Cygnus olor isolate bCygOlo1 chromosome 28, bCygOlo1.pri.v2, whole genome shotgun sequence.
type: Entry
definition: Cygnus olor isolate bCygOlo1 chromosome 28, bCygOlo1.pri.v2, whole genome shotgun sequence.
sequence version: NC_049196.1
sequence date: 2021-04-08
sequence: sequence
division: CON
label: NC_049196.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA642912
dblink: SAMN12621369
keyword: WGS
keyword: RefSeq
source: Cygnus olor (mute swan)
organism: Cygnus olor
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM020092.2.\nAssembly name: bCygOlo1.pri.v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/03/31. The original whole-genome shotgun project has the\naccession WNMI00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 30-NOV-2020\nAssembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip\n v. 6.0.0.47841; purge_haplotigs v. 1.0.3+\n 1.Nov.2018; scaff10x v. 4.1.0; Bionano\n solve v. 3.2.1_04122018; Salsa HiC v.\n 2.2; Arrow smrtanalysis Pacbio polishing\n & gap filling v. 6.0.0.47841; longranger\n align v. 2.2.2; freebayes Illumina\n polishing v. 1.3.1; gEVAL manual curation\n v. 2020-11-30; VGP assembly pipeline\n individual v. 1.5\nAssembly Name :: bCygOlo1.pri.v2\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 60.23x\nSequencing Technology :: PacBio Sequel 1 CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Cygnus olor Annotation Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.6\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 3113520
topology: linear
so has quality: SO_0000987
location: 1..3113520
location: region:1-3113520:1
RO_0002162: 8869

NC_049196
type: RefSeq
SIO_000068: refseq

PRJNA642912
type: BioProject
SIO_000068: bioproject

SAMN12621369
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3113520:1
position: 3113520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-3113520:1:source
so part of: sequence
organism: Cygnus olor
mol type: genomic DNA
isolate: bCygOlo1
chromosome: 28
sex: male
tissue type: muscle
dev stage: adult
country: Germany: Mainau
lat lon: 50.149850 N 11.063270 E
collection date: 2015-07-01
collected by: Robert Kraus

8869
type: Taxonomy
SIO_000068: taxonomy

TMEM79
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: TMEM79
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 17192..20143
location: region:17192-20143:1
so has part: feature:17192-20143:1:exon
subclass of: SO_0000010

121061010
type: Gene
SIO_000068: ncbigene

position:17192:1
position: 17192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20143:1
position: 20143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17192-20143:1:exon

TMEM79
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: TMEM79
product: transmembrane protein 79
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_040539266.1
SIO_010081: TMEM79
subclass of: SO_0000673
so part of: TMEM79
location: join(17192..17340,18061..18889,19134..19347,19627..20143)
location: region:17192-20143:1
so has part: feature:17192-17340:1:exon
so has part: feature:18061-18889:1:exon
so has part: feature:19134-19347:1:exon
so has part: feature:19627-20143:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17192-17340:1:exon

position:17340:1
position: 17340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:18061-18889:1:exon

position:18061:1
position: 18061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18889:1
position: 18889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:19134-19347:1:exon

position:19134:1
position: 19134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19347:1
position: 19347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:19627-20143:1:exon

position:19627:1
position: 19627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TMEM79
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: TMEM79
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transmembrane protein 79
translation: MAAADPILPPEEVPLLELGKVAPATPLDKVPPAPDEHAGDPNATLLWDQCQHGGRGQKEPTETKRRSSPEGGREDPEEAAPVCPPAESKDDEAHGLPVMAAHVFVPINPQCIERKKQSTPWPQKEGKGGCVPHGDRPNGLRQKQVFLPVSPLRYRDPAGFEGLVAKPSAERSSCPCIRDCSADGLKAMASVVGALFLCPCLIYGAYVFLPFDAPLLPTISARLVYTLRCAAFATFPIVLGMIVSGISRLCSSALEPFGELQQEVEIHRTYVSQSVHLFILYFFNMAVLATYLQQEVLKLIPLLTGLFAISRLIYWLSYAIGRSFRAFGFSMTFLPLLAMLLWNLYSMFVLEPENLLAVAAPKSEDRSKEGGAKLRYWG
SIO_010081: TMEM79
subclass of: SO_0000673
so part of: TMEM79
location: join(18172..18889,19134..19347,19627..19831)
location: region:18172-19831:1
so has part: feature:18172-18889:1:exon
so has part: feature:19134-19347:1:exon
so has part: feature:19627-19831:1:exon

XP_040395200.1
type: Protein
SIO_000068: ncbiprotein

position:18172:1
position: 18172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19831:1
position: 19831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18172-18889:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:19134-19347:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:19627-19831:1:exon

LOC121060694
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: LOC121060694
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(21014..24458)
location: region:21014-24458:-1
so has part: feature:21014-24458:-1:exon
subclass of: SO_0000010

121060694
type: Gene
SIO_000068: ncbigene

position:21014:-1
position: 21014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24458:-1
position: 24458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21014-24458:-1:exon

LOC121060694
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060694
product: glycosylated lysosomal membrane protein
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 long SRA reads, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538702.1
SIO_010081: LOC121060694
subclass of: SO_0000673
so part of: LOC121060694
location: complement(join(21014..22064,22377..22654,22758..22976,23110..23292,23601..23858,24285..24458))
location: region:21014-24458:-1
so has part: feature:24285-24458:-1:exon
so has part: feature:23601-23858:-1:exon
so has part: feature:23110-23292:-1:exon
so has part: feature:22758-22976:-1:exon
so has part: feature:22377-22654:-1:exon
so has part: feature:21014-22064:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24285-24458:-1:exon

position:24285:-1
position: 24285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:23601-23858:-1:exon

position:23601:-1
position: 23601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23858:-1
position: 23858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:23110-23292:-1:exon

position:23110:-1
position: 23110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23292:-1
position: 23292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:22758-22976:-1:exon

position:22758:-1
position: 22758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22976:-1
position: 22976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:22377-22654:-1:exon

position:22377:-1
position: 22377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22654:-1
position: 22654
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:21014-22064:-1:exon

position:22064:-1
position: 22064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121060694
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060694
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glycosylated lysosomal membrane protein
translation: MRRLLLLLAGLLAAAGGREVLMQYNPGWNGSSVNLLHVQAVGPNDTLHYVWSSIGAPAALLVVTEGTSSALRINWTQLLSPAPAGAIWIEPAGSVVYSTAVVFTKVFEYSKASALEEVFYPTYDLSNFSWDSVNRTLNHTALTAEFVGGPAADPSGSFSNGSLTFRVTAYETSGRDGTLPGLLHTTNSSKVEFVLAGAAPRGNNSWFALEMATVEEAGVVQRLRSARSIDDEYTPTIFEMFSLVAESRNESSALSFLQWKATAYGSQAPKREDSIQCRSGSLKAANWTLPRSSIVHAYFGEGIGSTYTISAVNISFGGEDGSIYEEKRYLSWSALLGFGQPPKDTFSPLVISIMAVALGTPMVLLVVGSCVVLFAQGKRYTEYEPIN
SIO_010081: LOC121060694
subclass of: SO_0000673
so part of: LOC121060694
location: complement(join(21896..22064,22377..22654,22758..22976,23110..23292,23601..23858,24285..24341))
location: region:21896-24341:-1
so has part: feature:24285-24341:-1:exon
so has part: feature:23601-23858:-1:exon
so has part: feature:23110-23292:-1:exon
so has part: feature:22758-22976:-1:exon
so has part: feature:22377-22654:-1:exon
so has part: feature:21896-22064:-1:exon

XP_040394636.1
type: Protein
SIO_000068: ncbiprotein

position:21896:-1
position: 21896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24341:-1
position: 24341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24285-24341:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:23601-23858:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:23110-23292:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:22758-22976:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:22377-22654:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:21896-22064:-1:exon

CCT3
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: CCT3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(24566..32066)
location: region:24566-32066:-1
so has part: feature:24566-32066:-1:exon
subclass of: SO_0000010

121060693
type: Gene
SIO_000068: ncbigene

position:24566:-1
position: 24566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32066:-1
position: 32066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24566-32066:-1:exon

CCT3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CCT3
product: chaperonin containing TCP1 subunit 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 245 long SRA reads, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538701.1
SIO_010081: CCT3
subclass of: SO_0000673
so part of: CCT3
location: complement(join(24566..24951,25493..25624,26194..26439,26646..26826,26954..27035,27490..27622,28080..28229,28745..28931,29108..29225,29625..29721,30311..30373,30469..30519,30949..31010,31760..32066))
location: region:24566-32066:-1
so has part: feature:31760-32066:-1:exon
so has part: feature:30949-31010:-1:exon
so has part: feature:30469-30519:-1:exon
so has part: feature:30311-30373:-1:exon
so has part: feature:29625-29721:-1:exon
so has part: feature:29108-29225:-1:exon
so has part: feature:28745-28931:-1:exon
so has part: feature:28080-28229:-1:exon
so has part: feature:27490-27622:-1:exon
so has part: feature:26954-27035:-1:exon
so has part: feature:26646-26826:-1:exon
so has part: feature:26194-26439:-1:exon
so has part: feature:25493-25624:-1:exon
so has part: feature:24566-24951:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:31760-32066:-1:exon

position:31760:-1
position: 31760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:30949-31010:-1:exon

position:30949:-1
position: 30949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31010:-1
position: 31010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:30469-30519:-1:exon

position:30469:-1
position: 30469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30519:-1
position: 30519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:30311-30373:-1:exon

position:30311:-1
position: 30311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30373:-1
position: 30373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:29625-29721:-1:exon

position:29625:-1
position: 29625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29721:-1
position: 29721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:29108-29225:-1:exon

position:29108:-1
position: 29108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29225:-1
position: 29225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:28745-28931:-1:exon

position:28745:-1
position: 28745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28931:-1
position: 28931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:28080-28229:-1:exon

position:28080:-1
position: 28080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28229:-1
position: 28229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:27490-27622:-1:exon

position:27490:-1
position: 27490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27622:-1
position: 27622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:26954-27035:-1:exon

position:26954:-1
position: 26954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27035:-1
position: 27035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:26646-26826:-1:exon

position:26646:-1
position: 26646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26826:-1
position: 26826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:26194-26439:-1:exon

position:26194:-1
position: 26194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26439:-1
position: 26439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:25493-25624:-1:exon

position:25493:-1
position: 25493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25624:-1
position: 25624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:24566-24951:-1:exon

position:24951:-1
position: 24951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CCT3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CCT3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: T-complex protein 1 subunit gamma
translation: MMGPRPVLVLSQNMKRESGRKVQTGNITAAKTIADIIRTCLGPRAMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVIIGAYRKALDDMIGILKKIGTPVDVNNREMMLKIIKSAINTKAINRWSDLACTIALDAVKTVEFEENGRKEIDIKKYAKVEKIPGGFSEDSCVLRGIMVNKDVTHPRMRRLIKNPRIVLLDCSLEYKKGESQTDIEITREEDFARILQMEEEYIQQICEDLMRVKPDLVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRTDELREEDVGTGARLFEVKKIGDEYFAFITDCKDPKACTIILRGASKEILAEVERNLQDAMQVCRNVLIDPQLVPGGGATEMAVSHALTEKSKGMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRVLTSLRAKHTQEGSQTWGVNGETGALVDMKDLGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDEQSKQPAATEAAQE
SIO_010081: CCT3
subclass of: SO_0000673
so part of: CCT3
location: complement(join(24847..24951,25493..25624,26194..26439,26646..26826,26954..27035,27490..27622,28080..28229,28745..28931,29108..29225,29625..29721,30311..30373,30469..30519,30949..31010,31760..31790))
location: region:24847-31790:-1
so has part: feature:31760-31790:-1:exon
so has part: feature:30949-31010:-1:exon
so has part: feature:30469-30519:-1:exon
so has part: feature:30311-30373:-1:exon
so has part: feature:29625-29721:-1:exon
so has part: feature:29108-29225:-1:exon
so has part: feature:28745-28931:-1:exon
so has part: feature:28080-28229:-1:exon
so has part: feature:27490-27622:-1:exon
so has part: feature:26954-27035:-1:exon
so has part: feature:26646-26826:-1:exon
so has part: feature:26194-26439:-1:exon
so has part: feature:25493-25624:-1:exon
so has part: feature:24847-24951:-1:exon

XP_040394635.1
type: Protein
SIO_000068: ncbiprotein

position:24847:-1
position: 24847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31790:-1
position: 31790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31760-31790:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:30949-31010:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:30469-30519:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:30311-30373:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:29625-29721:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:29108-29225:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:28745-28931:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:28080-28229:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:27490-27622:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:26954-27035:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:26646-26826:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:26194-26439:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:25493-25624:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:24847-24951:-1:exon

SSR2
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: SSR2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 32926..36774
location: region:32926-36774:1
so has part: feature:32926-36774:1:exon
subclass of: SO_0000010

121060705
type: Gene
SIO_000068: ncbigene

position:32926:1
position: 32926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36774:1
position: 36774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32926-36774:1:exon

SSR2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: SSR2
product: signal sequence receptor subunit 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538730.1
SIO_010081: SSR2
subclass of: SO_0000673
so part of: SSR2
location: join(32926..33037,34114..34268,34825..34923,35288..35396,35571..35648,35957..36774)
location: region:32926-36774:1
so has part: feature:32926-33037:1:exon
so has part: feature:34114-34268:1:exon
so has part: feature:34825-34923:1:exon
so has part: feature:35288-35396:1:exon
so has part: feature:35571-35648:1:exon
so has part: feature:35957-36774:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:32926-33037:1:exon

position:33037:1
position: 33037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:34114-34268:1:exon

position:34114:1
position: 34114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34268:1
position: 34268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:34825-34923:1:exon

position:34825:1
position: 34825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34923:1
position: 34923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:35288-35396:1:exon

position:35288:1
position: 35288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35396:1
position: 35396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:35571-35648:1:exon

position:35571:1
position: 35571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35648:1
position: 35648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:35957-36774:1:exon

position:35957:1
position: 35957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SSR2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: SSR2
product: signal sequence receptor subunit 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 67 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_040538731.1
SIO_010081: SSR2
subclass of: SO_0000673
so part of: SSR2
location: join(32941..33043,34114..34268,34825..34923,35288..35396,35571..35648,35957..36774)
location: region:32941-36774:1
so has part: feature:32941-33043:1:exon
so has part: feature:34114-34268:1:exon
so has part: feature:34825-34923:1:exon
so has part: feature:35288-35396:1:exon
so has part: feature:35571-35648:1:exon
so has part: feature:35957-36774:1:exon

position:32941:1
position: 32941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32941-33043:1:exon

position:33043:1
position: 33043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:34114-34268:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:34825-34923:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:35288-35396:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:35571-35648:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:35957-36774:1:exon

SSR2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: SSR2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: translocon-associated protein subunit beta
translation: MKLPILAVFALFYVAHCEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEGGQVVVGFTSAPGQGGILAQREFDRRFSPHFLDWAAFGVMTLPSIGIPLLLWYSSKRKYDTPKTKKN
SIO_010081: SSR2
subclass of: SO_0000673
so part of: SSR2
location: join(34114..34268,34825..34923,35288..35396,35571..35648,35957..36067)
location: region:34114-36067:1
so has part: feature:34114-34268:1:exon
so has part: feature:34825-34923:1:exon
so has part: feature:35288-35396:1:exon
so has part: feature:35571-35648:1:exon
so has part: feature:35957-36067:1:exon

XP_040394664.1
type: Protein
SIO_000068: ncbiprotein

position:36067:1
position: 36067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34114-34268:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:34825-34923:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:35288-35396:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:35571-35648:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:35957-36067:1:exon

SSR2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: SSR2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: translocon-associated protein subunit beta
translation: MKLPILAVFALFYVAHCEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELSDDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATITYLAQEGGQVVVGFTSAPGQGGILAQREFDRRFSPHFLDWAAFGVMTLPSIGIPLLLWYSSKRKYDTPKTKKN
SIO_010081: SSR2
subclass of: SO_0000673
so part of: SSR2
location: join(34114..34268,34825..34923,35288..35396,35571..35648,35957..36067)
location: region:34114-36067:1
so has part: feature:34114-34268:1:exon
so has part: feature:34825-34923:1:exon
so has part: feature:35288-35396:1:exon
so has part: feature:35571-35648:1:exon
so has part: feature:35957-36067:1:exon

XP_040394665.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34114-34268:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:34825-34923:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:35288-35396:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:35571-35648:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:35957-36067:1:exon

CTSS
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: CTSS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(38891..43903)
location: region:38891-43903:-1
so has part: feature:38891-43903:-1:exon
subclass of: SO_0000010

121060702
type: Gene
SIO_000068: ncbigene

position:38891:-1
position: 38891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43903:-1
position: 43903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38891-43903:-1:exon

CTSS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CTSS
product: cathepsin S, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_040538726.1
SIO_010081: CTSS
subclass of: SO_0000673
so part of: CTSS
location: complement(join(38891..39401,39956..40058,40333..40498,41960..42109,42657..43127,43681..43903))
location: region:38891-43903:-1
so has part: feature:43681-43903:-1:exon
so has part: feature:42657-43127:-1:exon
so has part: feature:41960-42109:-1:exon
so has part: feature:40333-40498:-1:exon
so has part: feature:39956-40058:-1:exon
so has part: feature:38891-39401:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:43681-43903:-1:exon

position:43681:-1
position: 43681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:42657-43127:-1:exon

position:42657:-1
position: 42657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43127:-1
position: 43127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:41960-42109:-1:exon

position:41960:-1
position: 41960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42109:-1
position: 42109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:40333-40498:-1:exon

position:40333:-1
position: 40333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40498:-1
position: 40498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:39956-40058:-1:exon

position:39956:-1
position: 39956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40058:-1
position: 40058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:38891-39401:-1:exon

position:39401:-1
position: 39401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CTSS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CTSS
product: cathepsin S, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 long SRA reads, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538724.1
SIO_010081: CTSS
subclass of: SO_0000673
so part of: CTSS
location: complement(join(38891..39401,39956..40058,40333..40498,41659..41883,41960..42109,42657..43127,43681..43878))
location: region:38891-43878:-1
so has part: feature:43681-43878:-1:exon
so has part: feature:42657-43127:-1:exon
so has part: feature:41960-42109:-1:exon
so has part: feature:41659-41883:-1:exon
so has part: feature:40333-40498:-1:exon
so has part: feature:39956-40058:-1:exon
so has part: feature:38891-39401:-1:exon

position:43878:-1
position: 43878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43681-43878:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:42657-43127:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:41960-42109:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:41659-41883:-1:exon

position:41659:-1
position: 41659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41883:-1
position: 41883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:40333-40498:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:39956-40058:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:38891-39401:-1:exon

CTSS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CTSS
product: cathepsin S, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_040538728.1
SIO_010081: CTSS
subclass of: SO_0000673
so part of: CTSS
location: complement(join(38891..39401,39956..40058,40333..40498,41960..42109,42657..42779,42912..43127,43681..43870))
location: region:38891-43870:-1
so has part: feature:43681-43870:-1:exon
so has part: feature:42912-43127:-1:exon
so has part: feature:42657-42779:-1:exon
so has part: feature:41960-42109:-1:exon
so has part: feature:40333-40498:-1:exon
so has part: feature:39956-40058:-1:exon
so has part: feature:38891-39401:-1:exon

position:43870:-1
position: 43870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43681-43870:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:42912-43127:-1:exon

position:42912:-1
position: 42912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:42657-42779:-1:exon

position:42779:-1
position: 42779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:41960-42109:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:40333-40498:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:39956-40058:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:38891-39401:-1:exon

CTSS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CTSS
product: cathepsin S, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_040538727.1
SIO_010081: CTSS
subclass of: SO_0000673
so part of: CTSS
location: complement(join(38891..39401,39956..40058,40333..40498,41659..41883,41960..42109,42912..43127,43681..43865))
location: region:38891-43865:-1
so has part: feature:43681-43865:-1:exon
so has part: feature:42912-43127:-1:exon
so has part: feature:41960-42109:-1:exon
so has part: feature:41659-41883:-1:exon
so has part: feature:40333-40498:-1:exon
so has part: feature:39956-40058:-1:exon
so has part: feature:38891-39401:-1:exon

position:43865:-1
position: 43865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43681-43865:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:42912-43127:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:41960-42109:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:41659-41883:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:40333-40498:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:39956-40058:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:38891-39401:-1:exon

CTSS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CTSS
product: cathepsin S, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 340 long SRA reads, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538725.1
SIO_010081: CTSS
subclass of: SO_0000673
so part of: CTSS
location: complement(join(38891..39401,39956..40058,40333..40498,41659..41883,41960..42109,42657..42779,42912..43127,43681..43850))
location: region:38891-43850:-1
so has part: feature:43681-43850:-1:exon
so has part: feature:42912-43127:-1:exon
so has part: feature:42657-42779:-1:exon
so has part: feature:41960-42109:-1:exon
so has part: feature:41659-41883:-1:exon
so has part: feature:40333-40498:-1:exon
so has part: feature:39956-40058:-1:exon
so has part: feature:38891-39401:-1:exon

position:43850:-1
position: 43850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43681-43850:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:42912-43127:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:42657-42779:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:41960-42109:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:41659-41883:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:40333-40498:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:39956-40058:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:38891-39401:-1:exon

CTSS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CTSS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cathepsin S isoform X4
translation: MCGIAPAPWTRLCKMELLAYVAFLAVLAAVLGQPDPTLDWHWQLWKKAHGKEYRHQTSEEVSALLTGLKVLHGHNRTSTYQPQPGGSIPDTMDWREKGCVTEVKNQGACGSCWAFSAVGALEAQVKLKTGKLVSLSAQNLVDCSMMYGNKGCSGGFMTRAFQYIIDNDGIDSDESYPYMAQNGTCQYNISTRAATCSKYVELPYADEAALKDAVANIGPVSVAIDATQPTFFLYKSGVYDDPRCTQEVNHGVLVIGYGTLNDKDYWLVKNSWGVRFGDDGYIRMSRNHANHCGIASYASYPQI
SIO_010081: CTSS
subclass of: SO_0000673
so part of: CTSS
location: complement(join(39302..39401,39956..40058,40333..40498,41659..41883,41960..42109,42912..43079))
location: region:39302-43079:-1
so has part: feature:42912-43079:-1:exon
so has part: feature:41960-42109:-1:exon
so has part: feature:41659-41883:-1:exon
so has part: feature:40333-40498:-1:exon
so has part: feature:39956-40058:-1:exon
so has part: feature:39302-39401:-1:exon

XP_040394661.1
type: Protein
SIO_000068: ncbiprotein

position:39302:-1
position: 39302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43079:-1
position: 43079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42912-43079:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:41960-42109:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:41659-41883:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:40333-40498:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:39956-40058:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:39302-39401:-1:exon

CTSS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CTSS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cathepsin S isoform X5
translation: MCGIAPAPWTRLCKMELLAYVAFLAVLAAVLGQPDPTLDWHWQLWKKAHGKEYRHQKEEGERRVTWERNLRLVTLHNLEHSLGLHSYQLGMNHLADMTSEEVSALLTGLKVLHGHNRTSTYQPQPGGSIPDTMDWREKGCVTEVKNQNGTCQYNISTRAATCSKYVELPYADEAALKDAVANIGPVSVAIDATQPTFFLYKSGVYDDPRCTQEVNHGVLVIGYGTLNDKDYWLVKNSWGVRFGDDGYIRMSRNHANHCGIASYASYPQI
SIO_010081: CTSS
subclass of: SO_0000673
so part of: CTSS
location: complement(join(39302..39401,39956..40058,40333..40498,41960..42109,42657..42779,42912..43079))
location: region:39302-43079:-1
so has part: feature:42912-43079:-1:exon
so has part: feature:42657-42779:-1:exon
so has part: feature:41960-42109:-1:exon
so has part: feature:40333-40498:-1:exon
so has part: feature:39956-40058:-1:exon
so has part: feature:39302-39401:-1:exon

XP_040394662.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42912-43079:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:42657-42779:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:41960-42109:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:40333-40498:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:39956-40058:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:39302-39401:-1:exon

CTSS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CTSS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cathepsin S isoform X2
translation: MCGIAPAPWTRLCKMELLAYVAFLAVLAAVLGQPDPTLDWHWQLWKKAHGKEYRHQKEEGERRVTWERNLRLVTLHNLEHSLGLHSYQLGMNHLADMTSEEVSALLTGLKVLHGHNRTSTYQPQPGGSIPDTMDWREKGCVTEVKNQGACGSCWAFSAVGALEAQVKLKTGKLVSLSAQNLVDCSMMYGNKGCSGGFMTRAFQYIIDNDGIDSDESYPYMAQNGTCQYNISTRAATCSKYVELPYADEAALKDAVANIGPVSVAIDATQPTFFLYKSGVYDDPRCTQEVNHGVLVIGYGTLNDKDYWLVKNSWGVRFGDDGYIRMSRNHANHCGIASYASYPQI
SIO_010081: CTSS
subclass of: SO_0000673
so part of: CTSS
location: complement(join(39302..39401,39956..40058,40333..40498,41659..41883,41960..42109,42657..42779,42912..43079))
location: region:39302-43079:-1
so has part: feature:42912-43079:-1:exon
so has part: feature:42657-42779:-1:exon
so has part: feature:41960-42109:-1:exon
so has part: feature:41659-41883:-1:exon
so has part: feature:40333-40498:-1:exon
so has part: feature:39956-40058:-1:exon
so has part: feature:39302-39401:-1:exon

XP_040394659.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42912-43079:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:42657-42779:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:41960-42109:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:41659-41883:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:40333-40498:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:39956-40058:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:39302-39401:-1:exon

CTSS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CTSS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cathepsin S isoform X3
translation: MCGIAPAPWTRLCKMELLAYVAFLAVLAAVLGQPDPTLDWHWQLWKKAHGKEYRHQVGTVWGTRFVGGGGEGSNLPGEGQNSFGGPLLPTTALPGWVWFQKEEGERRVTWERNLRLVTLHNLEHSLGLHSYQLGMNHLADMTSEEVSALLTGLKVLHGHNRTSTYQPQPGGSIPDTMDWREKGCVTEVKNQNGTCQYNISTRAATCSKYVELPYADEAALKDAVANIGPVSVAIDATQPTFFLYKSGVYDDPRCTQEVNHGVLVIGYGTLNDKDYWLVKNSWGVRFGDDGYIRMSRNHANHCGIASYASYPQI
SIO_010081: CTSS
subclass of: SO_0000673
so part of: CTSS
location: complement(join(39302..39401,39956..40058,40333..40498,41960..42109,42657..43079))
location: region:39302-43079:-1
so has part: feature:42657-43079:-1:exon
so has part: feature:41960-42109:-1:exon
so has part: feature:40333-40498:-1:exon
so has part: feature:39956-40058:-1:exon
so has part: feature:39302-39401:-1:exon

XP_040394660.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42657-43079:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:41960-42109:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:40333-40498:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:39956-40058:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:39302-39401:-1:exon

CTSS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CTSS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cathepsin S isoform X1
translation: MCGIAPAPWTRLCKMELLAYVAFLAVLAAVLGQPDPTLDWHWQLWKKAHGKEYRHQVGTVWGTRFVGGGGEGSNLPGEGQNSFGGPLLPTTALPGWVWFQKEEGERRVTWERNLRLVTLHNLEHSLGLHSYQLGMNHLADMTSEEVSALLTGLKVLHGHNRTSTYQPQPGGSIPDTMDWREKGCVTEVKNQGACGSCWAFSAVGALEAQVKLKTGKLVSLSAQNLVDCSMMYGNKGCSGGFMTRAFQYIIDNDGIDSDESYPYMAQNGTCQYNISTRAATCSKYVELPYADEAALKDAVANIGPVSVAIDATQPTFFLYKSGVYDDPRCTQEVNHGVLVIGYGTLNDKDYWLVKNSWGVRFGDDGYIRMSRNHANHCGIASYASYPQI
SIO_010081: CTSS
subclass of: SO_0000673
so part of: CTSS
location: complement(join(39302..39401,39956..40058,40333..40498,41659..41883,41960..42109,42657..43079))
location: region:39302-43079:-1
so has part: feature:42657-43079:-1:exon
so has part: feature:41960-42109:-1:exon
so has part: feature:41659-41883:-1:exon
so has part: feature:40333-40498:-1:exon
so has part: feature:39956-40058:-1:exon
so has part: feature:39302-39401:-1:exon

XP_040394658.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42657-43079:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:41960-42109:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:41659-41883:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:40333-40498:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:39956-40058:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:39302-39401:-1:exon

CTSK
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: CTSK
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(46957..50067)
location: region:46957-50067:-1
so has part: feature:46957-50067:-1:exon
subclass of: SO_0000010

121060704
type: Gene
SIO_000068: ncbigene

position:46957:-1
position: 46957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:50067:-1
position: 50067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46957-50067:-1:exon

CTSK
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CTSK
product: cathepsin K
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 20 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538729.1
SIO_010081: CTSK
subclass of: SO_0000673
so part of: CTSK
location: complement(join(46957..47515,47595..47699,47816..47981,48075..48293,48372..48527,48646..48768,48975..49098,49869..50067))
location: region:46957-50067:-1
so has part: feature:49869-50067:-1:exon
so has part: feature:48975-49098:-1:exon
so has part: feature:48646-48768:-1:exon
so has part: feature:48372-48527:-1:exon
so has part: feature:48075-48293:-1:exon
so has part: feature:47816-47981:-1:exon
so has part: feature:47595-47699:-1:exon
so has part: feature:46957-47515:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:49869-50067:-1:exon

position:49869:-1
position: 49869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:48975-49098:-1:exon

position:48975:-1
position: 48975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:49098:-1
position: 49098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:48646-48768:-1:exon

position:48646:-1
position: 48646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48768:-1
position: 48768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:48372-48527:-1:exon

position:48372:-1
position: 48372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48527:-1
position: 48527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:48075-48293:-1:exon

position:48075:-1
position: 48075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48293:-1
position: 48293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:47816-47981:-1:exon

position:47816:-1
position: 47816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47981:-1
position: 47981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:47595-47699:-1:exon

position:47595:-1
position: 47595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47699:-1
position: 47699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:46957-47515:-1:exon

position:47515:-1
position: 47515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CTSK
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CTSK
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: cathepsin K
translation: MLGMWPTLLVLFVPMVVAQLHPEQALDIQWDLWKKTYRKQYNGEADEVARRLIWEKNLKYINTHNLEHTLGVHTFELAMNHLGDMTSEEVVRTMTGLKVPQSRPHRNETLYIPDWTDRAPAAVDWRRKGYVTPVKNQGQCGSCWAFSSVGALEGQLKRKTGKLLSLSPQNLVDCVANNNGCGGGYMTNAFEYVRQNRGIDSEDAYPYIGQDESCMYSPTGKAAKCRGYREIPEGNEKALKRAVARIGPVSVGIDASLPSFQFYSRGVYYDESCXAENINHAVLAVGYGTQKGTKHWIIKNSWGEEWGNKGYVLLARNMNNACGIANLASFPKM
SIO_010081: CTSK
subclass of: SO_0000673
so part of: CTSK
location: complement(join(47416..47515,47595..47699,47816..47981,48075..48293,48372..48527,48646..48768,48975..49098,49869..49876))
location: region:47416-49876:-1
so has part: feature:49869-49876:-1:exon
so has part: feature:48975-49098:-1:exon
so has part: feature:48646-48768:-1:exon
so has part: feature:48372-48527:-1:exon
so has part: feature:48075-48293:-1:exon
so has part: feature:47816-47981:-1:exon
so has part: feature:47595-47699:-1:exon
so has part: feature:47416-47515:-1:exon

XP_040394663.1
type: Protein
SIO_000068: ncbiprotein

position:47416:-1
position: 47416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:49876:-1
position: 49876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49869-49876:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:48975-49098:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:48646-48768:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:48372-48527:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:48075-48293:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:47816-47981:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:47595-47699:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:47416-47515:-1:exon

ARNT
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: ARNT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(51367..81264)
location: region:51367-81264:-1
so has part: feature:51367-81264:-1:exon
subclass of: SO_0000010

121060701
type: Gene
SIO_000068: ncbigene

position:51367:-1
position: 51367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81264:-1
position: 81264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51367-81264:-1:exon

ARNT
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: ARNT
product: aryl hydrocarbon receptor nuclear translocator, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_040538723.1
SIO_010081: ARNT
subclass of: SO_0000673
so part of: ARNT
location: complement(join(51367..54416,55007..55158,55645..55804,56424..56574,57239..57338,57929..58052,58436..58514,60605..60756,61560..61634,62100..62234,62408..62484,62926..63011,64132..64197,64614..64713,64978..65191,65350..65563,70796..70840,72025..72069,73345..73456,81112..81264))
location: region:51367-81264:-1
so has part: feature:81112-81264:-1:exon
so has part: feature:73345-73456:-1:exon
so has part: feature:72025-72069:-1:exon
so has part: feature:70796-70840:-1:exon
so has part: feature:65350-65563:-1:exon
so has part: feature:64978-65191:-1:exon
so has part: feature:64614-64713:-1:exon
so has part: feature:64132-64197:-1:exon
so has part: feature:62926-63011:-1:exon
so has part: feature:62408-62484:-1:exon
so has part: feature:62100-62234:-1:exon
so has part: feature:61560-61634:-1:exon
so has part: feature:60605-60756:-1:exon
so has part: feature:58436-58514:-1:exon
so has part: feature:57929-58052:-1:exon
so has part: feature:57239-57338:-1:exon
so has part: feature:56424-56574:-1:exon
so has part: feature:55645-55804:-1:exon
so has part: feature:55007-55158:-1:exon
so has part: feature:51367-54416:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:81112-81264:-1:exon

position:81112:-1
position: 81112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:73345-73456:-1:exon

position:73345:-1
position: 73345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:73456:-1
position: 73456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:72025-72069:-1:exon

position:72025:-1
position: 72025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:72069:-1
position: 72069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:70796-70840:-1:exon

position:70796:-1
position: 70796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:70840:-1
position: 70840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:65350-65563:-1:exon

position:65350:-1
position: 65350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:65563:-1
position: 65563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:64978-65191:-1:exon

position:64978:-1
position: 64978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:65191:-1
position: 65191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:64614-64713:-1:exon

position:64614:-1
position: 64614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:64713:-1
position: 64713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:64132-64197:-1:exon

position:64132:-1
position: 64132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:64197:-1
position: 64197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:62926-63011:-1:exon

position:62926:-1
position: 62926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:63011:-1
position: 63011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:62408-62484:-1:exon

position:62408:-1
position: 62408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:62484:-1
position: 62484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:62100-62234:-1:exon

position:62100:-1
position: 62100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:62234:-1
position: 62234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:61560-61634:-1:exon

position:61560:-1
position: 61560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:61634:-1
position: 61634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:60605-60756:-1:exon

position:60605:-1
position: 60605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:60756:-1
position: 60756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:58436-58514:-1:exon

position:58436:-1
position: 58436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:58514:-1
position: 58514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:57929-58052:-1:exon

position:57929:-1
position: 57929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:58052:-1
position: 58052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:57239-57338:-1:exon

position:57239:-1
position: 57239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57338:-1
position: 57338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:56424-56574:-1:exon

position:56424:-1
position: 56424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:56574:-1
position: 56574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:55645-55804:-1:exon

position:55645:-1
position: 55645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:55804:-1
position: 55804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:55007-55158:-1:exon

position:55007:-1
position: 55007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:55158:-1
position: 55158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:51367-54416:-1:exon

position:54416:-1
position: 54416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ARNT
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: ARNT
product: aryl hydrocarbon receptor nuclear translocator, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 42 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538718.1
SIO_010081: ARNT
subclass of: SO_0000673
so part of: ARNT
location: complement(join(51367..54416,55007..55158,55645..55804,56424..56574,57239..57338,57929..58052,58436..58514,58720..58830,60605..60756,61560..61634,62100..62234,62408..62484,62926..63011,64132..64197,64614..64713,64825..64890,64978..65191,65350..65563,70796..70840,72025..72069,73345..73456,81112..81264))
location: region:51367-81264:-1
so has part: feature:81112-81264:-1:exon
so has part: feature:73345-73456:-1:exon
so has part: feature:72025-72069:-1:exon
so has part: feature:70796-70840:-1:exon
so has part: feature:65350-65563:-1:exon
so has part: feature:64978-65191:-1:exon
so has part: feature:64825-64890:-1:exon
so has part: feature:64614-64713:-1:exon
so has part: feature:64132-64197:-1:exon
so has part: feature:62926-63011:-1:exon
so has part: feature:62408-62484:-1:exon
so has part: feature:62100-62234:-1:exon
so has part: feature:61560-61634:-1:exon
so has part: feature:60605-60756:-1:exon
so has part: feature:58720-58830:-1:exon
so has part: feature:58436-58514:-1:exon
so has part: feature:57929-58052:-1:exon
so has part: feature:57239-57338:-1:exon
so has part: feature:56424-56574:-1:exon
so has part: feature:55645-55804:-1:exon
so has part: feature:55007-55158:-1:exon
so has part: feature:51367-54416:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:81112-81264:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:73345-73456:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:72025-72069:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:70796-70840:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:65350-65563:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:64978-65191:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:64825-64890:-1:exon

position:64825:-1
position: 64825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:64890:-1
position: 64890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:64614-64713:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:64132-64197:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:62926-63011:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:62408-62484:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:62100-62234:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:61560-61634:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:60605-60756:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:58720-58830:-1:exon

position:58720:-1
position: 58720
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:58830:-1
position: 58830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
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ARNT
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: ARNT
product: aryl hydrocarbon receptor nuclear translocator, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_040538722.1
SIO_010081: ARNT
subclass of: SO_0000673
so part of: ARNT
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location: region:51367-81264:-1
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ARNT
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: ARNT
product: aryl hydrocarbon receptor nuclear translocator, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_040538721.1
SIO_010081: ARNT
subclass of: SO_0000673
so part of: ARNT
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location: region:51367-81264:-1
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ARNT
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: ARNT
product: aryl hydrocarbon receptor nuclear translocator, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_040538715.1
SIO_010081: ARNT
subclass of: SO_0000673
so part of: ARNT
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location: region:51367-81264:-1
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position:55016:-1
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ARNT
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: ARNT
product: aryl hydrocarbon receptor nuclear translocator, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 67 long SRA reads, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538714.1
SIO_010081: ARNT
subclass of: SO_0000673
so part of: ARNT
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location: region:51367-81264:-1
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ARNT
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: ARNT
product: aryl hydrocarbon receptor nuclear translocator, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 long SRA reads, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538720.1
SIO_010081: ARNT
subclass of: SO_0000673
so part of: ARNT
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location: region:51367-81263:-1
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position:81263:-1
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ARNT
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: ARNT
product: aryl hydrocarbon receptor nuclear translocator, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 69 long SRA reads, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538719.1
SIO_010081: ARNT
subclass of: SO_0000673
so part of: ARNT
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so has part: feature:64614-64713:-1:exon
so has part: feature:64132-64197:-1:exon
so has part: feature:62926-63011:-1:exon
so has part: feature:62408-62484:-1:exon
so has part: feature:62100-62234:-1:exon
so has part: feature:61560-61634:-1:exon
so has part: feature:60605-60756:-1:exon
so has part: feature:58720-58830:-1:exon
so has part: feature:58436-58514:-1:exon
so has part: feature:57929-58052:-1:exon
so has part: feature:57239-57338:-1:exon
so has part: feature:56424-56574:-1:exon
so has part: feature:55645-55804:-1:exon
so has part: feature:55007-55158:-1:exon
so has part: feature:51367-54416:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:81112-81263:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:73345-73456:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:72025-72069:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:70796-70840:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:68031-68075:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:65350-65563:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:64978-65191:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:64614-64713:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:64132-64197:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:62926-63011:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:62408-62484:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:62100-62234:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:61560-61634:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:60605-60756:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:58720-58830:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:58436-58514:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:57929-58052:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:57239-57338:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:56424-56574:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:55645-55804:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:55007-55158:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:51367-54416:-1:exon

ARNT
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: ARNT
product: aryl hydrocarbon receptor nuclear translocator, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_040538716.1
SIO_010081: ARNT
subclass of: SO_0000673
so part of: ARNT
location: complement(join(51367..54416,55007..55158,55645..55804,56424..56574,57239..57338,57929..58052,58436..58514,58720..58830,60605..60756,61560..61634,62100..62234,62408..62484,62926..63011,64132..64197,64614..64713,64825..64890,64978..65191,65350..65563,68031..68075,70796..70840,72025..72069,73345..73456,80236..80258))
location: region:51367-80258:-1
so has part: feature:80236-80258:-1:exon
so has part: feature:73345-73456:-1:exon
so has part: feature:72025-72069:-1:exon
so has part: feature:70796-70840:-1:exon
so has part: feature:68031-68075:-1:exon
so has part: feature:65350-65563:-1:exon
so has part: feature:64978-65191:-1:exon
so has part: feature:64825-64890:-1:exon
so has part: feature:64614-64713:-1:exon
so has part: feature:64132-64197:-1:exon
so has part: feature:62926-63011:-1:exon
so has part: feature:62408-62484:-1:exon
so has part: feature:62100-62234:-1:exon
so has part: feature:61560-61634:-1:exon
so has part: feature:60605-60756:-1:exon
so has part: feature:58720-58830:-1:exon
so has part: feature:58436-58514:-1:exon
so has part: feature:57929-58052:-1:exon
so has part: feature:57239-57338:-1:exon
so has part: feature:56424-56574:-1:exon
so has part: feature:55645-55804:-1:exon
so has part: feature:55007-55158:-1:exon
so has part: feature:51367-54416:-1:exon

position:80258:-1
position: 80258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80236-80258:-1:exon

position:80236:-1
position: 80236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:73345-73456:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:72025-72069:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:70796-70840:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:68031-68075:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:65350-65563:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:64978-65191:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:64825-64890:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:64614-64713:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:64132-64197:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:62926-63011:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:62408-62484:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:62100-62234:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:61560-61634:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:60605-60756:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:58720-58830:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:58436-58514:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:57929-58052:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:57239-57338:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:56424-56574:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:55645-55804:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:55007-55158:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:51367-54416:-1:exon

ARNT
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: ARNT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: aryl hydrocarbon receptor nuclear translocator isoform X9
translation: MAATAANPEMASDVSSLNAAVSSGNPGSGAQAGGAIVQRANKRRPGLDFDDDGEGNSKFLRCDDDPMPNDKERFARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVGKLREQLSTSENALTGRILDLKTGTVKKEGQQSMRMCMGSRRSFICRMRCGNSSVDPVSVNRLSFMRNRCRNGLGAAKDGEPHYVVVHCTGYIKAWPPAGVSLPDDDPDAGQGSKFCLVAIGRLQVTSSPNCTDMNNVCQPTEFISRHNTEGIFTFIDHRCVATVGYQPQELLGKDIVDFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNREWLWMRTSSFTFQNPYSDEIEYIICTNTNVKQQQPPQQTELEVVPGRESLSGYDHSQVPVQPVTAAGPEHSKPLEKAESLFNQERDPRFSEIYSSINTDQNKAIPASTVPANQPIFPQGNTFTPSRPAENFRSSSMVPPVNIIQQQPSSAGRILAQISRHSNPAQVSGTNWAPGTRPPFTPQQVASQTVKTRPPSFSMGAFQGTPSSFSPMTAPGSTASPSGTAYPNLASRGTGFTTEAAQTPTPFQTRATEGVGMWPQWQGQHHGPPSGEQHVQQPQPSQPEVFSDMLTMLGDQGPNYNNEEFPELNIFPSFSE
SIO_010081: ARNT
subclass of: SO_0000673
so part of: ARNT
location: complement(join(54327..54416,55007..55158,55645..55804,56424..56574,57239..57338,57929..58052,58436..58514,60605..60756,61560..61634,62100..62234,62408..62484,62926..63011,64132..64197,64614..64713,64978..65191,65350..65563,70796..70840,72025..72069,73345..73456,81112..81136))
location: region:54327-81136:-1
so has part: feature:81112-81136:-1:exon
so has part: feature:73345-73456:-1:exon
so has part: feature:72025-72069:-1:exon
so has part: feature:70796-70840:-1:exon
so has part: feature:65350-65563:-1:exon
so has part: feature:64978-65191:-1:exon
so has part: feature:64614-64713:-1:exon
so has part: feature:64132-64197:-1:exon
so has part: feature:62926-63011:-1:exon
so has part: feature:62408-62484:-1:exon
so has part: feature:62100-62234:-1:exon
so has part: feature:61560-61634:-1:exon
so has part: feature:60605-60756:-1:exon
so has part: feature:58436-58514:-1:exon
so has part: feature:57929-58052:-1:exon
so has part: feature:57239-57338:-1:exon
so has part: feature:56424-56574:-1:exon
so has part: feature:55645-55804:-1:exon
so has part: feature:55007-55158:-1:exon
so has part: feature:54327-54416:-1:exon

XP_040394657.1
type: Protein
SIO_000068: ncbiprotein

position:54327:-1
position: 54327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81136:-1
position: 81136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81112-81136:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:73345-73456:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:72025-72069:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:70796-70840:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:65350-65563:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:64978-65191:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:64614-64713:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:64132-64197:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:62926-63011:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:62408-62484:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:62100-62234:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:61560-61634:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:60605-60756:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:58436-58514:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:57929-58052:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:57239-57338:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:56424-56574:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:55645-55804:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:55007-55158:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:54327-54416:-1:exon

