSLTQTPTLPLLGLILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRTHPMLTNNQTALTICLCLGALSTLFAATCALTQNDIKKIIAFSTSSQLGLMMVAIGLDLPQLAFLHISTHAFFKAMLFLCSGSIIHNLAGEQDIRKMGGLQKSLPITTSCLTIGNLALMGTPFLAGFYSKDLIIENLNTSYLNTWALLLTLLATTFTATYSLRMTLLVQTGSTRTSTISAMNENDPTITSPILRLALGSILAGLLITSYLPPTKTPPMTMPILTKTAAIIVTALGIILALELSNMTTTLTYPKPNPYLNFSSTLGYFNPLTHRLSSTNLLNSGQKIASHLIDLSWYKKMGPEGLADMQLMATKTSTTLHSGLIKTYLGSFALSILIALLLI
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11839..13653
location: region:11839-13653:1
so has part: feature:11839-13653:1:exon

YP_829499.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11839-13653:1:exon

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 8895
gene: CYTB
so part of: sequence
location: 13665..14807
location: region:13665-14807:1
so has part: feature:13665-14807:1:exon
subclass of: SO_0000010

4443263
type: Gene
SIO_000068: ncbigene

position:13665:1
position: 13665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14807:1
position: 14807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13665-14807:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8895
gene: CYTB
codon start: 1
transl table: 2
product: cytochrome b
translation: MAPNPRKSHPLLKMVNNSLIDLPTPPNISAWWNFGSLLGICLATQIITGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLTFLHESGSNNPLGVVSNCDKIPFHPYFSTKDLLGFIIMLTPLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLCPFLHKSKQRTMTFRPLSQILFWVLVANLLILTWVGSQPVEHPFIIIGQLASLTYFTILLILFPLIGALENKMLNY
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 13665..14807
location: region:13665-14807:1
so has part: feature:13665-14807:1:exon

YP_829500.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13665-14807:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
product: tRNA-Thr
anticodon: (pos:14838..14840,aa:Thr,seq:ctt)
so part of: sequence
location: 14811..14879
location: region:14811-14879:1
so has part: feature:14811-14879:1:region

position:14811:1
position: 14811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14879:1
position: 14879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14811-14879:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
product: tRNA-Pro
anticodon: (pos:complement(14931..14933),aa:Pro,seq:tgg)
so part of: sequence
location: complement(14895..14963)
location: region:14895-14963:-1
so has part: feature:14895-14963:-1:region

position:14895:-1
position: 14895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14963:-1
position: 14963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14895-14963:-1:region

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 8895
gene: ND6
so part of: sequence
location: complement(14973..15494)
location: region:14973-15494:-1
so has part: feature:14973-15494:-1:exon
subclass of: SO_0000010

4443270
type: Gene
SIO_000068: ncbigene

position:14973:-1
position: 14973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15494:-1
position: 15494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14973-15494:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8895
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MTYFIVFLAVCFVLGGLAVASNPSPYYGVVGLVVASVVGCGWLVSLGLSFVSLVLFMVYLGGMLVVFVYSVSLAADPFPEAWGDWRVMGYGVGFALVLILGVVVGGFVKGWEWGVVAVDSGGMLSVRLDFGGVAMFYSWGVGMFLMGGWGLLLTLFVVLELVRGLSRGAIRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(14973..15494)
location: region:14973-15494:-1
so has part: feature:14973-15494:-1:exon

YP_829501.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14973-15494:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 8895
product: tRNA-Glu
anticodon: (pos:complement(15534..15536),aa:Glu,seq:ttc)
so part of: sequence
location: complement(15497..15567)
location: region:15497-15567:-1
so has part: feature:15497-15567:-1:region

position:15497:-1
position: 15497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15567:-1
position: 15567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15497-15567:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 8895
note: control region
so part of: sequence
location: 15568..17037
location: region:15568-17037:1
so has part: feature:15568-17037:1:region

position:15568:1
position: 15568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15568-17037:1:region