ARNT
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: ARNT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: aryl hydrocarbon receptor nuclear translocator isoform X6
translation: MAATAANPEMASDVSSLNAAVSSGNPGSGAQAGGAIVQRANKRRPGLDFDDDGEGNSKFLRCDDDPMPNDKERFARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVGKLREQLSTSENALTGRILDLKTGTVKKEGQQSMRMCMGSRRSFICRMRCGNSSVDPVSVNRLSFMRNRCRNGLGAAKDGEPHYVVVHCTGYIKAWPPAGVSLPDDDPDAGQGSKFCLVAIGRLQVTSSPNCTDMNNVCQPTEFISRHNTEGIFTFIDHRCVATVGYQPQELLGKDIVDFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNREWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQESRPALSNSMQRPQLGQSVSLPLEMGTAQLPSRQQQPPQQTELEVVPGRESLSGYDHSQVPVQPVTAAGPEHSKPLEKAESLFNQERDPRFSEIYSSINTDQNKAIPASTVPANQPIFPQGNTFTPSRPAENFRSSSMVPPVNIIQQQPSSAGRILAQISRHSNPAQVSGTNWAPGTRPPFTPQQVASQTVKTRPPSFSMGAFQGTPSSFSPMTAPGSTASPSGTAYPNLASRGTGFTTEAAQTPTPFQTRATEGVGMWPQWQGQHHGPPSGEQHVQQPQPSQPEVFSDMLTMLGDQGPNYNNEEFPELNIFPSFSE
SIO_010081: ARNT
subclass of: SO_0000673
so part of: ARNT
location: complement(join(54327..54416,55007..55158,55645..55804,56424..56574,57239..57338,57929..58052,58436..58514,58720..58830,60605..60756,61560..61634,62100..62234,62408..62484,62926..63011,64132..64197,64614..64713,64978..65191,65350..65563,70796..70840,72025..72069,73345..73456,81112..81136))
location: region:54327-81136:-1
so has part: feature:81112-81136:-1:exon
so has part: feature:73345-73456:-1:exon
so has part: feature:72025-72069:-1:exon
so has part: feature:70796-70840:-1:exon
so has part: feature:65350-65563:-1:exon
so has part: feature:64978-65191:-1:exon
so has part: feature:64614-64713:-1:exon
so has part: feature:64132-64197:-1:exon
so has part: feature:62926-63011:-1:exon
so has part: feature:62408-62484:-1:exon
so has part: feature:62100-62234:-1:exon
so has part: feature:61560-61634:-1:exon
so has part: feature:60605-60756:-1:exon
so has part: feature:58720-58830:-1:exon
so has part: feature:58436-58514:-1:exon
so has part: feature:57929-58052:-1:exon
so has part: feature:57239-57338:-1:exon
so has part: feature:56424-56574:-1:exon
so has part: feature:55645-55804:-1:exon
so has part: feature:55007-55158:-1:exon
so has part: feature:54327-54416:-1:exon

XP_040394654.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:81112-81136:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:73345-73456:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:72025-72069:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:70796-70840:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:65350-65563:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:64978-65191:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:64614-64713:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:64132-64197:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:62926-63011:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:62408-62484:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:62100-62234:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:61560-61634:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:60605-60756:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:58720-58830:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:58436-58514:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:57929-58052:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:57239-57338:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:56424-56574:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:55645-55804:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:55007-55158:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:54327-54416:-1:exon

ARNT
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: ARNT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: aryl hydrocarbon receptor nuclear translocator isoform X4
translation: MAATAANPEMASDVSSLNAAVSSGNPGSGAQAGGAIVQRANKRRPGLDFDDDGEGNSKFLRCDDDPMPNDKERFARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVGKLREQLSTSENALTEGTKPWCLSNKDPAAPPENASKGRILDLKTGTVKKEGQQSMRMCMGSRRSFICRMRCGNSSVDPVSVNRLSFMRNRCRNGLGAAKDGEPHYVVVHCTGYIKAWPPAGVSLPDDDPDAGQGSKFCLVAIGRLQVTSSPNCTDMNNVCQPTEFISRHNTEGIFTFIDHRCVATVGYQPQELLGKDIVDFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNREWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQESRPALSNSMQRPQLGQSVSLPLEMGTAQLPSRQQQPPQQTELEVVPGRESLSGYDHSQVPVQPVTAAGPEHSKPLEKAESLFNQERDPRFSEIYSSINTDQNKAIPASTVPANQPIFPQGNTFTPSRPAENFRSSSMVPPVNIIQQQPSSAGRILAQISRHSNPAQVSGTNWAPGTRPPFTPQQVASQTVKTRPPSFSMGAFQGTPSSFSPMTAPGSTASPSGTAYPNLASRGTGFTTEAAQTPTPFQTRATEGVGMWPQWQGQHHGPPSGEQHVQQPQPSQPEVFSDMLTMLGDQGPNYNNEEFPELNIFPSFSE
SIO_010081: ARNT
subclass of: SO_0000673
so part of: ARNT
location: complement(join(54327..54416,55007..55158,55645..55804,56424..56574,57239..57338,57929..58052,58436..58514,58720..58830,60605..60756,61560..61634,62100..62234,62408..62484,62926..63011,64132..64197,64614..64713,64825..64890,64978..65191,65350..65563,70796..70840,72025..72069,73345..73456,81112..81136))
location: region:54327-81136:-1
so has part: feature:81112-81136:-1:exon
so has part: feature:73345-73456:-1:exon
so has part: feature:72025-72069:-1:exon
so has part: feature:70796-70840:-1:exon
so has part: feature:65350-65563:-1:exon
so has part: feature:64978-65191:-1:exon
so has part: feature:64825-64890:-1:exon
so has part: feature:64614-64713:-1:exon
so has part: feature:64132-64197:-1:exon
so has part: feature:62926-63011:-1:exon
so has part: feature:62408-62484:-1:exon
so has part: feature:62100-62234:-1:exon
so has part: feature:61560-61634:-1:exon
so has part: feature:60605-60756:-1:exon
so has part: feature:58720-58830:-1:exon
so has part: feature:58436-58514:-1:exon
so has part: feature:57929-58052:-1:exon
so has part: feature:57239-57338:-1:exon
so has part: feature:56424-56574:-1:exon
so has part: feature:55645-55804:-1:exon
so has part: feature:55007-55158:-1:exon
so has part: feature:54327-54416:-1:exon

XP_040394652.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:81112-81136:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:73345-73456:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:72025-72069:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:70796-70840:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:65350-65563:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:64978-65191:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:64825-64890:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:64614-64713:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:64132-64197:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:62926-63011:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:62408-62484:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:62100-62234:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:61560-61634:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:60605-60756:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:58720-58830:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:58436-58514:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:57929-58052:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:57239-57338:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:56424-56574:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:55645-55804:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:55007-55158:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:54327-54416:-1:exon

ARNT
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: ARNT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: aryl hydrocarbon receptor nuclear translocator isoform X8
translation: MAATAANPEMASDVSSLNAAVSSGNPGSGAQAGGAIVQRANKRRPGLDFDDDGEGNSKFLRCDDDPMPNDKERFARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVGKLREQLSTSENALTGRILDLKTGTVKKEGQQSMRMCMGSRRSFICRMRCGNSSVDPVSVNRLSFMRNRCRNGLGAAKDGEPHYVVVHCTGYIKAWPPAGVSLPDDDPDAGQGSKFCLVAIGRLQVTSSPNCTDMNNVCQPTEFISRHNTEGIFTFIDHRCVATVGYQPQELLGKDIVDFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNREWLWMRTSSFTFQNPYSDEIEYIICTNTNVKQQQPPQQTELEVVPGRESLSGYDHSQVPVQPVTAAGPEHSKPLEKAESLFNQERDPRFSEIYSSINTDQNKAIPASTVPANQPIFPQGNTFTPSRPAENFRSSSMVPPVNIIQQQPSSAGRILAQISRHSNPAQVSGTNWAPGTRPPFTPQQVASQTVKTRPPSFSMGAFQGTPSSFSPMTAPGSTASPSGTAYPNLASRGTGFTTEAAQTPTPFQTRATEGVGMWPQWQGQHHGPPSGEQHVQQPQPSQPEVFSDMLTMLGDQGPNYNNEEFPELNIFPSFSE
SIO_010081: ARNT
subclass of: SO_0000673
so part of: ARNT
location: complement(join(54327..54416,55007..55158,55645..55804,56424..56574,57239..57338,57929..58052,58436..58514,60605..60756,61560..61634,62100..62234,62408..62484,62926..63011,64132..64197,64614..64713,64978..65191,65350..65563,68031..68075,70796..70840,72025..72069,73345..73456,81112..81136))
location: region:54327-81136:-1
so has part: feature:81112-81136:-1:exon
so has part: feature:73345-73456:-1:exon
so has part: feature:72025-72069:-1:exon
so has part: feature:70796-70840:-1:exon
so has part: feature:68031-68075:-1:exon
so has part: feature:65350-65563:-1:exon
so has part: feature:64978-65191:-1:exon
so has part: feature:64614-64713:-1:exon
so has part: feature:64132-64197:-1:exon
so has part: feature:62926-63011:-1:exon
so has part: feature:62408-62484:-1:exon
so has part: feature:62100-62234:-1:exon
so has part: feature:61560-61634:-1:exon
so has part: feature:60605-60756:-1:exon
so has part: feature:58436-58514:-1:exon
so has part: feature:57929-58052:-1:exon
so has part: feature:57239-57338:-1:exon
so has part: feature:56424-56574:-1:exon
so has part: feature:55645-55804:-1:exon
so has part: feature:55007-55158:-1:exon
so has part: feature:54327-54416:-1:exon

XP_040394656.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:81112-81136:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:73345-73456:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:72025-72069:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:70796-70840:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:68031-68075:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:65350-65563:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:64978-65191:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:64614-64713:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:64132-64197:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:62926-63011:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:62408-62484:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:62100-62234:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:61560-61634:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:60605-60756:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:58436-58514:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:57929-58052:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:57239-57338:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:56424-56574:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:55645-55804:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:55007-55158:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:54327-54416:-1:exon

ARNT
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: ARNT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: aryl hydrocarbon receptor nuclear translocator isoform X5
translation: MAATAANPEMASDVSSLNAAVSSGNPGSGAQAGGAIVQRANKRRPGLDFDDDGEGNSKFLRCDDDPMPNDKERFARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVGKLREQLSTSENALTGRILDLKTGTVKKEGQQSMRMCMGSRRSFICRMRCGNSSVDPVSVNRLSFMRNRCRNGLGAAKDGEPHYVVVHCTGYIKAWPPAGVSLPDDDPDAGQGSKFCLVAIGRLQVTSSPNCTDMNNVCQPTEFISRHNTEGIFTFIDHRCVATVGYQPQELLGKDIVDFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNREWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQESRPALSNSMQRPQLGQSVSLPLEMGTAQLPSRQQQPPQQTELEVVPGRESLSGYDHSQVPVQPVTAAGPEHSKPLEKAESLFNQERDPRFSEIYSSINTDQNKAIPASTVPANQPIFPQGNTFTPSRPAENFRSSSMVPPVNIIQQQPSSAGRILAQISRHSNPAQVSGTNWAPGTRPPFTPQQVASQTVKTRPPSFSMGAFQGTPSSFSPMTAPGSTASPSGTAYPNLASRGTGFTTEAAQTPTPFQTRATEGVGMWPQWQGQHHGPPSGEQHVQQPQPSQPEVFSDMLTMLGDQGPNYNNEEFPELNIFPSFSE
SIO_010081: ARNT
subclass of: SO_0000673
so part of: ARNT
location: complement(join(54327..54416,55007..55158,55645..55804,56424..56574,57239..57338,57929..58052,58436..58514,58720..58830,60605..60756,61560..61634,62100..62234,62408..62484,62926..63011,64132..64197,64614..64713,64978..65191,65350..65563,68031..68075,70796..70840,72025..72069,73345..73456,81112..81136))
location: region:54327-81136:-1
so has part: feature:81112-81136:-1:exon
so has part: feature:73345-73456:-1:exon
so has part: feature:72025-72069:-1:exon
so has part: feature:70796-70840:-1:exon
so has part: feature:68031-68075:-1:exon
so has part: feature:65350-65563:-1:exon
so has part: feature:64978-65191:-1:exon
so has part: feature:64614-64713:-1:exon
so has part: feature:64132-64197:-1:exon
so has part: feature:62926-63011:-1:exon
so has part: feature:62408-62484:-1:exon
so has part: feature:62100-62234:-1:exon
so has part: feature:61560-61634:-1:exon
so has part: feature:60605-60756:-1:exon
so has part: feature:58720-58830:-1:exon
so has part: feature:58436-58514:-1:exon
so has part: feature:57929-58052:-1:exon
so has part: feature:57239-57338:-1:exon
so has part: feature:56424-56574:-1:exon
so has part: feature:55645-55804:-1:exon
so has part: feature:55007-55158:-1:exon
so has part: feature:54327-54416:-1:exon

XP_040394653.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:81112-81136:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:73345-73456:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:72025-72069:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:70796-70840:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:68031-68075:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:65350-65563:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:64978-65191:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:64614-64713:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:64132-64197:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:62926-63011:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:62408-62484:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:62100-62234:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:61560-61634:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:60605-60756:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:58720-58830:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:58436-58514:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:57929-58052:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:57239-57338:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:56424-56574:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:55645-55804:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:55007-55158:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:54327-54416:-1:exon

ARNT
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: ARNT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: aryl hydrocarbon receptor nuclear translocator isoform X7
translation: MAATAANPEMASDVSSLNAAVSSGNPGSGAQAGGAIVQRANKRRPGLDFDDDGEGNSKFLRCDDDPMPNDKERFARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVGKLREQLSTSENALTEGTKPWCLSNKDPAAPPENASKGRILDLKTGTVKKEGQQSMRMCMGSRRSFICRMRCGNSSVDPVSVNRLSFMRNRCRNGLGAAKDGEPHYVVVHCTGYIKAWPPAGVSLPDDDPDAGQGSKFCLVAIGRLQVTSSPNCTDMNNVCQPTEFISRHNTEGIFTFIDHRCVATVGYQPQELLGKDIVDFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNREWLWMRTSSFTFQNPYSDEIEYIICTNTNVKQQQPPQQTELEVVPGRESLSGYDHSQVPVQPVTAAGPEHSKPLEKAESLFNQERDPRFSEIYSSINTDQNKAIPASTVPANQPIFPQGNTFTPSRPAENFRSSSMVPPVNIIQQQPSSAGRILAQISRHSNPAQVSGTNWAPGTRPPFTPQQVASQTVKTRPPSFSMGAFQGTPSSFSPMTAPGSTASPSGTAYPNLASRGTGFTTEAAQTPTPFQTRATEGVGMWPQWQGQHHGPPSGEQHVQQPQPSQPEVFSDMLTMLGDQGPNYNNEEFPELNIFPSFSE
SIO_010081: ARNT
subclass of: SO_0000673
so part of: ARNT
location: complement(join(54327..54416,55007..55158,55645..55804,56424..56574,57239..57338,57929..58052,58436..58514,60605..60756,61560..61634,62100..62234,62408..62484,62926..63011,64132..64197,64614..64713,64825..64890,64978..65191,65350..65563,68031..68075,70796..70840,72025..72069,73345..73456,81112..81136))
location: region:54327-81136:-1
so has part: feature:81112-81136:-1:exon
so has part: feature:73345-73456:-1:exon
so has part: feature:72025-72069:-1:exon
so has part: feature:70796-70840:-1:exon
so has part: feature:68031-68075:-1:exon
so has part: feature:65350-65563:-1:exon
so has part: feature:64978-65191:-1:exon
so has part: feature:64825-64890:-1:exon
so has part: feature:64614-64713:-1:exon
so has part: feature:64132-64197:-1:exon
so has part: feature:62926-63011:-1:exon
so has part: feature:62408-62484:-1:exon
so has part: feature:62100-62234:-1:exon
so has part: feature:61560-61634:-1:exon
so has part: feature:60605-60756:-1:exon
so has part: feature:58436-58514:-1:exon
so has part: feature:57929-58052:-1:exon
so has part: feature:57239-57338:-1:exon
so has part: feature:56424-56574:-1:exon
so has part: feature:55645-55804:-1:exon
so has part: feature:55007-55158:-1:exon
so has part: feature:54327-54416:-1:exon

XP_040394655.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:81112-81136:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:73345-73456:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:72025-72069:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:70796-70840:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:68031-68075:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:65350-65563:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:64978-65191:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:64825-64890:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:64614-64713:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:64132-64197:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:62926-63011:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:62408-62484:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:62100-62234:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:61560-61634:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:60605-60756:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:58436-58514:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:57929-58052:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:57239-57338:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:56424-56574:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:55645-55804:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:55007-55158:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:54327-54416:-1:exon

ARNT
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: ARNT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: aryl hydrocarbon receptor nuclear translocator isoform X2
translation: MAATAANPEMASDVSSLNAAVSSGNPGSGAQAGGAIVQRANKRRPGLDFDDDGEGNSKFLRCDDDPMPNDKERFARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVGKLREQLSTSENALTEGTKPWCLSNKDPAAPPENASKGRILDLKTGTVKKEGQQSMRMCMGSRRSFICRMRCGNSSVDPVSVNRLSFMRNRCRNGLGAAKDGEPHYVVVHCTGYIKAWPPAGVSLPDDDPDAGQGSKFCLVAIGRLQVTSSPNCTDMNNVCQPTEFISRHNTEGIFTFIDHRCVATVGYQPQELLGKDIVDFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNREWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQESRPALSNSMQRPQLGQSVSLPLEMGTAQLPSRQQQPPQQTELEVVPGRESLSGYDHSQVPVQPVTAAGPEHSKPLEKAESLFNQERDPRFSEIYSSINTDQNKAIPASTVPANQPIFPQGNTFTPSRPAENFRSSSMVPPVNIIQQQPSSAGRILAQISRHSNPAQVSGTNWAPGTRPPFTPQQVASQTVKTRPPSFSMGAFQGTPSSFSPMTAPGSTASPSGTAYPNLASRGTGFTTEAAQTPTPFQTRATEGVGMWPQWQGQHHGPPSGEQHVQQPQPSQPEDMLTMLGDQGPNYNNEEFPELNIFPSFSE
SIO_010081: ARNT
subclass of: SO_0000673
so part of: ARNT
location: complement(join(54327..54416,55016..55158,55645..55804,56424..56574,57239..57338,57929..58052,58436..58514,58720..58830,60605..60756,61560..61634,62100..62234,62408..62484,62926..63011,64132..64197,64614..64713,64825..64890,64978..65191,65350..65563,68031..68075,70796..70840,72025..72069,73345..73456,81112..81136))
location: region:54327-81136:-1
so has part: feature:81112-81136:-1:exon
so has part: feature:73345-73456:-1:exon
so has part: feature:72025-72069:-1:exon
so has part: feature:70796-70840:-1:exon
so has part: feature:68031-68075:-1:exon
so has part: feature:65350-65563:-1:exon
so has part: feature:64978-65191:-1:exon
so has part: feature:64825-64890:-1:exon
so has part: feature:64614-64713:-1:exon
so has part: feature:64132-64197:-1:exon
so has part: feature:62926-63011:-1:exon
so has part: feature:62408-62484:-1:exon
so has part: feature:62100-62234:-1:exon
so has part: feature:61560-61634:-1:exon
so has part: feature:60605-60756:-1:exon
so has part: feature:58720-58830:-1:exon
so has part: feature:58436-58514:-1:exon
so has part: feature:57929-58052:-1:exon
so has part: feature:57239-57338:-1:exon
so has part: feature:56424-56574:-1:exon
so has part: feature:55645-55804:-1:exon
so has part: feature:55016-55158:-1:exon
so has part: feature:54327-54416:-1:exon

XP_040394649.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:81112-81136:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:73345-73456:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:72025-72069:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:70796-70840:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:68031-68075:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:65350-65563:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:64978-65191:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:64825-64890:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:64614-64713:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:64132-64197:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:62926-63011:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:62408-62484:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:62100-62234:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:61560-61634:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:60605-60756:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:58720-58830:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:58436-58514:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:57929-58052:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:57239-57338:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:56424-56574:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:55645-55804:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:55016-55158:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:54327-54416:-1:exon

ARNT
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: ARNT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: aryl hydrocarbon receptor nuclear translocator isoform X1
translation: MAATAANPEMASDVSSLNAAVSSGNPGSGAQAGGAIVQRANKRRPGLDFDDDGEGNSKFLRCDDDPMPNDKERFARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVGKLREQLSTSENALTEGTKPWCLSNKDPAAPPENASKGRILDLKTGTVKKEGQQSMRMCMGSRRSFICRMRCGNSSVDPVSVNRLSFMRNRCRNGLGAAKDGEPHYVVVHCTGYIKAWPPAGVSLPDDDPDAGQGSKFCLVAIGRLQVTSSPNCTDMNNVCQPTEFISRHNTEGIFTFIDHRCVATVGYQPQELLGKDIVDFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNREWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQESRPALSNSMQRPQLGQSVSLPLEMGTAQLPSRQQQPPQQTELEVVPGRESLSGYDHSQVPVQPVTAAGPEHSKPLEKAESLFNQERDPRFSEIYSSINTDQNKAIPASTVPANQPIFPQGNTFTPSRPAENFRSSSMVPPVNIIQQQPSSAGRILAQISRHSNPAQVSGTNWAPGTRPPFTPQQVASQTVKTRPPSFSMGAFQGTPSSFSPMTAPGSTASPSGTAYPNLASRGTGFTTEAAQTPTPFQTRATEGVGMWPQWQGQHHGPPSGEQHVQQPQPSQPEVFSDMLTMLGDQGPNYNNEEFPELNIFPSFSE
SIO_010081: ARNT
subclass of: SO_0000673
so part of: ARNT
location: complement(join(54327..54416,55007..55158,55645..55804,56424..56574,57239..57338,57929..58052,58436..58514,58720..58830,60605..60756,61560..61634,62100..62234,62408..62484,62926..63011,64132..64197,64614..64713,64825..64890,64978..65191,65350..65563,68031..68075,70796..70840,72025..72069,73345..73456,81112..81136))
location: region:54327-81136:-1
so has part: feature:81112-81136:-1:exon
so has part: feature:73345-73456:-1:exon
so has part: feature:72025-72069:-1:exon
so has part: feature:70796-70840:-1:exon
so has part: feature:68031-68075:-1:exon
so has part: feature:65350-65563:-1:exon
so has part: feature:64978-65191:-1:exon
so has part: feature:64825-64890:-1:exon
so has part: feature:64614-64713:-1:exon
so has part: feature:64132-64197:-1:exon
so has part: feature:62926-63011:-1:exon
so has part: feature:62408-62484:-1:exon
so has part: feature:62100-62234:-1:exon
so has part: feature:61560-61634:-1:exon
so has part: feature:60605-60756:-1:exon
so has part: feature:58720-58830:-1:exon
so has part: feature:58436-58514:-1:exon
so has part: feature:57929-58052:-1:exon
so has part: feature:57239-57338:-1:exon
so has part: feature:56424-56574:-1:exon
so has part: feature:55645-55804:-1:exon
so has part: feature:55007-55158:-1:exon
so has part: feature:54327-54416:-1:exon

XP_040394648.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:81112-81136:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:73345-73456:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:72025-72069:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:70796-70840:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:68031-68075:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:65350-65563:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:64978-65191:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:64825-64890:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:64614-64713:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:64132-64197:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:62926-63011:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:62408-62484:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:62100-62234:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:61560-61634:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:60605-60756:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:58720-58830:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:58436-58514:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:57929-58052:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:57239-57338:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:56424-56574:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:55645-55804:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:55007-55158:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:54327-54416:-1:exon

ARNT
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: ARNT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: aryl hydrocarbon receptor nuclear translocator isoform X3
translation: MASDVSSLNAAVSSGNPGSGAQAGGAIVQRANKRRPGLDFDDDGEGNSKFLRCDDDPMPNDKERFARSDDEQSSADKERLARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTGNTSTDGTYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVGKLREQLSTSENALTEGTKPWCLSNKDPAAPPENASKGRILDLKTGTVKKEGQQSMRMCMGSRRSFICRMRCGNSSVDPVSVNRLSFMRNRCRNGLGAAKDGEPHYVVVHCTGYIKAWPPAGVSLPDDDPDAGQGSKFCLVAIGRLQVTSSPNCTDMNNVCQPTEFISRHNTEGIFTFIDHRCVATVGYQPQELLGKDIVDFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNREWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQESRPALSNSMQRPQLGQSVSLPLEMGTAQLPSRQQQPPQQTELEVVPGRESLSGYDHSQVPVQPVTAAGPEHSKPLEKAESLFNQERDPRFSEIYSSINTDQNKAIPASTVPANQPIFPQGNTFTPSRPAENFRSSSMVPPVNIIQQQPSSAGRILAQISRHSNPAQVSGTNWAPGTRPPFTPQQVASQTVKTRPPSFSMGAFQGTPSSFSPMTAPGSTASPSGTAYPNLASRGTGFTTEAAQTPTPFQTRATEGVGMWPQWQGQHHGPPSGEQHVQQPQPSQPEVFSDMLTMLGDQGPNYNNEEFPELNIFPSFSE
SIO_010081: ARNT
subclass of: SO_0000673
so part of: ARNT
location: complement(join(54327..54416,55007..55158,55645..55804,56424..56574,57239..57338,57929..58052,58436..58514,58720..58830,60605..60756,61560..61634,62100..62234,62408..62484,62926..63011,64132..64197,64614..64713,64825..64890,64978..65191,65350..65563,68031..68075,70796..70840,72025..72069,73345..73454))
location: region:54327-73454:-1
so has part: feature:73345-73454:-1:exon
so has part: feature:72025-72069:-1:exon
so has part: feature:70796-70840:-1:exon
so has part: feature:68031-68075:-1:exon
so has part: feature:65350-65563:-1:exon
so has part: feature:64978-65191:-1:exon
so has part: feature:64825-64890:-1:exon
so has part: feature:64614-64713:-1:exon
so has part: feature:64132-64197:-1:exon
so has part: feature:62926-63011:-1:exon
so has part: feature:62408-62484:-1:exon
so has part: feature:62100-62234:-1:exon
so has part: feature:61560-61634:-1:exon
so has part: feature:60605-60756:-1:exon
so has part: feature:58720-58830:-1:exon
so has part: feature:58436-58514:-1:exon
so has part: feature:57929-58052:-1:exon
so has part: feature:57239-57338:-1:exon
so has part: feature:56424-56574:-1:exon
so has part: feature:55645-55804:-1:exon
so has part: feature:55007-55158:-1:exon
so has part: feature:54327-54416:-1:exon

XP_040394650.1
type: Protein
SIO_000068: ncbiprotein

position:73454:-1
position: 73454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73345-73454:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:72025-72069:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:70796-70840:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:68031-68075:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:65350-65563:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:64978-65191:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:64825-64890:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:64614-64713:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:64132-64197:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:62926-63011:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:62408-62484:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:62100-62234:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:61560-61634:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:60605-60756:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:58720-58830:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:58436-58514:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:57929-58052:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:57239-57338:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:56424-56574:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:55645-55804:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:55007-55158:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:54327-54416:-1:exon

LOC121060708
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: LOC121060708
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(82042..84069)
location: region:82042-84069:-1
so has part: feature:82042-84069:-1:exon
subclass of: SO_0000011

121060708
type: Gene
SIO_000068: ncbigene

position:82042:-1
position: 82042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:84069:-1
position: 84069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82042-84069:-1:exon

LOC121060708
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 8869
nc RNA class: lncRNA
gene: LOC121060708
product: uncharacterized LOC121060708, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_005814907.1
SIO_010081: LOC121060708
subclass of: SO_0000673
so part of: LOC121060708
location: complement(join(82042..82729,82841..83058,83947..84069))
location: region:82042-84069:-1
so has part: feature:83947-84069:-1:exon
so has part: feature:82841-83058:-1:exon
so has part: feature:82042-82729:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:83947-84069:-1:exon

position:83947:-1
position: 83947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:82841-83058:-1:exon

position:82841:-1
position: 82841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:83058:-1
position: 83058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:82042-82729:-1:exon

position:82729:-1
position: 82729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121060708
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 8869
nc RNA class: lncRNA
gene: LOC121060708
product: uncharacterized LOC121060708, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_005814908.1
SIO_010081: LOC121060708
subclass of: SO_0000673
so part of: LOC121060708
location: complement(join(82042..82729,82841..83058,83141..83315))
location: region:82042-83315:-1
so has part: feature:83141-83315:-1:exon
so has part: feature:82841-83058:-1:exon
so has part: feature:82042-82729:-1:exon

position:83315:-1
position: 83315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83141-83315:-1:exon

position:83141:-1
position: 83141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:82841-83058:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:82042-82729:-1:exon

SETDB1
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: SETDB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 82864..102067
location: region:82864-102067:1
so has part: feature:82864-102067:1:exon
subclass of: SO_0000010

121060706
type: Gene
SIO_000068: ncbigene

position:82864:1
position: 82864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:102067:1
position: 102067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82864-102067:1:exon

SETDB1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: SETDB1
product: SET domain bifurcated histone lysine methyltransferase 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_040538732.1
SIO_010081: SETDB1
subclass of: SO_0000673
so part of: SETDB1
location: join(82864..83087,84260..84484,84834..85006,85526..85563,85700..85799,86226..86393,86704..86905,88171..88244,88603..88793,89688..89817,90170..90308,92834..92992,93702..94304,94853..94969,95315..95484,96398..97014,97681..97709,97990..98164,98811..98973,99470..99681,100501..100589,101219..102067)
location: region:82864-102067:1
so has part: feature:82864-83087:1:exon
so has part: feature:84260-84484:1:exon
so has part: feature:84834-85006:1:exon
so has part: feature:85526-85563:1:exon
so has part: feature:85700-85799:1:exon
so has part: feature:86226-86393:1:exon
so has part: feature:86704-86905:1:exon
so has part: feature:88171-88244:1:exon
so has part: feature:88603-88793:1:exon
so has part: feature:89688-89817:1:exon
so has part: feature:90170-90308:1:exon
so has part: feature:92834-92992:1:exon
so has part: feature:93702-94304:1:exon
so has part: feature:94853-94969:1:exon
so has part: feature:95315-95484:1:exon
so has part: feature:96398-97014:1:exon
so has part: feature:97681-97709:1:exon
so has part: feature:97990-98164:1:exon
so has part: feature:98811-98973:1:exon
so has part: feature:99470-99681:1:exon
so has part: feature:100501-100589:1:exon
so has part: feature:101219-102067:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:82864-83087:1:exon

position:83087:1
position: 83087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:84260-84484:1:exon

position:84260:1
position: 84260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:84484:1
position: 84484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:84834-85006:1:exon

position:84834:1
position: 84834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:85006:1
position: 85006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:85526-85563:1:exon

position:85526:1
position: 85526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:85563:1
position: 85563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:85700-85799:1:exon

position:85700:1
position: 85700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:85799:1
position: 85799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:86226-86393:1:exon

position:86226:1
position: 86226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:86393:1
position: 86393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:86704-86905:1:exon

position:86704:1
position: 86704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:86905:1
position: 86905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:88171-88244:1:exon

position:88171:1
position: 88171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:88244:1
position: 88244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:88603-88793:1:exon

position:88603:1
position: 88603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:88793:1
position: 88793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:89688-89817:1:exon

position:89688:1
position: 89688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:89817:1
position: 89817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:90170-90308:1:exon

position:90170:1
position: 90170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:90308:1
position: 90308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:92834-92992:1:exon

position:92834:1
position: 92834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:92992:1
position: 92992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:93702-94304:1:exon

position:93702:1
position: 93702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:94304:1
position: 94304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:94853-94969:1:exon

position:94853:1
position: 94853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:94969:1
position: 94969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:95315-95484:1:exon

position:95315:1
position: 95315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:95484:1
position: 95484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:96398-97014:1:exon

position:96398:1
position: 96398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:97014:1
position: 97014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:97681-97709:1:exon

position:97681:1
position: 97681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:97709:1
position: 97709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:97990-98164:1:exon

position:97990:1
position: 97990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:98164:1
position: 98164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:98811-98973:1:exon

position:98811:1
position: 98811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:98973:1
position: 98973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:99470-99681:1:exon

position:99470:1
position: 99470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:99681:1
position: 99681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:100501-100589:1:exon

position:100501:1
position: 100501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:100589:1
position: 100589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:101219-102067:1:exon

position:101219:1
position: 101219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SETDB1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: SETDB1
product: SET domain bifurcated histone lysine methyltransferase 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 long SRA reads, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_040538734.1
SIO_010081: SETDB1
subclass of: SO_0000673
so part of: SETDB1
location: join(82864..83087,84260..84484,84834..85006,85526..85563,85700..85799,86226..86393,86704..86905,88171..88244,88603..88793,89688..89817,90170..90308,92834..92992,93702..94304,94853..94969,95315..95484,96398..97014,97681..97709,97990..98122,98811..98973,99470..99681,100501..100589,101219..102067)
location: region:82864-102067:1
so has part: feature:82864-83087:1:exon
so has part: feature:84260-84484:1:exon
so has part: feature:84834-85006:1:exon
so has part: feature:85526-85563:1:exon
so has part: feature:85700-85799:1:exon
so has part: feature:86226-86393:1:exon
so has part: feature:86704-86905:1:exon
so has part: feature:88171-88244:1:exon
so has part: feature:88603-88793:1:exon
so has part: feature:89688-89817:1:exon
so has part: feature:90170-90308:1:exon
so has part: feature:92834-92992:1:exon
so has part: feature:93702-94304:1:exon
so has part: feature:94853-94969:1:exon
so has part: feature:95315-95484:1:exon
so has part: feature:96398-97014:1:exon
so has part: feature:97681-97709:1:exon
so has part: feature:97990-98122:1:exon
so has part: feature:98811-98973:1:exon
so has part: feature:99470-99681:1:exon
so has part: feature:100501-100589:1:exon
so has part: feature:101219-102067:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:82864-83087:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:84260-84484:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:84834-85006:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:85526-85563:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:85700-85799:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:86226-86393:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:86704-86905:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:88171-88244:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:88603-88793:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:89688-89817:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:90170-90308:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:92834-92992:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:93702-94304:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:94853-94969:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:95315-95484:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:96398-97014:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:97681-97709:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:97990-98122:1:exon

position:98122:1
position: 98122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:98811-98973:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:99470-99681:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:100501-100589:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:101219-102067:1:exon

SETDB1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: SETDB1
product: SET domain bifurcated histone lysine methyltransferase 1, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_040538737.1
SIO_010081: SETDB1
subclass of: SO_0000673
so part of: SETDB1
location: join(82864..83087,84260..84484,84834..85006,85526..85563,85700..85799,86226..86393,86704..86905,88171..88244,88603..88793,89688..89817,90170..90308,90669..92774)
location: region:82864-92774:1
so has part: feature:82864-83087:1:exon
so has part: feature:84260-84484:1:exon
so has part: feature:84834-85006:1:exon
so has part: feature:85526-85563:1:exon
so has part: feature:85700-85799:1:exon
so has part: feature:86226-86393:1:exon
so has part: feature:86704-86905:1:exon
so has part: feature:88171-88244:1:exon
so has part: feature:88603-88793:1:exon
so has part: feature:89688-89817:1:exon
so has part: feature:90170-90308:1:exon
so has part: feature:90669-92774:1:exon

position:92774:1
position: 92774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82864-83087:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:84260-84484:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:84834-85006:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:85526-85563:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:85700-85799:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:86226-86393:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:86704-86905:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:88171-88244:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:88603-88793:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:89688-89817:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:90170-90308:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:90669-92774:1:exon

position:90669:1
position: 90669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SETDB1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: SETDB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone-lysine N-methyltransferase SETDB1 isoform X1
translation: MRQARRGPLQRLLGLHLGRGVDQLSRCAAEMDSQEIKELQQEVMEELGISMEELQDIIDEELEKFECVKQRKQQLEELEKCVKQKEEEVAHVDRLFDDASRAIDKCEILVKDLYSKLGLQYRESSSEDEDLAAKPTEVIEIPDEDDDDVMSIDLGWKNSDTNPKIVKDQTLLREAMAAMRKSAQDVQKFMDAVNKKTNAQDALKDAQTPQQTPATLQSVGPAAAGSDLSNDGDLNIGMRILGKKRTKTWHKGTLIAIQSVGAGKKYKVKFDNKGKSLLSGNHIAYDYHPSPEKHYVGSRVVAKYKDGNQVWLYAGIVAETPNMKNKDRFLIFFDDGYASYVKEWELYPICRPLKKTWEDIEDVSCRDFIEEYITAYPNRPMVLLKNGQLIKTEWEGTWWKSRVEEVDGSLVKILFLDDKRCEWIYRGSTRLEPMFSMKTSTASTQEKKQSGQARTRPNVGAVRSKGPVVQYTQDLTGAGTQYKPLEQMQAASLAARSISPQPAEMECSDSQLAQSRKQVAKKSTSFRPGSVGSGQSSPSSPVLSDTPPAGRTGASQQHRFSSGQAGTGTAQTFHGMMDRVPNEPSYRAPLEKLFYLPHVCSYTCLSRVRPIRSDQYRSKNPLLIPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTMQEIERYLFETDCDFLFLEMFCLDPYVLVDRKFQPYKPYYYIADITKGREDVPLSCVNEIDNTPPPQVAYSKERIPGKGVYINTSWEFLVGCDCKDGCRDKSKCACHQLTVQATGCTPGGQINPNSGYQHKRLEECLPTGVYECNKRCKCNINMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYESDAKCSSDSSGVDLKEEEEENTGTEEQEESNEDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQKENGLSETASKDSGLTRQISHDEIAVAASCKLPVSEETSKNKVASWLSSNSMSDGFQDNDSASSFKMSEGGEVKACKTDLPVEREKASAPVLGDVDGESKALKKDEPEDSSKFPGLSDLGRMYGYNPSPPKLEGIRRPTSKTALLQSRRHSVPLQPTTEVSADPSSFRHGLQGDVLTLSSSTDSEGENGQTAAGQAQGTTNDSDDIQTISSGSEEEEGDDKKNPSGSGPVKRQVAVKSTRGFALKSTHGIAIKSTNMAVADKGESVPVRRTTRQFYDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSVEGKELLCCCGAIECRGRLL
SIO_010081: SETDB1
subclass of: SO_0000673
so part of: SETDB1
location: join(83011..83087,84260..84484,84834..85006,85526..85563,85700..85799,86226..86393,86704..86905,88171..88244,88603..88793,89688..89817,90170..90308,92834..92992,93702..94304,94853..94969,95315..95484,96398..97014,97681..97709,97990..98164,98811..98973,99470..99681,100501..100589,101219..101336)
location: region:83011-101336:1
so has part: feature:83011-83087:1:exon
so has part: feature:84260-84484:1:exon
so has part: feature:84834-85006:1:exon
so has part: feature:85526-85563:1:exon
so has part: feature:85700-85799:1:exon
so has part: feature:86226-86393:1:exon
so has part: feature:86704-86905:1:exon
so has part: feature:88171-88244:1:exon
so has part: feature:88603-88793:1:exon
so has part: feature:89688-89817:1:exon
so has part: feature:90170-90308:1:exon
so has part: feature:92834-92992:1:exon
so has part: feature:93702-94304:1:exon
so has part: feature:94853-94969:1:exon
so has part: feature:95315-95484:1:exon
so has part: feature:96398-97014:1:exon
so has part: feature:97681-97709:1:exon
so has part: feature:97990-98164:1:exon
so has part: feature:98811-98973:1:exon
so has part: feature:99470-99681:1:exon
so has part: feature:100501-100589:1:exon
so has part: feature:101219-101336:1:exon

XP_040394666.1
type: Protein
SIO_000068: ncbiprotein

position:83011:1
position: 83011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:101336:1
position: 101336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83011-83087:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:84260-84484:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:84834-85006:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:85526-85563:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:85700-85799:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:86226-86393:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:86704-86905:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:88171-88244:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:88603-88793:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:89688-89817:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:90170-90308:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:92834-92992:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:93702-94304:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:94853-94969:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:95315-95484:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:96398-97014:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:97681-97709:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:97990-98164:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:98811-98973:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:99470-99681:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:100501-100589:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:101219-101336:1:exon

SETDB1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: SETDB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone-lysine N-methyltransferase SETDB1 isoform X3
translation: MRQARRGPLQRLLGLHLGRGVDQLSRCAAEMDSQEIKELQQEVMEELGISMEELQDIIDEELEKFECVKQRKQQLEELEKCVKQKEEEVAHVDRLFDDASRAIDKCEILVKDLYSKLGLQYRESSSEDEDLAAKPTEVIEIPDEDDDDVMSIDLGWKNSDTNPKIVKDQTLLREAMAAMRKSAQDVQKFMDAVNKKTNAQDALKDAQTPQQTPATLQSVGPAAAGSDLSNDGDLNIGMRILGKKRTKTWHKGTLIAIQSVGAGKKYKVKFDNKGKSLLSGNHIAYDYHPSPEKHYVGSRVVAKYKDGNQVWLYAGIVAETPNMKNKDRFLIFFDDGYASYVKEWELYPICRPLKKTWEDIEDVSCRDFIEEYITAYPNRPMVLLKNGQLIKTEWEGTWWKSRVEEVDGSLVKILFLDDKRCEWIYRGSTRLEPMFSMKTSTASTQEKKQSGQARTRPNVGAVRSKGPVVQYTQDLTGAGTQYKPLEQMQAASLAARSISPQPAEMECSDSQLAQSRKQVAKKSTSFRPGSVGSGQSSPSSPVLSDTPPAGRTGASQQHRFSSGQAGTGTAQTFHGMMDRVPNEPSYRAPLEKLFYLPHVCSYTCLSRVRPIRSDQYRSKNPLLIPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTMQEIERYLFETDCDFLFLEMFCLDPYVLVDRKFQPYKPYYYIADITKGREDVPLSCVNEIDNTPPPQVAYSKERIPGKGVYINTSWEFLVGCDCKDGCRDKSKCACHQLTVQATGCTPGGQINPNSGYQHKRLEECLPTGVYECNKRCKCNINMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYESDAKCSSDSSGVDLKEEEEENTGTEEQEESNEDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQKENGLSETASKDSGLTRQISHDEIAVAASCKLPVSEETSKNKVASWLSSNSMSDGFQDNDSASSFKMSEGGEVKACKTDLPVEREKASAPVLGDVDGESKALKKDEPEDSSKFPGLSDLGRMYGYNPSPPKLEGIRRPTSKTALLQSRRHSVPLQPTTEDVLTLSSSTDSEGENGQTAAGQAQGTTNDSDDIQTISSGSEEEEGDDKKNPSGSGPVKRQVAVKSTRGFALKSTHGIAIKSTNMAVADKGESVPVRRTTRQFYDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSVEGKELLCCCGAIECRGRLL
SIO_010081: SETDB1
subclass of: SO_0000673
so part of: SETDB1
location: join(83011..83087,84260..84484,84834..85006,85526..85563,85700..85799,86226..86393,86704..86905,88171..88244,88603..88793,89688..89817,90170..90308,92834..92992,93702..94304,94853..94969,95315..95484,96398..97014,97681..97709,97990..98122,98811..98973,99470..99681,100501..100589,101219..101336)
location: region:83011-101336:1
so has part: feature:83011-83087:1:exon
so has part: feature:84260-84484:1:exon
so has part: feature:84834-85006:1:exon
so has part: feature:85526-85563:1:exon
so has part: feature:85700-85799:1:exon
so has part: feature:86226-86393:1:exon
so has part: feature:86704-86905:1:exon
so has part: feature:88171-88244:1:exon
so has part: feature:88603-88793:1:exon
so has part: feature:89688-89817:1:exon
so has part: feature:90170-90308:1:exon
so has part: feature:92834-92992:1:exon
so has part: feature:93702-94304:1:exon
so has part: feature:94853-94969:1:exon
so has part: feature:95315-95484:1:exon
so has part: feature:96398-97014:1:exon
so has part: feature:97681-97709:1:exon
so has part: feature:97990-98122:1:exon
so has part: feature:98811-98973:1:exon
so has part: feature:99470-99681:1:exon
so has part: feature:100501-100589:1:exon
so has part: feature:101219-101336:1:exon

XP_040394668.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:83011-83087:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:84260-84484:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:84834-85006:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:85526-85563:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:85700-85799:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:86226-86393:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:86704-86905:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:88171-88244:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:88603-88793:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:89688-89817:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:90170-90308:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:92834-92992:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:93702-94304:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:94853-94969:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:95315-95484:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:96398-97014:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:97681-97709:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:97990-98122:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:98811-98973:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:99470-99681:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:100501-100589:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:101219-101336:1:exon

SETDB1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: SETDB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone-lysine N-methyltransferase SETDB1 isoform X6
translation: MRQARRGPLQRLLGLHLGRGVDQLSRCAAEMDSQEIKELQQEVMEELGISMEELQDIIDEELEKFECVKQRKQQLEELEKCVKQKEEEVAHVDRLFDDASRAIDKCEILVKDLYSKLGLQYRESSSEDEDLAAKPTEVIEIPDEDDDDVMSIDLGWKNSDTNPKIVKDQTLLREAMAAMRKSAQDVQKFMDAVNKKTNAQDALKDAQTPQQTPATLQSVGPAAAGSDLSNDGDLNIGMRILGKKRTKTWHKGTLIAIQSVGAGKKYKVKFDNKGKSLLSGNHIAYDYHPSPEKHYVGSRVVAKYKDGNQVWLYAGIVAETPNMKNKDRFLIFFDDGYASYVKEWELYPICRPLKKTWEDIEDVSCRDFIEEYITAYPNRPMVLLKNGQLIKTEWEGTWWKSRVEEVDGSLVKILFLDDKRCEWIYRGSTRLEPMFSMKTSTASTQEKKQSGQARTRPNVGAVRSKGPVVQYTQDLTGAGTQYKPLEQMQAASLAARSISPQPAEMEHWSPAALHSSTWTDLLTDLNDLQGTENSGSVVGLGGREPNQIKLSYGQVTHMPPPTRGPSGMFSEVRVCAEGGLDEGGTRPCDEGSMFENTRVPEHVLWDFNNFVGERDAVPVHFCHQCGFPIRIYGRLAPCQHVFCCDCALLHGQKGERRCPNCKEPVQQVKFYSPDAL
SIO_010081: SETDB1
subclass of: SO_0000673
so part of: SETDB1
location: join(83011..83087,84260..84484,84834..85006,85526..85563,85700..85799,86226..86393,86704..86905,88171..88244,88603..88793,89688..89817,90170..90308,90669..91182)
location: region:83011-91182:1
so has part: feature:83011-83087:1:exon
so has part: feature:84260-84484:1:exon
so has part: feature:84834-85006:1:exon
so has part: feature:85526-85563:1:exon
so has part: feature:85700-85799:1:exon
so has part: feature:86226-86393:1:exon
so has part: feature:86704-86905:1:exon
so has part: feature:88171-88244:1:exon
so has part: feature:88603-88793:1:exon
so has part: feature:89688-89817:1:exon
so has part: feature:90170-90308:1:exon
so has part: feature:90669-91182:1:exon

XP_040394671.1
type: Protein
SIO_000068: ncbiprotein

position:91182:1
position: 91182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83011-83087:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:84260-84484:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:84834-85006:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:85526-85563:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:85700-85799:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:86226-86393:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:86704-86905:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:88171-88244:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:88603-88793:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:89688-89817:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:90170-90308:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:90669-91182:1:exon

SETDB1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: SETDB1
product: SET domain bifurcated histone lysine methyltransferase 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_040538735.1
SIO_010081: SETDB1
subclass of: SO_0000673
so part of: SETDB1
location: join(83957..84107,84260..84484,84834..85006,85526..85563,85700..85799,86226..86393,86704..86905,88171..88244,88603..88793,89688..89817,90170..90308,92834..92992,93702..94304,94853..94969,95315..95484,96398..97014,97681..97709,97990..98164,98811..98973,99470..99681,100501..100589,101219..102067)
location: region:83957-102067:1
so has part: feature:83957-84107:1:exon
so has part: feature:84260-84484:1:exon
so has part: feature:84834-85006:1:exon
so has part: feature:85526-85563:1:exon
so has part: feature:85700-85799:1:exon
so has part: feature:86226-86393:1:exon
so has part: feature:86704-86905:1:exon
so has part: feature:88171-88244:1:exon
so has part: feature:88603-88793:1:exon
so has part: feature:89688-89817:1:exon
so has part: feature:90170-90308:1:exon
so has part: feature:92834-92992:1:exon
so has part: feature:93702-94304:1:exon
so has part: feature:94853-94969:1:exon
so has part: feature:95315-95484:1:exon
so has part: feature:96398-97014:1:exon
so has part: feature:97681-97709:1:exon
so has part: feature:97990-98164:1:exon
so has part: feature:98811-98973:1:exon
so has part: feature:99470-99681:1:exon
so has part: feature:100501-100589:1:exon
so has part: feature:101219-102067:1:exon

position:83957:1
position: 83957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83957-84107:1:exon

position:84107:1
position: 84107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:84260-84484:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:84834-85006:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:85526-85563:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:85700-85799:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:86226-86393:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:86704-86905:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:88171-88244:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:88603-88793:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:89688-89817:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:90170-90308:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:92834-92992:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:93702-94304:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:94853-94969:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:95315-95484:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:96398-97014:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:97681-97709:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:97990-98164:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:98811-98973:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:99470-99681:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:100501-100589:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:101219-102067:1:exon

SETDB1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: SETDB1
product: SET domain bifurcated histone lysine methyltransferase 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_040538733.1
SIO_010081: SETDB1
subclass of: SO_0000673
so part of: SETDB1
location: join(83964..84169,84260..84484,84834..85006,85526..85563,85700..85799,86226..86393,86704..86905,88171..88244,88603..88793,89688..89817,90170..90308,92834..92992,93702..94304,94853..94969,95315..95484,96398..97014,97681..97709,97990..98164,98811..98973,99470..99681,100501..100589,101219..102067)
location: region:83964-102067:1
so has part: feature:83964-84169:1:exon
so has part: feature:84260-84484:1:exon
so has part: feature:84834-85006:1:exon
so has part: feature:85526-85563:1:exon
so has part: feature:85700-85799:1:exon
so has part: feature:86226-86393:1:exon
so has part: feature:86704-86905:1:exon
so has part: feature:88171-88244:1:exon
so has part: feature:88603-88793:1:exon
so has part: feature:89688-89817:1:exon
so has part: feature:90170-90308:1:exon
so has part: feature:92834-92992:1:exon
so has part: feature:93702-94304:1:exon
so has part: feature:94853-94969:1:exon
so has part: feature:95315-95484:1:exon
so has part: feature:96398-97014:1:exon
so has part: feature:97681-97709:1:exon
so has part: feature:97990-98164:1:exon
so has part: feature:98811-98973:1:exon
so has part: feature:99470-99681:1:exon
so has part: feature:100501-100589:1:exon
so has part: feature:101219-102067:1:exon

position:83964:1
position: 83964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83964-84169:1:exon

position:84169:1
position: 84169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:84260-84484:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:84834-85006:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:85526-85563:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:85700-85799:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:86226-86393:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:86704-86905:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:88171-88244:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:88603-88793:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:89688-89817:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:90170-90308:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:92834-92992:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:93702-94304:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:94853-94969:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:95315-95484:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:96398-97014:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:97681-97709:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:97990-98164:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:98811-98973:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:99470-99681:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:100501-100589:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:101219-102067:1:exon

SETDB1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: SETDB1
product: SET domain bifurcated histone lysine methyltransferase 1, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 long SRA reads, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_040538736.1
SIO_010081: SETDB1
subclass of: SO_0000673
so part of: SETDB1
location: join(83989..84107,84260..84484,84834..85006,85526..85563,85700..85799,86226..86393,86704..86905,88171..88244,88603..88793,89688..89817,90170..90308,92834..92992,93702..94304,94853..94969,95315..95484,96398..97014,97681..97709,97990..98122,98811..98973,99470..99681,100501..100589,101219..102067)
location: region:83989-102067:1
so has part: feature:83989-84107:1:exon
so has part: feature:84260-84484:1:exon
so has part: feature:84834-85006:1:exon
so has part: feature:85526-85563:1:exon
so has part: feature:85700-85799:1:exon
so has part: feature:86226-86393:1:exon
so has part: feature:86704-86905:1:exon
so has part: feature:88171-88244:1:exon
so has part: feature:88603-88793:1:exon
so has part: feature:89688-89817:1:exon
so has part: feature:90170-90308:1:exon
so has part: feature:92834-92992:1:exon
so has part: feature:93702-94304:1:exon
so has part: feature:94853-94969:1:exon
so has part: feature:95315-95484:1:exon
so has part: feature:96398-97014:1:exon
so has part: feature:97681-97709:1:exon
so has part: feature:97990-98122:1:exon
so has part: feature:98811-98973:1:exon
so has part: feature:99470-99681:1:exon
so has part: feature:100501-100589:1:exon
so has part: feature:101219-102067:1:exon

position:83989:1
position: 83989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83989-84107:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:84260-84484:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:84834-85006:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:85526-85563:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:85700-85799:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:86226-86393:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:86704-86905:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:88171-88244:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:88603-88793:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:89688-89817:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:90170-90308:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:92834-92992:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:93702-94304:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:94853-94969:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:95315-95484:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:96398-97014:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:97681-97709:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:97990-98122:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:98811-98973:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:99470-99681:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:100501-100589:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:101219-102067:1:exon

SETDB1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: SETDB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone-lysine N-methyltransferase SETDB1 isoform X4
translation: MKWGCRCAAEMDSQEIKELQQEVMEELGISMEELQDIIDEELEKFECVKQRKQQLEELEKCVKQKEEEVAHVDRLFDDASRAIDKCEILVKDLYSKLGLQYRESSSEDEDLAAKPTEVIEIPDEDDDDVMSIDLGWKNSDTNPKIVKDQTLLREAMAAMRKSAQDVQKFMDAVNKKTNAQDALKDAQTPQQTPATLQSVGPAAAGSDLSNDGDLNIGMRILGKKRTKTWHKGTLIAIQSVGAGKKYKVKFDNKGKSLLSGNHIAYDYHPSPEKHYVGSRVVAKYKDGNQVWLYAGIVAETPNMKNKDRFLIFFDDGYASYVKEWELYPICRPLKKTWEDIEDVSCRDFIEEYITAYPNRPMVLLKNGQLIKTEWEGTWWKSRVEEVDGSLVKILFLDDKRCEWIYRGSTRLEPMFSMKTSTASTQEKKQSGQARTRPNVGAVRSKGPVVQYTQDLTGAGTQYKPLEQMQAASLAARSISPQPAEMECSDSQLAQSRKQVAKKSTSFRPGSVGSGQSSPSSPVLSDTPPAGRTGASQQHRFSSGQAGTGTAQTFHGMMDRVPNEPSYRAPLEKLFYLPHVCSYTCLSRVRPIRSDQYRSKNPLLIPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTMQEIERYLFETDCDFLFLEMFCLDPYVLVDRKFQPYKPYYYIADITKGREDVPLSCVNEIDNTPPPQVAYSKERIPGKGVYINTSWEFLVGCDCKDGCRDKSKCACHQLTVQATGCTPGGQINPNSGYQHKRLEECLPTGVYECNKRCKCNINMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYESDAKCSSDSSGVDLKEEEEENTGTEEQEESNEDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQKENGLSETASKDSGLTRQISHDEIAVAASCKLPVSEETSKNKVASWLSSNSMSDGFQDNDSASSFKMSEGGEVKACKTDLPVEREKASAPVLGDVDGESKALKKDEPEDSSKFPGLSDLGRMYGYNPSPPKLEGIRRPTSKTALLQSRRHSVPLQPTTEVSADPSSFRHGLQGDVLTLSSSTDSEGENGQTAAGQAQGTTNDSDDIQTISSGSEEEEGDDKKNPSGSGPVKRQVAVKSTRGFALKSTHGIAIKSTNMAVADKGESVPVRRTTRQFYDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSVEGKELLCCCGAIECRGRLL
SIO_010081: SETDB1
subclass of: SO_0000673
so part of: SETDB1
location: join(84091..84107,84260..84484,84834..85006,85526..85563,85700..85799,86226..86393,86704..86905,88171..88244,88603..88793,89688..89817,90170..90308,92834..92992,93702..94304,94853..94969,95315..95484,96398..97014,97681..97709,97990..98164,98811..98973,99470..99681,100501..100589,101219..101336)
location: region:84091-101336:1
so has part: feature:84091-84107:1:exon
so has part: feature:84260-84484:1:exon
so has part: feature:84834-85006:1:exon
so has part: feature:85526-85563:1:exon
so has part: feature:85700-85799:1:exon
so has part: feature:86226-86393:1:exon
so has part: feature:86704-86905:1:exon
so has part: feature:88171-88244:1:exon
so has part: feature:88603-88793:1:exon
so has part: feature:89688-89817:1:exon
so has part: feature:90170-90308:1:exon
so has part: feature:92834-92992:1:exon
so has part: feature:93702-94304:1:exon
so has part: feature:94853-94969:1:exon
so has part: feature:95315-95484:1:exon
so has part: feature:96398-97014:1:exon
so has part: feature:97681-97709:1:exon
so has part: feature:97990-98164:1:exon
so has part: feature:98811-98973:1:exon
so has part: feature:99470-99681:1:exon
so has part: feature:100501-100589:1:exon
so has part: feature:101219-101336:1:exon

XP_040394669.1
type: Protein
SIO_000068: ncbiprotein

position:84091:1
position: 84091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84091-84107:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:84260-84484:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:84834-85006:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:85526-85563:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:85700-85799:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:86226-86393:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:86704-86905:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:88171-88244:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:88603-88793:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:89688-89817:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:90170-90308:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:92834-92992:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:93702-94304:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:94853-94969:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:95315-95484:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:96398-97014:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:97681-97709:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:97990-98164:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:98811-98973:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:99470-99681:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:100501-100589:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:101219-101336:1:exon

SETDB1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: SETDB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone-lysine N-methyltransferase SETDB1 isoform X5
translation: MKWGCRCAAEMDSQEIKELQQEVMEELGISMEELQDIIDEELEKFECVKQRKQQLEELEKCVKQKEEEVAHVDRLFDDASRAIDKCEILVKDLYSKLGLQYRESSSEDEDLAAKPTEVIEIPDEDDDDVMSIDLGWKNSDTNPKIVKDQTLLREAMAAMRKSAQDVQKFMDAVNKKTNAQDALKDAQTPQQTPATLQSVGPAAAGSDLSNDGDLNIGMRILGKKRTKTWHKGTLIAIQSVGAGKKYKVKFDNKGKSLLSGNHIAYDYHPSPEKHYVGSRVVAKYKDGNQVWLYAGIVAETPNMKNKDRFLIFFDDGYASYVKEWELYPICRPLKKTWEDIEDVSCRDFIEEYITAYPNRPMVLLKNGQLIKTEWEGTWWKSRVEEVDGSLVKILFLDDKRCEWIYRGSTRLEPMFSMKTSTASTQEKKQSGQARTRPNVGAVRSKGPVVQYTQDLTGAGTQYKPLEQMQAASLAARSISPQPAEMECSDSQLAQSRKQVAKKSTSFRPGSVGSGQSSPSSPVLSDTPPAGRTGASQQHRFSSGQAGTGTAQTFHGMMDRVPNEPSYRAPLEKLFYLPHVCSYTCLSRVRPIRSDQYRSKNPLLIPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTMQEIERYLFETDCDFLFLEMFCLDPYVLVDRKFQPYKPYYYIADITKGREDVPLSCVNEIDNTPPPQVAYSKERIPGKGVYINTSWEFLVGCDCKDGCRDKSKCACHQLTVQATGCTPGGQINPNSGYQHKRLEECLPTGVYECNKRCKCNINMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYESDAKCSSDSSGVDLKEEEEENTGTEEQEESNEDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQKENGLSETASKDSGLTRQISHDEIAVAASCKLPVSEETSKNKVASWLSSNSMSDGFQDNDSASSFKMSEGGEVKACKTDLPVEREKASAPVLGDVDGESKALKKDEPEDSSKFPGLSDLGRMYGYNPSPPKLEGIRRPTSKTALLQSRRHSVPLQPTTEDVLTLSSSTDSEGENGQTAAGQAQGTTNDSDDIQTISSGSEEEEGDDKKNPSGSGPVKRQVAVKSTRGFALKSTHGIAIKSTNMAVADKGESVPVRRTTRQFYDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSVEGKELLCCCGAIECRGRLL
SIO_010081: SETDB1
subclass of: SO_0000673
so part of: SETDB1
location: join(84091..84107,84260..84484,84834..85006,85526..85563,85700..85799,86226..86393,86704..86905,88171..88244,88603..88793,89688..89817,90170..90308,92834..92992,93702..94304,94853..94969,95315..95484,96398..97014,97681..97709,97990..98122,98811..98973,99470..99681,100501..100589,101219..101336)
location: region:84091-101336:1
so has part: feature:84091-84107:1:exon
so has part: feature:84260-84484:1:exon
so has part: feature:84834-85006:1:exon
so has part: feature:85526-85563:1:exon
so has part: feature:85700-85799:1:exon
so has part: feature:86226-86393:1:exon
so has part: feature:86704-86905:1:exon
so has part: feature:88171-88244:1:exon
so has part: feature:88603-88793:1:exon
so has part: feature:89688-89817:1:exon
so has part: feature:90170-90308:1:exon
so has part: feature:92834-92992:1:exon
so has part: feature:93702-94304:1:exon
so has part: feature:94853-94969:1:exon
so has part: feature:95315-95484:1:exon
so has part: feature:96398-97014:1:exon
so has part: feature:97681-97709:1:exon
so has part: feature:97990-98122:1:exon
so has part: feature:98811-98973:1:exon
so has part: feature:99470-99681:1:exon
so has part: feature:100501-100589:1:exon
so has part: feature:101219-101336:1:exon

XP_040394670.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:84091-84107:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:84260-84484:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:84834-85006:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:85526-85563:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:85700-85799:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:86226-86393:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:86704-86905:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:88171-88244:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:88603-88793:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:89688-89817:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:90170-90308:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:92834-92992:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:93702-94304:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:94853-94969:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:95315-95484:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:96398-97014:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:97681-97709:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:97990-98122:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:98811-98973:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:99470-99681:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:100501-100589:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:101219-101336:1:exon

SETDB1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: SETDB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone-lysine N-methyltransferase SETDB1 isoform X2
translation: MGLQVWASLGLDVITILTASFQKTGCAAEMDSQEIKELQQEVMEELGISMEELQDIIDEELEKFECVKQRKQQLEELEKCVKQKEEEVAHVDRLFDDASRAIDKCEILVKDLYSKLGLQYRESSSEDEDLAAKPTEVIEIPDEDDDDVMSIDLGWKNSDTNPKIVKDQTLLREAMAAMRKSAQDVQKFMDAVNKKTNAQDALKDAQTPQQTPATLQSVGPAAAGSDLSNDGDLNIGMRILGKKRTKTWHKGTLIAIQSVGAGKKYKVKFDNKGKSLLSGNHIAYDYHPSPEKHYVGSRVVAKYKDGNQVWLYAGIVAETPNMKNKDRFLIFFDDGYASYVKEWELYPICRPLKKTWEDIEDVSCRDFIEEYITAYPNRPMVLLKNGQLIKTEWEGTWWKSRVEEVDGSLVKILFLDDKRCEWIYRGSTRLEPMFSMKTSTASTQEKKQSGQARTRPNVGAVRSKGPVVQYTQDLTGAGTQYKPLEQMQAASLAARSISPQPAEMECSDSQLAQSRKQVAKKSTSFRPGSVGSGQSSPSSPVLSDTPPAGRTGASQQHRFSSGQAGTGTAQTFHGMMDRVPNEPSYRAPLEKLFYLPHVCSYTCLSRVRPIRSDQYRSKNPLLIPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTMQEIERYLFETDCDFLFLEMFCLDPYVLVDRKFQPYKPYYYIADITKGREDVPLSCVNEIDNTPPPQVAYSKERIPGKGVYINTSWEFLVGCDCKDGCRDKSKCACHQLTVQATGCTPGGQINPNSGYQHKRLEECLPTGVYECNKRCKCNINMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYESDAKCSSDSSGVDLKEEEEENTGTEEQEESNEDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQKENGLSETASKDSGLTRQISHDEIAVAASCKLPVSEETSKNKVASWLSSNSMSDGFQDNDSASSFKMSEGGEVKACKTDLPVEREKASAPVLGDVDGESKALKKDEPEDSSKFPGLSDLGRMYGYNPSPPKLEGIRRPTSKTALLQSRRHSVPLQPTTEVSADPSSFRHGLQGDVLTLSSSTDSEGENGQTAAGQAQGTTNDSDDIQTISSGSEEEEGDDKKNPSGSGPVKRQVAVKSTRGFALKSTHGIAIKSTNMAVADKGESVPVRRTTRQFYDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSVEGKELLCCCGAIECRGRLL
SIO_010081: SETDB1
subclass of: SO_0000673
so part of: SETDB1
location: join(84096..84169,84260..84484,84834..85006,85526..85563,85700..85799,86226..86393,86704..86905,88171..88244,88603..88793,89688..89817,90170..90308,92834..92992,93702..94304,94853..94969,95315..95484,96398..97014,97681..97709,97990..98164,98811..98973,99470..99681,100501..100589,101219..101336)
location: region:84096-101336:1
so has part: feature:84096-84169:1:exon
so has part: feature:84260-84484:1:exon
so has part: feature:84834-85006:1:exon
so has part: feature:85526-85563:1:exon
so has part: feature:85700-85799:1:exon
so has part: feature:86226-86393:1:exon
so has part: feature:86704-86905:1:exon
so has part: feature:88171-88244:1:exon
so has part: feature:88603-88793:1:exon
so has part: feature:89688-89817:1:exon
so has part: feature:90170-90308:1:exon
so has part: feature:92834-92992:1:exon
so has part: feature:93702-94304:1:exon
so has part: feature:94853-94969:1:exon
so has part: feature:95315-95484:1:exon
so has part: feature:96398-97014:1:exon
so has part: feature:97681-97709:1:exon
so has part: feature:97990-98164:1:exon
so has part: feature:98811-98973:1:exon
so has part: feature:99470-99681:1:exon
so has part: feature:100501-100589:1:exon
so has part: feature:101219-101336:1:exon

XP_040394667.1
type: Protein
SIO_000068: ncbiprotein

position:84096:1
position: 84096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84096-84169:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:84260-84484:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:84834-85006:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:85526-85563:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:85700-85799:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:86226-86393:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:86704-86905:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:88171-88244:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:88603-88793:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:89688-89817:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:90170-90308:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:92834-92992:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:93702-94304:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:94853-94969:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:95315-95484:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:96398-97014:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:97681-97709:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:97990-98164:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:98811-98973:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:99470-99681:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:100501-100589:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:101219-101336:1:exon

CERS2
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: CERS2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(103270..109956)
location: region:103270-109956:-1
so has part: feature:103270-109956:-1:exon
subclass of: SO_0000010

121060665
type: Gene
SIO_000068: ncbigene

position:103270:-1
position: 103270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:109956:-1
position: 109956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:103270-109956:-1:exon

CERS2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CERS2
product: ceramide synthase 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 long SRA reads, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538629.1
SIO_010081: CERS2
subclass of: SO_0000673
so part of: CERS2
location: complement(join(103270..104610,104951..105104,105214..105320,105404..105532,105753..105845,106121..106171,106256..106313,106519..106637,106744..106861,107553..107726,109840..109956))
location: region:103270-109956:-1
so has part: feature:109840-109956:-1:exon
so has part: feature:107553-107726:-1:exon
so has part: feature:106744-106861:-1:exon
so has part: feature:106519-106637:-1:exon
so has part: feature:106256-106313:-1:exon
so has part: feature:106121-106171:-1:exon
so has part: feature:105753-105845:-1:exon
so has part: feature:105404-105532:-1:exon
so has part: feature:105214-105320:-1:exon
so has part: feature:104951-105104:-1:exon
so has part: feature:103270-104610:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:109840-109956:-1:exon

position:109840:-1
position: 109840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:107553-107726:-1:exon

position:107553:-1
position: 107553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:107726:-1
position: 107726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:106744-106861:-1:exon

position:106744:-1
position: 106744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:106861:-1
position: 106861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:106519-106637:-1:exon

position:106519:-1
position: 106519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:106637:-1
position: 106637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:106256-106313:-1:exon

position:106256:-1
position: 106256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:106313:-1
position: 106313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:106121-106171:-1:exon

position:106121:-1
position: 106121
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:106171:-1
position: 106171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:105753-105845:-1:exon

position:105753:-1
position: 105753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:105845:-1
position: 105845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:105404-105532:-1:exon

position:105404:-1
position: 105404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:105532:-1
position: 105532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:105214-105320:-1:exon

position:105214:-1
position: 105214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:105320:-1
position: 105320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:104951-105104:-1:exon

position:104951:-1
position: 104951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:105104:-1
position: 105104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:103270-104610:-1:exon

position:104610:-1
position: 104610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CERS2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CERS2
product: ceramide synthase 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 long SRA reads, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_040538627.1
SIO_010081: CERS2
subclass of: SO_0000673
so part of: CERS2
location: complement(join(103270..104610,104951..105104,105214..105320,105404..105532,105753..105845,106121..106171,106256..106313,106519..106637,106744..106861,107553..107726,109834..109894))
location: region:103270-109894:-1
so has part: feature:109834-109894:-1:exon
so has part: feature:107553-107726:-1:exon
so has part: feature:106744-106861:-1:exon
so has part: feature:106519-106637:-1:exon
so has part: feature:106256-106313:-1:exon
so has part: feature:106121-106171:-1:exon
so has part: feature:105753-105845:-1:exon
so has part: feature:105404-105532:-1:exon
so has part: feature:105214-105320:-1:exon
so has part: feature:104951-105104:-1:exon
so has part: feature:103270-104610:-1:exon

position:109894:-1
position: 109894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:109834-109894:-1:exon

position:109834:-1
position: 109834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:107553-107726:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:106744-106861:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:106519-106637:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:106256-106313:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:106121-106171:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:105753-105845:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:105404-105532:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:105214-105320:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:104951-105104:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:103270-104610:-1:exon

CERS2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CERS2
product: ceramide synthase 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 long SRA reads, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_040538628.1
SIO_010081: CERS2
subclass of: SO_0000673
so part of: CERS2
location: complement(join(103270..104610,104951..105104,105214..105320,105404..105532,105753..105845,106121..106171,106256..106313,106519..106637,106744..106861,107553..107726,109442..109500))
location: region:103270-109500:-1
so has part: feature:109442-109500:-1:exon
so has part: feature:107553-107726:-1:exon
so has part: feature:106744-106861:-1:exon
so has part: feature:106519-106637:-1:exon
so has part: feature:106256-106313:-1:exon
so has part: feature:106121-106171:-1:exon
so has part: feature:105753-105845:-1:exon
so has part: feature:105404-105532:-1:exon
so has part: feature:105214-105320:-1:exon
so has part: feature:104951-105104:-1:exon
so has part: feature:103270-104610:-1:exon

position:109500:-1
position: 109500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:109442-109500:-1:exon

position:109442:-1
position: 109442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:107553-107726:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:106744-106861:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:106519-106637:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:106256-106313:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:106121-106171:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:105753-105845:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:105404-105532:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:105214-105320:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:104951-105104:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:103270-104610:-1:exon

CERS2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CERS2
product: ceramide synthase 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 long SRA reads, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_040538626.1
SIO_010081: CERS2
subclass of: SO_0000673
so part of: CERS2
location: complement(join(103270..104610,104951..105104,105214..105320,105404..105532,105753..105845,106121..106171,106256..106313,106519..106637,106744..106861,107553..107726,108305..109005))
location: region:103270-109005:-1
so has part: feature:108305-109005:-1:exon
so has part: feature:107553-107726:-1:exon
so has part: feature:106744-106861:-1:exon
so has part: feature:106519-106637:-1:exon
so has part: feature:106256-106313:-1:exon
so has part: feature:106121-106171:-1:exon
so has part: feature:105753-105845:-1:exon
so has part: feature:105404-105532:-1:exon
so has part: feature:105214-105320:-1:exon
so has part: feature:104951-105104:-1:exon
so has part: feature:103270-104610:-1:exon

position:109005:-1
position: 109005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:108305-109005:-1:exon

position:108305:-1
position: 108305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:107553-107726:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:106744-106861:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:106519-106637:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:106256-106313:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:106121-106171:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:105753-105845:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:105404-105532:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:105214-105320:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:104951-105104:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:103270-104610:-1:exon

CERS2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CERS2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ceramide synthase 2 isoform X1
translation: MRSLTLQEPGQGSMLEPGARFLPPACARLRPAARRQEPASVNDHPLTSLAHGAKSLCWSRAPGHPGVQGDPRCPMDPSPGWLHGDLWLLGAEVKAGMFQTLYSYFWWERLWLPANLTWADLEDRDGRVYAKASDLYITIPLAFLFLIVRHLFETYVATPLAGLLNVKEKIRLKATPNAVLEKFYAATTKHPKQADVEMLSKKSGCTVRQVERWFRRRRNQDRPSLLKKFREASWRFTFYLIAFIAGMAVIVDKPWFYDLREVWKGYPIQSMLPSQYWYYMIELSFYWSLLFSIASDVKRKDFKEQIIHHVATIILISFSWFANYIRAGTLIMALHDSSDYLLESAKMFNYAGWRNTCNNIFIVFAAVFIVTRLVILPFWIMHCTVVYPLDLYPAFFGYYFFNFMMAVLQSLHIFWAYLIIRMAQKFITGKVVEDERSDREETDNSEEEEEVVKNGPLSNGHPVLNNNHRKND
SIO_010081: CERS2
subclass of: SO_0000673
so part of: CERS2
location: complement(join(104482..104610,104951..105104,105214..105320,105404..105532,105753..105845,106121..106171,106256..106313,106519..106637,106744..106861,107553..107726,108305..108591))
location: region:104482-108591:-1
so has part: feature:108305-108591:-1:exon
so has part: feature:107553-107726:-1:exon
so has part: feature:106744-106861:-1:exon
so has part: feature:106519-106637:-1:exon
so has part: feature:106256-106313:-1:exon
so has part: feature:106121-106171:-1:exon
so has part: feature:105753-105845:-1:exon
so has part: feature:105404-105532:-1:exon
so has part: feature:105214-105320:-1:exon
so has part: feature:104951-105104:-1:exon
so has part: feature:104482-104610:-1:exon

XP_040394560.1
type: Protein
SIO_000068: ncbiprotein

position:104482:-1
position: 104482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:108591:-1
position: 108591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:108305-108591:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:107553-107726:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:106744-106861:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:106519-106637:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:106256-106313:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:106121-106171:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:105753-105845:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:105404-105532:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:105214-105320:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:104951-105104:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:104482-104610:-1:exon

CERS2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CERS2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ceramide synthase 2 isoform X2
translation: MFQTLYSYFWWERLWLPANLTWADLEDRDGRVYAKASDLYITIPLAFLFLIVRHLFETYVATPLAGLLNVKEKIRLKATPNAVLEKFYAATTKHPKQADVEMLSKKSGCTVRQVERWFRRRRNQDRPSLLKKFREASWRFTFYLIAFIAGMAVIVDKPWFYDLREVWKGYPIQSMLPSQYWYYMIELSFYWSLLFSIASDVKRKDFKEQIIHHVATIILISFSWFANYIRAGTLIMALHDSSDYLLESAKMFNYAGWRNTCNNIFIVFAAVFIVTRLVILPFWIMHCTVVYPLDLYPAFFGYYFFNFMMAVLQSLHIFWAYLIIRMAQKFITGKVVEDERSDREETDNSEEEEEVVKNGPLSNGHPVLNNNHRKND
SIO_010081: CERS2
subclass of: SO_0000673
so part of: CERS2
location: complement(join(104482..104610,104951..105104,105214..105320,105404..105532,105753..105845,106121..106171,106256..106313,106519..106637,106744..106861,107553..107725))
location: region:104482-107725:-1
so has part: feature:107553-107725:-1:exon
so has part: feature:106744-106861:-1:exon
so has part: feature:106519-106637:-1:exon
so has part: feature:106256-106313:-1:exon
so has part: feature:106121-106171:-1:exon
so has part: feature:105753-105845:-1:exon
so has part: feature:105404-105532:-1:exon
so has part: feature:105214-105320:-1:exon
so has part: feature:104951-105104:-1:exon
so has part: feature:104482-104610:-1:exon

XP_040394561.1
type: Protein
SIO_000068: ncbiprotein

position:107725:-1
position: 107725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:107553-107725:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:106744-106861:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:106519-106637:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:106256-106313:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:106121-106171:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:105753-105845:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:105404-105532:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:105214-105320:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:104951-105104:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:104482-104610:-1:exon

CERS2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CERS2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ceramide synthase 2 isoform X2
translation: MFQTLYSYFWWERLWLPANLTWADLEDRDGRVYAKASDLYITIPLAFLFLIVRHLFETYVATPLAGLLNVKEKIRLKATPNAVLEKFYAATTKHPKQADVEMLSKKSGCTVRQVERWFRRRRNQDRPSLLKKFREASWRFTFYLIAFIAGMAVIVDKPWFYDLREVWKGYPIQSMLPSQYWYYMIELSFYWSLLFSIASDVKRKDFKEQIIHHVATIILISFSWFANYIRAGTLIMALHDSSDYLLESAKMFNYAGWRNTCNNIFIVFAAVFIVTRLVILPFWIMHCTVVYPLDLYPAFFGYYFFNFMMAVLQSLHIFWAYLIIRMAQKFITGKVVEDERSDREETDNSEEEEEVVKNGPLSNGHPVLNNNHRKND
SIO_010081: CERS2
subclass of: SO_0000673
so part of: CERS2
location: complement(join(104482..104610,104951..105104,105214..105320,105404..105532,105753..105845,106121..106171,106256..106313,106519..106637,106744..106861,107553..107725))
location: region:104482-107725:-1
so has part: feature:107553-107725:-1:exon
so has part: feature:106744-106861:-1:exon
so has part: feature:106519-106637:-1:exon
so has part: feature:106256-106313:-1:exon
so has part: feature:106121-106171:-1:exon
so has part: feature:105753-105845:-1:exon
so has part: feature:105404-105532:-1:exon
so has part: feature:105214-105320:-1:exon
so has part: feature:104951-105104:-1:exon
so has part: feature:104482-104610:-1:exon

XP_040394562.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:107553-107725:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:106744-106861:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:106519-106637:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:106256-106313:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:106121-106171:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:105753-105845:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:105404-105532:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:105214-105320:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:104951-105104:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:104482-104610:-1:exon

CERS2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CERS2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ceramide synthase 2 isoform X2
translation: MFQTLYSYFWWERLWLPANLTWADLEDRDGRVYAKASDLYITIPLAFLFLIVRHLFETYVATPLAGLLNVKEKIRLKATPNAVLEKFYAATTKHPKQADVEMLSKKSGCTVRQVERWFRRRRNQDRPSLLKKFREASWRFTFYLIAFIAGMAVIVDKPWFYDLREVWKGYPIQSMLPSQYWYYMIELSFYWSLLFSIASDVKRKDFKEQIIHHVATIILISFSWFANYIRAGTLIMALHDSSDYLLESAKMFNYAGWRNTCNNIFIVFAAVFIVTRLVILPFWIMHCTVVYPLDLYPAFFGYYFFNFMMAVLQSLHIFWAYLIIRMAQKFITGKVVEDERSDREETDNSEEEEEVVKNGPLSNGHPVLNNNHRKND
SIO_010081: CERS2
subclass of: SO_0000673
so part of: CERS2
location: complement(join(104482..104610,104951..105104,105214..105320,105404..105532,105753..105845,106121..106171,106256..106313,106519..106637,106744..106861,107553..107725))
location: region:104482-107725:-1
so has part: feature:107553-107725:-1:exon
so has part: feature:106744-106861:-1:exon
so has part: feature:106519-106637:-1:exon
so has part: feature:106256-106313:-1:exon
so has part: feature:106121-106171:-1:exon
so has part: feature:105753-105845:-1:exon
so has part: feature:105404-105532:-1:exon
so has part: feature:105214-105320:-1:exon
so has part: feature:104951-105104:-1:exon
so has part: feature:104482-104610:-1:exon

XP_040394563.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:107553-107725:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:106744-106861:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:106519-106637:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:106256-106313:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:106121-106171:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:105753-105845:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:105404-105532:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:105214-105320:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:104951-105104:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:104482-104610:-1:exon

MINDY1
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: MINDY1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(110352..113820)
location: region:110352-113820:-1
so has part: feature:110352-113820:-1:exon
subclass of: SO_0000010

121060668
type: Gene
SIO_000068: ncbigene

position:110352:-1
position: 110352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:113820:-1
position: 113820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:110352-113820:-1:exon

MINDY1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: MINDY1
product: MINDY lysine 48 deubiquitinase 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 long SRA reads, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538635.1
SIO_010081: MINDY1
subclass of: SO_0000673
so part of: MINDY1
location: complement(join(110352..110723,110893..111039,111171..111350,111494..111636,111719..111821,112149..112307,112536..112600,112989..113046,113326..113820))
location: region:110352-113820:-1
so has part: feature:113326-113820:-1:exon
so has part: feature:112989-113046:-1:exon
so has part: feature:112536-112600:-1:exon
so has part: feature:112149-112307:-1:exon
so has part: feature:111719-111821:-1:exon
so has part: feature:111494-111636:-1:exon
so has part: feature:111171-111350:-1:exon
so has part: feature:110893-111039:-1:exon
so has part: feature:110352-110723:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:113326-113820:-1:exon

position:113326:-1
position: 113326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:112989-113046:-1:exon

position:112989:-1
position: 112989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:113046:-1
position: 113046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:112536-112600:-1:exon

position:112536:-1
position: 112536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:112600:-1
position: 112600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:112149-112307:-1:exon

position:112149:-1
position: 112149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:112307:-1
position: 112307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:111719-111821:-1:exon

position:111719:-1
position: 111719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:111821:-1
position: 111821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:111494-111636:-1:exon

position:111494:-1
position: 111494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:111636:-1
position: 111636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:111171-111350:-1:exon

position:111171:-1
position: 111171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:111350:-1
position: 111350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:110893-111039:-1:exon

position:110893:-1
position: 110893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:111039:-1
position: 111039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:110352-110723:-1:exon

position:110723:-1
position: 110723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MINDY1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: MINDY1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin carboxyl-terminal hydrolase MINDY-1
translation: MELQPEQGEILLTTGDGTQCQGTSSELCQLPHDAGEAGGGEDIPAVSQEAGRRGQALQPGEEDVLGPSNKKAPEEQQESEDSKVQDSQEGLPAPGESDASPGEASRPADEPPSTCPPAREREPEPDFYCVKWITWKGERTPIITQSENGPCPLLAIMNILFLQWKVKLPLQKEVVTSDELMAHLGDCILSIKPQEKSEGLQLNFQQNVNDTMMVLPKLSTGLDVNVRFTGVSDFEYTPECIVFDLLNVPLYHGWLVDPQSPEVVQAVGKLSYNQLVEKIITCKHSCDSNLVTEGLIAEQFLESTASQLTYHGLCELTAAVKEEELSVFFRNNHFSTMIKHKGHLYLLVTDQGFLQEERVVWESLHNVDGDSCFCDTDFHLSHALGKEAAAGAPPEQRQVDQDYMIALSLQQQQGQGPSTLSDLELARQLQQEEYQQQQQQQLRPAPAPAQGRAQPGGRSAVERRQRQKDSDCTLL
SIO_010081: MINDY1
subclass of: SO_0000673
so part of: MINDY1
location: complement(join(110646..110723,110893..111039,111171..111350,111494..111636,111719..111821,112149..112307,112536..112600,112989..113046,113326..113820))
location: region:110646-113820:-1
so has part: feature:113326-113820:-1:exon
so has part: feature:112989-113046:-1:exon
so has part: feature:112536-112600:-1:exon
so has part: feature:112149-112307:-1:exon
so has part: feature:111719-111821:-1:exon
so has part: feature:111494-111636:-1:exon
so has part: feature:111171-111350:-1:exon
so has part: feature:110893-111039:-1:exon
so has part: feature:110646-110723:-1:exon

XP_040394569.1
type: Protein
SIO_000068: ncbiprotein

position:110646:-1
position: 110646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:113326-113820:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:112989-113046:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:112536-112600:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:112149-112307:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:111719-111821:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:111494-111636:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:111171-111350:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:110893-111039:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:110646-110723:-1:exon

PRUNE1
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: PRUNE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 114704..123940
location: region:114704-123940:1
so has part: feature:114704-123940:1:exon
subclass of: SO_0000010

121060666
type: Gene
SIO_000068: ncbigene

position:114704:1
position: 114704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:123940:1
position: 123940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:114704-123940:1:exon

PRUNE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PRUNE1
product: prune exopolyphosphatase 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_040538633.1
SIO_010081: PRUNE1
subclass of: SO_0000673
so part of: PRUNE1
location: join(114704..114903,116689..116692,119047..119551,121634..121738,121813..122018,122197..122336)
location: region:114704-122336:1
so has part: feature:114704-114903:1:exon
so has part: feature:116689-116692:1:exon
so has part: feature:119047-119551:1:exon
so has part: feature:121634-121738:1:exon
so has part: feature:121813-122018:1:exon
so has part: feature:122197-122336:1:exon

position:122336:1
position: 122336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:114704-114903:1:exon

position:114903:1
position: 114903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:116689-116692:1:exon

position:116689:1
position: 116689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:116692:1
position: 116692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:119047-119551:1:exon

position:119047:1
position: 119047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:119551:1
position: 119551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:121634-121738:1:exon

position:121634:1
position: 121634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:121738:1
position: 121738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:121813-122018:1:exon

position:121813:1
position: 121813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:122018:1
position: 122018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:122197-122336:1:exon

position:122197:1
position: 122197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PRUNE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PRUNE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: exopolyphosphatase PRUNE1 isoform X3
translation: MLSPAHASLLPRGYTNRTRLLRPGSSLVGVFPPAALSVPGFLPRPLRFRSPSLTVFAPFSPSSAAERRGLHATGAPSTRRLPGGRTEGGGGRRAGGGGSGRETTAARGQASGRRGGEGGHGPASRAGTGTGTGTGPRPRASGLGIRRAREPGGAPPPPRPPAGPPRLSRQPARSGRPALGAVRGRGAGGAPGGRRVLAAAAAAMERFVEGRRAALQENIQCHQEVHVVMGNEACDLDSAVSALALAYFLAKTSSPPKAAFIPVLNIPRSDFALRTETTLLLREQGIAETSLIFRDEIDLARLHQAGLLSLTLVDHHVLPRCMPELSPSPSHPPALTQPWRRP
SIO_010081: PRUNE1
subclass of: SO_0000673
so part of: PRUNE1
location: join(114765..114903,116689..116692,119047..119551,121634..121738,121813..122018,122197..122266)
location: region:114765-122266:1
so has part: feature:114765-114903:1:exon
so has part: feature:116689-116692:1:exon
so has part: feature:119047-119551:1:exon
so has part: feature:121634-121738:1:exon
so has part: feature:121813-122018:1:exon
so has part: feature:122197-122266:1:exon

XP_040394567.1
type: Protein
SIO_000068: ncbiprotein

position:114765:1
position: 114765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:122266:1
position: 122266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:114765-114903:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:116689-116692:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:119047-119551:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:121634-121738:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:121813-122018:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:122197-122266:1:exon

PRUNE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PRUNE1
product: prune exopolyphosphatase 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_040538632.1
SIO_010081: PRUNE1
subclass of: SO_0000673
so part of: PRUNE1
location: join(119408..119551,121634..121738,121813..122018,122238..122416,122485..122643,122767..122861,123275..123940)
location: region:119408-123940:1
so has part: feature:119408-119551:1:exon
so has part: feature:121634-121738:1:exon
so has part: feature:121813-122018:1:exon
so has part: feature:122238-122416:1:exon
so has part: feature:122485-122643:1:exon
so has part: feature:122767-122861:1:exon
so has part: feature:123275-123940:1:exon

position:119408:1
position: 119408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:119408-119551:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:121634-121738:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:121813-122018:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:122238-122416:1:exon

position:122238:1
position: 122238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:122416:1
position: 122416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:122485-122643:1:exon

position:122485:1
position: 122485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:122643:1
position: 122643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:122767-122861:1:exon

position:122767:1
position: 122767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:122861:1
position: 122861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:123275-123940:1:exon

position:123275:1
position: 123275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PRUNE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PRUNE1
product: prune exopolyphosphatase 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538631.1
SIO_010081: PRUNE1
subclass of: SO_0000673
so part of: PRUNE1
location: join(119409..119551,121634..121738,121813..122018,122238..122416,122485..122643,122767..122861,122944..123102,123275..123940)
location: region:119409-123940:1
so has part: feature:119409-119551:1:exon
so has part: feature:121634-121738:1:exon
so has part: feature:121813-122018:1:exon
so has part: feature:122238-122416:1:exon
so has part: feature:122485-122643:1:exon
so has part: feature:122767-122861:1:exon
so has part: feature:122944-123102:1:exon
so has part: feature:123275-123940:1:exon

position:119409:1
position: 119409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:119409-119551:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:121634-121738:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:121813-122018:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:122238-122416:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:122485-122643:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:122767-122861:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:122944-123102:1:exon

position:122944:1
position: 122944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:123102:1
position: 123102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:123275-123940:1:exon

PRUNE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PRUNE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: exopolyphosphatase PRUNE1 isoform X1
translation: MERFVEGRRAALQENIQCHQEVHVVMGNEACDLDSAVSALALAYFLAKTSSPPKAAFIPVLNIPRSDFALRTETTLLLREQGIAETSLIFRDEIDLARLHQAGLLSLTLVDHHVLPSTDAALEEAIVDVLDHRPLERVPSCQFTVELVGSCATLVTERIAQGPPGVLDRTTAALLHGTILLDSVNLNPAAGKVTPRDVACISLLESRFPELPAHNTIYEALQAAKFDVSELTTEQMLQKDLKTLSNDELVLAISGIYINLETFLRRPNLLQDLEAFCQARGYAGLVAMTVSFNEHYEPTRQLAVYSQREALRSMVCQVLEEATAPSLHLQPLPSPWSCVSIYTQGNALASRKKVLPILRAALGGLGAMAGLEEDTAPPPTPMNSLVDESPLAQAVPPLCPQAVLERVSRMAAEQPPDPDK
SIO_010081: PRUNE1
subclass of: SO_0000673
so part of: PRUNE1
location: join(119513..119551,121634..121738,121813..122018,122238..122416,122485..122643,122767..122861,122944..123102,123275..123595)
location: region:119513-123595:1
so has part: feature:119513-119551:1:exon
so has part: feature:121634-121738:1:exon
so has part: feature:121813-122018:1:exon
so has part: feature:122238-122416:1:exon
so has part: feature:122485-122643:1:exon
so has part: feature:122767-122861:1:exon
so has part: feature:122944-123102:1:exon
so has part: feature:123275-123595:1:exon

XP_040394565.1
type: Protein
SIO_000068: ncbiprotein

position:119513:1
position: 119513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:123595:1
position: 123595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:119513-119551:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:121634-121738:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:121813-122018:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:122238-122416:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:122485-122643:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:122767-122861:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:122944-123102:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:123275-123595:1:exon

PRUNE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PRUNE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: exopolyphosphatase PRUNE1 isoform X2
translation: MERFVEGRRAALQENIQCHQEVHVVMGNEACDLDSAVSALALAYFLAKTSSPPKAAFIPVLNIPRSDFALRTETTLLLREQGIAETSLIFRDEIDLARLHQAGLLSLTLVDHHVLPSTDAALEEAIVDVLDHRPLERVPSCQFTVELVGSCATLVTERIAQGPPGVLDRTTAALLHGTILLDSVNLNPAAGKVTPRDVACISLLESRFPELPAHNTIYEALQAAKFDVSELTTEQMLQKDLKTLSNDELVLAISGIYINLEVCQVLEEATAPSLHLQPLPSPWSCVSIYTQGNALASRKKVLPILRAALGGLGAMAGLEEDTAPPPTPMNSLVDESPLAQAVPPLCPQAVLERVSRMAAEQPPDPDK
SIO_010081: PRUNE1
subclass of: SO_0000673
so part of: PRUNE1
location: join(119513..119551,121634..121738,121813..122018,122238..122416,122485..122643,122767..122861,123275..123595)
location: region:119513-123595:1
so has part: feature:119513-119551:1:exon
so has part: feature:121634-121738:1:exon
so has part: feature:121813-122018:1:exon
so has part: feature:122238-122416:1:exon
so has part: feature:122485-122643:1:exon
so has part: feature:122767-122861:1:exon
so has part: feature:123275-123595:1:exon

XP_040394566.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:119513-119551:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:121634-121738:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:121813-122018:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:122238-122416:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:122485-122643:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:122767-122861:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:123275-123595:1:exon

CDC42SE1
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: CDC42SE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(124515..128041)
location: region:124515-128041:-1
so has part: feature:124515-128041:-1:exon
subclass of: SO_0000010

121060677
type: Gene
SIO_000068: ncbigene

position:124515:-1
position: 124515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:128041:-1
position: 128041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124515-128041:-1:exon

CDC42SE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CDC42SE1
product: CDC42 small effector 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538658.1
SIO_010081: CDC42SE1
subclass of: SO_0000673
so part of: CDC42SE1
location: complement(join(124515..125480,125617..125691,125957..126067,126153..126341,127877..128041))
location: region:124515-128041:-1
so has part: feature:127877-128041:-1:exon
so has part: feature:126153-126341:-1:exon
so has part: feature:125957-126067:-1:exon
so has part: feature:125617-125691:-1:exon
so has part: feature:124515-125480:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:127877-128041:-1:exon

position:127877:-1
position: 127877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:126153-126341:-1:exon

position:126153:-1
position: 126153
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:126341:-1
position: 126341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:125957-126067:-1:exon

position:125957:-1
position: 125957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:126067:-1
position: 126067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:125617-125691:-1:exon

position:125617:-1
position: 125617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:125691:-1
position: 125691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:124515-125480:-1:exon

position:125480:-1
position: 125480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CDC42SE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CDC42SE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CDC42 small effector protein 1
translation: MSDFWHKLGCCVVEKPQPKKRRRRIDRSMIGEPMNFVHLTHIGSGDMAAGEGLPMTGAVQEMRSKGGRERQWTSSRVL
SIO_010081: CDC42SE1
subclass of: SO_0000673
so part of: CDC42SE1
location: complement(join(125620..125691,125957..126067,126153..126206))
location: region:125620-126206:-1
so has part: feature:126153-126206:-1:exon
so has part: feature:125957-126067:-1:exon
so has part: feature:125620-125691:-1:exon

XP_040394592.1
type: Protein
SIO_000068: ncbiprotein

position:125620:-1
position: 125620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:126206:-1
position: 126206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:126153-126206:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:125957-126067:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:125620-125691:-1:exon

MLLT11
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: MLLT11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 129072..132915
location: region:129072-132915:1
so has part: feature:129072-132915:1:exon
subclass of: SO_0000010

121060675
type: Gene
SIO_000068: ncbigene

position:129072:1
position: 129072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:132915:1
position: 132915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:129072-132915:1:exon

MLLT11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: MLLT11
product: MLLT11 transcription factor 7 cofactor, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 39 long SRA reads, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538656.1
SIO_010081: MLLT11
subclass of: SO_0000673
so part of: MLLT11
location: join(129072..129308,130240..132915)
location: region:129072-132915:1
so has part: feature:129072-129308:1:exon
so has part: feature:130240-132915:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:129072-129308:1:exon

position:129308:1
position: 129308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:130240-132915:1:exon

position:130240:1
position: 130240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MLLT11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: MLLT11
product: MLLT11 transcription factor 7 cofactor, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_040538657.1
SIO_010081: MLLT11
subclass of: SO_0000673
so part of: MLLT11
location: join(129414..129837,130240..132915)
location: region:129414-132915:1
so has part: feature:129414-129837:1:exon
so has part: feature:130240-132915:1:exon

position:129414:1
position: 129414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:129414-129837:1:exon

position:129837:1
position: 129837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:130240-132915:1:exon

MLLT11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: MLLT11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein AF1q
translation: MLDTISNQYDSFIYWRMPIPRLELAELEGLGLGEGPLYTPRSGLAKLPGPREAAAQGSSAEEDSLLPFNSFNFWRAPIASISSFDFDLI
SIO_010081: MLLT11
subclass of: SO_0000673
so part of: MLLT11
location: 130247..130516
location: region:130247-130516:1
so has part: feature:130247-130516:1:exon

XP_040394590.1
type: Protein
SIO_000068: ncbiprotein

position:130247:1
position: 130247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:130516:1
position: 130516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:130247-130516:1:exon

MLLT11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: MLLT11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein AF1q
translation: MLDTISNQYDSFIYWRMPIPRLELAELEGLGLGEGPLYTPRSGLAKLPGPREAAAQGSSAEEDSLLPFNSFNFWRAPIASISSFDFDLI
SIO_010081: MLLT11
subclass of: SO_0000673
so part of: MLLT11
location: 130247..130516
location: region:130247-130516:1
so has part: feature:130247-130516:1:exon

XP_040394591.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:130247-130516:1:exon

GABPB2
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: GABPB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 135031..152075
location: region:135031-152075:1
so has part: feature:135031-152075:1:exon
subclass of: SO_0000010

121060669
type: Gene
SIO_000068: ncbigene

position:135031:1
position: 135031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:152075:1
position: 152075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:135031-152075:1:exon

GABPB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: GABPB2
product: GA binding protein transcription factor subunit beta 2, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 57 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_040538644.1
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(135031..135104,135677..135934,136971..137033,137299..137438,138550..138717,139080..139274,140561..140711,143404..143517,144944..145129,146621..146754,147584..152075)
location: region:135031-152075:1
so has part: feature:135031-135104:1:exon
so has part: feature:135677-135934:1:exon
so has part: feature:136971-137033:1:exon
so has part: feature:137299-137438:1:exon
so has part: feature:138550-138717:1:exon
so has part: feature:139080-139274:1:exon
so has part: feature:140561-140711:1:exon
so has part: feature:143404-143517:1:exon
so has part: feature:144944-145129:1:exon
so has part: feature:146621-146754:1:exon
so has part: feature:147584-152075:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:135031-135104:1:exon

position:135104:1
position: 135104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:135677-135934:1:exon

position:135677:1
position: 135677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:135934:1
position: 135934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:136971-137033:1:exon

position:136971:1
position: 136971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:137033:1
position: 137033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:137299-137438:1:exon

position:137299:1
position: 137299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:137438:1
position: 137438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:138550-138717:1:exon

position:138550:1
position: 138550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:138717:1
position: 138717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:139080-139274:1:exon

position:139080:1
position: 139080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:139274:1
position: 139274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:140561-140711:1:exon

position:140561:1
position: 140561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:140711:1
position: 140711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:143404-143517:1:exon

position:143404:1
position: 143404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:143517:1
position: 143517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:144944-145129:1:exon

position:144944:1
position: 144944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:145129:1
position: 145129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:146621-146754:1:exon

position:146621:1
position: 146621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:146754:1
position: 146754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:147584-152075:1:exon

position:147584:1
position: 147584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GABPB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: GABPB2
product: GA binding protein transcription factor subunit beta 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_040538637.1
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(135040..135104,136971..137033,137299..137438,138550..138717,139080..139274,140561..140711,143401..143517,144944..145129,146621..146754,147584..152075)
location: region:135040-152075:1
so has part: feature:135040-135104:1:exon
so has part: feature:136971-137033:1:exon
so has part: feature:137299-137438:1:exon
so has part: feature:138550-138717:1:exon
so has part: feature:139080-139274:1:exon
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so has part: feature:146621-146754:1:exon
so has part: feature:147584-152075:1:exon

position:135040:1
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reference: sequence
type: ForwardStrandPosition
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urn:…
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urn:…
SIO_000300: 8
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urn:…
SIO_000300: 10
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GABPB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: GABPB2
product: GA binding protein transcription factor subunit beta 2, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_040538645.1
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(135041..135104,136971..137033,137299..137438,138550..138717,139080..139274,140561..140711,143404..143517,144944..145129,146621..146754,147584..152075)
location: region:135041-152075:1
so has part: feature:135041-135104:1:exon
so has part: feature:136971-137033:1:exon
so has part: feature:137299-137438:1:exon
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so has part: feature:139080-139274:1:exon
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position:135041:1
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reference: sequence
type: ForwardStrandPosition
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urn:…
SIO_000300: 1
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SIO_000300: 2
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SIO_000300: 3
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SIO_000300: 10
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GABPB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: GABPB2
product: GA binding protein transcription factor subunit beta 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_040538638.1
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(135045..135104,135677..135934,136971..137033,137296..137438,138550..138717,139080..139274,140561..140711,143401..143517,144944..145129,146621..146754,147584..152075)
location: region:135045-152075:1
so has part: feature:135045-135104:1:exon
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position:135045:1
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reference: sequence
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urn:…
SIO_000300: 1
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reference: sequence
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SIO_000300: 6
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GABPB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: GABPB2
product: GA binding protein transcription factor subunit beta 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_040538636.1
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(135045..135104,135677..135934,136971..137033,137299..137438,138550..138717,139080..139274,140561..140711,143401..143517,144944..145129,146621..146754,147584..152075)
location: region:135045-152075:1
so has part: feature:135045-135104:1:exon
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urn:…
SIO_000300: 1
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SIO_000300: 2
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SIO_000300: 7
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SIO_000300: 8
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SIO_000300: 9
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SIO_000300: 10
SIO_000628: feature:146621-146754:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:147584-152075:1:exon

GABPB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: GABPB2
product: GA binding protein transcription factor subunit beta 2, transcript variant X10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_040538646.1
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(135050..135104,135677..135934,136971..137033,137296..137438,138550..138717,139080..139274,140561..140711,143404..143517,144944..145129,146621..146754,147584..152075)
location: region:135050-152075:1
so has part: feature:135050-135104:1:exon
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position:135050:1
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reference: sequence
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urn:…
SIO_000300: 1
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SIO_000300: 7
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SIO_000300: 9
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SIO_000300: 10
SIO_000628: feature:146621-146754:1:exon

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SIO_000300: 11
SIO_000628: feature:147584-152075:1:exon

GABPB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: GABPB2
product: GA binding protein transcription factor subunit beta 2, transcript variant X11
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_040538647.1
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(135061..135104,136971..137033,137296..137438,138550..138717,139080..139274,140561..140711,143404..143517,144944..145129,146621..146754,147584..152075)
location: region:135061-152075:1
so has part: feature:135061-135104:1:exon
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reference: sequence
type: ForwardStrandPosition
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urn:…
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GABPB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: GABPB2
product: GA binding protein transcription factor subunit beta 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_040538639.1
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(135070..135104,136971..137033,137296..137438,138550..138717,139080..139274,140561..140711,143401..143517,144944..145129,146621..146754,147584..152075)
location: region:135070-152075:1
so has part: feature:135070-135104:1:exon
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reference: sequence
type: ForwardStrandPosition
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urn:…
SIO_000300: 1
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SIO_000300: 2
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SIO_000300: 10
SIO_000628: feature:147584-152075:1:exon

GABPB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: GABPB2
product: GA binding protein transcription factor subunit beta 2, transcript variant X12
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_040538648.1
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(135088..135104,136971..137438,138550..138717,139080..139274,140561..140711,143404..143517,144944..145129,146621..146754,147584..152075)
location: region:135088-152075:1
so has part: feature:135088-135104:1:exon
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reference: sequence
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urn:…
SIO_000300: 1
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urn:…
SIO_000300: 2
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SIO_000300: 9
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GABPB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: GABPB2
product: GA binding protein transcription factor subunit beta 2, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538641.1
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(135586..137033,137299..137438,138550..138717,139080..139274,140561..140711,143401..143517,144944..145129,146621..146754,147584..152075)
location: region:135586-152075:1
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position:135586:1
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reference: sequence
type: ForwardStrandPosition
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urn:…
SIO_000300: 1
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urn:…
SIO_000300: 2
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urn:…
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GABPB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: GABPB2
product: GA binding protein transcription factor subunit beta 2, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_040538643.1
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(135586..136818,136971..137033,137296..137438,138550..138717,139080..139274,140561..140711,143401..143517,144944..145129,146621..146754,147584..152075)
location: region:135586-152075:1
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urn:…
SIO_000300: 1
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position:136818:1
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reference: sequence
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urn:…
SIO_000300: 2
SIO_000628: feature:136971-137033:1:exon

urn:…
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urn:…
SIO_000300: 6
SIO_000628: feature:140561-140711:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:143401-143517:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:144944-145129:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:146621-146754:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:147584-152075:1:exon

GABPB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: GABPB2
product: GA binding protein transcription factor subunit beta 2, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_040538642.1
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(135586..136818,136971..137033,137299..137438,138550..138717,139080..139274,140561..140711,143401..143517,144944..145129,146621..146754,147584..152075)
location: region:135586-152075:1
so has part: feature:135586-136818:1:exon
so has part: feature:136971-137033:1:exon
so has part: feature:137299-137438:1:exon
so has part: feature:138550-138717:1:exon
so has part: feature:139080-139274:1:exon
so has part: feature:140561-140711:1:exon
so has part: feature:143401-143517:1:exon
so has part: feature:144944-145129:1:exon
so has part: feature:146621-146754:1:exon
so has part: feature:147584-152075:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:135586-136818:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:136971-137033:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:137299-137438:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:138550-138717:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:139080-139274:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:140561-140711:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:143401-143517:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:144944-145129:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:146621-146754:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:147584-152075:1:exon

GABPB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: GABPB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GA-binding protein subunit beta-2 isoform X1
translation: MSLVDLGKRLLEAARKGEDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRAGVSRDARTKVDRTPLHMAAADGHTHIVELLIRNGADVNAKDMLKMTALHWATEHNHRDVVELLIKYGADVHAFSKFDKSAFDIALDKNNPETLVILQEAMQNQVNTHPERAHPVTNTVTVTSPFILAPGEVLNLASLVSSANAKTTAAGDSRVSTVQFSNSTTSVLATLAALAEASAPLSNSNRATGNTEEIVEANSVDSAIQQVVGSGGQRVITIVTDGVPLGTLQTAVPTSSLSQPFIVTMEDGQQVLTVPAGQVAEETIIEDGDDAEEEEEPLAKKQKVEQNVNDLEESKDSDEREVLQQQLQEANRKAQEYRSQLIKKEQEAEQYRLKLAAMVRQQPNGAEVAVLEEVAEVDTVVVTSEDIEGSALPMMEMDQPTDITVETVTS
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(137331..137438,138550..138717,139080..139274,140561..140711,143401..143517,144944..145129,146621..146754,147584..147871)
location: region:137331-147871:1
so has part: feature:137331-137438:1:exon
so has part: feature:138550-138717:1:exon
so has part: feature:139080-139274:1:exon
so has part: feature:140561-140711:1:exon
so has part: feature:143401-143517:1:exon
so has part: feature:144944-145129:1:exon
so has part: feature:146621-146754:1:exon
so has part: feature:147584-147871:1:exon

XP_040394570.1
type: Protein
SIO_000068: ncbiprotein

position:137331:1
position: 137331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:147871:1
position: 147871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:137331-137438:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:138550-138717:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:139080-139274:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:140561-140711:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:143401-143517:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:144944-145129:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:146621-146754:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:147584-147871:1:exon

GABPB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: GABPB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GA-binding protein subunit beta-2 isoform X1
translation: MSLVDLGKRLLEAARKGEDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRAGVSRDARTKVDRTPLHMAAADGHTHIVELLIRNGADVNAKDMLKMTALHWATEHNHRDVVELLIKYGADVHAFSKFDKSAFDIALDKNNPETLVILQEAMQNQVNTHPERAHPVTNTVTVTSPFILAPGEVLNLASLVSSANAKTTAAGDSRVSTVQFSNSTTSVLATLAALAEASAPLSNSNRATGNTEEIVEANSVDSAIQQVVGSGGQRVITIVTDGVPLGTLQTAVPTSSLSQPFIVTMEDGQQVLTVPAGQVAEETIIEDGDDAEEEEEPLAKKQKVEQNVNDLEESKDSDEREVLQQQLQEANRKAQEYRSQLIKKEQEAEQYRLKLAAMVRQQPNGAEVAVLEEVAEVDTVVVTSEDIEGSALPMMEMDQPTDITVETVTS
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(137331..137438,138550..138717,139080..139274,140561..140711,143401..143517,144944..145129,146621..146754,147584..147871)
location: region:137331-147871:1
so has part: feature:137331-137438:1:exon
so has part: feature:138550-138717:1:exon
so has part: feature:139080-139274:1:exon
so has part: feature:140561-140711:1:exon
so has part: feature:143401-143517:1:exon
so has part: feature:144944-145129:1:exon
so has part: feature:146621-146754:1:exon
so has part: feature:147584-147871:1:exon

XP_040394571.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:137331-137438:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:138550-138717:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:139080-139274:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:140561-140711:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:143401-143517:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:144944-145129:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:146621-146754:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:147584-147871:1:exon

GABPB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: GABPB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GA-binding protein subunit beta-2 isoform X1
translation: MSLVDLGKRLLEAARKGEDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRAGVSRDARTKVDRTPLHMAAADGHTHIVELLIRNGADVNAKDMLKMTALHWATEHNHRDVVELLIKYGADVHAFSKFDKSAFDIALDKNNPETLVILQEAMQNQVNTHPERAHPVTNTVTVTSPFILAPGEVLNLASLVSSANAKTTAAGDSRVSTVQFSNSTTSVLATLAALAEASAPLSNSNRATGNTEEIVEANSVDSAIQQVVGSGGQRVITIVTDGVPLGTLQTAVPTSSLSQPFIVTMEDGQQVLTVPAGQVAEETIIEDGDDAEEEEEPLAKKQKVEQNVNDLEESKDSDEREVLQQQLQEANRKAQEYRSQLIKKEQEAEQYRLKLAAMVRQQPNGAEVAVLEEVAEVDTVVVTSEDIEGSALPMMEMDQPTDITVETVTS
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(137331..137438,138550..138717,139080..139274,140561..140711,143401..143517,144944..145129,146621..146754,147584..147871)
location: region:137331-147871:1
so has part: feature:137331-137438:1:exon
so has part: feature:138550-138717:1:exon
so has part: feature:139080-139274:1:exon
so has part: feature:140561-140711:1:exon
so has part: feature:143401-143517:1:exon
so has part: feature:144944-145129:1:exon
so has part: feature:146621-146754:1:exon
so has part: feature:147584-147871:1:exon

XP_040394572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:137331-137438:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:138550-138717:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:139080-139274:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:140561-140711:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:143401-143517:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:144944-145129:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:146621-146754:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:147584-147871:1:exon

GABPB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: GABPB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GA-binding protein subunit beta-2 isoform X1
translation: MSLVDLGKRLLEAARKGEDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRAGVSRDARTKVDRTPLHMAAADGHTHIVELLIRNGADVNAKDMLKMTALHWATEHNHRDVVELLIKYGADVHAFSKFDKSAFDIALDKNNPETLVILQEAMQNQVNTHPERAHPVTNTVTVTSPFILAPGEVLNLASLVSSANAKTTAAGDSRVSTVQFSNSTTSVLATLAALAEASAPLSNSNRATGNTEEIVEANSVDSAIQQVVGSGGQRVITIVTDGVPLGTLQTAVPTSSLSQPFIVTMEDGQQVLTVPAGQVAEETIIEDGDDAEEEEEPLAKKQKVEQNVNDLEESKDSDEREVLQQQLQEANRKAQEYRSQLIKKEQEAEQYRLKLAAMVRQQPNGAEVAVLEEVAEVDTVVVTSEDIEGSALPMMEMDQPTDITVETVTS
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(137331..137438,138550..138717,139080..139274,140561..140711,143401..143517,144944..145129,146621..146754,147584..147871)
location: region:137331-147871:1
so has part: feature:137331-137438:1:exon
so has part: feature:138550-138717:1:exon
so has part: feature:139080-139274:1:exon
so has part: feature:140561-140711:1:exon
so has part: feature:143401-143517:1:exon
so has part: feature:144944-145129:1:exon
so has part: feature:146621-146754:1:exon
so has part: feature:147584-147871:1:exon

XP_040394573.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:137331-137438:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:138550-138717:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:139080-139274:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:140561-140711:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:143401-143517:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:144944-145129:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:146621-146754:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:147584-147871:1:exon

GABPB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: GABPB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GA-binding protein subunit beta-2 isoform X1
translation: MSLVDLGKRLLEAARKGEDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRAGVSRDARTKVDRTPLHMAAADGHTHIVELLIRNGADVNAKDMLKMTALHWATEHNHRDVVELLIKYGADVHAFSKFDKSAFDIALDKNNPETLVILQEAMQNQVNTHPERAHPVTNTVTVTSPFILAPGEVLNLASLVSSANAKTTAAGDSRVSTVQFSNSTTSVLATLAALAEASAPLSNSNRATGNTEEIVEANSVDSAIQQVVGSGGQRVITIVTDGVPLGTLQTAVPTSSLSQPFIVTMEDGQQVLTVPAGQVAEETIIEDGDDAEEEEEPLAKKQKVEQNVNDLEESKDSDEREVLQQQLQEANRKAQEYRSQLIKKEQEAEQYRLKLAAMVRQQPNGAEVAVLEEVAEVDTVVVTSEDIEGSALPMMEMDQPTDITVETVTS
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(137331..137438,138550..138717,139080..139274,140561..140711,143401..143517,144944..145129,146621..146754,147584..147871)
location: region:137331-147871:1
so has part: feature:137331-137438:1:exon
so has part: feature:138550-138717:1:exon
so has part: feature:139080-139274:1:exon
so has part: feature:140561-140711:1:exon
so has part: feature:143401-143517:1:exon
so has part: feature:144944-145129:1:exon
so has part: feature:146621-146754:1:exon
so has part: feature:147584-147871:1:exon

XP_040394575.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:137331-137438:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:138550-138717:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:139080-139274:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:140561-140711:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:143401-143517:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:144944-145129:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:146621-146754:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:147584-147871:1:exon

GABPB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: GABPB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GA-binding protein subunit beta-2 isoform X1
translation: MSLVDLGKRLLEAARKGEDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRAGVSRDARTKVDRTPLHMAAADGHTHIVELLIRNGADVNAKDMLKMTALHWATEHNHRDVVELLIKYGADVHAFSKFDKSAFDIALDKNNPETLVILQEAMQNQVNTHPERAHPVTNTVTVTSPFILAPGEVLNLASLVSSANAKTTAAGDSRVSTVQFSNSTTSVLATLAALAEASAPLSNSNRATGNTEEIVEANSVDSAIQQVVGSGGQRVITIVTDGVPLGTLQTAVPTSSLSQPFIVTMEDGQQVLTVPAGQVAEETIIEDGDDAEEEEEPLAKKQKVEQNVNDLEESKDSDEREVLQQQLQEANRKAQEYRSQLIKKEQEAEQYRLKLAAMVRQQPNGAEVAVLEEVAEVDTVVVTSEDIEGSALPMMEMDQPTDITVETVTS
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(137331..137438,138550..138717,139080..139274,140561..140711,143401..143517,144944..145129,146621..146754,147584..147871)
location: region:137331-147871:1
so has part: feature:137331-137438:1:exon
so has part: feature:138550-138717:1:exon
so has part: feature:139080-139274:1:exon
so has part: feature:140561-140711:1:exon
so has part: feature:143401-143517:1:exon
so has part: feature:144944-145129:1:exon
so has part: feature:146621-146754:1:exon
so has part: feature:147584-147871:1:exon

XP_040394576.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:137331-137438:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:138550-138717:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:139080-139274:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:140561-140711:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:143401-143517:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:144944-145129:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:146621-146754:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:147584-147871:1:exon

GABPB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: GABPB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GA-binding protein subunit beta-2 isoform X1
translation: MSLVDLGKRLLEAARKGEDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRAGVSRDARTKVDRTPLHMAAADGHTHIVELLIRNGADVNAKDMLKMTALHWATEHNHRDVVELLIKYGADVHAFSKFDKSAFDIALDKNNPETLVILQEAMQNQVNTHPERAHPVTNTVTVTSPFILAPGEVLNLASLVSSANAKTTAAGDSRVSTVQFSNSTTSVLATLAALAEASAPLSNSNRATGNTEEIVEANSVDSAIQQVVGSGGQRVITIVTDGVPLGTLQTAVPTSSLSQPFIVTMEDGQQVLTVPAGQVAEETIIEDGDDAEEEEEPLAKKQKVEQNVNDLEESKDSDEREVLQQQLQEANRKAQEYRSQLIKKEQEAEQYRLKLAAMVRQQPNGAEVAVLEEVAEVDTVVVTSEDIEGSALPMMEMDQPTDITVETVTS
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(137331..137438,138550..138717,139080..139274,140561..140711,143401..143517,144944..145129,146621..146754,147584..147871)
location: region:137331-147871:1
so has part: feature:137331-137438:1:exon
so has part: feature:138550-138717:1:exon
so has part: feature:139080-139274:1:exon
so has part: feature:140561-140711:1:exon
so has part: feature:143401-143517:1:exon
so has part: feature:144944-145129:1:exon
so has part: feature:146621-146754:1:exon
so has part: feature:147584-147871:1:exon

XP_040394577.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:137331-137438:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:138550-138717:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:139080-139274:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:140561-140711:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:143401-143517:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:144944-145129:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:146621-146754:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:147584-147871:1:exon

GABPB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: GABPB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GA-binding protein subunit beta-2 isoform X2
translation: MSLVDLGKRLLEAARKGEDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRAGVSRDARTKVDRTPLHMAAADGHTHIVELLIRNGADVNAKDMLKMTALHWATEHNHRDVVELLIKYGADVHAFSKFDKSAFDIALDKNNPETLVILQEAMQNQVNTHPERAHPVTNTVTVTSPFILAPGEVLNLASLVSSANAKTTAGDSRVSTVQFSNSTTSVLATLAALAEASAPLSNSNRATGNTEEIVEANSVDSAIQQVVGSGGQRVITIVTDGVPLGTLQTAVPTSSLSQPFIVTMEDGQQVLTVPAGQVAEETIIEDGDDAEEEEEPLAKKQKVEQNVNDLEESKDSDEREVLQQQLQEANRKAQEYRSQLIKKEQEAEQYRLKLAAMVRQQPNGAEVAVLEEVAEVDTVVVTSEDIEGSALPMMEMDQPTDITVETVTS
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(137331..137438,138550..138717,139080..139274,140561..140711,143404..143517,144944..145129,146621..146754,147584..147871)
location: region:137331-147871:1
so has part: feature:137331-137438:1:exon
so has part: feature:138550-138717:1:exon
so has part: feature:139080-139274:1:exon
so has part: feature:140561-140711:1:exon
so has part: feature:143404-143517:1:exon
so has part: feature:144944-145129:1:exon
so has part: feature:146621-146754:1:exon
so has part: feature:147584-147871:1:exon

XP_040394578.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:137331-137438:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:138550-138717:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:139080-139274:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:140561-140711:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:143404-143517:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:144944-145129:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:146621-146754:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:147584-147871:1:exon

GABPB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: GABPB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GA-binding protein subunit beta-2 isoform X2
translation: MSLVDLGKRLLEAARKGEDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRAGVSRDARTKVDRTPLHMAAADGHTHIVELLIRNGADVNAKDMLKMTALHWATEHNHRDVVELLIKYGADVHAFSKFDKSAFDIALDKNNPETLVILQEAMQNQVNTHPERAHPVTNTVTVTSPFILAPGEVLNLASLVSSANAKTTAGDSRVSTVQFSNSTTSVLATLAALAEASAPLSNSNRATGNTEEIVEANSVDSAIQQVVGSGGQRVITIVTDGVPLGTLQTAVPTSSLSQPFIVTMEDGQQVLTVPAGQVAEETIIEDGDDAEEEEEPLAKKQKVEQNVNDLEESKDSDEREVLQQQLQEANRKAQEYRSQLIKKEQEAEQYRLKLAAMVRQQPNGAEVAVLEEVAEVDTVVVTSEDIEGSALPMMEMDQPTDITVETVTS
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(137331..137438,138550..138717,139080..139274,140561..140711,143404..143517,144944..145129,146621..146754,147584..147871)
location: region:137331-147871:1
so has part: feature:137331-137438:1:exon
so has part: feature:138550-138717:1:exon
so has part: feature:139080-139274:1:exon
so has part: feature:140561-140711:1:exon
so has part: feature:143404-143517:1:exon
so has part: feature:144944-145129:1:exon
so has part: feature:146621-146754:1:exon
so has part: feature:147584-147871:1:exon

XP_040394579.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:137331-137438:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:138550-138717:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:139080-139274:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:140561-140711:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:143404-143517:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:144944-145129:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:146621-146754:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:147584-147871:1:exon

GABPB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: GABPB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GA-binding protein subunit beta-2 isoform X2
translation: MSLVDLGKRLLEAARKGEDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRAGVSRDARTKVDRTPLHMAAADGHTHIVELLIRNGADVNAKDMLKMTALHWATEHNHRDVVELLIKYGADVHAFSKFDKSAFDIALDKNNPETLVILQEAMQNQVNTHPERAHPVTNTVTVTSPFILAPGEVLNLASLVSSANAKTTAGDSRVSTVQFSNSTTSVLATLAALAEASAPLSNSNRATGNTEEIVEANSVDSAIQQVVGSGGQRVITIVTDGVPLGTLQTAVPTSSLSQPFIVTMEDGQQVLTVPAGQVAEETIIEDGDDAEEEEEPLAKKQKVEQNVNDLEESKDSDEREVLQQQLQEANRKAQEYRSQLIKKEQEAEQYRLKLAAMVRQQPNGAEVAVLEEVAEVDTVVVTSEDIEGSALPMMEMDQPTDITVETVTS
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(137331..137438,138550..138717,139080..139274,140561..140711,143404..143517,144944..145129,146621..146754,147584..147871)
location: region:137331-147871:1
so has part: feature:137331-137438:1:exon
so has part: feature:138550-138717:1:exon
so has part: feature:139080-139274:1:exon
so has part: feature:140561-140711:1:exon
so has part: feature:143404-143517:1:exon
so has part: feature:144944-145129:1:exon
so has part: feature:146621-146754:1:exon
so has part: feature:147584-147871:1:exon

XP_040394580.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:137331-137438:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:138550-138717:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:139080-139274:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:140561-140711:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:143404-143517:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:144944-145129:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:146621-146754:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:147584-147871:1:exon

GABPB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: GABPB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GA-binding protein subunit beta-2 isoform X2
translation: MSLVDLGKRLLEAARKGEDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRAGVSRDARTKVDRTPLHMAAADGHTHIVELLIRNGADVNAKDMLKMTALHWATEHNHRDVVELLIKYGADVHAFSKFDKSAFDIALDKNNPETLVILQEAMQNQVNTHPERAHPVTNTVTVTSPFILAPGEVLNLASLVSSANAKTTAGDSRVSTVQFSNSTTSVLATLAALAEASAPLSNSNRATGNTEEIVEANSVDSAIQQVVGSGGQRVITIVTDGVPLGTLQTAVPTSSLSQPFIVTMEDGQQVLTVPAGQVAEETIIEDGDDAEEEEEPLAKKQKVEQNVNDLEESKDSDEREVLQQQLQEANRKAQEYRSQLIKKEQEAEQYRLKLAAMVRQQPNGAEVAVLEEVAEVDTVVVTSEDIEGSALPMMEMDQPTDITVETVTS
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(137331..137438,138550..138717,139080..139274,140561..140711,143404..143517,144944..145129,146621..146754,147584..147871)
location: region:137331-147871:1
so has part: feature:137331-137438:1:exon
so has part: feature:138550-138717:1:exon
so has part: feature:139080-139274:1:exon
so has part: feature:140561-140711:1:exon
so has part: feature:143404-143517:1:exon
so has part: feature:144944-145129:1:exon
so has part: feature:146621-146754:1:exon
so has part: feature:147584-147871:1:exon

XP_040394581.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:137331-137438:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:138550-138717:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:139080-139274:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:140561-140711:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:143404-143517:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:144944-145129:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:146621-146754:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:147584-147871:1:exon

GABPB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: GABPB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: GA-binding protein subunit beta-2 isoform X2
translation: MSLVDLGKRLLEAARKGEDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRAGVSRDARTKVDRTPLHMAAADGHTHIVELLIRNGADVNAKDMLKMTALHWATEHNHRDVVELLIKYGADVHAFSKFDKSAFDIALDKNNPETLVILQEAMQNQVNTHPERAHPVTNTVTVTSPFILAPGEVLNLASLVSSANAKTTAGDSRVSTVQFSNSTTSVLATLAALAEASAPLSNSNRATGNTEEIVEANSVDSAIQQVVGSGGQRVITIVTDGVPLGTLQTAVPTSSLSQPFIVTMEDGQQVLTVPAGQVAEETIIEDGDDAEEEEEPLAKKQKVEQNVNDLEESKDSDEREVLQQQLQEANRKAQEYRSQLIKKEQEAEQYRLKLAAMVRQQPNGAEVAVLEEVAEVDTVVVTSEDIEGSALPMMEMDQPTDITVETVTS
SIO_010081: GABPB2
subclass of: SO_0000673
so part of: GABPB2
location: join(137331..137438,138550..138717,139080..139274,140561..140711,143404..143517,144944..145129,146621..146754,147584..147871)
location: region:137331-147871:1
so has part: feature:137331-137438:1:exon
so has part: feature:138550-138717:1:exon
so has part: feature:139080-139274:1:exon
so has part: feature:140561-140711:1:exon
so has part: feature:143404-143517:1:exon
so has part: feature:144944-145129:1:exon
so has part: feature:146621-146754:1:exon
so has part: feature:147584-147871:1:exon

XP_040394582.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:137331-137438:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:138550-138717:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:139080-139274:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:140561-140711:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:143404-143517:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:144944-145129:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:146621-146754:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:147584-147871:1:exon

SEMA6C
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: SEMA6C
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(153384..159987)
location: region:153384-159987:-1
so has part: feature:153384-159987:-1:exon
subclass of: SO_0000010

121060667
type: Gene
SIO_000068: ncbigene

position:153384:-1
position: 153384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:159987:-1
position: 159987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:153384-159987:-1:exon

SEMA6C
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: SEMA6C
product: semaphorin 6C
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 12 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_040538634.1
SIO_010081: SEMA6C
subclass of: SO_0000673
so part of: SEMA6C
location: complement(join(153384..153789,154110..154157,154429..154482,154673..154750,154847..154984,155306..155524,155870..156029,156098..156225,156877..157094,157209..157297,157377..157499,157582..157672,157803..157904,158439..158495,158579..158636,159118..159233,159306..159987))
location: region:153384-159987:-1
so has part: feature:159306-159987:-1:exon
so has part: feature:159118-159233:-1:exon
so has part: feature:158579-158636:-1:exon
so has part: feature:158439-158495:-1:exon
so has part: feature:157803-157904:-1:exon
so has part: feature:157582-157672:-1:exon
so has part: feature:157377-157499:-1:exon
so has part: feature:157209-157297:-1:exon
so has part: feature:156877-157094:-1:exon
so has part: feature:156098-156225:-1:exon
so has part: feature:155870-156029:-1:exon
so has part: feature:155306-155524:-1:exon
so has part: feature:154847-154984:-1:exon
so has part: feature:154673-154750:-1:exon
so has part: feature:154429-154482:-1:exon
so has part: feature:154110-154157:-1:exon
so has part: feature:153384-153789:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:159306-159987:-1:exon

position:159306:-1
position: 159306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:159118-159233:-1:exon

position:159118:-1
position: 159118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:159233:-1
position: 159233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:158579-158636:-1:exon

position:158579:-1
position: 158579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:158636:-1
position: 158636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:158439-158495:-1:exon

position:158439:-1
position: 158439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:158495:-1
position: 158495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:157803-157904:-1:exon

position:157803:-1
position: 157803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:157904:-1
position: 157904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:157582-157672:-1:exon

position:157582:-1
position: 157582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:157672:-1
position: 157672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:157377-157499:-1:exon

position:157377:-1
position: 157377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:157499:-1
position: 157499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:157209-157297:-1:exon

position:157209:-1
position: 157209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:157297:-1
position: 157297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:156877-157094:-1:exon

position:156877:-1
position: 156877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:157094:-1
position: 157094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:156098-156225:-1:exon

position:156098:-1
position: 156098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:156225:-1
position: 156225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:155870-156029:-1:exon

position:155870:-1
position: 155870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:156029:-1
position: 156029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:155306-155524:-1:exon

position:155306:-1
position: 155306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:155524:-1
position: 155524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:154847-154984:-1:exon

position:154847:-1
position: 154847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:154984:-1
position: 154984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:154673-154750:-1:exon

position:154673:-1
position: 154673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:154750:-1
position: 154750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:154429-154482:-1:exon

position:154429:-1
position: 154429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:154482:-1
position: 154482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:154110-154157:-1:exon

position:154110:-1
position: 154110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:154157:-1
position: 154157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:153384-153789:-1:exon

position:153789:-1
position: 153789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SEMA6C
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: SEMA6C
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: semaphorin-6C
translation: MLGVLLAFVLILIVVPGAPRGVAQSFPRDLVPRSTVGLAATATYPRFGGLRGDNVTTQLGLDFQRMLRLNGTLFVAARDHIYAFDLGQDKRVLYPERHLTWETRDRESCAMRGKLQDGCHNYIRVLVPRDARTLFAAETTPSTPVCRSYEARSLLQEGEEVSGQARCPFDTRQSNVALFADGSLYSATVADFQASDAVIYRSLGARSPPLRTLKYSSRWLQEPHFVQALPYGPYIYFFFREIAVELGALGKVAVARVARVCRNDRGGSPRVLERRWTSFLKARLQCTVPGDAVFYFDVLEAVTLPHALHGRPAVLALFGTQPNSIPGSAVCAFYLADVGAGVRGHFAEPRGAAGAWPPCPRSGCPGPGLAAVLGWAQPLPLSPPETSLTRRWPSPRSTPLLHGAVAPLGGRPLFTRTGTRLTQLAVDVGAGPRGNHTVLFLGAEDGRVLKVLAATRSPGDVQNAGDTAAPGDTGEPGAEVLLLEEISLYEPRWCRGPRGASRVLGLELHPPGQELFVAFAGCLVRLPLSRCAQHGACRRSCLAARDPYCVWLPPGGCVPFSEDLPAGFEQMWRDPPAHRDLPRCTSYRGR
SIO_010081: SEMA6C
subclass of: SO_0000673
so part of: SEMA6C
location: complement(join(154133..154157,154429..154482,154673..154750,154847..154984,155306..155524,155870..156029,156098..156225,156877..157094,157209..157297,157377..157499,157582..157672,157803..157904,158439..158495,158579..158636,159118..159233,159306..159423))
location: region:154133-159423:-1
so has part: feature:159306-159423:-1:exon
so has part: feature:159118-159233:-1:exon
so has part: feature:158579-158636:-1:exon
so has part: feature:158439-158495:-1:exon
so has part: feature:157803-157904:-1:exon
so has part: feature:157582-157672:-1:exon
so has part: feature:157377-157499:-1:exon
so has part: feature:157209-157297:-1:exon
so has part: feature:156877-157094:-1:exon
so has part: feature:156098-156225:-1:exon
so has part: feature:155870-156029:-1:exon
so has part: feature:155306-155524:-1:exon
so has part: feature:154847-154984:-1:exon
so has part: feature:154673-154750:-1:exon
so has part: feature:154429-154482:-1:exon
so has part: feature:154133-154157:-1:exon

XP_040394568.1
type: Protein
SIO_000068: ncbiprotein

position:154133:-1
position: 154133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:159423:-1
position: 159423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:159306-159423:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:159118-159233:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:158579-158636:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:158439-158495:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:157803-157904:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:157582-157672:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:157377-157499:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:157209-157297:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:156877-157094:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:156098-156225:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:155870-156029:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:155306-155524:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:154847-154984:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:154673-154750:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:154429-154482:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:154133-154157:-1:exon

LYSMD1
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: LYSMD1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(160975..162405)
location: region:160975-162405:-1
so has part: feature:160975-162405:-1:exon
subclass of: SO_0000010

121060674
type: Gene
SIO_000068: ncbigene

position:160975:-1
position: 160975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:162405:-1
position: 162405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160975-162405:-1:exon

LYSMD1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LYSMD1
product: LysM domain containing 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538655.1
SIO_010081: LYSMD1
subclass of: SO_0000673
so part of: LYSMD1
location: complement(join(160975..161529,161616..161884,162252..162405))
location: region:160975-162405:-1
so has part: feature:162252-162405:-1:exon
so has part: feature:161616-161884:-1:exon
so has part: feature:160975-161529:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:162252-162405:-1:exon

position:162252:-1
position: 162252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:161616-161884:-1:exon

position:161616:-1
position: 161616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:161884:-1
position: 161884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:160975-161529:-1:exon

position:161529:-1
position: 161529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LYSMD1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LYSMD1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lysM and putative peptidoglycan-binding domain-containing protein 1
translation: MAGPPPARGAAGAREHRLEPGDTLPGLALRYGVTTEQIVRANRLYSSDTIFLKPTLLIPAPARPGGLRRQEEAVGTPAGPGDTAAAPAPSRHDLSATDFLRQLDAEIGRSKAAAAQRLRAGSTGTAEAEGTQPPEAGSPRGPRLGPRPLTRTPRAAALRDAEDEIFTL
SIO_010081: LYSMD1
subclass of: SO_0000673
so part of: LYSMD1
location: complement(join(161394..161529,161616..161884,162252..162353))
location: region:161394-162353:-1
so has part: feature:162252-162353:-1:exon
so has part: feature:161616-161884:-1:exon
so has part: feature:161394-161529:-1:exon

XP_040394589.1
type: Protein
SIO_000068: ncbiprotein

position:161394:-1
position: 161394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:162353:-1
position: 162353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:162252-162353:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:161616-161884:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:161394-161529:-1:exon

SCNM1
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: SCNM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 162713..166248
location: region:162713-166248:1
so has part: feature:162713-166248:1:exon
subclass of: SO_0000010

121060673
type: Gene
SIO_000068: ncbigene

position:162713:1
position: 162713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:166248:1
position: 166248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:162713-166248:1:exon

SCNM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: SCNM1
product: sodium channel modifier 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538654.1
SIO_010081: SCNM1
subclass of: SO_0000673
so part of: SCNM1
location: join(162713..162863,163344..163414,163492..163580,163663..163760,163832..163926,164033..164169,164261..164396,164465..166248)
location: region:162713-166248:1
so has part: feature:162713-162863:1:exon
so has part: feature:163344-163414:1:exon
so has part: feature:163492-163580:1:exon
so has part: feature:163663-163760:1:exon
so has part: feature:163832-163926:1:exon
so has part: feature:164033-164169:1:exon
so has part: feature:164261-164396:1:exon
so has part: feature:164465-166248:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:162713-162863:1:exon

position:162863:1
position: 162863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:163344-163414:1:exon

position:163344:1
position: 163344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:163414:1
position: 163414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:163492-163580:1:exon

position:163492:1
position: 163492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:163580:1
position: 163580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:163663-163760:1:exon

position:163663:1
position: 163663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:163760:1
position: 163760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:163832-163926:1:exon

position:163832:1
position: 163832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:163926:1
position: 163926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:164033-164169:1:exon

position:164033:1
position: 164033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:164169:1
position: 164169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:164261-164396:1:exon

position:164261:1
position: 164261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:164396:1
position: 164396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:164465-166248:1:exon

position:164465:1
position: 164465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SCNM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: SCNM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sodium channel modifier 1
translation: MSFKRDGDEPGQLAALQKRRVADLLANYIPEDEALLLRSGRYACTVCAHRPVFDTLEVLAVHRAGRKHLGSLQRCYGSERWREDAAQEQRHEELVRVEVAGAQGSPAPLLARTRRIAQSALLKAAPYSSCCRRTGAAGSGARGVRTQPGPSTAQAPSQEDRGAVEATPAALLPGHCSRQAGALKAASTHAGQGRKGKAASSSPPSEPEALSPARRQALERYLQLRSAGWIQDRSGKWVKDENAEFDSDEDEPPALLPA
SIO_010081: SCNM1
subclass of: SO_0000673
so part of: SCNM1
location: join(162813..162863,163344..163414,163492..163580,163663..163760,163832..163926,164033..164169,164261..164396,164465..164564)
location: region:162813-164564:1
so has part: feature:162813-162863:1:exon
so has part: feature:163344-163414:1:exon
so has part: feature:163492-163580:1:exon
so has part: feature:163663-163760:1:exon
so has part: feature:163832-163926:1:exon
so has part: feature:164033-164169:1:exon
so has part: feature:164261-164396:1:exon
so has part: feature:164465-164564:1:exon

XP_040394588.1
type: Protein
SIO_000068: ncbiprotein

position:162813:1
position: 162813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:164564:1
position: 164564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:162813-162863:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:163344-163414:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:163492-163580:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:163663-163760:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:163832-163926:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:164033-164169:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:164261-164396:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:164465-164564:1:exon

TMOD4
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: TMOD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(165627..169987)
location: region:165627-169987:-1
so has part: feature:165627-169987:-1:exon
subclass of: SO_0000010

121060670
type: Gene
SIO_000068: ncbigene

position:165627:-1
position: 165627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:169987:-1
position: 169987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165627-169987:-1:exon

TMOD4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: TMOD4
product: tropomodulin 4, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_040538649.1
SIO_010081: TMOD4
subclass of: SO_0000673
so part of: TMOD4
location: complement(join(165627..165807,165925..166301,166497..166604,167135..167265,167468..167557,167841..167963,168453..168609,168693..168836,169447..169987))
location: region:165627-169987:-1
so has part: feature:169447-169987:-1:exon
so has part: feature:168693-168836:-1:exon
so has part: feature:168453-168609:-1:exon
so has part: feature:167841-167963:-1:exon
so has part: feature:167468-167557:-1:exon
so has part: feature:167135-167265:-1:exon
so has part: feature:166497-166604:-1:exon
so has part: feature:165925-166301:-1:exon
so has part: feature:165627-165807:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:169447-169987:-1:exon

position:169447:-1
position: 169447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:168693-168836:-1:exon

position:168693:-1
position: 168693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:168836:-1
position: 168836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:168453-168609:-1:exon

position:168453:-1
position: 168453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:168609:-1
position: 168609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:167841-167963:-1:exon

position:167841:-1
position: 167841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:167963:-1
position: 167963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:167468-167557:-1:exon

position:167468:-1
position: 167468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:167557:-1
position: 167557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:167135-167265:-1:exon

position:167135:-1
position: 167135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:167265:-1
position: 167265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:166497-166604:-1:exon

position:166497:-1
position: 166497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:166604:-1
position: 166604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:165925-166301:-1:exon

position:165925:-1
position: 165925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:166301:-1
position: 166301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:165627-165807:-1:exon

position:165807:-1
position: 165807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TMOD4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: TMOD4
product: tropomodulin 4, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_040538650.1
SIO_010081: TMOD4
subclass of: SO_0000673
so part of: TMOD4
location: complement(join(165627..165807,165925..166301,166497..166604,167135..167265,167468..167557,167841..167963,168453..168609,168693..169987))
location: region:165627-169987:-1
so has part: feature:168693-169987:-1:exon
so has part: feature:168453-168609:-1:exon
so has part: feature:167841-167963:-1:exon
so has part: feature:167468-167557:-1:exon
so has part: feature:167135-167265:-1:exon
so has part: feature:166497-166604:-1:exon
so has part: feature:165925-166301:-1:exon
so has part: feature:165627-165807:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:168693-169987:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:168453-168609:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:167841-167963:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:167468-167557:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:167135-167265:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:166497-166604:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:165925-166301:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:165627-165807:-1:exon

TMOD4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: TMOD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tropomodulin-4 isoform X1
translation: MTSYRQELEKYRDIDEDKILRELSAEELEQLDTELLEMDPENVLLPAGLRQRDQTQKSPTGPLDREALLQHLEKQALEAGEREDLVPFTGEKKGKPFVPKNPKREIPREEQITLEPELEEALANATEAEMCDIAAILGMYTLMSNKQYYDAICSGTISNTEGINSVVKPDTYKPVPDEPPNPTNVEETLRKIQANDGALEDVNLNNIKDIPISTLKAICEAMKTNTHVKKLSLVATRSNDPVATAVAEMLTENKTLQSLNIESNFITSAGMMSIIKAVYQNNTLSELKVDNQVGTGTHGRPGARAQFAQRAQFGTLCPCPAVPAAGRHSGDGDGDDAGAVPLRGALRVPLHTAGPPCPRRHRHHPQQRAPSQAEENLNASHHSPADPGAQLAPEPRFGLPRAGSAVNKGYGDTGSEAALGTGPQGRGQD
SIO_010081: TMOD4
subclass of: SO_0000673
so part of: TMOD4
location: complement(join(165627..165807,165925..166301,166497..166604,167135..167265,167468..167557,167841..167963,168453..168609,168693..168815))
location: region:165627-168815:-1
so has part: feature:168693-168815:-1:exon
so has part: feature:168453-168609:-1:exon
so has part: feature:167841-167963:-1:exon
so has part: feature:167468-167557:-1:exon
so has part: feature:167135-167265:-1:exon
so has part: feature:166497-166604:-1:exon
so has part: feature:165925-166301:-1:exon
so has part: feature:165627-165807:-1:exon

XP_040394583.1
type: Protein
SIO_000068: ncbiprotein

position:168815:-1
position: 168815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:168693-168815:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:168453-168609:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:167841-167963:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:167468-167557:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:167135-167265:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:166497-166604:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:165925-166301:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:165627-165807:-1:exon

TMOD4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: TMOD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tropomodulin-4 isoform X1
translation: MTSYRQELEKYRDIDEDKILRELSAEELEQLDTELLEMDPENVLLPAGLRQRDQTQKSPTGPLDREALLQHLEKQALEAGEREDLVPFTGEKKGKPFVPKNPKREIPREEQITLEPELEEALANATEAEMCDIAAILGMYTLMSNKQYYDAICSGTISNTEGINSVVKPDTYKPVPDEPPNPTNVEETLRKIQANDGALEDVNLNNIKDIPISTLKAICEAMKTNTHVKKLSLVATRSNDPVATAVAEMLTENKTLQSLNIESNFITSAGMMSIIKAVYQNNTLSELKVDNQVGTGTHGRPGARAQFAQRAQFGTLCPCPAVPAAGRHSGDGDGDDAGAVPLRGALRVPLHTAGPPCPRRHRHHPQQRAPSQAEENLNASHHSPADPGAQLAPEPRFGLPRAGSAVNKGYGDTGSEAALGTGPQGRGQD
SIO_010081: TMOD4
subclass of: SO_0000673
so part of: TMOD4
location: complement(join(165627..165807,165925..166301,166497..166604,167135..167265,167468..167557,167841..167963,168453..168609,168693..168815))
location: region:165627-168815:-1
so has part: feature:168693-168815:-1:exon
so has part: feature:168453-168609:-1:exon
so has part: feature:167841-167963:-1:exon
so has part: feature:167468-167557:-1:exon
so has part: feature:167135-167265:-1:exon
so has part: feature:166497-166604:-1:exon
so has part: feature:165925-166301:-1:exon
so has part: feature:165627-165807:-1:exon

XP_040394584.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:168693-168815:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:168453-168609:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:167841-167963:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:167468-167557:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:167135-167265:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:166497-166604:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:165925-166301:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:165627-165807:-1:exon

TMOD4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: TMOD4
product: tropomodulin 4, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_040538652.1
SIO_010081: TMOD4
subclass of: SO_0000673
so part of: TMOD4
location: complement(join(165679..165807,165925..166069,166158..166301,166497..166604,167135..167265,167468..167557,167841..167963,168453..168609,168693..168836,169447..169987))
location: region:165679-169987:-1
so has part: feature:169447-169987:-1:exon
so has part: feature:168693-168836:-1:exon
so has part: feature:168453-168609:-1:exon
so has part: feature:167841-167963:-1:exon
so has part: feature:167468-167557:-1:exon
so has part: feature:167135-167265:-1:exon
so has part: feature:166497-166604:-1:exon
so has part: feature:166158-166301:-1:exon
so has part: feature:165925-166069:-1:exon
so has part: feature:165679-165807:-1:exon

position:165679:-1
position: 165679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:169447-169987:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:168693-168836:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:168453-168609:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:167841-167963:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:167468-167557:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:167135-167265:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:166497-166604:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:166158-166301:-1:exon

position:166158:-1
position: 166158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:165925-166069:-1:exon

position:166069:-1
position: 166069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:165679-165807:-1:exon

TMOD4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: TMOD4
product: tropomodulin 4, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_040538651.1
SIO_010081: TMOD4
subclass of: SO_0000673
so part of: TMOD4
location: complement(join(165679..166069,166158..166301,166497..166604,167135..167265,167468..167557,167841..167963,168453..168609,168693..168836,169447..169987))
location: region:165679-169987:-1
so has part: feature:169447-169987:-1:exon
so has part: feature:168693-168836:-1:exon
so has part: feature:168453-168609:-1:exon
so has part: feature:167841-167963:-1:exon
so has part: feature:167468-167557:-1:exon
so has part: feature:167135-167265:-1:exon
so has part: feature:166497-166604:-1:exon
so has part: feature:166158-166301:-1:exon
so has part: feature:165679-166069:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:169447-169987:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:168693-168836:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:168453-168609:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:167841-167963:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:167468-167557:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:167135-167265:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:166497-166604:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:166158-166301:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:165679-166069:-1:exon

TMOD4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: TMOD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tropomodulin-4 isoform X3
translation: MTSYRQELEKYRDIDEDKILRELSAEELEQLDTELLEMDPENVLLPAGLRQRDQTQKSPTGPLDREALLQHLEKQALEAGEREDLVPFTGEKKGKPFVPKNPKREIPREEQITLEPELEEALANATEAEMCDIAAILGMYTLMSNKQYYDAICSGTISNTEGINSVVKPDTYKPVPDEPPNPTNVEETLRKIQANDGALEDVNLNNIKDIPISTLKAICEAMKTNTHVKKLSLVATRSNDPVATAVAEMLTENKTLQSLNIESNFITSAGMMSIIKAVYQNNTLSELKVDNQCQRLGDTVEMEMATMLEQCPSVVRFGYHFTQQGPRARAAIAITRNNELRRKQKKT
SIO_010081: TMOD4
subclass of: SO_0000673
so part of: TMOD4
location: complement(join(165785..165807,165925..166069,166158..166301,166497..166604,167135..167265,167468..167557,167841..167963,168453..168609,168693..168815))
location: region:165785-168815:-1
so has part: feature:168693-168815:-1:exon
so has part: feature:168453-168609:-1:exon
so has part: feature:167841-167963:-1:exon
so has part: feature:167468-167557:-1:exon
so has part: feature:167135-167265:-1:exon
so has part: feature:166497-166604:-1:exon
so has part: feature:166158-166301:-1:exon
so has part: feature:165925-166069:-1:exon
so has part: feature:165785-165807:-1:exon

XP_040394586.1
type: Protein
SIO_000068: ncbiprotein

position:165785:-1
position: 165785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:168693-168815:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:168453-168609:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:167841-167963:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:167468-167557:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:167135-167265:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:166497-166604:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:166158-166301:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:165925-166069:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:165785-165807:-1:exon

TMOD4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: TMOD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tropomodulin-4 isoform X2
translation: MTSYRQELEKYRDIDEDKILRELSAEELEQLDTELLEMDPENVLLPAGLRQRDQTQKSPTGPLDREALLQHLEKQALEAGEREDLVPFTGEKKGKPFVPKNPKREIPREEQITLEPELEEALANATEAEMCDIAAILGMYTLMSNKQYYDAICSGTISNTEGINSVVKPDTYKPVPDEPPNPTNVEETLRKIQANDGALEDVNLNNIKDIPISTLKAICEAMKTNTHVKKLSLVATRSNDPVATAVAEMLTENKTLQSLNIESNFITSAGMMSIIKAVYQNNTLSELKVDNQCQRLGDTVEMEMATMLEQCPSVVRFGYHFTQQGPRARAAIAITRNNELRECPGAAPGRNGAGRGKNGFWGGRTALALALTCFFFPSPGRKQKKT
SIO_010081: TMOD4
subclass of: SO_0000673
so part of: TMOD4
location: complement(join(165785..166069,166158..166301,166497..166604,167135..167265,167468..167557,167841..167963,168453..168609,168693..168815))
location: region:165785-168815:-1
so has part: feature:168693-168815:-1:exon
so has part: feature:168453-168609:-1:exon
so has part: feature:167841-167963:-1:exon
so has part: feature:167468-167557:-1:exon
so has part: feature:167135-167265:-1:exon
so has part: feature:166497-166604:-1:exon
so has part: feature:166158-166301:-1:exon
so has part: feature:165785-166069:-1:exon

XP_040394585.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:168693-168815:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:168453-168609:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:167841-167963:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:167468-167557:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:167135-167265:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:166497-166604:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:166158-166301:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:165785-166069:-1:exon

VPS72
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: VPS72
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(170135..172427)
location: region:170135-172427:-1
so has part: feature:170135-172427:-1:exon
subclass of: SO_0000010

121060672
type: Gene
SIO_000068: ncbigene

position:170135:-1
position: 170135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:172427:-1
position: 172427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:170135-172427:-1:exon

VPS72
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: VPS72
product: vacuolar protein sorting 72 homolog
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 2 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538653.1
SIO_010081: VPS72
subclass of: SO_0000673
so part of: VPS72
location: complement(join(170135..170668,170928..171068,171148..171327,171434..171545,171823..171975,172232..172427))
location: region:170135-172427:-1
so has part: feature:172232-172427:-1:exon
so has part: feature:171823-171975:-1:exon
so has part: feature:171434-171545:-1:exon
so has part: feature:171148-171327:-1:exon
so has part: feature:170928-171068:-1:exon
so has part: feature:170135-170668:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:172232-172427:-1:exon

position:172232:-1
position: 172232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:171823-171975:-1:exon

position:171823:-1
position: 171823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:171975:-1
position: 171975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:171434-171545:-1:exon

position:171434:-1
position: 171434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:171545:-1
position: 171545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:171148-171327:-1:exon

position:171148:-1
position: 171148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:171327:-1
position: 171327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:170928-171068:-1:exon

position:170928:-1
position: 170928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:171068:-1
position: 171068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:170135-170668:-1:exon

position:170668:-1
position: 170668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

VPS72
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: VPS72
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 72 homolog
translation: MSLAEGRAPRRTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYRGDQSDSDDEVDSDFDIDEGEEPTSDQDESEPKRRRRIVTKAYREPLKSLRPKKADAPSSSSQKAREVKSAPLELQDEVGDSRKHMRQSTTEHTRQTFLRIQERQVQSKRKKGGPNYDRPLTQEELLEEAKITEEINLRSLENYERLEADKKKQVQKXRKCVGPVIRYWSVTMPLITELGKEENVDVEGLDQDLQQAEAAPAVAPASAGKCSRTFISFTDDETFERFFPKAKPPRLPVREICPVTHKPAVYRDPITDIPYSNIRAFKIIREAYKKYITAHGLPSAAASAALGAAPPGPDPGVRATRQKIIIKQSVPAT
SIO_010081: VPS72
subclass of: SO_0000673
so part of: VPS72
location: complement(join(170278..170668,170928..171068,171148..171327,171434..171545,171823..171975,172232..172348))
location: region:170278-172348:-1
so has part: feature:172232-172348:-1:exon
so has part: feature:171823-171975:-1:exon
so has part: feature:171434-171545:-1:exon
so has part: feature:171148-171327:-1:exon
so has part: feature:170928-171068:-1:exon
so has part: feature:170278-170668:-1:exon

XP_040394587.1
type: Protein
SIO_000068: ncbiprotein

position:170278:-1
position: 170278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:172348:-1
position: 172348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:172232-172348:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:171823-171975:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:171434-171545:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:171148-171327:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:170928-171068:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:170278-170668:-1:exon

PIP5K1A
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: PIP5K1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 172655..198127
location: region:172655-198127:1
so has part: feature:172655-198127:1:exon
subclass of: SO_0000010

121060678
type: Gene
SIO_000068: ncbigene

position:172655:1
position: 172655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:198127:1
position: 198127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:172655-198127:1:exon

PIP5K1A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PIP5K1A
product: phosphatidylinositol-4-phosphate 5-kinase type 1 alpha, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 long SRA reads, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_040538664.1
SIO_010081: PIP5K1A
subclass of: SO_0000673
so part of: PIP5K1A
location: join(172655..172773,175161..181954,184835..184965,185366..185483,185709..185861,187022..187321,187883..188088,188744..188827,189786..189834,190194..190278,190592..190729,191117..191246,192220..192300,194918..195002,195568..198127)
location: region:172655-198127:1
so has part: feature:172655-172773:1:exon
so has part: feature:175161-181954:1:exon
so has part: feature:184835-184965:1:exon
so has part: feature:185366-185483:1:exon
so has part: feature:185709-185861:1:exon
so has part: feature:187022-187321:1:exon
so has part: feature:187883-188088:1:exon
so has part: feature:188744-188827:1:exon
so has part: feature:189786-189834:1:exon
so has part: feature:190194-190278:1:exon
so has part: feature:190592-190729:1:exon
so has part: feature:191117-191246:1:exon
so has part: feature:192220-192300:1:exon
so has part: feature:194918-195002:1:exon
so has part: feature:195568-198127:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:172655-172773:1:exon

position:172773:1
position: 172773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:175161-181954:1:exon

position:175161:1
position: 175161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:181954:1
position: 181954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:184835-184965:1:exon

position:184835:1
position: 184835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:184965:1
position: 184965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:185366-185483:1:exon

position:185366:1
position: 185366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:185483:1
position: 185483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:185709-185861:1:exon

position:185709:1
position: 185709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:185861:1
position: 185861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:187022-187321:1:exon

position:187022:1
position: 187022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:187321:1
position: 187321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:187883-188088:1:exon

position:187883:1
position: 187883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:188088:1
position: 188088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:188744-188827:1:exon

position:188744:1
position: 188744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:188827:1
position: 188827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:189786-189834:1:exon

position:189786:1
position: 189786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:189834:1
position: 189834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:190194-190278:1:exon

position:190194:1
position: 190194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:190278:1
position: 190278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:190592-190729:1:exon

position:190592:1
position: 190592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:190729:1
position: 190729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:191117-191246:1:exon

position:191117:1
position: 191117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:191246:1
position: 191246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:192220-192300:1:exon

position:192220:1
position: 192220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:192300:1
position: 192300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:194918-195002:1:exon

position:194918:1
position: 194918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:195002:1
position: 195002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:195568-198127:1:exon

position:195568:1
position: 195568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PIP5K1A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PIP5K1A
product: phosphatidylinositol-4-phosphate 5-kinase type 1 alpha, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 long SRA reads, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_040538661.1
SIO_010081: PIP5K1A
subclass of: SO_0000673
so part of: PIP5K1A
location: join(172661..172773,181075..181109,181865..181954,184835..184965,185366..185483,185709..185861,187022..187321,187883..188088,188744..188827,189786..189834,190194..190278,190592..190729,191138..191246,192220..192300,194918..195002,195568..198127)
location: region:172661-198127:1
so has part: feature:172661-172773:1:exon
so has part: feature:181075-181109:1:exon
so has part: feature:181865-181954:1:exon
so has part: feature:184835-184965:1:exon
so has part: feature:185366-185483:1:exon
so has part: feature:185709-185861:1:exon
so has part: feature:187022-187321:1:exon
so has part: feature:187883-188088:1:exon
so has part: feature:188744-188827:1:exon
so has part: feature:189786-189834:1:exon
so has part: feature:190194-190278:1:exon
so has part: feature:190592-190729:1:exon
so has part: feature:191138-191246:1:exon
so has part: feature:192220-192300:1:exon
so has part: feature:194918-195002:1:exon
so has part: feature:195568-198127:1:exon

position:172661:1
position: 172661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:172661-172773:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:181075-181109:1:exon

position:181075:1
position: 181075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:181109:1
position: 181109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:181865-181954:1:exon

position:181865:1
position: 181865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:184835-184965:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:185366-185483:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:185709-185861:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:187022-187321:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:187883-188088:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:188744-188827:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:189786-189834:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:190194-190278:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:190592-190729:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:191138-191246:1:exon

position:191138:1
position: 191138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:192220-192300:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:194918-195002:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:195568-198127:1:exon

PIP5K1A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PIP5K1A
product: phosphatidylinositol-4-phosphate 5-kinase type 1 alpha, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 long SRA reads, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_040538659.1
SIO_010081: PIP5K1A
subclass of: SO_0000673
so part of: PIP5K1A
location: join(172662..172773,181075..181109,181865..181954,184835..184965,185366..185483,185709..185861,187022..187321,187883..188088,188744..188827,189786..189834,190194..190278,190592..190729,191117..191246,192220..192300,194918..195002,195568..198127)
location: region:172662-198127:1
so has part: feature:172662-172773:1:exon
so has part: feature:181075-181109:1:exon
so has part: feature:181865-181954:1:exon
so has part: feature:184835-184965:1:exon
so has part: feature:185366-185483:1:exon
so has part: feature:185709-185861:1:exon
so has part: feature:187022-187321:1:exon
so has part: feature:187883-188088:1:exon
so has part: feature:188744-188827:1:exon
so has part: feature:189786-189834:1:exon
so has part: feature:190194-190278:1:exon
so has part: feature:190592-190729:1:exon
so has part: feature:191117-191246:1:exon
so has part: feature:192220-192300:1:exon
so has part: feature:194918-195002:1:exon
so has part: feature:195568-198127:1:exon

position:172662:1
position: 172662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:172662-172773:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:181075-181109:1:exon

urn:…
SIO_000300: 3
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urn:…
SIO_000300: 4
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SIO_000300: 5
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urn:…
SIO_000300: 6
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SIO_000300: 7
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SIO_000300: 8
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urn:…
SIO_000300: 9
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SIO_000300: 10
SIO_000628: feature:189786-189834:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:190194-190278:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:190592-190729:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:191117-191246:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:192220-192300:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:194918-195002:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:195568-198127:1:exon

PIP5K1A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PIP5K1A
product: phosphatidylinositol-4-phosphate 5-kinase type 1 alpha, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 long SRA reads, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538666.1
SIO_010081: PIP5K1A
subclass of: SO_0000673
so part of: PIP5K1A
location: join(172662..172773,181075..181109,181865..181954,184835..184965,185366..185483,185709..185861,187022..187321,187883..188088,188744..188827,189786..189834,190194..190278,190592..190729,191117..191246,194895..195002,195568..198127)
location: region:172662-198127:1
so has part: feature:172662-172773:1:exon
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so has part: feature:181865-181954:1:exon
so has part: feature:184835-184965:1:exon
so has part: feature:185366-185483:1:exon
so has part: feature:185709-185861:1:exon
so has part: feature:187022-187321:1:exon
so has part: feature:187883-188088:1:exon
so has part: feature:188744-188827:1:exon
so has part: feature:189786-189834:1:exon
so has part: feature:190194-190278:1:exon
so has part: feature:190592-190729:1:exon
so has part: feature:191117-191246:1:exon
so has part: feature:194895-195002:1:exon
so has part: feature:195568-198127:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:172662-172773:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:181075-181109:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181865-181954:1:exon

urn:…
SIO_000300: 4
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urn:…
SIO_000300: 5
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urn:…
SIO_000300: 6
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urn:…
SIO_000300: 7
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urn:…
SIO_000300: 8
SIO_000628: feature:187883-188088:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:188744-188827:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:189786-189834:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:190194-190278:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:190592-190729:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:191117-191246:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:194895-195002:1:exon

position:194895:1
position: 194895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:195568-198127:1:exon

PIP5K1A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PIP5K1A
product: phosphatidylinositol-4-phosphate 5-kinase type 1 alpha, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 long SRA reads, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_040538667.1
SIO_010081: PIP5K1A
subclass of: SO_0000673
so part of: PIP5K1A
location: join(172662..172773,181075..181109,181865..181954,184835..184965,185366..185483,185709..185861,187022..187321,187883..188088,188744..188827,189786..189834,190194..190278,190592..190729,191138..191246,194895..195002,195568..198127)
location: region:172662-198127:1
so has part: feature:172662-172773:1:exon
so has part: feature:181075-181109:1:exon
so has part: feature:181865-181954:1:exon
so has part: feature:184835-184965:1:exon
so has part: feature:185366-185483:1:exon
so has part: feature:185709-185861:1:exon
so has part: feature:187022-187321:1:exon
so has part: feature:187883-188088:1:exon
so has part: feature:188744-188827:1:exon
so has part: feature:189786-189834:1:exon
so has part: feature:190194-190278:1:exon
so has part: feature:190592-190729:1:exon
so has part: feature:191138-191246:1:exon
so has part: feature:194895-195002:1:exon
so has part: feature:195568-198127:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:172662-172773:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:181075-181109:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181865-181954:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:184835-184965:1:exon

urn:…
SIO_000300: 5
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SIO_000300: 6
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SIO_000300: 7
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SIO_000300: 8
SIO_000628: feature:187883-188088:1:exon

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SIO_000300: 9
SIO_000628: feature:188744-188827:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:189786-189834:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:190194-190278:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:190592-190729:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:191138-191246:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:194895-195002:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:195568-198127:1:exon

PIP5K1A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PIP5K1A
product: phosphatidylinositol-4-phosphate 5-kinase type 1 alpha, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 long SRA reads, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_040538665.1
SIO_010081: PIP5K1A
subclass of: SO_0000673
so part of: PIP5K1A
location: join(172662..172773,181075..181109,181865..181954,184835..184965,185366..185483,185709..185861,187022..187321,187883..188088,188744..188827,189786..189834,190194..190278,190592..190729,191138..191246,194918..195002,195568..198127)
location: region:172662-198127:1
so has part: feature:172662-172773:1:exon
so has part: feature:181075-181109:1:exon
so has part: feature:181865-181954:1:exon
so has part: feature:184835-184965:1:exon
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so has part: feature:185709-185861:1:exon
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so has part: feature:187883-188088:1:exon
so has part: feature:188744-188827:1:exon
so has part: feature:189786-189834:1:exon
so has part: feature:190194-190278:1:exon
so has part: feature:190592-190729:1:exon
so has part: feature:191138-191246:1:exon
so has part: feature:194918-195002:1:exon
so has part: feature:195568-198127:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:172662-172773:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:181075-181109:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181865-181954:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:184835-184965:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:185366-185483:1:exon

urn:…
SIO_000300: 6
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urn:…
SIO_000300: 7
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SIO_000300: 8
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SIO_000300: 9
SIO_000628: feature:188744-188827:1:exon

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SIO_000300: 10
SIO_000628: feature:189786-189834:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:190194-190278:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:190592-190729:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:191138-191246:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:194918-195002:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:195568-198127:1:exon

PIP5K1A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PIP5K1A
product: phosphatidylinositol-4-phosphate 5-kinase type 1 alpha, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_040538660.1
SIO_010081: PIP5K1A
subclass of: SO_0000673
so part of: PIP5K1A
location: join(172662..172773,181075..181109,181865..181954,184835..184965,185366..185483,185709..185861,187022..187321,187883..188088,188744..188827,189786..189834,190194..190278,190592..190729,191117..191246,192220..192300,193839..194721)
location: region:172662-194721:1
so has part: feature:172662-172773:1:exon
so has part: feature:181075-181109:1:exon
so has part: feature:181865-181954:1:exon
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so has part: feature:185366-185483:1:exon
so has part: feature:185709-185861:1:exon
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so has part: feature:187883-188088:1:exon
so has part: feature:188744-188827:1:exon
so has part: feature:189786-189834:1:exon
so has part: feature:190194-190278:1:exon
so has part: feature:190592-190729:1:exon
so has part: feature:191117-191246:1:exon
so has part: feature:192220-192300:1:exon
so has part: feature:193839-194721:1:exon

position:194721:1
position: 194721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:172662-172773:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:181075-181109:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181865-181954:1:exon

urn:…
SIO_000300: 4
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SIO_000300: 5
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urn:…
SIO_000300: 6
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SIO_000300: 7
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SIO_000300: 8
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SIO_000300: 9
SIO_000628: feature:188744-188827:1:exon

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SIO_000300: 10
SIO_000628: feature:189786-189834:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:190194-190278:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:190592-190729:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:191117-191246:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:192220-192300:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:193839-194721:1:exon

position:193839:1
position: 193839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PIP5K1A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PIP5K1A
product: phosphatidylinositol-4-phosphate 5-kinase type 1 alpha, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 139 long SRA reads, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538663.1
SIO_010081: PIP5K1A
subclass of: SO_0000673
so part of: PIP5K1A
location: join(172663..172773,181075..181109,181865..181954,184835..184965,185366..185483,185709..185861,187022..187321,187883..188088,188744..188827,189786..189834,190194..190278,190592..190729,191117..191246,194918..195002,195568..198127)
location: region:172663-198127:1
so has part: feature:172663-172773:1:exon
so has part: feature:181075-181109:1:exon
so has part: feature:181865-181954:1:exon
so has part: feature:184835-184965:1:exon
so has part: feature:185366-185483:1:exon
so has part: feature:185709-185861:1:exon
so has part: feature:187022-187321:1:exon
so has part: feature:187883-188088:1:exon
so has part: feature:188744-188827:1:exon
so has part: feature:189786-189834:1:exon
so has part: feature:190194-190278:1:exon
so has part: feature:190592-190729:1:exon
so has part: feature:191117-191246:1:exon
so has part: feature:194918-195002:1:exon
so has part: feature:195568-198127:1:exon

position:172663:1
position: 172663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:172663-172773:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:181075-181109:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181865-181954:1:exon

urn:…
SIO_000300: 4
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SIO_000300: 5
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SIO_000300: 6
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SIO_000300: 7
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urn:…
SIO_000300: 8
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SIO_000300: 9
SIO_000628: feature:188744-188827:1:exon

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SIO_000300: 10
SIO_000628: feature:189786-189834:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:190194-190278:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:190592-190729:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:191117-191246:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:194918-195002:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:195568-198127:1:exon

PIP5K1A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PIP5K1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatidylinositol 4-phosphate 5-kinase type-1 alpha isoform X1
translation: MAAAGPEPGDSGGGGLGGSSTFKKSLTPEMPGSSGQPGSQTIKKGHRGVDSTGETTYKKTTSSALKGAIQLGITHTVGSLSTKPERDVLMQDFYVVESIFFPSEGSNLTPAHHYNDFRFKTYAPVAFRYFRELFGIRPDDYLYSLCSEPLIELSNSGASGSLFYVSSDDEFIIKTVQHKEAEFLQKLLPGYYMNLNQNPRTLLPKFYGLYCVQAGGKNIRIVVMNNLLPRSVKMHLKYDLKGSTYKRRASQKEREKVFPTYKDLDFMQDIPDGLFLDSDMYNALCKTLQRDCLVLQSFKIMDYSLLVAIHNIDLAQREHALADGTSQTDTRRPAAQKALYSTAMESIQGEARRGGTIETDDQMGGIPARNAKGERLLLYIGIIDVLQSYRFVKKLEHSWKALVHDGDTVSVHRPSFYAERFQRFMCNTAFKKIPLKPSPSKKSRSGTAVPRRSCQGGVPFQSHMSCETKAQVTTEVDVEQGSHLGRPDLLPRTLPVDEANSDSVATTLSTSSLGSGGLNSPANRSVGVQVHKADSSAKDLTRAATGIFLPSGSPGPSIPEHSSELREQFEDLQETEISF
SIO_010081: PIP5K1A
subclass of: SO_0000673
so part of: PIP5K1A
location: join(172722..172773,181075..181109,181865..181954,184835..184965,185366..185483,185709..185861,187022..187321,187883..188088,188744..188827,189786..189834,190194..190278,190592..190729,191117..191246,192220..192300,194918..195002,195568..195570)
location: region:172722-195570:1
so has part: feature:172722-172773:1:exon
so has part: feature:181075-181109:1:exon
so has part: feature:181865-181954:1:exon
so has part: feature:184835-184965:1:exon
so has part: feature:185366-185483:1:exon
so has part: feature:185709-185861:1:exon
so has part: feature:187022-187321:1:exon
so has part: feature:187883-188088:1:exon
so has part: feature:188744-188827:1:exon
so has part: feature:189786-189834:1:exon
so has part: feature:190194-190278:1:exon
so has part: feature:190592-190729:1:exon
so has part: feature:191117-191246:1:exon
so has part: feature:192220-192300:1:exon
so has part: feature:194918-195002:1:exon
so has part: feature:195568-195570:1:exon

XP_040394593.1
type: Protein
SIO_000068: ncbiprotein

position:172722:1
position: 172722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:195570:1
position: 195570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:172722-172773:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:181075-181109:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181865-181954:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:184835-184965:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:185366-185483:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:185709-185861:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:187022-187321:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:187883-188088:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:188744-188827:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:189786-189834:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:190194-190278:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:190592-190729:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:191117-191246:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:192220-192300:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:194918-195002:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:195568-195570:1:exon

PIP5K1A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PIP5K1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatidylinositol 4-phosphate 5-kinase type-1 alpha isoform X4
translation: MAAAGPEPGDSGGGGLGGSSTFKKSLTPEMPGSSGQPGSQTIKKGHRGVDSTGETTYKKTTSSALKGAIQLGITHTVGSLSTKPERDVLMQDFYVVESIFFPSEGSNLTPAHHYNDFRFKTYAPVAFRYFRELFGIRPDDYLYSLCSEPLIELSNSGASGSLFYVSSDDEFIIKTVQHKEAEFLQKLLPGYYMNLNQNPRTLLPKFYGLYCVQAGGKNIRIVVMNNLLPRSVKMHLKYDLKGSTYKRRASQKEREKVFPTYKDLDFMQDIPDGLFLDSDMYNALCKTLQRDCLVLQSFKIMDYSLLVAIHNIDLAQREHALADGTSQTDTRRPAAQKALYSTAMESIQGEARRGGTIETDDQMGGIPARNAKGERLLLYIGIIDVLQSYRFVKKLEHSWKALVHDGDTVSVHRPSFYAERFQRFMCNTAFKKIPLKPSPSKKSRSGTAVPRRSCQGGVPFQSHMSCETKAQVTTEVDVEQGSHLGRPDLLPRTLPVDEANSDSVATTLSTSSLGSGGLNSPANSGSPGPSIPEHSSELREQFEDLQETEISF
SIO_010081: PIP5K1A
subclass of: SO_0000673
so part of: PIP5K1A
location: join(172722..172773,181075..181109,181865..181954,184835..184965,185366..185483,185709..185861,187022..187321,187883..188088,188744..188827,189786..189834,190194..190278,190592..190729,191117..191246,194918..195002,195568..195570)
location: region:172722-195570:1
so has part: feature:172722-172773:1:exon
so has part: feature:181075-181109:1:exon
so has part: feature:181865-181954:1:exon
so has part: feature:184835-184965:1:exon
so has part: feature:185366-185483:1:exon
so has part: feature:185709-185861:1:exon
so has part: feature:187022-187321:1:exon
so has part: feature:187883-188088:1:exon
so has part: feature:188744-188827:1:exon
so has part: feature:189786-189834:1:exon
so has part: feature:190194-190278:1:exon
so has part: feature:190592-190729:1:exon
so has part: feature:191117-191246:1:exon
so has part: feature:194918-195002:1:exon
so has part: feature:195568-195570:1:exon

XP_040394597.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:172722-172773:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:181075-181109:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181865-181954:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:184835-184965:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:185366-185483:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:185709-185861:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:187022-187321:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:187883-188088:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:188744-188827:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:189786-189834:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:190194-190278:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:190592-190729:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:191117-191246:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:194918-195002:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:195568-195570:1:exon

PIP5K1A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PIP5K1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatidylinositol 4-phosphate 5-kinase type-1 alpha isoform X3
translation: MAAAGPEPGDSGGGGLGGSSTFKKSLTPEMPGSSGQPGSQTIKKGHRGVDSTGETTYKKTTSSALKGAIQLGITHTVGSLSTKPERDVLMQDFYVVESIFFPSEGSNLTPAHHYNDFRFKTYAPVAFRYFRELFGIRPDDYLYSLCSEPLIELSNSGASGSLFYVSSDDEFIIKTVQHKEAEFLQKLLPGYYMNLNQNPRTLLPKFYGLYCVQAGGKNIRIVVMNNLLPRSVKMHLKYDLKGSTYKRRASQKEREKVFPTYKDLDFMQDIPDGLFLDSDMYNALCKTLQRDCLVLQSFKIMDYSLLVAIHNIDLAQREHALADGTSQTDTRRPAAQKALYSTAMESIQGEARRGGTIETDDQMGGIPARNAKGERLLLYIGIIDVLQSYRFVKKLEHSWKALVHDGDTVSVHRPSFYAERFQRFMCNTAFKKIPLKPSPSKKSRSGTAVPRRSCQGGVPFQSHMSCETKAQVTTEVDVEQDLLPRTLPVDEANSDSVATTLSTSSLGSGGLNSPANRSVGVQVHKADSSAKDLTRAATGIFLPSGSPGPSIPEHSSELREQFEDLQETEISF
SIO_010081: PIP5K1A
subclass of: SO_0000673
so part of: PIP5K1A
location: join(172722..172773,181075..181109,181865..181954,184835..184965,185366..185483,185709..185861,187022..187321,187883..188088,188744..188827,189786..189834,190194..190278,190592..190729,191138..191246,192220..192300,194918..195002,195568..195570)
location: region:172722-195570:1
so has part: feature:172722-172773:1:exon
so has part: feature:181075-181109:1:exon
so has part: feature:181865-181954:1:exon
so has part: feature:184835-184965:1:exon
so has part: feature:185366-185483:1:exon
so has part: feature:185709-185861:1:exon
so has part: feature:187022-187321:1:exon
so has part: feature:187883-188088:1:exon
so has part: feature:188744-188827:1:exon
so has part: feature:189786-189834:1:exon
so has part: feature:190194-190278:1:exon
so has part: feature:190592-190729:1:exon
so has part: feature:191138-191246:1:exon
so has part: feature:192220-192300:1:exon
so has part: feature:194918-195002:1:exon
so has part: feature:195568-195570:1:exon

XP_040394595.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:172722-172773:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:181075-181109:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181865-181954:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:184835-184965:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:185366-185483:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:185709-185861:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:187022-187321:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:187883-188088:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:188744-188827:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:189786-189834:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:190194-190278:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:190592-190729:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:191138-191246:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:192220-192300:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:194918-195002:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:195568-195570:1:exon

PIP5K1A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PIP5K1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatidylinositol 4-phosphate 5-kinase type-1 alpha isoform X6
translation: MAAAGPEPGDSGGGGLGGSSTFKKSLTPEMPGSSGQPGSQTIKKGHRGVDSTGETTYKKTTSSALKGAIQLGITHTVGSLSTKPERDVLMQDFYVVESIFFPSEGSNLTPAHHYNDFRFKTYAPVAFRYFRELFGIRPDDYLYSLCSEPLIELSNSGASGSLFYVSSDDEFIIKTVQHKEAEFLQKLLPGYYMNLNQNPRTLLPKFYGLYCVQAGGKNIRIVVMNNLLPRSVKMHLKYDLKGSTYKRRASQKEREKVFPTYKDLDFMQDIPDGLFLDSDMYNALCKTLQRDCLVLQSFKIMDYSLLVAIHNIDLAQREHALADGTSQTDTRRPAAQKALYSTAMESIQGEARRGGTIETDDQMGGIPARNAKGERLLLYIGIIDVLQSYRFVKKLEHSWKALVHDGDTVSVHRPSFYAERFQRFMCNTAFKKIPLKPSPSKKSRSGTAVPRRSCQGGVPFQSHMSCETKAQVTTEVDVEQDLLPRTLPVDEANSDSVATTLSTSSLGSGGLNSPANSGSPGPSIPEHSSELREQFEDLQETEISF
SIO_010081: PIP5K1A
subclass of: SO_0000673
so part of: PIP5K1A
location: join(172722..172773,181075..181109,181865..181954,184835..184965,185366..185483,185709..185861,187022..187321,187883..188088,188744..188827,189786..189834,190194..190278,190592..190729,191138..191246,194918..195002,195568..195570)
location: region:172722-195570:1
so has part: feature:172722-172773:1:exon
so has part: feature:181075-181109:1:exon
so has part: feature:181865-181954:1:exon
so has part: feature:184835-184965:1:exon
so has part: feature:185366-185483:1:exon
so has part: feature:185709-185861:1:exon
so has part: feature:187022-187321:1:exon
so has part: feature:187883-188088:1:exon
so has part: feature:188744-188827:1:exon
so has part: feature:189786-189834:1:exon
so has part: feature:190194-190278:1:exon
so has part: feature:190592-190729:1:exon
so has part: feature:191138-191246:1:exon
so has part: feature:194918-195002:1:exon
so has part: feature:195568-195570:1:exon

XP_040394599.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:172722-172773:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:181075-181109:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181865-181954:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:184835-184965:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:185366-185483:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:185709-185861:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:187022-187321:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:187883-188088:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:188744-188827:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:189786-189834:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:190194-190278:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:190592-190729:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:191138-191246:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:194918-195002:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:195568-195570:1:exon

PIP5K1A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PIP5K1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatidylinositol 4-phosphate 5-kinase type-1 alpha isoform X7
translation: MAAAGPEPGDSGGGGLGGSSTFKKSLTPEMPGSSGQPGSQTIKKGHRGVDSTGETTYKKTTSSALKGAIQLGITHTVGSLSTKPERDVLMQDFYVVESIFFPSEGSNLTPAHHYNDFRFKTYAPVAFRYFRELFGIRPDDYLYSLCSEPLIELSNSGASGSLFYVSSDDEFIIKTVQHKEAEFLQKLLPGYYMNLNQNPRTLLPKFYGLYCVQAGGKNIRIVVMNNLLPRSVKMHLKYDLKGSTYKRRASQKEREKVFPTYKDLDFMQDIPDGLFLDSDMYNALCKTLQRDCLVLQSFKIMDYSLLVAIHNIDLAQREHALADGTSQTDTRRPAAQKALYSTAMESIQGEARRGGTIETDDQMGGIPARNAKGERLLLYIGIIDVLQSYRFVKKLEHSWKALVHDGDTVSVHRPSFYAERFQRFMCNTAFKKIPLKPSPSKKSRSGTAVPRRSCQGGVPFQSHMSCETKAQVTTEVDVEQGSHLGRPDLLPRTLPVDEANSDSVATTLSTSSLGSGGLNSPANRSPPSVFPVAPQGLQYPSTPQN
SIO_010081: PIP5K1A
subclass of: SO_0000673
so part of: PIP5K1A
location: join(172722..172773,181075..181109,181865..181954,184835..184965,185366..185483,185709..185861,187022..187321,187883..188088,188744..188827,189786..189834,190194..190278,190592..190729,191117..191246,194895..194961)
location: region:172722-194961:1
so has part: feature:172722-172773:1:exon
so has part: feature:181075-181109:1:exon
so has part: feature:181865-181954:1:exon
so has part: feature:184835-184965:1:exon
so has part: feature:185366-185483:1:exon
so has part: feature:185709-185861:1:exon
so has part: feature:187022-187321:1:exon
so has part: feature:187883-188088:1:exon
so has part: feature:188744-188827:1:exon
so has part: feature:189786-189834:1:exon
so has part: feature:190194-190278:1:exon
so has part: feature:190592-190729:1:exon
so has part: feature:191117-191246:1:exon
so has part: feature:194895-194961:1:exon

XP_040394600.1
type: Protein
SIO_000068: ncbiprotein

position:194961:1
position: 194961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:172722-172773:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:181075-181109:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181865-181954:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:184835-184965:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:185366-185483:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:185709-185861:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:187022-187321:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:187883-188088:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:188744-188827:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:189786-189834:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:190194-190278:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:190592-190729:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:191117-191246:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:194895-194961:1:exon

PIP5K1A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PIP5K1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatidylinositol 4-phosphate 5-kinase type-1 alpha isoform X8
translation: MAAAGPEPGDSGGGGLGGSSTFKKSLTPEMPGSSGQPGSQTIKKGHRGVDSTGETTYKKTTSSALKGAIQLGITHTVGSLSTKPERDVLMQDFYVVESIFFPSEGSNLTPAHHYNDFRFKTYAPVAFRYFRELFGIRPDDYLYSLCSEPLIELSNSGASGSLFYVSSDDEFIIKTVQHKEAEFLQKLLPGYYMNLNQNPRTLLPKFYGLYCVQAGGKNIRIVVMNNLLPRSVKMHLKYDLKGSTYKRRASQKEREKVFPTYKDLDFMQDIPDGLFLDSDMYNALCKTLQRDCLVLQSFKIMDYSLLVAIHNIDLAQREHALADGTSQTDTRRPAAQKALYSTAMESIQGEARRGGTIETDDQMGGIPARNAKGERLLLYIGIIDVLQSYRFVKKLEHSWKALVHDGDTVSVHRPSFYAERFQRFMCNTAFKKIPLKPSPSKKSRSGTAVPRRSCQGGVPFQSHMSCETKAQVTTEVDVEQDLLPRTLPVDEANSDSVATTLSTSSLGSGGLNSPANRSPPSVFPVAPQGLQYPSTPQN
SIO_010081: PIP5K1A
subclass of: SO_0000673
so part of: PIP5K1A
location: join(172722..172773,181075..181109,181865..181954,184835..184965,185366..185483,185709..185861,187022..187321,187883..188088,188744..188827,189786..189834,190194..190278,190592..190729,191138..191246,194895..194961)
location: region:172722-194961:1
so has part: feature:172722-172773:1:exon
so has part: feature:181075-181109:1:exon
so has part: feature:181865-181954:1:exon
so has part: feature:184835-184965:1:exon
so has part: feature:185366-185483:1:exon
so has part: feature:185709-185861:1:exon
so has part: feature:187022-187321:1:exon
so has part: feature:187883-188088:1:exon
so has part: feature:188744-188827:1:exon
so has part: feature:189786-189834:1:exon
so has part: feature:190194-190278:1:exon
so has part: feature:190592-190729:1:exon
so has part: feature:191138-191246:1:exon
so has part: feature:194895-194961:1:exon

XP_040394601.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:172722-172773:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:181075-181109:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181865-181954:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:184835-184965:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:185366-185483:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:185709-185861:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:187022-187321:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:187883-188088:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:188744-188827:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:189786-189834:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:190194-190278:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:190592-190729:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:191138-191246:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:194895-194961:1:exon

PIP5K1A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PIP5K1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatidylinositol 4-phosphate 5-kinase type-1 alpha isoform X2
translation: MAAAGPEPGDSGGGGLGGSSTFKKSLTPEMPGSSGQPGSQTIKKGHRGVDSTGETTYKKTTSSALKGAIQLGITHTVGSLSTKPERDVLMQDFYVVESIFFPSEGSNLTPAHHYNDFRFKTYAPVAFRYFRELFGIRPDDYLYSLCSEPLIELSNSGASGSLFYVSSDDEFIIKTVQHKEAEFLQKLLPGYYMNLNQNPRTLLPKFYGLYCVQAGGKNIRIVVMNNLLPRSVKMHLKYDLKGSTYKRRASQKEREKVFPTYKDLDFMQDIPDGLFLDSDMYNALCKTLQRDCLVLQSFKIMDYSLLVAIHNIDLAQREHALADGTSQTDTRRPAAQKALYSTAMESIQGEARRGGTIETDDQMGGIPARNAKGERLLLYIGIIDVLQSYRFVKKLEHSWKALVHDGDTVSVHRPSFYAERFQRFMCNTAFKKIPLKPSPSKKSRSGTAVPRRSCQGGVPFQSHMSCETKAQVTTEVDVEQGSHLGRPDLLPRTLPVDEANSDSVATTLSTSSLGSGGLNSPANRSVGVQVHKADSSAKDLTRAATGIFLPRSETESRQVEHSRGIEVRAAQSNQANR
SIO_010081: PIP5K1A
subclass of: SO_0000673
so part of: PIP5K1A
location: join(172722..172773,181075..181109,181865..181954,184835..184965,185366..185483,185709..185861,187022..187321,187883..188088,188744..188827,189786..189834,190194..190278,190592..190729,191117..191246,192220..192300,193839..193920)
location: region:172722-193920:1
so has part: feature:172722-172773:1:exon
so has part: feature:181075-181109:1:exon
so has part: feature:181865-181954:1:exon
so has part: feature:184835-184965:1:exon
so has part: feature:185366-185483:1:exon
so has part: feature:185709-185861:1:exon
so has part: feature:187022-187321:1:exon
so has part: feature:187883-188088:1:exon
so has part: feature:188744-188827:1:exon
so has part: feature:189786-189834:1:exon
so has part: feature:190194-190278:1:exon
so has part: feature:190592-190729:1:exon
so has part: feature:191117-191246:1:exon
so has part: feature:192220-192300:1:exon
so has part: feature:193839-193920:1:exon

XP_040394594.1
type: Protein
SIO_000068: ncbiprotein

position:193920:1
position: 193920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:172722-172773:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:181075-181109:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181865-181954:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:184835-184965:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:185366-185483:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:185709-185861:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:187022-187321:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:187883-188088:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:188744-188827:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:189786-189834:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:190194-190278:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:190592-190729:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:191117-191246:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:192220-192300:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:193839-193920:1:exon

PIP5K1A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PIP5K1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatidylinositol 4-phosphate 5-kinase type-1 alpha isoform X5
translation: MPGSSGQPGSQTIKKGHRGVDSTGETTYKKTTSSALKGAIQLGITHTVGSLSTKPERDVLMQDFYVVESIFFPSEGSNLTPAHHYNDFRFKTYAPVAFRYFRELFGIRPDDYLYSLCSEPLIELSNSGASGSLFYVSSDDEFIIKTVQHKEAEFLQKLLPGYYMNLNQNPRTLLPKFYGLYCVQAGGKNIRIVVMNNLLPRSVKMHLKYDLKGSTYKRRASQKEREKVFPTYKDLDFMQDIPDGLFLDSDMYNALCKTLQRDCLVLQSFKIMDYSLLVAIHNIDLAQREHALADGTSQTDTRRPAAQKALYSTAMESIQGEARRGGTIETDDQMGGIPARNAKGERLLLYIGIIDVLQSYRFVKKLEHSWKALVHDGDTVSVHRPSFYAERFQRFMCNTAFKKIPLKPSPSKKSRSGTAVPRRSCQGGVPFQSHMSCETKAQVTTEVDVEQGSHLGRPDLLPRTLPVDEANSDSVATTLSTSSLGSGGLNSPANRSVGVQVHKADSSAKDLTRAATGIFLPSGSPGPSIPEHSSELREQFEDLQETEISF
SIO_010081: PIP5K1A
subclass of: SO_0000673
so part of: PIP5K1A
location: join(181865..181954,184835..184965,185366..185483,185709..185861,187022..187321,187883..188088,188744..188827,189786..189834,190194..190278,190592..190729,191117..191246,192220..192300,194918..195002,195568..195570)
location: region:181865-195570:1
so has part: feature:181865-181954:1:exon
so has part: feature:184835-184965:1:exon
so has part: feature:185366-185483:1:exon
so has part: feature:185709-185861:1:exon
so has part: feature:187022-187321:1:exon
so has part: feature:187883-188088:1:exon
so has part: feature:188744-188827:1:exon
so has part: feature:189786-189834:1:exon
so has part: feature:190194-190278:1:exon
so has part: feature:190592-190729:1:exon
so has part: feature:191117-191246:1:exon
so has part: feature:192220-192300:1:exon
so has part: feature:194918-195002:1:exon
so has part: feature:195568-195570:1:exon

XP_040394598.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:181865-181954:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:184835-184965:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:185366-185483:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:185709-185861:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:187022-187321:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:187883-188088:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:188744-188827:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:189786-189834:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:190194-190278:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:190592-190729:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:191117-191246:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:192220-192300:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:194918-195002:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:195568-195570:1:exon

PSMD4
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: PSMD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 199469..205271
location: region:199469-205271:1
so has part: feature:199469-205271:1:exon
subclass of: SO_0000010

121060679
type: Gene
SIO_000068: ncbigene

position:199469:1
position: 199469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:205271:1
position: 205271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:199469-205271:1:exon

PSMD4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PSMD4
product: proteasome 26S subunit ubiquitin receptor, non-ATPase 4, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 133 long SRA reads, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538668.1
SIO_010081: PSMD4
subclass of: SO_0000673
so part of: PSMD4
location: join(199469..199625,200923..201063,201717..201831,202871..202957,203258..203326,203800..204015,204130..204238,204621..204752,204879..204946,205048..205271)
location: region:199469-205271:1
so has part: feature:199469-199625:1:exon
so has part: feature:200923-201063:1:exon
so has part: feature:201717-201831:1:exon
so has part: feature:202871-202957:1:exon
so has part: feature:203258-203326:1:exon
so has part: feature:203800-204015:1:exon
so has part: feature:204130-204238:1:exon
so has part: feature:204621-204752:1:exon
so has part: feature:204879-204946:1:exon
so has part: feature:205048-205271:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:199469-199625:1:exon

position:199625:1
position: 199625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:200923-201063:1:exon

position:200923:1
position: 200923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:201063:1
position: 201063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:201717-201831:1:exon

position:201717:1
position: 201717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:201831:1
position: 201831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:202871-202957:1:exon

position:202871:1
position: 202871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:202957:1
position: 202957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:203258-203326:1:exon

position:203258:1
position: 203258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:203326:1
position: 203326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:203800-204015:1:exon

position:203800:1
position: 203800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:204015:1
position: 204015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:204130-204238:1:exon

position:204130:1
position: 204130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:204238:1
position: 204238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:204621-204752:1:exon

position:204621:1
position: 204621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:204752:1
position: 204752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:204879-204946:1:exon

position:204879:1
position: 204879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:204946:1
position: 204946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:205048-205271:1:exon

position:205048:1
position: 205048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PSMD4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PSMD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 26S proteasome non-ATPase regulatory subunit 4 isoform X1
translation: MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANNCEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEEEANTDKLTAFINTLNGKDGTGSHLVTVPPGPSLADALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIAATGGDDSDDALLKMTITQQEFGRAGLPDLSSMTEEEQIAYAMQMSLQGAEFAQAEEAEADGGAAMDTSEPAKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQAAKDGKEKKEEDRK
SIO_010081: PSMD4
subclass of: SO_0000673
so part of: PSMD4
location: join(199600..199625,200923..201063,201717..201831,202871..202957,203258..203326,203800..204015,204130..204238,204621..204752,204879..204946,205048..205215)
location: region:199600-205215:1
so has part: feature:199600-199625:1:exon
so has part: feature:200923-201063:1:exon
so has part: feature:201717-201831:1:exon
so has part: feature:202871-202957:1:exon
so has part: feature:203258-203326:1:exon
so has part: feature:203800-204015:1:exon
so has part: feature:204130-204238:1:exon
so has part: feature:204621-204752:1:exon
so has part: feature:204879-204946:1:exon
so has part: feature:205048-205215:1:exon

XP_040394602.1
type: Protein
SIO_000068: ncbiprotein

position:199600:1
position: 199600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:205215:1
position: 205215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:199600-199625:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:200923-201063:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:201717-201831:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:202871-202957:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:203258-203326:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:203800-204015:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:204130-204238:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:204621-204752:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:204879-204946:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:205048-205215:1:exon

PSMD4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PSMD4
product: proteasome 26S subunit ubiquitin receptor, non-ATPase 4, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_040538669.1
SIO_010081: PSMD4
subclass of: SO_0000673
so part of: PSMD4
location: join(200092..200538,200923..201063,201717..201831,202871..202957,203258..203326,203800..204015,204130..204238,204621..204752,204879..204946,205048..205271)
location: region:200092-205271:1
so has part: feature:200092-200538:1:exon
so has part: feature:200923-201063:1:exon
so has part: feature:201717-201831:1:exon
so has part: feature:202871-202957:1:exon
so has part: feature:203258-203326:1:exon
so has part: feature:203800-204015:1:exon
so has part: feature:204130-204238:1:exon
so has part: feature:204621-204752:1:exon
so has part: feature:204879-204946:1:exon
so has part: feature:205048-205271:1:exon

position:200092:1
position: 200092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:200092-200538:1:exon

position:200538:1
position: 200538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:200923-201063:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:201717-201831:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:202871-202957:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:203258-203326:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:203800-204015:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:204130-204238:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:204621-204752:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:204879-204946:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:205048-205271:1:exon

PSMD4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PSMD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 26S proteasome non-ATPase regulatory subunit 4 isoform X2
translation: MRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANNCEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGEEEANTDKLTAFINTLNGKDGTGSHLVTVPPGPSLADALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIAATGGDDSDDALLKMTITQQEFGRAGLPDLSSMTEEEQIAYAMQMSLQGAEFAQAEEAEADGGAAMDTSEPAKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQAAKDGKEKKEEDRK
SIO_010081: PSMD4
subclass of: SO_0000673
so part of: PSMD4
location: join(200942..201063,201717..201831,202871..202957,203258..203326,203800..204015,204130..204238,204621..204752,204879..204946,205048..205215)
location: region:200942-205215:1
so has part: feature:200942-201063:1:exon
so has part: feature:201717-201831:1:exon
so has part: feature:202871-202957:1:exon
so has part: feature:203258-203326:1:exon
so has part: feature:203800-204015:1:exon
so has part: feature:204130-204238:1:exon
so has part: feature:204621-204752:1:exon
so has part: feature:204879-204946:1:exon
so has part: feature:205048-205215:1:exon

XP_040394603.1
type: Protein
SIO_000068: ncbiprotein

position:200942:1
position: 200942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:200942-201063:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:201717-201831:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:202871-202957:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:203258-203326:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:203800-204015:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:204130-204238:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:204621-204752:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:204879-204946:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:205048-205215:1:exon

ZNF687
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: ZNF687
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 205959..231257
location: region:205959-231257:1
so has part: feature:205959-231257:1:exon
subclass of: SO_0000010

121061011
type: Gene
SIO_000068: ncbigene

position:205959:1
position: 205959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:231257:1
position: 231257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:205959-231257:1:exon

ZNF687
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: ZNF687
product: zinc finger protein 687, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 52 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_040539268.1
SIO_010081: ZNF687
subclass of: SO_0000673
so part of: ZNF687
location: join(205959..206060,220524..222790,225131..225309,225877..226053,226310..226472,226938..227234,227591..227703,228079..228220,228791..231257)
location: region:205959-231257:1
so has part: feature:205959-206060:1:exon
so has part: feature:220524-222790:1:exon
so has part: feature:225131-225309:1:exon
so has part: feature:225877-226053:1:exon
so has part: feature:226310-226472:1:exon
so has part: feature:226938-227234:1:exon
so has part: feature:227591-227703:1:exon
so has part: feature:228079-228220:1:exon
so has part: feature:228791-231257:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:205959-206060:1:exon

position:206060:1
position: 206060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:220524-222790:1:exon

position:220524:1
position: 220524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:222790:1
position: 222790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:225131-225309:1:exon

position:225131:1
position: 225131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:225309:1
position: 225309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:225877-226053:1:exon

position:225877:1
position: 225877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:226053:1
position: 226053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:226310-226472:1:exon

position:226310:1
position: 226310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:226472:1
position: 226472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:226938-227234:1:exon

position:226938:1
position: 226938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:227234:1
position: 227234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:227591-227703:1:exon

position:227591:1
position: 227591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:227703:1
position: 227703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:228079-228220:1:exon

position:228079:1
position: 228079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:228220:1
position: 228220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:228791-231257:1:exon

position:228791:1
position: 228791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ZNF687
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: ZNF687
product: zinc finger protein 687, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_040539271.1
SIO_010081: ZNF687
subclass of: SO_0000673
so part of: ZNF687
location: join(206767..206786,220524..222790,225131..225309,225877..226053,226310..226472,226938..227234,227591..227703,228079..228220,228791..231257)
location: region:206767-231257:1
so has part: feature:206767-206786:1:exon
so has part: feature:220524-222790:1:exon
so has part: feature:225131-225309:1:exon
so has part: feature:225877-226053:1:exon
so has part: feature:226310-226472:1:exon
so has part: feature:226938-227234:1:exon
so has part: feature:227591-227703:1:exon
so has part: feature:228079-228220:1:exon
so has part: feature:228791-231257:1:exon

position:206767:1
position: 206767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:206767-206786:1:exon

position:206786:1
position: 206786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:220524-222790:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:225131-225309:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:225877-226053:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:226310-226472:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:226938-227234:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:227591-227703:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:228079-228220:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228791-231257:1:exon

ZNF687
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: ZNF687
product: zinc finger protein 687, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_040539270.1
SIO_010081: ZNF687
subclass of: SO_0000673
so part of: ZNF687
location: join(207029..207124,220524..222790,225131..225309,225877..226053,226310..226472,226938..227234,227591..227703,228079..228220,228791..231257)
location: region:207029-231257:1
so has part: feature:207029-207124:1:exon
so has part: feature:220524-222790:1:exon
so has part: feature:225131-225309:1:exon
so has part: feature:225877-226053:1:exon
so has part: feature:226310-226472:1:exon
so has part: feature:226938-227234:1:exon
so has part: feature:227591-227703:1:exon
so has part: feature:228079-228220:1:exon
so has part: feature:228791-231257:1:exon

position:207029:1
position: 207029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:207029-207124:1:exon

position:207124:1
position: 207124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:220524-222790:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:225131-225309:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:225877-226053:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:226310-226472:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:226938-227234:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:227591-227703:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:228079-228220:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228791-231257:1:exon

ZNF687
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: ZNF687
product: zinc finger protein 687, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_040539267.1
SIO_010081: ZNF687
subclass of: SO_0000673
so part of: ZNF687
location: join(213986..215289,220524..222790,225131..225309,225877..226053,226310..226472,226938..227234,227591..227703,228079..228220,228791..231257)
location: region:213986-231257:1
so has part: feature:213986-215289:1:exon
so has part: feature:220524-222790:1:exon
so has part: feature:225131-225309:1:exon
so has part: feature:225877-226053:1:exon
so has part: feature:226310-226472:1:exon
so has part: feature:226938-227234:1:exon
so has part: feature:227591-227703:1:exon
so has part: feature:228079-228220:1:exon
so has part: feature:228791-231257:1:exon

position:213986:1
position: 213986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:213986-215289:1:exon

position:215289:1
position: 215289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:220524-222790:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:225131-225309:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:225877-226053:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:226310-226472:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:226938-227234:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:227591-227703:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:228079-228220:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:228791-231257:1:exon

ZNF687
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: ZNF687
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 687
translation: MGDMKTPDFDDLLAAFDIPDIDTNEAIHSSHEEADAHIKQVPGEPGPPDHVLPHTDITAVSVIVKNTVCPEQLDALDGRSKDGHVIGPRLLQNGFGATEMPRSPTSRSVEAVASSNGECWVKEKGPKPLDIFSHFSPDPNEDNAANLIDRPRECKPKEKSLAVPSLSPSPTPSLDCKEPMGESTENLPPAFPQPFETSQAGGASGSPPAVPCIKKEESDSEEVGREASPKGLAAALGDSPLEHLKSVTVRYSTGDSPIASWPGSDPNLDSSTSNLPEVKRSPTSPREPFFKPSSPMVQSPRLPPSPKQLDDIALKEEQEALEKSMGSPQSMSSAEEEEEEDDNNNDSPSSNSSRPLKVRIKTIKTSCGSITRTVTRVSSDSEPGSTKGTAEQSSQEPSLEGISFSGSAEKEDGIVLEVPKEKMDLSSPLKTIEGPKIVSVQLGNGTKIKGTVLPVSTIQNASSAMLIAASVAQQKSVVLPSKTGKAVAKNIINLVPQTLPKADTRTNVSTVTQTTTITTTANQKVNGTTVVMVQPQKPSPTIAGTVISRSQSSLVEAFNKILNSKNLLPTYKPNLNPPADASLTLPPFGYRCLECGDSFALEKSLARHYDRRSMRIEVTCNHCTKRLVFFNKCSLLLHAREHKDKGLVMQCSHLVMRPIALDQMIGQPDITPLVSVTSFPAGKVAGVAQDALAAANGAPDLPILPLSSGLEQTNYSCFRCLECKEQCKDKAGLAAHFQQTVTTGTTSSTVCTTCPMIMSNRCSFNAHQRMHKNRPPHVCPECGGNFLLANFETHLKEACLHFSRRVGYRCPSCAVVFGGVNSIKSHIQTSHCEVFHKCPICPMAFKSAPSAHAHVYTQHPGFSNQQSKMIYKCAMCDTVFTHKPLLSSHFDQHLLNQRVSVFKCPDCPLLFAQKRTMLEHLKNTHQPQKPKDDLAKKAAVLLTPKQEPVETPVSKISEESSSSTEEDEPPSSPELRKTKRSRFQRKTVNKSKGSGWTCGVCHSWFPERDEYVSHMKKDHGKSVKKFPCHLCERSFCSAPSLRRHVRVNHEGIKRVYPCRYCTEGKRTFSSRLILEKHIQVRHGIKVTDQTKSQEVVIARIGTGPTQVSSRKRKLSSDEGDSCSEEPDSTTPPSKNPKGDRKAPFRCRKCGYLASSSADFQEHIPQHRTDESSHQCRECGLCFTSQVSLNRHRFITHKKKKGAGEMEEPGPRSPLEGGAQHMADGKLSCKVCGRCFDSQLNLKTHFRTHGMAFIRARQNASPEN
SIO_010081: ZNF687
subclass of: SO_0000673
so part of: ZNF687
location: join(220544..222790,225131..225309,225877..226053,226310..226472,226938..227234,227591..227703,228079..228220,228791..229264)
location: region:220544-229264:1
so has part: feature:220544-222790:1:exon
so has part: feature:225131-225309:1:exon
so has part: feature:225877-226053:1:exon
so has part: feature:226310-226472:1:exon
so has part: feature:226938-227234:1:exon
so has part: feature:227591-227703:1:exon
so has part: feature:228079-228220:1:exon
so has part: feature:228791-229264:1:exon

XP_040395201.1
type: Protein
SIO_000068: ncbiprotein

position:220544:1
position: 220544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:229264:1
position: 229264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:220544-222790:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:225131-225309:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:225877-226053:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:226310-226472:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:226938-227234:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:227591-227703:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228079-228220:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:228791-229264:1:exon

ZNF687
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: ZNF687
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 687
translation: MGDMKTPDFDDLLAAFDIPDIDTNEAIHSSHEEADAHIKQVPGEPGPPDHVLPHTDITAVSVIVKNTVCPEQLDALDGRSKDGHVIGPRLLQNGFGATEMPRSPTSRSVEAVASSNGECWVKEKGPKPLDIFSHFSPDPNEDNAANLIDRPRECKPKEKSLAVPSLSPSPTPSLDCKEPMGESTENLPPAFPQPFETSQAGGASGSPPAVPCIKKEESDSEEVGREASPKGLAAALGDSPLEHLKSVTVRYSTGDSPIASWPGSDPNLDSSTSNLPEVKRSPTSPREPFFKPSSPMVQSPRLPPSPKQLDDIALKEEQEALEKSMGSPQSMSSAEEEEEEDDNNNDSPSSNSSRPLKVRIKTIKTSCGSITRTVTRVSSDSEPGSTKGTAEQSSQEPSLEGISFSGSAEKEDGIVLEVPKEKMDLSSPLKTIEGPKIVSVQLGNGTKIKGTVLPVSTIQNASSAMLIAASVAQQKSVVLPSKTGKAVAKNIINLVPQTLPKADTRTNVSTVTQTTTITTTANQKVNGTTVVMVQPQKPSPTIAGTVISRSQSSLVEAFNKILNSKNLLPTYKPNLNPPADASLTLPPFGYRCLECGDSFALEKSLARHYDRRSMRIEVTCNHCTKRLVFFNKCSLLLHAREHKDKGLVMQCSHLVMRPIALDQMIGQPDITPLVSVTSFPAGKVAGVAQDALAAANGAPDLPILPLSSGLEQTNYSCFRCLECKEQCKDKAGLAAHFQQTVTTGTTSSTVCTTCPMIMSNRCSFNAHQRMHKNRPPHVCPECGGNFLLANFETHLKEACLHFSRRVGYRCPSCAVVFGGVNSIKSHIQTSHCEVFHKCPICPMAFKSAPSAHAHVYTQHPGFSNQQSKMIYKCAMCDTVFTHKPLLSSHFDQHLLNQRVSVFKCPDCPLLFAQKRTMLEHLKNTHQPQKPKDDLAKKAAVLLTPKQEPVETPVSKISEESSSSTEEDEPPSSPELRKTKRSRFQRKTVNKSKGSGWTCGVCHSWFPERDEYVSHMKKDHGKSVKKFPCHLCERSFCSAPSLRRHVRVNHEGIKRVYPCRYCTEGKRTFSSRLILEKHIQVRHGIKVTDQTKSQEVVIARIGTGPTQVSSRKRKLSSDEGDSCSEEPDSTTPPSKNPKGDRKAPFRCRKCGYLASSSADFQEHIPQHRTDESSHQCRECGLCFTSQVSLNRHRFITHKKKKGAGEMEEPGPRSPLEGGAQHMADGKLSCKVCGRCFDSQLNLKTHFRTHGMAFIRARQNASPEN
SIO_010081: ZNF687
subclass of: SO_0000673
so part of: ZNF687
location: join(220544..222790,225131..225309,225877..226053,226310..226472,226938..227234,227591..227703,228079..228220,228791..229264)
location: region:220544-229264:1
so has part: feature:220544-222790:1:exon
so has part: feature:225131-225309:1:exon
so has part: feature:225877-226053:1:exon
so has part: feature:226310-226472:1:exon
so has part: feature:226938-227234:1:exon
so has part: feature:227591-227703:1:exon
so has part: feature:228079-228220:1:exon
so has part: feature:228791-229264:1:exon

XP_040395202.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:220544-222790:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:225131-225309:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:225877-226053:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:226310-226472:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:226938-227234:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:227591-227703:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228079-228220:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:228791-229264:1:exon

ZNF687
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: ZNF687
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 687
translation: MGDMKTPDFDDLLAAFDIPDIDTNEAIHSSHEEADAHIKQVPGEPGPPDHVLPHTDITAVSVIVKNTVCPEQLDALDGRSKDGHVIGPRLLQNGFGATEMPRSPTSRSVEAVASSNGECWVKEKGPKPLDIFSHFSPDPNEDNAANLIDRPRECKPKEKSLAVPSLSPSPTPSLDCKEPMGESTENLPPAFPQPFETSQAGGASGSPPAVPCIKKEESDSEEVGREASPKGLAAALGDSPLEHLKSVTVRYSTGDSPIASWPGSDPNLDSSTSNLPEVKRSPTSPREPFFKPSSPMVQSPRLPPSPKQLDDIALKEEQEALEKSMGSPQSMSSAEEEEEEDDNNNDSPSSNSSRPLKVRIKTIKTSCGSITRTVTRVSSDSEPGSTKGTAEQSSQEPSLEGISFSGSAEKEDGIVLEVPKEKMDLSSPLKTIEGPKIVSVQLGNGTKIKGTVLPVSTIQNASSAMLIAASVAQQKSVVLPSKTGKAVAKNIINLVPQTLPKADTRTNVSTVTQTTTITTTANQKVNGTTVVMVQPQKPSPTIAGTVISRSQSSLVEAFNKILNSKNLLPTYKPNLNPPADASLTLPPFGYRCLECGDSFALEKSLARHYDRRSMRIEVTCNHCTKRLVFFNKCSLLLHAREHKDKGLVMQCSHLVMRPIALDQMIGQPDITPLVSVTSFPAGKVAGVAQDALAAANGAPDLPILPLSSGLEQTNYSCFRCLECKEQCKDKAGLAAHFQQTVTTGTTSSTVCTTCPMIMSNRCSFNAHQRMHKNRPPHVCPECGGNFLLANFETHLKEACLHFSRRVGYRCPSCAVVFGGVNSIKSHIQTSHCEVFHKCPICPMAFKSAPSAHAHVYTQHPGFSNQQSKMIYKCAMCDTVFTHKPLLSSHFDQHLLNQRVSVFKCPDCPLLFAQKRTMLEHLKNTHQPQKPKDDLAKKAAVLLTPKQEPVETPVSKISEESSSSTEEDEPPSSPELRKTKRSRFQRKTVNKSKGSGWTCGVCHSWFPERDEYVSHMKKDHGKSVKKFPCHLCERSFCSAPSLRRHVRVNHEGIKRVYPCRYCTEGKRTFSSRLILEKHIQVRHGIKVTDQTKSQEVVIARIGTGPTQVSSRKRKLSSDEGDSCSEEPDSTTPPSKNPKGDRKAPFRCRKCGYLASSSADFQEHIPQHRTDESSHQCRECGLCFTSQVSLNRHRFITHKKKKGAGEMEEPGPRSPLEGGAQHMADGKLSCKVCGRCFDSQLNLKTHFRTHGMAFIRARQNASPEN
SIO_010081: ZNF687
subclass of: SO_0000673
so part of: ZNF687
location: join(220544..222790,225131..225309,225877..226053,226310..226472,226938..227234,227591..227703,228079..228220,228791..229264)
location: region:220544-229264:1
so has part: feature:220544-222790:1:exon
so has part: feature:225131-225309:1:exon
so has part: feature:225877-226053:1:exon
so has part: feature:226310-226472:1:exon
so has part: feature:226938-227234:1:exon
so has part: feature:227591-227703:1:exon
so has part: feature:228079-228220:1:exon
so has part: feature:228791-229264:1:exon

XP_040395204.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:220544-222790:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:225131-225309:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:225877-226053:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:226310-226472:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:226938-227234:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:227591-227703:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228079-228220:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:228791-229264:1:exon

ZNF687
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: ZNF687
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 687
translation: MGDMKTPDFDDLLAAFDIPDIDTNEAIHSSHEEADAHIKQVPGEPGPPDHVLPHTDITAVSVIVKNTVCPEQLDALDGRSKDGHVIGPRLLQNGFGATEMPRSPTSRSVEAVASSNGECWVKEKGPKPLDIFSHFSPDPNEDNAANLIDRPRECKPKEKSLAVPSLSPSPTPSLDCKEPMGESTENLPPAFPQPFETSQAGGASGSPPAVPCIKKEESDSEEVGREASPKGLAAALGDSPLEHLKSVTVRYSTGDSPIASWPGSDPNLDSSTSNLPEVKRSPTSPREPFFKPSSPMVQSPRLPPSPKQLDDIALKEEQEALEKSMGSPQSMSSAEEEEEEDDNNNDSPSSNSSRPLKVRIKTIKTSCGSITRTVTRVSSDSEPGSTKGTAEQSSQEPSLEGISFSGSAEKEDGIVLEVPKEKMDLSSPLKTIEGPKIVSVQLGNGTKIKGTVLPVSTIQNASSAMLIAASVAQQKSVVLPSKTGKAVAKNIINLVPQTLPKADTRTNVSTVTQTTTITTTANQKVNGTTVVMVQPQKPSPTIAGTVISRSQSSLVEAFNKILNSKNLLPTYKPNLNPPADASLTLPPFGYRCLECGDSFALEKSLARHYDRRSMRIEVTCNHCTKRLVFFNKCSLLLHAREHKDKGLVMQCSHLVMRPIALDQMIGQPDITPLVSVTSFPAGKVAGVAQDALAAANGAPDLPILPLSSGLEQTNYSCFRCLECKEQCKDKAGLAAHFQQTVTTGTTSSTVCTTCPMIMSNRCSFNAHQRMHKNRPPHVCPECGGNFLLANFETHLKEACLHFSRRVGYRCPSCAVVFGGVNSIKSHIQTSHCEVFHKCPICPMAFKSAPSAHAHVYTQHPGFSNQQSKMIYKCAMCDTVFTHKPLLSSHFDQHLLNQRVSVFKCPDCPLLFAQKRTMLEHLKNTHQPQKPKDDLAKKAAVLLTPKQEPVETPVSKISEESSSSTEEDEPPSSPELRKTKRSRFQRKTVNKSKGSGWTCGVCHSWFPERDEYVSHMKKDHGKSVKKFPCHLCERSFCSAPSLRRHVRVNHEGIKRVYPCRYCTEGKRTFSSRLILEKHIQVRHGIKVTDQTKSQEVVIARIGTGPTQVSSRKRKLSSDEGDSCSEEPDSTTPPSKNPKGDRKAPFRCRKCGYLASSSADFQEHIPQHRTDESSHQCRECGLCFTSQVSLNRHRFITHKKKKGAGEMEEPGPRSPLEGGAQHMADGKLSCKVCGRCFDSQLNLKTHFRTHGMAFIRARQNASPEN
SIO_010081: ZNF687
subclass of: SO_0000673
so part of: ZNF687
location: join(220544..222790,225131..225309,225877..226053,226310..226472,226938..227234,227591..227703,228079..228220,228791..229264)
location: region:220544-229264:1
so has part: feature:220544-222790:1:exon
so has part: feature:225131-225309:1:exon
so has part: feature:225877-226053:1:exon
so has part: feature:226310-226472:1:exon
so has part: feature:226938-227234:1:exon
so has part: feature:227591-227703:1:exon
so has part: feature:228079-228220:1:exon
so has part: feature:228791-229264:1:exon

XP_040395205.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:220544-222790:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:225131-225309:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:225877-226053:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:226310-226472:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:226938-227234:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:227591-227703:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:228079-228220:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:228791-229264:1:exon

PI4KB
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: PI4KB
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(231653..256810)
location: region:231653-256810:-1
so has part: feature:231653-256810:-1:exon
subclass of: SO_0000010

121061012
type: Gene
SIO_000068: ncbigene

position:231653:-1
position: 231653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:256810:-1
position: 256810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:231653-256810:-1:exon

PI4KB
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PI4KB
product: phosphatidylinositol 4-kinase beta, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 55 long SRA reads, 10 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_040539278.1
SIO_010081: PI4KB
subclass of: SO_0000673
so part of: PI4KB
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urn:…
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urn:…
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PI4KB
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PI4KB
product: phosphatidylinositol 4-kinase beta, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 long SRA reads, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_040539276.1
SIO_010081: PI4KB
subclass of: SO_0000673
so part of: PI4KB
location: complement(join(231653..233721,234322..234442,234787..234919,235095..235360,235450..235573,236231..236335,236881..236990,237210..237437,237613..237840,242010..242054,249605..250550,256705..256793))
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urn:…
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PI4KB
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PI4KB
product: phosphatidylinositol 4-kinase beta, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 long SRA reads, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040539274.1
SIO_010081: PI4KB
subclass of: SO_0000673
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SIO_000300: 12
SIO_000628: feature:231653-233721:-1:exon

PI4KB
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PI4KB
product: phosphatidylinositol 4-kinase beta, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 long SRA reads, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040539277.1
SIO_010081: PI4KB
subclass of: SO_0000673
so part of: PI4KB
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position:256510:-1
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urn:…
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SIO_000300: 11
SIO_000628: feature:231653-233721:-1:exon

PI4KB
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PI4KB
product: phosphatidylinositol 4-kinase beta, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040539272.1
SIO_010081: PI4KB
subclass of: SO_0000673
so part of: PI4KB
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PI4KB
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PI4KB
product: phosphatidylinositol 4-kinase beta, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 long SRA reads, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040539273.1
SIO_010081: PI4KB
subclass of: SO_0000673
so part of: PI4KB
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urn:…
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PI4KB
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PI4KB
product: phosphatidylinositol 4-kinase beta, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_040539279.1
SIO_010081: PI4KB
subclass of: SO_0000673
so part of: PI4KB
location: complement(join(231653..233721,234322..234442,234787..234919,235095..235360,235450..235573,236231..236335,236881..236990,237210..237437,237613..237840,242010..242054,249605..250550,250676..250787))
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SIO_000628: feature:231653-233721:-1:exon

PI4KB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PI4KB
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatidylinositol 4-kinase beta isoform X2
translation: MGFVAPLRPAIWKRGVTPRSCGWSSEACRPTTAMGDSVGDPVPSSAPQGNGGTSLSVITEGVGELAVIDPEVAKKACEEVLEKVKLMHGVSSDSLTKAADGSEAERAPRTAVDLPNGDVVEGCEIRCLDDLPSTASKIQEEDETTANTVKTARKRQKNNSAKQSWLLRLFESKLFDISMAISYLYNSKEPGVQAYIGNRLFCFRNEEVDFYLPQLLNMYIHMDEDVGDAIKPYIVHRCRQSINFSLQCALLLGAYSSDMHISTQRHSRGTKLRKLILSDELKPAHKKRELPSLSPAPDMGLSPSKRTHQRSKSDATVTISLSSNLKRTASNPKVESEEEPVRLAPEREFIKSLIAIGKRLATLPTKEQKTQRLISELSLLNHKLPARAWLPTAGFDHHVVRVPHTQAVVLNSKDKAPYLIYVEVLECDNFDTANVPARIPENRIRSTRSAENLPECGITHEQRTSSFTTVPNYDNDDEAWSVDDIVELQVELPEIHTNSCDNISQFSVDSITSQESREPVFIAAGDIRRRLSEQLAHTPTAFKRDPEDPSAVALKEPWQEKVRRIREGSPYGHLPSWRLLSVIVKCGDDLRQELLAFQVLKQLQSIWEQERVPLWIKPYKILVISADSGMIEPVVNAVSIHQIKKQSLLSLLDYFLQEHGNYNTESFLTAQRNFVQSCAGYCLVCYLLQVKDRHNGNILLDADGHIIHIDFGFILSSSPRNLGFETSAFKLTTEFVDVMGGPDGDMFNYYKMLMLQGLIAARKHMDKVVQIVEIMQQGSQLPCFHGSSTIRNLKERFHMNMTEEQLQLLIEQMVDGSMRSITTKLYDGFQYLTNGIM
SIO_010081: PI4KB
subclass of: SO_0000673
so part of: PI4KB
location: complement(join(233540..233721,234322..234442,234787..234919,235095..235360,235450..235573,236231..236335,236881..236990,237210..237437,237613..237840,249605..250550,253956..254026))
location: region:233540-254026:-1
so has part: feature:253956-254026:-1:exon
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so has part: feature:235450-235573:-1:exon
so has part: feature:235095-235360:-1:exon
so has part: feature:234787-234919:-1:exon
so has part: feature:234322-234442:-1:exon
so has part: feature:233540-233721:-1:exon

XP_040395207.1
type: Protein
SIO_000068: ncbiprotein

position:233540:-1
position: 233540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:254026:-1
position: 254026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:253956-254026:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:249605-250550:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:237613-237840:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:237210-237437:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:236881-236990:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:236231-236335:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:235450-235573:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:235095-235360:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:234787-234919:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:234322-234442:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:233540-233721:-1:exon

PI4KB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PI4KB
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatidylinositol 4-kinase beta isoform X1
translation: MGFVAPLRPAIWKRGVTPRSCGWSSEACRPTTAMGDSVGDPVPSSAPQGNGGTSLSVITEGVGELAVIDPEVAKKACEEVLEKVKLMHGVSSDSLTKAADGSEAERAPRTAVDLPNGDVVEGCEIRCLDDLPSTASKIQEEDETTANTVKTARKRQKNNSAKQSWLLRLFESKLFDISMAISYLYNSKEPGVQAYIGNRLFCFRNEEVDFYLPQLLNMYIHMDEDVGDAIKPYIVHRCRQSINFSLQCALLLGAYSSDMHISTQRHSRGTKLRKLILSDELKPAHKKRELPSLSPAPDMGLSPSKRTHQRSKSDATVTISLSSNLKRTASNPKVESEEEELSSSTESLDKSFCSPVRLAPEREFIKSLIAIGKRLATLPTKEQKTQRLISELSLLNHKLPARAWLPTAGFDHHVVRVPHTQAVVLNSKDKAPYLIYVEVLECDNFDTANVPARIPENRIRSTRSAENLPECGITHEQRTSSFTTVPNYDNDDEAWSVDDIVELQVELPEIHTNSCDNISQFSVDSITSQESREPVFIAAGDIRRRLSEQLAHTPTAFKRDPEDPSAVALKEPWQEKVRRIREGSPYGHLPSWRLLSVIVKCGDDLRQELLAFQVLKQLQSIWEQERVPLWIKPYKILVISADSGMIEPVVNAVSIHQIKKQSLLSLLDYFLQEHGNYNTESFLTAQRNFVQSCAGYCLVCYLLQVKDRHNGNILLDADGHIIHIDFGFILSSSPRNLGFETSAFKLTTEFVDVMGGPDGDMFNYYKMLMLQGLIAARKHMDKVVQIVEIMQQGSQLPCFHGSSTIRNLKERFHMNMTEEQLQLLIEQMVDGSMRSITTKLYDGFQYLTNGIM
SIO_010081: PI4KB
subclass of: SO_0000673
so part of: PI4KB
location: complement(join(233540..233721,234322..234442,234787..234919,235095..235360,235450..235573,236231..236335,236881..236990,237210..237437,237613..237840,242010..242054,249605..250550,253956..254026))
location: region:233540-254026:-1
so has part: feature:253956-254026:-1:exon
so has part: feature:249605-250550:-1:exon
so has part: feature:242010-242054:-1:exon
so has part: feature:237613-237840:-1:exon
so has part: feature:237210-237437:-1:exon
so has part: feature:236881-236990:-1:exon
so has part: feature:236231-236335:-1:exon
so has part: feature:235450-235573:-1:exon
so has part: feature:235095-235360:-1:exon
so has part: feature:234787-234919:-1:exon
so has part: feature:234322-234442:-1:exon
so has part: feature:233540-233721:-1:exon

XP_040395206.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:253956-254026:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:249605-250550:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:242010-242054:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:237613-237840:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:237210-237437:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:236881-236990:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:236231-236335:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:235450-235573:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:235095-235360:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:234787-234919:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:234322-234442:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:233540-233721:-1:exon

PI4KB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PI4KB
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatidylinositol 4-kinase beta isoform X4
translation: MGDSVGDPVPSSAPQGNGGTSLSVITEGVGELAVIDPEVAKKACEEVLEKVKLMHGVSSDSLTKAADGSEAERAPRTAVDLPNGDVVEGCEIRCLDDLPSTASKIQEEDETTANTVKTARKRQKNNSAKQSWLLRLFESKLFDISMAISYLYNSKEPGVQAYIGNRLFCFRNEEVDFYLPQLLNMYIHMDEDVGDAIKPYIVHRCRQSINFSLQCALLLGAYSSDMHISTQRHSRGTKLRKLILSDELKPAHKKRELPSLSPAPDMGLSPSKRTHQRSKSDATVTISLSSNLKRTASNPKVESEEEPVRLAPEREFIKSLIAIGKRLATLPTKEQKTQRLISELSLLNHKLPARAWLPTAGFDHHVVRVPHTQAVVLNSKDKAPYLIYVEVLECDNFDTANVPARIPENRIRSTRSAENLPECGITHEQRTSSFTTVPNYDNDDEAWSVDDIVELQVELPEIHTNSCDNISQFSVDSITSQESREPVFIAAGDIRRRLSEQLAHTPTAFKRDPEDPSAVALKEPWQEKVRRIREGSPYGHLPSWRLLSVIVKCGDDLRQELLAFQVLKQLQSIWEQERVPLWIKPYKILVISADSGMIEPVVNAVSIHQIKKQSLLSLLDYFLQEHGNYNTESFLTAQRNFVQSCAGYCLVCYLLQVKDRHNGNILLDADGHIIHIDFGFILSSSPRNLGFETSAFKLTTEFVDVMGGPDGDMFNYYKMLMLQGLIAARKHMDKVVQIVEIMQQGSQLPCFHGSSTIRNLKERFHMNMTEEQLQLLIEQMVDGSMRSITTKLYDGFQYLTNGIM
SIO_010081: PI4KB
subclass of: SO_0000673
so part of: PI4KB
location: complement(join(233540..233721,234322..234442,234787..234919,235095..235360,235450..235573,236231..236335,236881..236990,237210..237437,237613..237840,249605..250522))
location: region:233540-250522:-1
so has part: feature:249605-250522:-1:exon
so has part: feature:237613-237840:-1:exon
so has part: feature:237210-237437:-1:exon
so has part: feature:236881-236990:-1:exon
so has part: feature:236231-236335:-1:exon
so has part: feature:235450-235573:-1:exon
so has part: feature:235095-235360:-1:exon
so has part: feature:234787-234919:-1:exon
so has part: feature:234322-234442:-1:exon
so has part: feature:233540-233721:-1:exon

XP_040395211.1
type: Protein
SIO_000068: ncbiprotein

position:250522:-1
position: 250522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:249605-250522:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:237613-237840:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:237210-237437:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:236881-236990:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:236231-236335:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:235450-235573:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:235095-235360:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:234787-234919:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:234322-234442:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:233540-233721:-1:exon

PI4KB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PI4KB
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatidylinositol 4-kinase beta isoform X4
translation: MGDSVGDPVPSSAPQGNGGTSLSVITEGVGELAVIDPEVAKKACEEVLEKVKLMHGVSSDSLTKAADGSEAERAPRTAVDLPNGDVVEGCEIRCLDDLPSTASKIQEEDETTANTVKTARKRQKNNSAKQSWLLRLFESKLFDISMAISYLYNSKEPGVQAYIGNRLFCFRNEEVDFYLPQLLNMYIHMDEDVGDAIKPYIVHRCRQSINFSLQCALLLGAYSSDMHISTQRHSRGTKLRKLILSDELKPAHKKRELPSLSPAPDMGLSPSKRTHQRSKSDATVTISLSSNLKRTASNPKVESEEEPVRLAPEREFIKSLIAIGKRLATLPTKEQKTQRLISELSLLNHKLPARAWLPTAGFDHHVVRVPHTQAVVLNSKDKAPYLIYVEVLECDNFDTANVPARIPENRIRSTRSAENLPECGITHEQRTSSFTTVPNYDNDDEAWSVDDIVELQVELPEIHTNSCDNISQFSVDSITSQESREPVFIAAGDIRRRLSEQLAHTPTAFKRDPEDPSAVALKEPWQEKVRRIREGSPYGHLPSWRLLSVIVKCGDDLRQELLAFQVLKQLQSIWEQERVPLWIKPYKILVISADSGMIEPVVNAVSIHQIKKQSLLSLLDYFLQEHGNYNTESFLTAQRNFVQSCAGYCLVCYLLQVKDRHNGNILLDADGHIIHIDFGFILSSSPRNLGFETSAFKLTTEFVDVMGGPDGDMFNYYKMLMLQGLIAARKHMDKVVQIVEIMQQGSQLPCFHGSSTIRNLKERFHMNMTEEQLQLLIEQMVDGSMRSITTKLYDGFQYLTNGIM
SIO_010081: PI4KB
subclass of: SO_0000673
so part of: PI4KB
location: complement(join(233540..233721,234322..234442,234787..234919,235095..235360,235450..235573,236231..236335,236881..236990,237210..237437,237613..237840,249605..250522))
location: region:233540-250522:-1
so has part: feature:249605-250522:-1:exon
so has part: feature:237613-237840:-1:exon
so has part: feature:237210-237437:-1:exon
so has part: feature:236881-236990:-1:exon
so has part: feature:236231-236335:-1:exon
so has part: feature:235450-235573:-1:exon
so has part: feature:235095-235360:-1:exon
so has part: feature:234787-234919:-1:exon
so has part: feature:234322-234442:-1:exon
so has part: feature:233540-233721:-1:exon

XP_040395212.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:249605-250522:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:237613-237840:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:237210-237437:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:236881-236990:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:236231-236335:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:235450-235573:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:235095-235360:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:234787-234919:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:234322-234442:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:233540-233721:-1:exon

PI4KB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PI4KB
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatidylinositol 4-kinase beta isoform X3
translation: MGDSVGDPVPSSAPQGNGGTSLSVITEGVGELAVIDPEVAKKACEEVLEKVKLMHGVSSDSLTKAADGSEAERAPRTAVDLPNGDVVEGCEIRCLDDLPSTASKIQEEDETTANTVKTARKRQKNNSAKQSWLLRLFESKLFDISMAISYLYNSKEPGVQAYIGNRLFCFRNEEVDFYLPQLLNMYIHMDEDVGDAIKPYIVHRCRQSINFSLQCALLLGAYSSDMHISTQRHSRGTKLRKLILSDELKPAHKKRELPSLSPAPDMGLSPSKRTHQRSKSDATVTISLSSNLKRTASNPKVESEEEELSSSTESLDKSFCSPVRLAPEREFIKSLIAIGKRLATLPTKEQKTQRLISELSLLNHKLPARAWLPTAGFDHHVVRVPHTQAVVLNSKDKAPYLIYVEVLECDNFDTANVPARIPENRIRSTRSAENLPECGITHEQRTSSFTTVPNYDNDDEAWSVDDIVELQVELPEIHTNSCDNISQFSVDSITSQESREPVFIAAGDIRRRLSEQLAHTPTAFKRDPEDPSAVALKEPWQEKVRRIREGSPYGHLPSWRLLSVIVKCGDDLRQELLAFQVLKQLQSIWEQERVPLWIKPYKILVISADSGMIEPVVNAVSIHQIKKQSLLSLLDYFLQEHGNYNTESFLTAQRNFVQSCAGYCLVCYLLQVKDRHNGNILLDADGHIIHIDFGFILSSSPRNLGFETSAFKLTTEFVDVMGGPDGDMFNYYKMLMLQGLIAARKHMDKVVQIVEIMQQGSQLPCFHGSSTIRNLKERFHMNMTEEQLQLLIEQMVDGSMRSITTKLYDGFQYLTNGIM
SIO_010081: PI4KB
subclass of: SO_0000673
so part of: PI4KB
location: complement(join(233540..233721,234322..234442,234787..234919,235095..235360,235450..235573,236231..236335,236881..236990,237210..237437,237613..237840,242010..242054,249605..250522))
location: region:233540-250522:-1
so has part: feature:249605-250522:-1:exon
so has part: feature:242010-242054:-1:exon
so has part: feature:237613-237840:-1:exon
so has part: feature:237210-237437:-1:exon
so has part: feature:236881-236990:-1:exon
so has part: feature:236231-236335:-1:exon
so has part: feature:235450-235573:-1:exon
so has part: feature:235095-235360:-1:exon
so has part: feature:234787-234919:-1:exon
so has part: feature:234322-234442:-1:exon
so has part: feature:233540-233721:-1:exon

XP_040395208.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:249605-250522:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:242010-242054:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:237613-237840:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:237210-237437:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:236881-236990:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:236231-236335:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:235450-235573:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:235095-235360:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:234787-234919:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:234322-234442:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:233540-233721:-1:exon

PI4KB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PI4KB
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatidylinositol 4-kinase beta isoform X3
translation: MGDSVGDPVPSSAPQGNGGTSLSVITEGVGELAVIDPEVAKKACEEVLEKVKLMHGVSSDSLTKAADGSEAERAPRTAVDLPNGDVVEGCEIRCLDDLPSTASKIQEEDETTANTVKTARKRQKNNSAKQSWLLRLFESKLFDISMAISYLYNSKEPGVQAYIGNRLFCFRNEEVDFYLPQLLNMYIHMDEDVGDAIKPYIVHRCRQSINFSLQCALLLGAYSSDMHISTQRHSRGTKLRKLILSDELKPAHKKRELPSLSPAPDMGLSPSKRTHQRSKSDATVTISLSSNLKRTASNPKVESEEEELSSSTESLDKSFCSPVRLAPEREFIKSLIAIGKRLATLPTKEQKTQRLISELSLLNHKLPARAWLPTAGFDHHVVRVPHTQAVVLNSKDKAPYLIYVEVLECDNFDTANVPARIPENRIRSTRSAENLPECGITHEQRTSSFTTVPNYDNDDEAWSVDDIVELQVELPEIHTNSCDNISQFSVDSITSQESREPVFIAAGDIRRRLSEQLAHTPTAFKRDPEDPSAVALKEPWQEKVRRIREGSPYGHLPSWRLLSVIVKCGDDLRQELLAFQVLKQLQSIWEQERVPLWIKPYKILVISADSGMIEPVVNAVSIHQIKKQSLLSLLDYFLQEHGNYNTESFLTAQRNFVQSCAGYCLVCYLLQVKDRHNGNILLDADGHIIHIDFGFILSSSPRNLGFETSAFKLTTEFVDVMGGPDGDMFNYYKMLMLQGLIAARKHMDKVVQIVEIMQQGSQLPCFHGSSTIRNLKERFHMNMTEEQLQLLIEQMVDGSMRSITTKLYDGFQYLTNGIM
SIO_010081: PI4KB
subclass of: SO_0000673
so part of: PI4KB
location: complement(join(233540..233721,234322..234442,234787..234919,235095..235360,235450..235573,236231..236335,236881..236990,237210..237437,237613..237840,242010..242054,249605..250522))
location: region:233540-250522:-1
so has part: feature:249605-250522:-1:exon
so has part: feature:242010-242054:-1:exon
so has part: feature:237613-237840:-1:exon
so has part: feature:237210-237437:-1:exon
so has part: feature:236881-236990:-1:exon
so has part: feature:236231-236335:-1:exon
so has part: feature:235450-235573:-1:exon
so has part: feature:235095-235360:-1:exon
so has part: feature:234787-234919:-1:exon
so has part: feature:234322-234442:-1:exon
so has part: feature:233540-233721:-1:exon

XP_040395210.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:249605-250522:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:242010-242054:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:237613-237840:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:237210-237437:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:236881-236990:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:236231-236335:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:235450-235573:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:235095-235360:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:234787-234919:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:234322-234442:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:233540-233721:-1:exon

PI4KB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PI4KB
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatidylinositol 4-kinase beta isoform X3
translation: MGDSVGDPVPSSAPQGNGGTSLSVITEGVGELAVIDPEVAKKACEEVLEKVKLMHGVSSDSLTKAADGSEAERAPRTAVDLPNGDVVEGCEIRCLDDLPSTASKIQEEDETTANTVKTARKRQKNNSAKQSWLLRLFESKLFDISMAISYLYNSKEPGVQAYIGNRLFCFRNEEVDFYLPQLLNMYIHMDEDVGDAIKPYIVHRCRQSINFSLQCALLLGAYSSDMHISTQRHSRGTKLRKLILSDELKPAHKKRELPSLSPAPDMGLSPSKRTHQRSKSDATVTISLSSNLKRTASNPKVESEEEELSSSTESLDKSFCSPVRLAPEREFIKSLIAIGKRLATLPTKEQKTQRLISELSLLNHKLPARAWLPTAGFDHHVVRVPHTQAVVLNSKDKAPYLIYVEVLECDNFDTANVPARIPENRIRSTRSAENLPECGITHEQRTSSFTTVPNYDNDDEAWSVDDIVELQVELPEIHTNSCDNISQFSVDSITSQESREPVFIAAGDIRRRLSEQLAHTPTAFKRDPEDPSAVALKEPWQEKVRRIREGSPYGHLPSWRLLSVIVKCGDDLRQELLAFQVLKQLQSIWEQERVPLWIKPYKILVISADSGMIEPVVNAVSIHQIKKQSLLSLLDYFLQEHGNYNTESFLTAQRNFVQSCAGYCLVCYLLQVKDRHNGNILLDADGHIIHIDFGFILSSSPRNLGFETSAFKLTTEFVDVMGGPDGDMFNYYKMLMLQGLIAARKHMDKVVQIVEIMQQGSQLPCFHGSSTIRNLKERFHMNMTEEQLQLLIEQMVDGSMRSITTKLYDGFQYLTNGIM
SIO_010081: PI4KB
subclass of: SO_0000673
so part of: PI4KB
location: complement(join(233540..233721,234322..234442,234787..234919,235095..235360,235450..235573,236231..236335,236881..236990,237210..237437,237613..237840,242010..242054,249605..250522))
location: region:233540-250522:-1
so has part: feature:249605-250522:-1:exon
so has part: feature:242010-242054:-1:exon
so has part: feature:237613-237840:-1:exon
so has part: feature:237210-237437:-1:exon
so has part: feature:236881-236990:-1:exon
so has part: feature:236231-236335:-1:exon
so has part: feature:235450-235573:-1:exon
so has part: feature:235095-235360:-1:exon
so has part: feature:234787-234919:-1:exon
so has part: feature:234322-234442:-1:exon
so has part: feature:233540-233721:-1:exon

XP_040395213.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:249605-250522:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:242010-242054:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:237613-237840:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:237210-237437:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:236881-236990:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:236231-236335:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:235450-235573:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:235095-235360:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:234787-234919:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:234322-234442:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:233540-233721:-1:exon

RFX5
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: RFX5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(257084..262211)
location: region:257084-262211:-1
so has part: feature:257084-262211:-1:exon
subclass of: SO_0000010

121061013
type: Gene
SIO_000068: ncbigene

position:257084:-1
position: 257084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:262211:-1
position: 262211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:257084-262211:-1:exon

RFX5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: RFX5
product: regulatory factor X5, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040539281.1
SIO_010081: RFX5
subclass of: SO_0000673
so part of: RFX5
location: complement(join(257084..258154,258317..258414,258589..258787,259093..259174,259629..259745,259961..260086,260247..260329,260780..260813,261433..261563,262061..262211))
location: region:257084-262211:-1
so has part: feature:262061-262211:-1:exon
so has part: feature:261433-261563:-1:exon
so has part: feature:260780-260813:-1:exon
so has part: feature:260247-260329:-1:exon
so has part: feature:259961-260086:-1:exon
so has part: feature:259629-259745:-1:exon
so has part: feature:259093-259174:-1:exon
so has part: feature:258589-258787:-1:exon
so has part: feature:258317-258414:-1:exon
so has part: feature:257084-258154:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:262061-262211:-1:exon

position:262061:-1
position: 262061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:261433-261563:-1:exon

position:261433:-1
position: 261433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:261563:-1
position: 261563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:260780-260813:-1:exon

position:260780:-1
position: 260780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:260813:-1
position: 260813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:260247-260329:-1:exon

position:260247:-1
position: 260247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:260329:-1
position: 260329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:259961-260086:-1:exon

position:259961:-1
position: 259961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:260086:-1
position: 260086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:259629-259745:-1:exon

position:259629:-1
position: 259629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:259745:-1
position: 259745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:259093-259174:-1:exon

position:259093:-1
position: 259093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:259174:-1
position: 259174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:258589-258787:-1:exon

position:258589:-1
position: 258589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:258787:-1
position: 258787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:258317-258414:-1:exon

position:258317:-1
position: 258317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:258414:-1
position: 258414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:257084-258154:-1:exon

position:258154:-1
position: 258154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RFX5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: RFX5
product: regulatory factor X5, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040539280.1
SIO_010081: RFX5
subclass of: SO_0000673
so part of: RFX5
location: complement(join(257084..258154,258317..258414,258589..258790,259093..259174,259629..259745,259961..260086,260247..260329,260780..260813,261433..261563,262061..262198))
location: region:257084-262198:-1
so has part: feature:262061-262198:-1:exon
so has part: feature:261433-261563:-1:exon
so has part: feature:260780-260813:-1:exon
so has part: feature:260247-260329:-1:exon
so has part: feature:259961-260086:-1:exon
so has part: feature:259629-259745:-1:exon
so has part: feature:259093-259174:-1:exon
so has part: feature:258589-258790:-1:exon
so has part: feature:258317-258414:-1:exon
so has part: feature:257084-258154:-1:exon

position:262198:-1
position: 262198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:262061-262198:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:261433-261563:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:260780-260813:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:260247-260329:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:259961-260086:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:259629-259745:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:259093-259174:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:258589-258790:-1:exon

position:258790:-1
position: 258790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:258317-258414:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:257084-258154:-1:exon

RFX5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: RFX5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA-binding protein RFX5 isoform X2
translation: MADKEPSAQAARKGSSSPSGSRGSTTEPSTLLQKLRSTISKSVQNKVDSILQDVQKFSDNDKLYLYLQLPSGPSLGEKSSSLDLSSLSMAEYMHACNWIRNHLEEHTDTCLPKQDVYDAYKQYCDNLCCHALSTANFGKIIREIFPNIKARRLGGRGQSKYCYSGIRRKTVVSLPPLPSLDLKVTETSELTDLVQSYNSEVMEAACALTCDWAEKILKRSFNNIVEVAQFLIQQHIISSRSARADLVMAMVVSESTEKLHRDGRSPLAAKKNGLEASESSDRSQGQSKKESSPKASVPPRPEKKKLPEPPRPASSPQVNALVARLPLLLPRIQPRERLVAPGATAVRSSPPVLAPKLTAAPLGGTVKVALPLPVGTASPSLPLGLAPGANGAGGLLSQQAAVPVLNMLLPGVGVPGAESPANPRSAGSDGPSPQDSQRPKATKRPPEPPGAAAAATPQKRKRGRPRKRPEDGGAGSPAEQEQAQGGPGDAEEKLGRGAAAGTGSADSSPGGAAATGGRLGASPVTQVSVIQEGRSGAQLPAGACGHGMEEEEDDEEEEEEEEAPPSAGEAGPPRGDTGADEGAPPPRGDGHRAGAAPADTARCGPVLPGGSPGGAELCAPPNT
SIO_010081: RFX5
subclass of: SO_0000673
so part of: RFX5
location: complement(join(257141..258154,258317..258414,258589..258787,259093..259174,259629..259745,259961..260086,260247..260329,260780..260813,261433..261551))
location: region:257141-261551:-1
so has part: feature:261433-261551:-1:exon
so has part: feature:260780-260813:-1:exon
so has part: feature:260247-260329:-1:exon
so has part: feature:259961-260086:-1:exon
so has part: feature:259629-259745:-1:exon
so has part: feature:259093-259174:-1:exon
so has part: feature:258589-258787:-1:exon
so has part: feature:258317-258414:-1:exon
so has part: feature:257141-258154:-1:exon

XP_040395215.1
type: Protein
SIO_000068: ncbiprotein

position:257141:-1
position: 257141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:261551:-1
position: 261551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:261433-261551:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:260780-260813:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:260247-260329:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:259961-260086:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:259629-259745:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:259093-259174:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:258589-258787:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:258317-258414:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:257141-258154:-1:exon

RFX5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: RFX5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA-binding protein RFX5 isoform X1
translation: MADKEPSAQAARKGSSSPSGSRGSTTEPSTLLQKLRSTISKSVQNKVDSILQDVQKFSDNDKLYLYLQLPSGPSLGEKSSSLDLSSLSMAEYMHACNWIRNHLEEHTDTCLPKQDVYDAYKQYCDNLCCHALSTANFGKIIREIFPNIKARRLGGRGQSKYCYSGIRRKTVVSLPPLPSLDLKVTETQSELTDLVQSYNSEVMEAACALTCDWAEKILKRSFNNIVEVAQFLIQQHIISSRSARADLVMAMVVSESTEKLHRDGRSPLAAKKNGLEASESSDRSQGQSKKESSPKASVPPRPEKKKLPEPPRPASSPQVNALVARLPLLLPRIQPRERLVAPGATAVRSSPPVLAPKLTAAPLGGTVKVALPLPVGTASPSLPLGLAPGANGAGGLLSQQAAVPVLNMLLPGVGVPGAESPANPRSAGSDGPSPQDSQRPKATKRPPEPPGAAAAATPQKRKRGRPRKRPEDGGAGSPAEQEQAQGGPGDAEEKLGRGAAAGTGSADSSPGGAAATGGRLGASPVTQVSVIQEGRSGAQLPAGACGHGMEEEEDDEEEEEEEEAPPSAGEAGPPRGDTGADEGAPPPRGDGHRAGAAPADTARCGPVLPGGSPGGAELCAPPNT
SIO_010081: RFX5
subclass of: SO_0000673
so part of: RFX5
location: complement(join(257141..258154,258317..258414,258589..258790,259093..259174,259629..259745,259961..260086,260247..260329,260780..260813,261433..261551))
location: region:257141-261551:-1
so has part: feature:261433-261551:-1:exon
so has part: feature:260780-260813:-1:exon
so has part: feature:260247-260329:-1:exon
so has part: feature:259961-260086:-1:exon
so has part: feature:259629-259745:-1:exon
so has part: feature:259093-259174:-1:exon
so has part: feature:258589-258790:-1:exon
so has part: feature:258317-258414:-1:exon
so has part: feature:257141-258154:-1:exon

XP_040395214.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:261433-261551:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:260780-260813:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:260247-260329:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:259961-260086:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:259629-259745:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:259093-259174:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:258589-258790:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:258317-258414:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:257141-258154:-1:exon

LOC121061014
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: LOC121061014
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(263170..270705)
location: region:263170-270705:-1
so has part: feature:263170-270705:-1:exon
subclass of: SO_0000010

121061014
type: Gene
SIO_000068: ncbigene

position:263170:-1
position: 263170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:270705:-1
position: 270705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:263170-270705:-1:exon

LOC121061014
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121061014
product: methanethiol oxidase-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_040539282.1
SIO_010081: LOC121061014
subclass of: SO_0000673
so part of: LOC121061014
location: complement(join(263170..263873,263958..264076,264243..264335,264436..264557,264640..264718,265185..265363,265703..265885,266082..266202,266370..266555,266907..267019,268712..268765,270594..270705))
location: region:263170-270705:-1
so has part: feature:270594-270705:-1:exon
so has part: feature:268712-268765:-1:exon
so has part: feature:266907-267019:-1:exon
so has part: feature:266370-266555:-1:exon
so has part: feature:266082-266202:-1:exon
so has part: feature:265703-265885:-1:exon
so has part: feature:265185-265363:-1:exon
so has part: feature:264640-264718:-1:exon
so has part: feature:264436-264557:-1:exon
so has part: feature:264243-264335:-1:exon
so has part: feature:263958-264076:-1:exon
so has part: feature:263170-263873:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:270594-270705:-1:exon

position:270594:-1
position: 270594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:268712-268765:-1:exon

position:268712:-1
position: 268712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:268765:-1
position: 268765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:266907-267019:-1:exon

position:266907:-1
position: 266907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:267019:-1
position: 267019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:266370-266555:-1:exon

position:266370:-1
position: 266370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:266555:-1
position: 266555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:266082-266202:-1:exon

position:266082:-1
position: 266082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:266202:-1
position: 266202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:265703-265885:-1:exon

position:265703:-1
position: 265703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:265885:-1
position: 265885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:265185-265363:-1:exon

position:265185:-1
position: 265185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:265363:-1
position: 265363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:264640-264718:-1:exon

position:264640:-1
position: 264640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:264718:-1
position: 264718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:264436-264557:-1:exon

position:264436:-1
position: 264436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:264557:-1
position: 264557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:264243-264335:-1:exon

position:264243:-1
position: 264243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:264335:-1
position: 264335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:263958-264076:-1:exon

position:263958:-1
position: 263958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:264076:-1
position: 264076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:263170-263873:-1:exon

position:263873:-1
position: 263873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121061014
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121061014
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: methanethiol oxidase-like
translation: MQAGAPSSASHQQVKSPSTASSTERCGACGPGFASPLDAMKGPREEILYVPCIYRNTGRNKPDFLATVDVNPESPNYCQVIHRLPMPNVGDELHHSGWNTCSSCFGDTTKKRNRLILPSLISSRIYVVDVGTDPRAPRLFKVVNPEDVFWKCNLGYPHTSHCLGSGEIMISTLGDPAGNGKGGFILLDGETFEIKGNWEKGDKSPPMGYDFWYQPRHNVLISTEWGVPKCLGYGFDPNDLKKGRYGCRLNVWDWTTHTYVQAIDVGEDAAPLEIRFLHNPDAAEGFVGCTISSAIHRFYRTKRGDWAAEKVIQVPSKKVEGWLLPDMPGFITDILISLDDRFLYFSNWLHGDVRQYDISDTRRPRLVGQVFVGGSITKGGTVAVCGDEELQSQPDPFVIQGKRVSGGPQMIQLSLDGKRLYVTTSLYSAWDRQFYPQLIRDGSVMLQLDVDTEKGGLTVNQNFLVDFGKEPGGPCLAHEIRYPGGDCTSDIWI
SIO_010081: LOC121061014
subclass of: SO_0000673
so part of: LOC121061014
location: complement(join(263711..263873,263958..264076,264243..264335,264436..264557,264640..264718,265185..265363,265703..265885,266082..266202,266370..266555,266907..267019,268712..268765,270594..270663))
location: region:263711-270663:-1
so has part: feature:270594-270663:-1:exon
so has part: feature:268712-268765:-1:exon
so has part: feature:266907-267019:-1:exon
so has part: feature:266370-266555:-1:exon
so has part: feature:266082-266202:-1:exon
so has part: feature:265703-265885:-1:exon
so has part: feature:265185-265363:-1:exon
so has part: feature:264640-264718:-1:exon
so has part: feature:264436-264557:-1:exon
so has part: feature:264243-264335:-1:exon
so has part: feature:263958-264076:-1:exon
so has part: feature:263711-263873:-1:exon

XP_040395216.1
type: Protein
SIO_000068: ncbiprotein

position:263711:-1
position: 263711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:270663:-1
position: 270663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:270594-270663:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:268712-268765:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:266907-267019:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:266370-266555:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:266082-266202:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:265703-265885:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:265185-265363:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:264640-264718:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:264436-264557:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:264243-264335:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:263958-264076:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:263711-263873:-1:exon

LOC121060682
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: LOC121060682
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(272347..279192)
location: region:272347-279192:-1
so has part: feature:272347-279192:-1:exon
subclass of: SO_0000010

121060682
type: Gene
SIO_000068: ncbigene

position:272347:-1
position: 272347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:279192:-1
position: 279192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:272347-279192:-1:exon

LOC121060682
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060682
product: methanethiol oxidase-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_040538675.1
SIO_010081: LOC121060682
subclass of: SO_0000673
so part of: LOC121060682
location: complement(join(272347..272556,273061..273255,273804..273922,274174..274266,274366..274487,274668..274746,275338..275522,275855..276037,276529..276649,277154..277339,277911..278023,278393..278446,279038..279192))
location: region:272347-279192:-1
so has part: feature:279038-279192:-1:exon
so has part: feature:278393-278446:-1:exon
so has part: feature:277911-278023:-1:exon
so has part: feature:277154-277339:-1:exon
so has part: feature:276529-276649:-1:exon
so has part: feature:275855-276037:-1:exon
so has part: feature:275338-275522:-1:exon
so has part: feature:274668-274746:-1:exon
so has part: feature:274366-274487:-1:exon
so has part: feature:274174-274266:-1:exon
so has part: feature:273804-273922:-1:exon
so has part: feature:273061-273255:-1:exon
so has part: feature:272347-272556:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:279038-279192:-1:exon

position:279038:-1
position: 279038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:278393-278446:-1:exon

position:278393:-1
position: 278393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:278446:-1
position: 278446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:277911-278023:-1:exon

position:277911:-1
position: 277911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:278023:-1
position: 278023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:277154-277339:-1:exon

position:277154:-1
position: 277154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:277339:-1
position: 277339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:276529-276649:-1:exon

position:276529:-1
position: 276529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:276649:-1
position: 276649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:275855-276037:-1:exon

position:275855:-1
position: 275855
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:276037:-1
position: 276037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:275338-275522:-1:exon

position:275338:-1
position: 275338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:275522:-1
position: 275522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:274668-274746:-1:exon

position:274668:-1
position: 274668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:274746:-1
position: 274746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:274366-274487:-1:exon

position:274366:-1
position: 274366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:274487:-1
position: 274487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:274174-274266:-1:exon

position:274174:-1
position: 274174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:274266:-1
position: 274266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:273804-273922:-1:exon

position:273804:-1
position: 273804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:273922:-1
position: 273922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:273061-273255:-1:exon

position:273061:-1
position: 273061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:273255:-1
position: 273255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:272347-272556:-1:exon

position:272556:-1
position: 272556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121060682
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060682
product: methanethiol oxidase-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_040538674.1
SIO_010081: LOC121060682
subclass of: SO_0000673
so part of: LOC121060682
location: complement(join(272347..273255,273804..273922,274174..274266,274366..274487,274668..274746,275338..275522,275855..276037,276529..276649,277154..277339,277911..278023,278393..278446,279038..279192))
location: region:272347-279192:-1
so has part: feature:279038-279192:-1:exon
so has part: feature:278393-278446:-1:exon
so has part: feature:277911-278023:-1:exon
so has part: feature:277154-277339:-1:exon
so has part: feature:276529-276649:-1:exon
so has part: feature:275855-276037:-1:exon
so has part: feature:275338-275522:-1:exon
so has part: feature:274668-274746:-1:exon
so has part: feature:274366-274487:-1:exon
so has part: feature:274174-274266:-1:exon
so has part: feature:273804-273922:-1:exon
so has part: feature:272347-273255:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:279038-279192:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:278393-278446:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:277911-278023:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:277154-277339:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:276529-276649:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:275855-276037:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:275338-275522:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:274668-274746:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:274366-274487:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:274174-274266:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:273804-273922:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:272347-273255:-1:exon

LOC121060682
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060682
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: methanethiol oxidase-like
translation: MDRCRLQCYDYPVCPDVVKVPREELAYVTCTYRETCINQPDFLATVDLNPRSPYYCQVIHRLPMPNLKDELHSSGWSAGSVCFDNITTKRNKLILPCLISSRIYVVDVGSQCRAPKLCKMIEPVDVFWKCNKGYLSIVHSLPNGDILIANMGDPAGNGKGGFIVLDGETFELKGNWENECEAPPTGYDFWYQPCHNVLISSAGLVPKRAGRGFNPDDLKKGVFGRRLNVWNLSCRTLTQCFDLGEDSLPLSVKFLHNPNAAEGYVSCALSGIIYRFYKACCERDTWSVEEVIQIPAKDVTGWILPKMPAFTADMVISLDDKYLYLSNWLHGDIRQYEISKTCKPRLVGQVFVGGSILRGGPVTVCRDEELKCQPEPLVIKCKRVYGGPCKMQLSVDGKRLYVTNSFYSTWDKQFYPNVVKEGSVMLQIDVDTEKGGLTVNKNFLVDFGKEPNGPCLAHAIRFPCGDSTSDILA
SIO_010081: LOC121060682
subclass of: SO_0000673
so part of: LOC121060682
location: complement(join(273093..273255,273804..273922,274174..274266,274366..274487,274668..274746,275338..275522,275855..276037,276529..276649,277154..277339,277911..278023,278393..278446,279038..279041))
location: region:273093-279041:-1
so has part: feature:279038-279041:-1:exon
so has part: feature:278393-278446:-1:exon
so has part: feature:277911-278023:-1:exon
so has part: feature:277154-277339:-1:exon
so has part: feature:276529-276649:-1:exon
so has part: feature:275855-276037:-1:exon
so has part: feature:275338-275522:-1:exon
so has part: feature:274668-274746:-1:exon
so has part: feature:274366-274487:-1:exon
so has part: feature:274174-274266:-1:exon
so has part: feature:273804-273922:-1:exon
so has part: feature:273093-273255:-1:exon

XP_040394608.1
type: Protein
SIO_000068: ncbiprotein

position:273093:-1
position: 273093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:279041:-1
position: 279041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:279038-279041:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:278393-278446:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:277911-278023:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:277154-277339:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:276529-276649:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:275855-276037:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:275338-275522:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:274668-274746:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:274366-274487:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:274174-274266:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:273804-273922:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:273093-273255:-1:exon

LOC121060682
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060682
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: methanethiol oxidase-like
translation: MDRCRLQCYDYPVCPDVVKVPREELAYVTCTYRETCINQPDFLATVDLNPRSPYYCQVIHRLPMPNLKDELHSSGWSAGSVCFDNITTKRNKLILPCLISSRIYVVDVGSQCRAPKLCKMIEPVDVFWKCNKGYLSIVHSLPNGDILIANMGDPAGNGKGGFIVLDGETFELKGNWENECEAPPTGYDFWYQPCHNVLISSAGLVPKRAGRGFNPDDLKKGVFGRRLNVWNLSCRTLTQCFDLGEDSLPLSVKFLHNPNAAEGYVSCALSGIIYRFYKACCERDTWSVEEVIQIPAKDVTGWILPKMPAFTADMVISLDDKYLYLSNWLHGDIRQYEISKTCKPRLVGQVFVGGSILRGGPVTVCRDEELKCQPEPLVIKCKRVYGGPCKMQLSVDGKRLYVTNSFYSTWDKQFYPNVVKEGSVMLQIDVDTEKGGLTVNKNFLVDFGKEPNGPCLAHAIRFPCGDSTSDILA
SIO_010081: LOC121060682
subclass of: SO_0000673
so part of: LOC121060682
location: complement(join(273093..273255,273804..273922,274174..274266,274366..274487,274668..274746,275338..275522,275855..276037,276529..276649,277154..277339,277911..278023,278393..278446,279038..279041))
location: region:273093-279041:-1
so has part: feature:279038-279041:-1:exon
so has part: feature:278393-278446:-1:exon
so has part: feature:277911-278023:-1:exon
so has part: feature:277154-277339:-1:exon
so has part: feature:276529-276649:-1:exon
so has part: feature:275855-276037:-1:exon
so has part: feature:275338-275522:-1:exon
so has part: feature:274668-274746:-1:exon
so has part: feature:274366-274487:-1:exon
so has part: feature:274174-274266:-1:exon
so has part: feature:273804-273922:-1:exon
so has part: feature:273093-273255:-1:exon

XP_040394609.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:279038-279041:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:278393-278446:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:277911-278023:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:277154-277339:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:276529-276649:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:275855-276037:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:275338-275522:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:274668-274746:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:274366-274487:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:274174-274266:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:273804-273922:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:273093-273255:-1:exon

LOC121060681
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: LOC121060681
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(286728..293694)
location: region:286728-293694:-1
so has part: feature:286728-293694:-1:exon
subclass of: SO_0000010

121060681
type: Gene
SIO_000068: ncbigene

position:286728:-1
position: 286728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:293694:-1
position: 293694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:286728-293694:-1:exon

LOC121060681
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060681
product: methanethiol oxidase-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_040538673.1
SIO_010081: LOC121060681
subclass of: SO_0000673
so part of: LOC121060681
location: complement(join(286728..286937,287442..287636,288185..288303,288553..288645,288745..288866,289047..289125,289717..289901,290234..290416,290506..290626,291131..291316,292421..292533,292894..292947,293539..293694))
location: region:286728-293694:-1
so has part: feature:293539-293694:-1:exon
so has part: feature:292894-292947:-1:exon
so has part: feature:292421-292533:-1:exon
so has part: feature:291131-291316:-1:exon
so has part: feature:290506-290626:-1:exon
so has part: feature:290234-290416:-1:exon
so has part: feature:289717-289901:-1:exon
so has part: feature:289047-289125:-1:exon
so has part: feature:288745-288866:-1:exon
so has part: feature:288553-288645:-1:exon
so has part: feature:288185-288303:-1:exon
so has part: feature:287442-287636:-1:exon
so has part: feature:286728-286937:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:293539-293694:-1:exon

position:293539:-1
position: 293539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:292894-292947:-1:exon

position:292894:-1
position: 292894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:292947:-1
position: 292947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:292421-292533:-1:exon

position:292421:-1
position: 292421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:292533:-1
position: 292533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:291131-291316:-1:exon

position:291131:-1
position: 291131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:291316:-1
position: 291316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:290506-290626:-1:exon

position:290506:-1
position: 290506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:290626:-1
position: 290626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:290234-290416:-1:exon

position:290234:-1
position: 290234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:290416:-1
position: 290416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:289717-289901:-1:exon

position:289717:-1
position: 289717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:289901:-1
position: 289901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:289047-289125:-1:exon

position:289047:-1
position: 289047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:289125:-1
position: 289125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:288745-288866:-1:exon

position:288745:-1
position: 288745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:288866:-1
position: 288866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:288553-288645:-1:exon

position:288553:-1
position: 288553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:288645:-1
position: 288645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:288185-288303:-1:exon

position:288185:-1
position: 288185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:288303:-1
position: 288303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:287442-287636:-1:exon

position:287442:-1
position: 287442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:287636:-1
position: 287636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:286728-286937:-1:exon

position:286937:-1
position: 286937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121060681
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060681
product: methanethiol oxidase-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_040538671.1
SIO_010081: LOC121060681
subclass of: SO_0000673
so part of: LOC121060681
location: complement(join(286728..287636,288185..288303,288553..288645,288745..288866,289047..289125,289717..289901,290234..290416,290506..290626,291131..291316,292421..292533,292894..292947,293539..293694))
location: region:286728-293694:-1
so has part: feature:293539-293694:-1:exon
so has part: feature:292894-292947:-1:exon
so has part: feature:292421-292533:-1:exon
so has part: feature:291131-291316:-1:exon
so has part: feature:290506-290626:-1:exon
so has part: feature:290234-290416:-1:exon
so has part: feature:289717-289901:-1:exon
so has part: feature:289047-289125:-1:exon
so has part: feature:288745-288866:-1:exon
so has part: feature:288553-288645:-1:exon
so has part: feature:288185-288303:-1:exon
so has part: feature:286728-287636:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:293539-293694:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:292894-292947:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:292421-292533:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:291131-291316:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:290506-290626:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:290234-290416:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:289717-289901:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:289047-289125:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:288745-288866:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:288553-288645:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:288185-288303:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:286728-287636:-1:exon

LOC121060681
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060681
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: methanethiol oxidase-like
translation: MDRCRLQCYDYPVCPDVVKAPREEVAYVTCTYRETCIDQPDFLATIDLNPRSPYYCQVIHRLPMPNLKDELHSSGWSAGSVCFDNITTKRNKLILPCLISSRIYVVDVGSQCRAPKLCKMIEPVDVFWKCNKGYLSVPHTLPNGDILIANMGDPAGNGKGGFIVLDGETFELKGNWENECEVPPTGYDFWYQPCHNVLISSAGLVPKRAGRGFNPDDLKKGVFGRRLNVWNLSCRTLTQCFDLGEDSLPLSVKFLHNPNAAEGYVSCALSGIIYRFYKACCERDTWSVEEVIQIPAKDVTGWILPKMPAFTADMVISLDDKYLYLSNWLHGDIRQYEISKTCKPRLVGQVFVGGSILRGGPVTVCRDEELKCQPEPLVIKCKRVYGGPCKMQLSVDGKRLYVTNSFYSTWDKQFYPNVVREGSVMLQIDVDTEKGGLTVNKNFLVDFGKEPNGPCLAHAIRFPCGDSTSDILA
SIO_010081: LOC121060681
subclass of: SO_0000673
so part of: LOC121060681
location: complement(join(287474..287636,288185..288303,288553..288645,288745..288866,289047..289125,289717..289901,290234..290416,290506..290626,291131..291316,292421..292533,292894..292947,293539..293542))
location: region:287474-293542:-1
so has part: feature:293539-293542:-1:exon
so has part: feature:292894-292947:-1:exon
so has part: feature:292421-292533:-1:exon
so has part: feature:291131-291316:-1:exon
so has part: feature:290506-290626:-1:exon
so has part: feature:290234-290416:-1:exon
so has part: feature:289717-289901:-1:exon
so has part: feature:289047-289125:-1:exon
so has part: feature:288745-288866:-1:exon
so has part: feature:288553-288645:-1:exon
so has part: feature:288185-288303:-1:exon
so has part: feature:287474-287636:-1:exon

XP_040394605.1
type: Protein
SIO_000068: ncbiprotein

position:287474:-1
position: 287474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:293542:-1
position: 293542
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:293539-293542:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:292894-292947:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:292421-292533:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:291131-291316:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:290506-290626:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:290234-290416:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:289717-289901:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:289047-289125:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:288745-288866:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:288553-288645:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:288185-288303:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:287474-287636:-1:exon

LOC121060681
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060681
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: methanethiol oxidase-like
translation: MDRCRLQCYDYPVCPDVVKAPREEVAYVTCTYRETCIDQPDFLATIDLNPRSPYYCQVIHRLPMPNLKDELHSSGWSAGSVCFDNITTKRNKLILPCLISSRIYVVDVGSQCRAPKLCKMIEPVDVFWKCNKGYLSVPHTLPNGDILIANMGDPAGNGKGGFIVLDGETFELKGNWENECEVPPTGYDFWYQPCHNVLISSAGLVPKRAGRGFNPDDLKKGVFGRRLNVWNLSCRTLTQCFDLGEDSLPLSVKFLHNPNAAEGYVSCALSGIIYRFYKACCERDTWSVEEVIQIPAKDVTGWILPKMPAFTADMVISLDDKYLYLSNWLHGDIRQYEISKTCKPRLVGQVFVGGSILRGGPVTVCRDEELKCQPEPLVIKCKRVYGGPCKMQLSVDGKRLYVTNSFYSTWDKQFYPNVVREGSVMLQIDVDTEKGGLTVNKNFLVDFGKEPNGPCLAHAIRFPCGDSTSDILA
SIO_010081: LOC121060681
subclass of: SO_0000673
so part of: LOC121060681
location: complement(join(287474..287636,288185..288303,288553..288645,288745..288866,289047..289125,289717..289901,290234..290416,290506..290626,291131..291316,292421..292533,292894..292947,293539..293542))
location: region:287474-293542:-1
so has part: feature:293539-293542:-1:exon
so has part: feature:292894-292947:-1:exon
so has part: feature:292421-292533:-1:exon
so has part: feature:291131-291316:-1:exon
so has part: feature:290506-290626:-1:exon
so has part: feature:290234-290416:-1:exon
so has part: feature:289717-289901:-1:exon
so has part: feature:289047-289125:-1:exon
so has part: feature:288745-288866:-1:exon
so has part: feature:288553-288645:-1:exon
so has part: feature:288185-288303:-1:exon
so has part: feature:287474-287636:-1:exon

XP_040394607.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:293539-293542:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:292894-292947:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:292421-292533:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:291131-291316:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:290506-290626:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:290234-290416:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:289717-289901:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:289047-289125:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:288745-288866:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:288553-288645:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:288185-288303:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:287474-287636:-1:exon

LOC121060683
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: LOC121060683
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(296886..310905)
location: region:296886-310905:-1
so has part: feature:296886-310905:-1:exon
subclass of: SO_0000010

121060683
type: Gene
SIO_000068: ncbigene

position:296886:-1
position: 296886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:310905:-1
position: 310905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:296886-310905:-1:exon

LOC121060683
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060683
product: methanethiol oxidase-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 183 long SRA reads, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538676.1
SIO_010081: LOC121060683
subclass of: SO_0000673
so part of: LOC121060683
location: complement(join(296886..297593,298223..298341,299367..299459,299627..299748,300260..300338,301037..301215,301317..301499,301677..301797,303311..303496,304736..304848,305940..305993,310350..310439,310554..310897))
location: region:296886-310897:-1
so has part: feature:310554-310897:-1:exon
so has part: feature:310350-310439:-1:exon
so has part: feature:305940-305993:-1:exon
so has part: feature:304736-304848:-1:exon
so has part: feature:303311-303496:-1:exon
so has part: feature:301677-301797:-1:exon
so has part: feature:301317-301499:-1:exon
so has part: feature:301037-301215:-1:exon
so has part: feature:300260-300338:-1:exon
so has part: feature:299627-299748:-1:exon
so has part: feature:299367-299459:-1:exon
so has part: feature:298223-298341:-1:exon
so has part: feature:296886-297593:-1:exon

position:310897:-1
position: 310897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:310554-310897:-1:exon

position:310554:-1
position: 310554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:310350-310439:-1:exon

position:310350:-1
position: 310350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:310439:-1
position: 310439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:305940-305993:-1:exon

position:305940:-1
position: 305940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:305993:-1
position: 305993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:304736-304848:-1:exon

position:304736:-1
position: 304736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:304848:-1
position: 304848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:303311-303496:-1:exon

position:303311:-1
position: 303311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:303496:-1
position: 303496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:301677-301797:-1:exon

position:301677:-1
position: 301677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:301797:-1
position: 301797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:301317-301499:-1:exon

position:301317:-1
position: 301317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:301499:-1
position: 301499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:301037-301215:-1:exon

position:301037:-1
position: 301037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:301215:-1
position: 301215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:300260-300338:-1:exon

position:300260:-1
position: 300260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:300338:-1
position: 300338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:299627-299748:-1:exon

position:299627:-1
position: 299627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:299748:-1
position: 299748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:299367-299459:-1:exon

position:299367:-1
position: 299367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:299459:-1
position: 299459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:298223-298341:-1:exon

position:298223:-1
position: 298223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:298341:-1
position: 298341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:296886-297593:-1:exon

position:297593:-1
position: 297593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121060683
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060683
product: methanethiol oxidase-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 long SRA reads, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_040538677.1
SIO_010081: LOC121060683
subclass of: SO_0000673
so part of: LOC121060683
location: complement(join(296983..297593,298223..298341,299367..299459,299627..299748,300260..300338,301037..301215,301317..301499,301677..301797,303311..303496,304736..304848,305940..305993,309588..309688,310350..310439,310554..310896))
location: region:296983-310896:-1
so has part: feature:310554-310896:-1:exon
so has part: feature:310350-310439:-1:exon
so has part: feature:309588-309688:-1:exon
so has part: feature:305940-305993:-1:exon
so has part: feature:304736-304848:-1:exon
so has part: feature:303311-303496:-1:exon
so has part: feature:301677-301797:-1:exon
so has part: feature:301317-301499:-1:exon
so has part: feature:301037-301215:-1:exon
so has part: feature:300260-300338:-1:exon
so has part: feature:299627-299748:-1:exon
so has part: feature:299367-299459:-1:exon
so has part: feature:298223-298341:-1:exon
so has part: feature:296983-297593:-1:exon

position:296983:-1
position: 296983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:310896:-1
position: 310896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:310554-310896:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:310350-310439:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:309588-309688:-1:exon

position:309588:-1
position: 309588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:309688:-1
position: 309688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:305940-305993:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:304736-304848:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:303311-303496:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:301677-301797:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:301317-301499:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:301037-301215:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:300260-300338:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:299627-299748:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:299367-299459:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:298223-298341:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:296983-297593:-1:exon

LOC121060683
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060683
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: methanethiol oxidase-like isoform X1
translation: MAKCGACGPGYATPLDAMKGPREEILYLPCIYRNTGIEKPDYLATVDVDPKSPHYCQVIHRLPMPNLKDELHHSGWNACSSCFGDATKRRNRLILPSLISSRIYVVDVGTDSKAPRIHKIVEPVELFWKGNVANPHTSHCLGSGDILISCLGDPSGNGKGGFILLDGETFEVKGNWEKGEKVPPLGYDFWYQPRHNVLMSTEWGTPKVLADGFNPADVEKGHYGRHINVWDWNSRTYIQKIDLGKDSIPLEIRFLHNPDAAEGFVGCALSSTVHRFYKMEKGNWAAEKVIEVPSKKVQGWLLPDMPGLITDILISLDDRFLYFSNWLHGDIRQYDISNTHKPKLVGQVFLGGSIIKGGPVTVVEDKELQCQPEPFVIKGKRVPGGPQMIQLSLDGKRLYVTSSLYSGWDKQFYPDLVKEGSVMLQIDVDTERGGLKVNKNFLVDFGKEPDGPVLAHEIRYPGGDSTSDIWI
SIO_010081: LOC121060683
subclass of: SO_0000673
so part of: LOC121060683
location: complement(join(297431..297593,298223..298341,299367..299459,299627..299748,300260..300338,301037..301215,301317..301499,301677..301797,303311..303496,304736..304848,305940..305993,310350..310353))
location: region:297431-310353:-1
so has part: feature:310350-310353:-1:exon
so has part: feature:305940-305993:-1:exon
so has part: feature:304736-304848:-1:exon
so has part: feature:303311-303496:-1:exon
so has part: feature:301677-301797:-1:exon
so has part: feature:301317-301499:-1:exon
so has part: feature:301037-301215:-1:exon
so has part: feature:300260-300338:-1:exon
so has part: feature:299627-299748:-1:exon
so has part: feature:299367-299459:-1:exon
so has part: feature:298223-298341:-1:exon
so has part: feature:297431-297593:-1:exon

XP_040394610.1
type: Protein
SIO_000068: ncbiprotein

position:297431:-1
position: 297431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:310353:-1
position: 310353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:310350-310353:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:305940-305993:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:304736-304848:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:303311-303496:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:301677-301797:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:301317-301499:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:301037-301215:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:300260-300338:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:299627-299748:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:299367-299459:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:298223-298341:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:297431-297593:-1:exon

LOC121060683
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060683
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: methanethiol oxidase-like isoform X2
translation: MKGPREEILYLPCIYRNTGIEKPDYLATVDVDPKSPHYCQVIHRLPMPNLKDELHHSGWNACSSCFGDATKRRNRLILPSLISSRIYVVDVGTDSKAPRIHKIVEPVELFWKGNVANPHTSHCLGSGDILISCLGDPSGNGKGGFILLDGETFEVKGNWEKGEKVPPLGYDFWYQPRHNVLMSTEWGTPKVLADGFNPADVEKGHYGRHINVWDWNSRTYIQKIDLGKDSIPLEIRFLHNPDAAEGFVGCALSSTVHRFYKMEKGNWAAEKVIEVPSKKVQGWLLPDMPGLITDILISLDDRFLYFSNWLHGDIRQYDISNTHKPKLVGQVFLGGSIIKGGPVTVVEDKELQCQPEPFVIKGKRVPGGPQMIQLSLDGKRLYVTSSLYSGWDKQFYPDLVKEGSVMLQIDVDTERGGLKVNKNFLVDFGKEPDGPVLAHEIRYPGGDSTSDIWI
SIO_010081: LOC121060683
subclass of: SO_0000673
so part of: LOC121060683
location: complement(join(297431..297593,298223..298341,299367..299459,299627..299748,300260..300338,301037..301215,301317..301499,301677..301797,303311..303496,304736..304848,305940..305946))
location: region:297431-305946:-1
so has part: feature:305940-305946:-1:exon
so has part: feature:304736-304848:-1:exon
so has part: feature:303311-303496:-1:exon
so has part: feature:301677-301797:-1:exon
so has part: feature:301317-301499:-1:exon
so has part: feature:301037-301215:-1:exon
so has part: feature:300260-300338:-1:exon
so has part: feature:299627-299748:-1:exon
so has part: feature:299367-299459:-1:exon
so has part: feature:298223-298341:-1:exon
so has part: feature:297431-297593:-1:exon

XP_040394611.1
type: Protein
SIO_000068: ncbiprotein

position:305946:-1
position: 305946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:305940-305946:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:304736-304848:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:303311-303496:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:301677-301797:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:301317-301499:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:301037-301215:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:300260-300338:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:299627-299748:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:299367-299459:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:298223-298341:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:297431-297593:-1:exon

LOC121060683
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060683
product: methanethiol oxidase-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_040538678.1
SIO_010081: LOC121060683
subclass of: SO_0000673
so part of: LOC121060683
location: complement(join(298223..298341,299180..299230,299367..299459,299627..299748,300260..300338,301037..301215,301317..301499,301677..301797,303311..303496,304736..304848,305940..305993,310350..310439,310554..310905))
location: region:298223-310905:-1
so has part: feature:310554-310905:-1:exon
so has part: feature:310350-310439:-1:exon
so has part: feature:305940-305993:-1:exon
so has part: feature:304736-304848:-1:exon
so has part: feature:303311-303496:-1:exon
so has part: feature:301677-301797:-1:exon
so has part: feature:301317-301499:-1:exon
so has part: feature:301037-301215:-1:exon
so has part: feature:300260-300338:-1:exon
so has part: feature:299627-299748:-1:exon
so has part: feature:299367-299459:-1:exon
so has part: feature:299180-299230:-1:exon
so has part: feature:298223-298341:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:310554-310905:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:310350-310439:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:305940-305993:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:304736-304848:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:303311-303496:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:301677-301797:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:301317-301499:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:301037-301215:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:300260-300338:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:299627-299748:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:299367-299459:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:299180-299230:-1:exon

position:299180:-1
position: 299180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:299230:-1
position: 299230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:298223-298341:-1:exon

LOC121060683
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060683
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: methanethiol oxidase-like isoform X3
translation: MAKCGACGPGYATPLDAMKGPREEILYLPCIYRNTGIEKPDYLATVDVDPKSPHYCQVIHRLPMPNLKDELHHSGWNACSSCFGDATKRRNRLILPSLISSRIYVVDVGTDSKAPRIHKIVEPVELFWKGNVANPHTSHCLGSGDILISCLGDPSGNGKGGFILLDGETFEVKGNWEKGEKVPPLGYDFWYQPRHNVLMSTEWGTPKVLADGFNPADVEKGHYGRHINVWDWNSRTYIQKIDLGKDSIPLEIRFLHNPDAAEGFVGCALSSTVHRFYKMEKGNWAAEKVIEVPSKKVQGWLLPDMPGLITDILISLDDRFLYFSNWLHGDIRQYDISNTHKPKLVGQVFLGGSIIKGGPVTVVEDKELQCQPEPFVIKPGLQVSHFSMDWS
SIO_010081: LOC121060683
subclass of: SO_0000673
so part of: LOC121060683
location: complement(join(299189..299230,299367..299459,299627..299748,300260..300338,301037..301215,301317..301499,301677..301797,303311..303496,304736..304848,305940..305993,310350..310353))
location: region:299189-310353:-1
so has part: feature:310350-310353:-1:exon
so has part: feature:305940-305993:-1:exon
so has part: feature:304736-304848:-1:exon
so has part: feature:303311-303496:-1:exon
so has part: feature:301677-301797:-1:exon
so has part: feature:301317-301499:-1:exon
so has part: feature:301037-301215:-1:exon
so has part: feature:300260-300338:-1:exon
so has part: feature:299627-299748:-1:exon
so has part: feature:299367-299459:-1:exon
so has part: feature:299189-299230:-1:exon

XP_040394612.1
type: Protein
SIO_000068: ncbiprotein

position:299189:-1
position: 299189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:310350-310353:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:305940-305993:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:304736-304848:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:303311-303496:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:301677-301797:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:301317-301499:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:301037-301215:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:300260-300338:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:299627-299748:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:299367-299459:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:299189-299230:-1:exon

POGZ
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: POGZ
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 318475..354567
location: region:318475-354567:1
so has part: feature:318475-354567:1:exon
subclass of: SO_0000010

121060661
type: Gene
SIO_000068: ncbigene

position:318475:1
position: 318475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:354567:1
position: 354567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:318475-354567:1:exon

POGZ
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: POGZ
product: pogo transposable element derived with ZNF domain, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_040538618.1
SIO_010081: POGZ
subclass of: SO_0000673
so part of: POGZ
location: join(318475..318802,320545..320796,329515..329639,340085..340260,341232..341340,342269..342562,343332..343529,343877..343986,344384..344718,345517..345671,346176..346276,347167..347313,348209..348343,348854..349026,349522..349662,350315..350374,350700..350812,351588..351612,351735..354567)
location: region:318475-354567:1
so has part: feature:318475-318802:1:exon
so has part: feature:320545-320796:1:exon
so has part: feature:329515-329639:1:exon
so has part: feature:340085-340260:1:exon
so has part: feature:341232-341340:1:exon
so has part: feature:342269-342562:1:exon
so has part: feature:343332-343529:1:exon
so has part: feature:343877-343986:1:exon
so has part: feature:344384-344718:1:exon
so has part: feature:345517-345671:1:exon
so has part: feature:346176-346276:1:exon
so has part: feature:347167-347313:1:exon
so has part: feature:348209-348343:1:exon
so has part: feature:348854-349026:1:exon
so has part: feature:349522-349662:1:exon
so has part: feature:350315-350374:1:exon
so has part: feature:350700-350812:1:exon
so has part: feature:351588-351612:1:exon
so has part: feature:351735-354567:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:318475-318802:1:exon

position:318802:1
position: 318802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:320545-320796:1:exon

position:320545:1
position: 320545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:320796:1
position: 320796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:329515-329639:1:exon

position:329515:1
position: 329515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:329639:1
position: 329639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:340085-340260:1:exon

position:340085:1
position: 340085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:340260:1
position: 340260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:341232-341340:1:exon

position:341232:1
position: 341232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:341340:1
position: 341340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:342269-342562:1:exon

position:342269:1
position: 342269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:342562:1
position: 342562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:343332-343529:1:exon

position:343332:1
position: 343332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:343529:1
position: 343529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:343877-343986:1:exon

position:343877:1
position: 343877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:343986:1
position: 343986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:344384-344718:1:exon

position:344384:1
position: 344384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:344718:1
position: 344718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:345517-345671:1:exon

position:345517:1
position: 345517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:345671:1
position: 345671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:346176-346276:1:exon

position:346176:1
position: 346176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:346276:1
position: 346276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:347167-347313:1:exon

position:347167:1
position: 347167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:347313:1
position: 347313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:348209-348343:1:exon

position:348209:1
position: 348209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:348343:1
position: 348343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:348854-349026:1:exon

position:348854:1
position: 348854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:349026:1
position: 349026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:349522-349662:1:exon

position:349522:1
position: 349522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:349662:1
position: 349662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:350315-350374:1:exon

position:350315:1
position: 350315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:350374:1
position: 350374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:350700-350812:1:exon

position:350700:1
position: 350700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:350812:1
position: 350812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:351588-351612:1:exon

position:351588:1
position: 351588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:351612:1
position: 351612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:351735-354567:1:exon

position:351735:1
position: 351735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

POGZ
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: POGZ
product: pogo transposable element derived with ZNF domain, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_040538617.1
SIO_010081: POGZ
subclass of: SO_0000673
so part of: POGZ
location: join(318475..318802,329515..329639,340085..340260,341232..341340,342269..342562,343332..343529,343877..343986,344384..344718,345517..345671,346176..346276,347167..347313,348209..348343,348854..349026,349522..349662,350315..350374,350700..350812,351588..351612,351735..354567)
location: region:318475-354567:1
so has part: feature:318475-318802:1:exon
so has part: feature:329515-329639:1:exon
so has part: feature:340085-340260:1:exon
so has part: feature:341232-341340:1:exon
so has part: feature:342269-342562:1:exon
so has part: feature:343332-343529:1:exon
so has part: feature:343877-343986:1:exon
so has part: feature:344384-344718:1:exon
so has part: feature:345517-345671:1:exon
so has part: feature:346176-346276:1:exon
so has part: feature:347167-347313:1:exon
so has part: feature:348209-348343:1:exon
so has part: feature:348854-349026:1:exon
so has part: feature:349522-349662:1:exon
so has part: feature:350315-350374:1:exon
so has part: feature:350700-350812:1:exon
so has part: feature:351588-351612:1:exon
so has part: feature:351735-354567:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:318475-318802:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:329515-329639:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:340085-340260:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:341232-341340:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:342269-342562:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:343332-343529:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:343877-343986:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:344384-344718:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:345517-345671:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:346176-346276:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:347167-347313:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:348209-348343:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:348854-349026:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:349522-349662:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:350315-350374:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:350700-350812:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:351588-351612:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:351735-354567:1:exon

POGZ
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: POGZ
product: pogo transposable element derived with ZNF domain, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_040538621.1
SIO_010081: POGZ
subclass of: SO_0000673
so part of: POGZ
location: join(318481..318802,329515..329639,340085..340260,341232..341340,342269..342448,343332..343529,343877..343986,344384..344718,345517..345671,346176..346276,347167..347313,348209..348343,348854..349026,349522..349662,350315..350374,350700..350812,351588..351612,351735..354567)
location: region:318481-354567:1
so has part: feature:318481-318802:1:exon
so has part: feature:329515-329639:1:exon
so has part: feature:340085-340260:1:exon
so has part: feature:341232-341340:1:exon
so has part: feature:342269-342448:1:exon
so has part: feature:343332-343529:1:exon
so has part: feature:343877-343986:1:exon
so has part: feature:344384-344718:1:exon
so has part: feature:345517-345671:1:exon
so has part: feature:346176-346276:1:exon
so has part: feature:347167-347313:1:exon
so has part: feature:348209-348343:1:exon
so has part: feature:348854-349026:1:exon
so has part: feature:349522-349662:1:exon
so has part: feature:350315-350374:1:exon
so has part: feature:350700-350812:1:exon
so has part: feature:351588-351612:1:exon
so has part: feature:351735-354567:1:exon

position:318481:1
position: 318481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:318481-318802:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:329515-329639:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:340085-340260:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:341232-341340:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:342269-342448:1:exon

position:342448:1
position: 342448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:343332-343529:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:343877-343986:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:344384-344718:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:345517-345671:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:346176-346276:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:347167-347313:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:348209-348343:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:348854-349026:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:349522-349662:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:350315-350374:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:350700-350812:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:351588-351612:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:351735-354567:1:exon

POGZ
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: POGZ
product: pogo transposable element derived with ZNF domain, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_040538619.1
SIO_010081: POGZ
subclass of: SO_0000673
so part of: POGZ
location: join(319535..320796,329515..329639,340085..340260,341232..341340,342269..342562,343332..343529,343877..343986,344384..344718,345517..345671,346176..346276,347167..347313,348212..348343,348854..349026,349522..349662,350315..350374,350700..350812,351588..351612,351735..354567)
location: region:319535-354567:1
so has part: feature:319535-320796:1:exon
so has part: feature:329515-329639:1:exon
so has part: feature:340085-340260:1:exon
so has part: feature:341232-341340:1:exon
so has part: feature:342269-342562:1:exon
so has part: feature:343332-343529:1:exon
so has part: feature:343877-343986:1:exon
so has part: feature:344384-344718:1:exon
so has part: feature:345517-345671:1:exon
so has part: feature:346176-346276:1:exon
so has part: feature:347167-347313:1:exon
so has part: feature:348212-348343:1:exon
so has part: feature:348854-349026:1:exon
so has part: feature:349522-349662:1:exon
so has part: feature:350315-350374:1:exon
so has part: feature:350700-350812:1:exon
so has part: feature:351588-351612:1:exon
so has part: feature:351735-354567:1:exon

position:319535:1
position: 319535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:319535-320796:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:329515-329639:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:340085-340260:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:341232-341340:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:342269-342562:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:343332-343529:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:343877-343986:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:344384-344718:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:345517-345671:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:346176-346276:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:347167-347313:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:348212-348343:1:exon

position:348212:1
position: 348212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:348854-349026:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:349522-349662:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:350315-350374:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:350700-350812:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:351588-351612:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:351735-354567:1:exon

POGZ
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: POGZ
product: pogo transposable element derived with ZNF domain, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_040538620.1
SIO_010081: POGZ
subclass of: SO_0000673
so part of: POGZ
location: join(319544..320796,329515..329639,340085..340260,341232..341340,342269..342448,343332..343529,343877..343986,344384..344718,345517..345671,346176..346276,347167..347313,348209..348343,348854..349026,349522..349662,350315..350374,350700..350812,351588..351612,351735..354567)
location: region:319544-354567:1
so has part: feature:319544-320796:1:exon
so has part: feature:329515-329639:1:exon
so has part: feature:340085-340260:1:exon
so has part: feature:341232-341340:1:exon
so has part: feature:342269-342448:1:exon
so has part: feature:343332-343529:1:exon
so has part: feature:343877-343986:1:exon
so has part: feature:344384-344718:1:exon
so has part: feature:345517-345671:1:exon
so has part: feature:346176-346276:1:exon
so has part: feature:347167-347313:1:exon
so has part: feature:348209-348343:1:exon
so has part: feature:348854-349026:1:exon
so has part: feature:349522-349662:1:exon
so has part: feature:350315-350374:1:exon
so has part: feature:350700-350812:1:exon
so has part: feature:351588-351612:1:exon
so has part: feature:351735-354567:1:exon

position:319544:1
position: 319544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:319544-320796:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:329515-329639:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:340085-340260:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:341232-341340:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:342269-342448:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:343332-343529:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:343877-343986:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:344384-344718:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:345517-345671:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:346176-346276:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:347167-347313:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:348209-348343:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:348854-349026:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:349522-349662:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:350315-350374:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:350700-350812:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:351588-351612:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:351735-354567:1:exon

POGZ
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: POGZ
product: pogo transposable element derived with ZNF domain, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_040538622.1
SIO_010081: POGZ
subclass of: SO_0000673
so part of: POGZ
location: join(329513..329639,334939..335176,340085..340260,341232..341340,342269..342562,343332..343529,343877..343986,344384..344718,345517..345671,346176..346276,347167..347313,348209..348343,348854..349026,349522..349662,350315..350374,350700..350812,351588..351612,351735..354567)
location: region:329513-354567:1
so has part: feature:329513-329639:1:exon
so has part: feature:334939-335176:1:exon
so has part: feature:340085-340260:1:exon
so has part: feature:341232-341340:1:exon
so has part: feature:342269-342562:1:exon
so has part: feature:343332-343529:1:exon
so has part: feature:343877-343986:1:exon
so has part: feature:344384-344718:1:exon
so has part: feature:345517-345671:1:exon
so has part: feature:346176-346276:1:exon
so has part: feature:347167-347313:1:exon
so has part: feature:348209-348343:1:exon
so has part: feature:348854-349026:1:exon
so has part: feature:349522-349662:1:exon
so has part: feature:350315-350374:1:exon
so has part: feature:350700-350812:1:exon
so has part: feature:351588-351612:1:exon
so has part: feature:351735-354567:1:exon

position:329513:1
position: 329513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:329513-329639:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:334939-335176:1:exon

position:334939:1
position: 334939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:335176:1
position: 335176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:340085-340260:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:341232-341340:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:342269-342562:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:343332-343529:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:343877-343986:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:344384-344718:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:345517-345671:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:346176-346276:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:347167-347313:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:348209-348343:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:348854-349026:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:349522-349662:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:350315-350374:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:350700-350812:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:351588-351612:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:351735-354567:1:exon

POGZ
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: POGZ
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pogo transposable element with ZNF domain isoform X1
translation: MADTDLFMECEEEELEPWQKISDVIEDSVVEDYNSVDKTATAGNPLVQQGGQPLILTQNPASGLGTMVTQPVLRPVQIMQNANHVTNSPVTSQPIFITTQGFPVRNVRPVQNTMNQVGIVLNVQQGQTVRPITLVPAPGTQFVKPTVGVPQVFSQMAQVRPGTTMPVRPTTNTFTTVIPATLTIRSTVPQSQAQQQSKSTPSTSTTPTSTQPTTLGQLTVQQPGQSSQATNPKLVSIASFVTVKRPGVTGENSNEVAKLVNTLNTIPSLGQSPGPLVVSNSSPVHGSQRSSVSESSSSLKVSSSPIPTFDLQDGGRKVCPRCDAQFRVTEALRGHMCYCCPEMVEFLKKRKSLDSEPNIQSAKPPSPEKTTAVASPPSSTPIPALSPPAKAPEPSENVVDSSQSKLIMLVDDFYYGRDGGKVSQLLNFPKVPTSFRCPHCTKRLKNNIRFMNHMKHHVELDQQNGEVDVHTICQHCYRQFSTPFQLQCHLENVHSPYESTTKCKICEWAFESEPMFLQHMKDTHKPGEMPYVCQVCQYRSSLYSEVDSHFRMIHEDTRHLLCPYCLKVFKNGNAFQQHFMRHQKKSVYHCNKCRLQFLFAKDKIEHKLQHHKTFRKPKQLEGLKPGTKVTIRASRGQPRTVPISSNDMLQGTGQDITPLSSSTDPQPIFLYPPVQRNVQKRAVKKMSVLGRQTCLECSFEIPDFPNHFPTYVHCSQCRYSTCCSRAYANHMINNHVPRKSPKYLALFKNYTACGVKLSCSSCLFVTSEGDAMAKHLVFNPSHEFSNIIFRGPSWISHSRHVQPQDKSMKNTCSAYSPSKAATVKTKSTLPAKDDLEPELTPAAYNRPLVCQEEECLNIDAQEDEQPTKEPEPASKKEQLSVKKLRVVLFALCCNTEQAAEHFRNPQRRIKRWLRRFQAFQEENLASLSEGKYLSLEAEEKLAEWVLTQREQQLPVNEETLFQKATKIGRSLEGGFKISYEWAVRFMLRHNLSTHTRRAVAHPLPKDVEDNASCFIEFVQRQIHTQDLPLSMIAAIDEISLFLDVEVLSSDDRKENALQTVGTGDPWCDVVLTILADGSVLPTLVFYRGHVQQPANVPESIMLEAKENGYSDDEVMELWATRVWQKHTECQNSKGMLVLDCHRTHLSEEVLSLLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNFLHKKWKEQAKEMADSTCDSDILLQLVLCWLAEVLEVISDSPELVQQSFLVASVLPGPDGTANSPTRNADMQEELIASLEEQLKLNGEQQQQAATEVQDRTQAEESADPEILHQLFEGESETESFYGFEDADLDLMEI
SIO_010081: POGZ
subclass of: SO_0000673
so part of: POGZ
location: join(329516..329639,340085..340260,341232..341340,342269..342562,343332..343529,343877..343986,344384..344718,345517..345671,346176..346276,347167..347313,348209..348343,348854..349026,349522..349662,350315..350374,350700..350812,351588..351612,351735..353307)
location: region:329516-353307:1
so has part: feature:329516-329639:1:exon
so has part: feature:340085-340260:1:exon
so has part: feature:341232-341340:1:exon
so has part: feature:342269-342562:1:exon
so has part: feature:343332-343529:1:exon
so has part: feature:343877-343986:1:exon
so has part: feature:344384-344718:1:exon
so has part: feature:345517-345671:1:exon
so has part: feature:346176-346276:1:exon
so has part: feature:347167-347313:1:exon
so has part: feature:348209-348343:1:exon
so has part: feature:348854-349026:1:exon
so has part: feature:349522-349662:1:exon
so has part: feature:350315-350374:1:exon
so has part: feature:350700-350812:1:exon
so has part: feature:351588-351612:1:exon
so has part: feature:351735-353307:1:exon

XP_040394551.1
type: Protein
SIO_000068: ncbiprotein

position:329516:1
position: 329516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:353307:1
position: 353307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:329516-329639:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:340085-340260:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:341232-341340:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:342269-342562:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:343332-343529:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:343877-343986:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:344384-344718:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:345517-345671:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:346176-346276:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:347167-347313:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:348209-348343:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:348854-349026:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:349522-349662:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:350315-350374:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:350700-350812:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:351588-351612:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:351735-353307:1:exon

POGZ
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: POGZ
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pogo transposable element with ZNF domain isoform X1
translation: MADTDLFMECEEEELEPWQKISDVIEDSVVEDYNSVDKTATAGNPLVQQGGQPLILTQNPASGLGTMVTQPVLRPVQIMQNANHVTNSPVTSQPIFITTQGFPVRNVRPVQNTMNQVGIVLNVQQGQTVRPITLVPAPGTQFVKPTVGVPQVFSQMAQVRPGTTMPVRPTTNTFTTVIPATLTIRSTVPQSQAQQQSKSTPSTSTTPTSTQPTTLGQLTVQQPGQSSQATNPKLVSIASFVTVKRPGVTGENSNEVAKLVNTLNTIPSLGQSPGPLVVSNSSPVHGSQRSSVSESSSSLKVSSSPIPTFDLQDGGRKVCPRCDAQFRVTEALRGHMCYCCPEMVEFLKKRKSLDSEPNIQSAKPPSPEKTTAVASPPSSTPIPALSPPAKAPEPSENVVDSSQSKLIMLVDDFYYGRDGGKVSQLLNFPKVPTSFRCPHCTKRLKNNIRFMNHMKHHVELDQQNGEVDVHTICQHCYRQFSTPFQLQCHLENVHSPYESTTKCKICEWAFESEPMFLQHMKDTHKPGEMPYVCQVCQYRSSLYSEVDSHFRMIHEDTRHLLCPYCLKVFKNGNAFQQHFMRHQKKSVYHCNKCRLQFLFAKDKIEHKLQHHKTFRKPKQLEGLKPGTKVTIRASRGQPRTVPISSNDMLQGTGQDITPLSSSTDPQPIFLYPPVQRNVQKRAVKKMSVLGRQTCLECSFEIPDFPNHFPTYVHCSQCRYSTCCSRAYANHMINNHVPRKSPKYLALFKNYTACGVKLSCSSCLFVTSEGDAMAKHLVFNPSHEFSNIIFRGPSWISHSRHVQPQDKSMKNTCSAYSPSKAATVKTKSTLPAKDDLEPELTPAAYNRPLVCQEEECLNIDAQEDEQPTKEPEPASKKEQLSVKKLRVVLFALCCNTEQAAEHFRNPQRRIKRWLRRFQAFQEENLASLSEGKYLSLEAEEKLAEWVLTQREQQLPVNEETLFQKATKIGRSLEGGFKISYEWAVRFMLRHNLSTHTRRAVAHPLPKDVEDNASCFIEFVQRQIHTQDLPLSMIAAIDEISLFLDVEVLSSDDRKENALQTVGTGDPWCDVVLTILADGSVLPTLVFYRGHVQQPANVPESIMLEAKENGYSDDEVMELWATRVWQKHTECQNSKGMLVLDCHRTHLSEEVLSLLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNFLHKKWKEQAKEMADSTCDSDILLQLVLCWLAEVLEVISDSPELVQQSFLVASVLPGPDGTANSPTRNADMQEELIASLEEQLKLNGEQQQQAATEVQDRTQAEESADPEILHQLFEGESETESFYGFEDADLDLMEI
SIO_010081: POGZ
subclass of: SO_0000673
so part of: POGZ
location: join(329516..329639,340085..340260,341232..341340,342269..342562,343332..343529,343877..343986,344384..344718,345517..345671,346176..346276,347167..347313,348209..348343,348854..349026,349522..349662,350315..350374,350700..350812,351588..351612,351735..353307)
location: region:329516-353307:1
so has part: feature:329516-329639:1:exon
so has part: feature:340085-340260:1:exon
so has part: feature:341232-341340:1:exon
so has part: feature:342269-342562:1:exon
so has part: feature:343332-343529:1:exon
so has part: feature:343877-343986:1:exon
so has part: feature:344384-344718:1:exon
so has part: feature:345517-345671:1:exon
so has part: feature:346176-346276:1:exon
so has part: feature:347167-347313:1:exon
so has part: feature:348209-348343:1:exon
so has part: feature:348854-349026:1:exon
so has part: feature:349522-349662:1:exon
so has part: feature:350315-350374:1:exon
so has part: feature:350700-350812:1:exon
so has part: feature:351588-351612:1:exon
so has part: feature:351735-353307:1:exon

XP_040394552.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:329516-329639:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:340085-340260:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:341232-341340:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:342269-342562:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:343332-343529:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:343877-343986:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:344384-344718:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:345517-345671:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:346176-346276:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:347167-347313:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:348209-348343:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:348854-349026:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:349522-349662:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:350315-350374:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:350700-350812:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:351588-351612:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:351735-353307:1:exon

POGZ
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: POGZ
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pogo transposable element with ZNF domain isoform X2
translation: MADTDLFMECEEEELEPWQKISDVIEDSVVEDYNSVDKTATAGNPLVQQGGQPLILTQNPASGLGTMVTQPVLRPVQIMQNANHVTNSPVTSQPIFITTQGFPVRNVRPVQNTMNQVGIVLNVQQGQTVRPITLVPAPGTQFVKPTVGVPQVFSQMAQVRPGTTMPVRPTTNTFTTVIPATLTIRSTVPQSQAQQQSKSTPSTSTTPTSTQPTTLGQLTVQQPGQSSQATNPKLVSIASFVTVKRPGVTGENSNEVAKLVNTLNTIPSLGQSPGPLVVSNSSPVHGSQRSSVSESSSSLKVSSSPIPTFDLQDGGRKVCPRCDAQFRVTEALRGHMCYCCPEMVEFLKKRKSLDSEPNIQSAKPPSPEKTTAVASPPSSTPIPALSPPAKAPEPSENVVDSSQSKLIMLVDDFYYGRDGGKVSQLLNFPKVPTSFRCPHCTKRLKNNIRFMNHMKHHVELDQQNGEVDVHTICQHCYRQFSTPFQLQCHLENVHSPYESTTKCKICEWAFESEPMFLQHMKDTHKPGEMPYVCQVCQYRSSLYSEVDSHFRMIHEDTRHLLCPYCLKVFKNGNAFQQHFMRHQKSVYHCNKCRLQFLFAKDKIEHKLQHHKTFRKPKQLEGLKPGTKVTIRASRGQPRTVPISSNDMLQGTGQDITPLSSSTDPQPIFLYPPVQRNVQKRAVKKMSVLGRQTCLECSFEIPDFPNHFPTYVHCSQCRYSTCCSRAYANHMINNHVPRKSPKYLALFKNYTACGVKLSCSSCLFVTSEGDAMAKHLVFNPSHEFSNIIFRGPSWISHSRHVQPQDKSMKNTCSAYSPSKAATVKTKSTLPAKDDLEPELTPAAYNRPLVCQEEECLNIDAQEDEQPTKEPEPASKKEQLSVKKLRVVLFALCCNTEQAAEHFRNPQRRIKRWLRRFQAFQEENLASLSEGKYLSLEAEEKLAEWVLTQREQQLPVNEETLFQKATKIGRSLEGGFKISYEWAVRFMLRHNLSTHTRRAVAHPLPKDVEDNASCFIEFVQRQIHTQDLPLSMIAAIDEISLFLDVEVLSSDDRKENALQTVGTGDPWCDVVLTILADGSVLPTLVFYRGHVQQPANVPESIMLEAKENGYSDDEVMELWATRVWQKHTECQNSKGMLVLDCHRTHLSEEVLSLLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNFLHKKWKEQAKEMADSTCDSDILLQLVLCWLAEVLEVISDSPELVQQSFLVASVLPGPDGTANSPTRNADMQEELIASLEEQLKLNGEQQQQAATEVQDRTQAEESADPEILHQLFEGESETESFYGFEDADLDLMEI
SIO_010081: POGZ
subclass of: SO_0000673
so part of: POGZ
location: join(329516..329639,340085..340260,341232..341340,342269..342562,343332..343529,343877..343986,344384..344718,345517..345671,346176..346276,347167..347313,348212..348343,348854..349026,349522..349662,350315..350374,350700..350812,351588..351612,351735..353307)
location: region:329516-353307:1
so has part: feature:329516-329639:1:exon
so has part: feature:340085-340260:1:exon
so has part: feature:341232-341340:1:exon
so has part: feature:342269-342562:1:exon
so has part: feature:343332-343529:1:exon
so has part: feature:343877-343986:1:exon
so has part: feature:344384-344718:1:exon
so has part: feature:345517-345671:1:exon
so has part: feature:346176-346276:1:exon
so has part: feature:347167-347313:1:exon
so has part: feature:348212-348343:1:exon
so has part: feature:348854-349026:1:exon
so has part: feature:349522-349662:1:exon
so has part: feature:350315-350374:1:exon
so has part: feature:350700-350812:1:exon
so has part: feature:351588-351612:1:exon
so has part: feature:351735-353307:1:exon

XP_040394553.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:329516-329639:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:340085-340260:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:341232-341340:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:342269-342562:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:343332-343529:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:343877-343986:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:344384-344718:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:345517-345671:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:346176-346276:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:347167-347313:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:348212-348343:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:348854-349026:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:349522-349662:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:350315-350374:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:350700-350812:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:351588-351612:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:351735-353307:1:exon

POGZ
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: POGZ
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pogo transposable element with ZNF domain isoform X3
translation: MADTDLFMECEEEELEPWQKISDVIEDSVVEDYNSVDKTATAGNPLVQQGGQPLILTQNPASGLGTMVTQPVLRPVQIMQNANHVTNSPVTSQPIFITTQGFPVRNVRPVQNTMNQVGIVLNVQQGQTVRPITLVPAPGTQFVKPTVGVPQVFSQMAQVRPGTTMPVRPTTNTFTTVIPATLTIRSTVPQSQAQQQMSIASFVTVKRPGVTGENSNEVAKLVNTLNTIPSLGQSPGPLVVSNSSPVHGSQRSSVSESSSSLKVSSSPIPTFDLQDGGRKVCPRCDAQFRVTEALRGHMCYCCPEMVEFLKKRKSLDSEPNIQSAKPPSPEKTTAVASPPSSTPIPALSPPAKAPEPSENVVDSSQSKLIMLVDDFYYGRDGGKVSQLLNFPKVPTSFRCPHCTKRLKNNIRFMNHMKHHVELDQQNGEVDVHTICQHCYRQFSTPFQLQCHLENVHSPYESTTKCKICEWAFESEPMFLQHMKDTHKPGEMPYVCQVCQYRSSLYSEVDSHFRMIHEDTRHLLCPYCLKVFKNGNAFQQHFMRHQKKSVYHCNKCRLQFLFAKDKIEHKLQHHKTFRKPKQLEGLKPGTKVTIRASRGQPRTVPISSNDMLQGTGQDITPLSSSTDPQPIFLYPPVQRNVQKRAVKKMSVLGRQTCLECSFEIPDFPNHFPTYVHCSQCRYSTCCSRAYANHMINNHVPRKSPKYLALFKNYTACGVKLSCSSCLFVTSEGDAMAKHLVFNPSHEFSNIIFRGPSWISHSRHVQPQDKSMKNTCSAYSPSKAATVKTKSTLPAKDDLEPELTPAAYNRPLVCQEEECLNIDAQEDEQPTKEPEPASKKEQLSVKKLRVVLFALCCNTEQAAEHFRNPQRRIKRWLRRFQAFQEENLASLSEGKYLSLEAEEKLAEWVLTQREQQLPVNEETLFQKATKIGRSLEGGFKISYEWAVRFMLRHNLSTHTRRAVAHPLPKDVEDNASCFIEFVQRQIHTQDLPLSMIAAIDEISLFLDVEVLSSDDRKENALQTVGTGDPWCDVVLTILADGSVLPTLVFYRGHVQQPANVPESIMLEAKENGYSDDEVMELWATRVWQKHTECQNSKGMLVLDCHRTHLSEEVLSLLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNFLHKKWKEQAKEMADSTCDSDILLQLVLCWLAEVLEVISDSPELVQQSFLVASVLPGPDGTANSPTRNADMQEELIASLEEQLKLNGEQQQQAATEVQDRTQAEESADPEILHQLFEGESETESFYGFEDADLDLMEI
SIO_010081: POGZ
subclass of: SO_0000673
so part of: POGZ
location: join(329516..329639,340085..340260,341232..341340,342269..342448,343332..343529,343877..343986,344384..344718,345517..345671,346176..346276,347167..347313,348209..348343,348854..349026,349522..349662,350315..350374,350700..350812,351588..351612,351735..353307)
location: region:329516-353307:1
so has part: feature:329516-329639:1:exon
so has part: feature:340085-340260:1:exon
so has part: feature:341232-341340:1:exon
so has part: feature:342269-342448:1:exon
so has part: feature:343332-343529:1:exon
so has part: feature:343877-343986:1:exon
so has part: feature:344384-344718:1:exon
so has part: feature:345517-345671:1:exon
so has part: feature:346176-346276:1:exon
so has part: feature:347167-347313:1:exon
so has part: feature:348209-348343:1:exon
so has part: feature:348854-349026:1:exon
so has part: feature:349522-349662:1:exon
so has part: feature:350315-350374:1:exon
so has part: feature:350700-350812:1:exon
so has part: feature:351588-351612:1:exon
so has part: feature:351735-353307:1:exon

XP_040394554.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:329516-329639:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:340085-340260:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:341232-341340:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:342269-342448:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:343332-343529:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:343877-343986:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:344384-344718:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:345517-345671:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:346176-346276:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:347167-347313:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:348209-348343:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:348854-349026:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:349522-349662:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:350315-350374:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:350700-350812:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:351588-351612:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:351735-353307:1:exon

POGZ
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: POGZ
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pogo transposable element with ZNF domain isoform X3
translation: MADTDLFMECEEEELEPWQKISDVIEDSVVEDYNSVDKTATAGNPLVQQGGQPLILTQNPASGLGTMVTQPVLRPVQIMQNANHVTNSPVTSQPIFITTQGFPVRNVRPVQNTMNQVGIVLNVQQGQTVRPITLVPAPGTQFVKPTVGVPQVFSQMAQVRPGTTMPVRPTTNTFTTVIPATLTIRSTVPQSQAQQQMSIASFVTVKRPGVTGENSNEVAKLVNTLNTIPSLGQSPGPLVVSNSSPVHGSQRSSVSESSSSLKVSSSPIPTFDLQDGGRKVCPRCDAQFRVTEALRGHMCYCCPEMVEFLKKRKSLDSEPNIQSAKPPSPEKTTAVASPPSSTPIPALSPPAKAPEPSENVVDSSQSKLIMLVDDFYYGRDGGKVSQLLNFPKVPTSFRCPHCTKRLKNNIRFMNHMKHHVELDQQNGEVDVHTICQHCYRQFSTPFQLQCHLENVHSPYESTTKCKICEWAFESEPMFLQHMKDTHKPGEMPYVCQVCQYRSSLYSEVDSHFRMIHEDTRHLLCPYCLKVFKNGNAFQQHFMRHQKKSVYHCNKCRLQFLFAKDKIEHKLQHHKTFRKPKQLEGLKPGTKVTIRASRGQPRTVPISSNDMLQGTGQDITPLSSSTDPQPIFLYPPVQRNVQKRAVKKMSVLGRQTCLECSFEIPDFPNHFPTYVHCSQCRYSTCCSRAYANHMINNHVPRKSPKYLALFKNYTACGVKLSCSSCLFVTSEGDAMAKHLVFNPSHEFSNIIFRGPSWISHSRHVQPQDKSMKNTCSAYSPSKAATVKTKSTLPAKDDLEPELTPAAYNRPLVCQEEECLNIDAQEDEQPTKEPEPASKKEQLSVKKLRVVLFALCCNTEQAAEHFRNPQRRIKRWLRRFQAFQEENLASLSEGKYLSLEAEEKLAEWVLTQREQQLPVNEETLFQKATKIGRSLEGGFKISYEWAVRFMLRHNLSTHTRRAVAHPLPKDVEDNASCFIEFVQRQIHTQDLPLSMIAAIDEISLFLDVEVLSSDDRKENALQTVGTGDPWCDVVLTILADGSVLPTLVFYRGHVQQPANVPESIMLEAKENGYSDDEVMELWATRVWQKHTECQNSKGMLVLDCHRTHLSEEVLSLLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNFLHKKWKEQAKEMADSTCDSDILLQLVLCWLAEVLEVISDSPELVQQSFLVASVLPGPDGTANSPTRNADMQEELIASLEEQLKLNGEQQQQAATEVQDRTQAEESADPEILHQLFEGESETESFYGFEDADLDLMEI
SIO_010081: POGZ
subclass of: SO_0000673
so part of: POGZ
location: join(329516..329639,340085..340260,341232..341340,342269..342448,343332..343529,343877..343986,344384..344718,345517..345671,346176..346276,347167..347313,348209..348343,348854..349026,349522..349662,350315..350374,350700..350812,351588..351612,351735..353307)
location: region:329516-353307:1
so has part: feature:329516-329639:1:exon
so has part: feature:340085-340260:1:exon
so has part: feature:341232-341340:1:exon
so has part: feature:342269-342448:1:exon
so has part: feature:343332-343529:1:exon
so has part: feature:343877-343986:1:exon
so has part: feature:344384-344718:1:exon
so has part: feature:345517-345671:1:exon
so has part: feature:346176-346276:1:exon
so has part: feature:347167-347313:1:exon
so has part: feature:348209-348343:1:exon
so has part: feature:348854-349026:1:exon
so has part: feature:349522-349662:1:exon
so has part: feature:350315-350374:1:exon
so has part: feature:350700-350812:1:exon
so has part: feature:351588-351612:1:exon
so has part: feature:351735-353307:1:exon

XP_040394555.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:329516-329639:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:340085-340260:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:341232-341340:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:342269-342448:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:343332-343529:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:343877-343986:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:344384-344718:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:345517-345671:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:346176-346276:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:347167-347313:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:348209-348343:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:348854-349026:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:349522-349662:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:350315-350374:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:350700-350812:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:351588-351612:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:351735-353307:1:exon

POGZ
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: POGZ
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pogo transposable element with ZNF domain isoform X4
translation: MVTQPVLRPVQIMQNANHVTNSPVTSQPIFITTQGFPVRNVRPVQNTMNQVGIVLNVQQGQTVRPITLVPAPGTQFVKPTVGVPQVFSQMAQVRPGTTMPVRPTTNTFTTVIPATLTIRSTVPQSQAQQQSKSTPSTSTTPTSTQPTTLGQLTVQQPGQSSQATNPKLVSIASFVTVKRPGVTGENSNEVAKLVNTLNTIPSLGQSPGPLVVSNSSPVHGSQRSSVSESSSSLKVSSSPIPTFDLQDGGRKVCPRCDAQFRVTEALRGHMCYCCPEMVEFLKKRKSLDSEPNIQSAKPPSPEKTTAVASPPSSTPIPALSPPAKAPEPSENVVDSSQSKLIMLVDDFYYGRDGGKVSQLLNFPKVPTSFRCPHCTKRLKNNIRFMNHMKHHVELDQQNGEVDVHTICQHCYRQFSTPFQLQCHLENVHSPYESTTKCKICEWAFESEPMFLQHMKDTHKPGEMPYVCQVCQYRSSLYSEVDSHFRMIHEDTRHLLCPYCLKVFKNGNAFQQHFMRHQKKSVYHCNKCRLQFLFAKDKIEHKLQHHKTFRKPKQLEGLKPGTKVTIRASRGQPRTVPISSNDMLQGTGQDITPLSSSTDPQPIFLYPPVQRNVQKRAVKKMSVLGRQTCLECSFEIPDFPNHFPTYVHCSQCRYSTCCSRAYANHMINNHVPRKSPKYLALFKNYTACGVKLSCSSCLFVTSEGDAMAKHLVFNPSHEFSNIIFRGPSWISHSRHVQPQDKSMKNTCSAYSPSKAATVKTKSTLPAKDDLEPELTPAAYNRPLVCQEEECLNIDAQEDEQPTKEPEPASKKEQLSVKKLRVVLFALCCNTEQAAEHFRNPQRRIKRWLRRFQAFQEENLASLSEGKYLSLEAEEKLAEWVLTQREQQLPVNEETLFQKATKIGRSLEGGFKISYEWAVRFMLRHNLSTHTRRAVAHPLPKDVEDNASCFIEFVQRQIHTQDLPLSMIAAIDEISLFLDVEVLSSDDRKENALQTVGTGDPWCDVVLTILADGSVLPTLVFYRGHVQQPANVPESIMLEAKENGYSDDEVMELWATRVWQKHTECQNSKGMLVLDCHRTHLSEEVLSLLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNFLHKKWKEQAKEMADSTCDSDILLQLVLCWLAEVLEVISDSPELVQQSFLVASVLPGPDGTANSPTRNADMQEELIASLEEQLKLNGEQQQQAATEVQDRTQAEESADPEILHQLFEGESETESFYGFEDADLDLMEI
SIO_010081: POGZ
subclass of: SO_0000673
so part of: POGZ
location: join(340159..340260,341232..341340,342269..342562,343332..343529,343877..343986,344384..344718,345517..345671,346176..346276,347167..347313,348209..348343,348854..349026,349522..349662,350315..350374,350700..350812,351588..351612,351735..353307)
location: region:340159-353307:1
so has part: feature:340159-340260:1:exon
so has part: feature:341232-341340:1:exon
so has part: feature:342269-342562:1:exon
so has part: feature:343332-343529:1:exon
so has part: feature:343877-343986:1:exon
so has part: feature:344384-344718:1:exon
so has part: feature:345517-345671:1:exon
so has part: feature:346176-346276:1:exon
so has part: feature:347167-347313:1:exon
so has part: feature:348209-348343:1:exon
so has part: feature:348854-349026:1:exon
so has part: feature:349522-349662:1:exon
so has part: feature:350315-350374:1:exon
so has part: feature:350700-350812:1:exon
so has part: feature:351588-351612:1:exon
so has part: feature:351735-353307:1:exon

XP_040394556.1
type: Protein
SIO_000068: ncbiprotein

position:340159:1
position: 340159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:340159-340260:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:341232-341340:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:342269-342562:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:343332-343529:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:343877-343986:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:344384-344718:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:345517-345671:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:346176-346276:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:347167-347313:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:348209-348343:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:348854-349026:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:349522-349662:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:350315-350374:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:350700-350812:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:351588-351612:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:351735-353307:1:exon

PSMB4
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: PSMB4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(356596..359380)
location: region:356596-359380:-1
so has part: feature:356596-359380:-1:exon
subclass of: SO_0000010

121060662
type: Gene
SIO_000068: ncbigene

position:356596:-1
position: 356596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:359380:-1
position: 359380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:356596-359380:-1:exon

PSMB4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PSMB4
product: proteasome 20S subunit beta 4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 long SRA reads, 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538623.1
SIO_010081: PSMB4
subclass of: SO_0000673
so part of: PSMB4
location: complement(join(356596..356737,356910..356998,357569..357685,357791..357872,358408..358554,358888..359094,359218..359380))
location: region:356596-359380:-1
so has part: feature:359218-359380:-1:exon
so has part: feature:358888-359094:-1:exon
so has part: feature:358408-358554:-1:exon
so has part: feature:357791-357872:-1:exon
so has part: feature:357569-357685:-1:exon
so has part: feature:356910-356998:-1:exon
so has part: feature:356596-356737:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:359218-359380:-1:exon

position:359218:-1
position: 359218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:358888-359094:-1:exon

position:358888:-1
position: 358888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:359094:-1
position: 359094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:358408-358554:-1:exon

position:358408:-1
position: 358408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:358554:-1
position: 358554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:357791-357872:-1:exon

position:357791:-1
position: 357791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:357872:-1
position: 357872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:357569-357685:-1:exon

position:357569:-1
position: 357569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:357685:-1
position: 357685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:356910-356998:-1:exon

position:356910:-1
position: 356910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:356998:-1
position: 356998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:356596-356737:-1:exon

position:356737:-1
position: 356737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PSMB4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PSMB4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proteasome subunit beta type-4
translation: MEAGGARAPPPFWAGGPAPGQAYSPGGPGPAAGLQPLTRTTTPMVTGTSVLGVKFDGGVMLAADMMGSYGSLARFRNISRLLRVNDSTVLGASGDYADFQYLAQIIDQMVIDEELLGDGHSYSPKAIHSWLTRVMYNRRSKINPLWNTVVIGGYYNGESFLGYVDMLGVAYEAPTLATGYGAFLAQPLMREVLEKKPTLTKEEARSLIERCMKILYYRDARSFNRYEIAIATEKGVEVEGPLTLEANWDIANLVSGFE
SIO_010081: PSMB4
subclass of: SO_0000673
so part of: PSMB4
location: complement(join(356725..356737,356910..356998,357569..357685,357791..357872,358408..358554,358888..359094,359218..359339))
location: region:356725-359339:-1
so has part: feature:359218-359339:-1:exon
so has part: feature:358888-359094:-1:exon
so has part: feature:358408-358554:-1:exon
so has part: feature:357791-357872:-1:exon
so has part: feature:357569-357685:-1:exon
so has part: feature:356910-356998:-1:exon
so has part: feature:356725-356737:-1:exon

XP_040394557.1
type: Protein
SIO_000068: ncbiprotein

position:356725:-1
position: 356725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:359339:-1
position: 359339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:359218-359339:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:358888-359094:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:358408-358554:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:357791-357872:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:357569-357685:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:356910-356998:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:356725-356737:-1:exon

CGN
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: CGN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 359834..376506
location: region:359834-376506:1
so has part: feature:359834-376506:1:exon
subclass of: SO_0000010

121060663
type: Gene
SIO_000068: ncbigene

position:359834:1
position: 359834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:376506:1
position: 376506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:359834-376506:1:exon

CGN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CGN
product: cingulin, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_040538625.1
SIO_010081: CGN
subclass of: SO_0000673
so part of: CGN
location: join(359834..359887,366187..367270,367747..367847,368122..368191,368450..368545,368679..368830,369134..369275,369353..369565,369915..370063,370159..370300,370403..370603,370817..371023,371155..371412,371938..372108,372187..372348,373056..373145,374448..374531,375209..375327,375407..375515,375598..375761,375851..376506)
location: region:359834-376506:1
so has part: feature:359834-359887:1:exon
so has part: feature:366187-367270:1:exon
so has part: feature:367747-367847:1:exon
so has part: feature:368122-368191:1:exon
so has part: feature:368450-368545:1:exon
so has part: feature:368679-368830:1:exon
so has part: feature:369134-369275:1:exon
so has part: feature:369353-369565:1:exon
so has part: feature:369915-370063:1:exon
so has part: feature:370159-370300:1:exon
so has part: feature:370403-370603:1:exon
so has part: feature:370817-371023:1:exon
so has part: feature:371155-371412:1:exon
so has part: feature:371938-372108:1:exon
so has part: feature:372187-372348:1:exon
so has part: feature:373056-373145:1:exon
so has part: feature:374448-374531:1:exon
so has part: feature:375209-375327:1:exon
so has part: feature:375407-375515:1:exon
so has part: feature:375598-375761:1:exon
so has part: feature:375851-376506:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:359834-359887:1:exon

position:359887:1
position: 359887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:366187-367270:1:exon

position:366187:1
position: 366187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:367270:1
position: 367270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:367747-367847:1:exon

position:367747:1
position: 367747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:367847:1
position: 367847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:368122-368191:1:exon

position:368122:1
position: 368122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:368191:1
position: 368191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:368450-368545:1:exon

position:368450:1
position: 368450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:368545:1
position: 368545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:368679-368830:1:exon

position:368679:1
position: 368679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:368830:1
position: 368830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:369134-369275:1:exon

position:369134:1
position: 369134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:369275:1
position: 369275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:369353-369565:1:exon

position:369353:1
position: 369353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:369565:1
position: 369565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:369915-370063:1:exon

position:369915:1
position: 369915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:370063:1
position: 370063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:370159-370300:1:exon

position:370159:1
position: 370159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:370300:1
position: 370300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:370403-370603:1:exon

position:370403:1
position: 370403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:370603:1
position: 370603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:370817-371023:1:exon

position:370817:1
position: 370817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:371023:1
position: 371023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:371155-371412:1:exon

position:371155:1
position: 371155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:371412:1
position: 371412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:371938-372108:1:exon

position:371938:1
position: 371938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:372108:1
position: 372108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:372187-372348:1:exon

position:372187:1
position: 372187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:372348:1
position: 372348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:373056-373145:1:exon

position:373056:1
position: 373056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:373145:1
position: 373145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:374448-374531:1:exon

position:374448:1
position: 374448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:374531:1
position: 374531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:375209-375327:1:exon

position:375209:1
position: 375209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:375327:1
position: 375327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:375407-375515:1:exon

position:375407:1
position: 375407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:375515:1
position: 375515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:375598-375761:1:exon

position:375598:1
position: 375598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:375761:1
position: 375761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:375851-376506:1:exon

position:375851:1
position: 375851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CGN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CGN
product: cingulin, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_040538624.1
SIO_010081: CGN
subclass of: SO_0000673
so part of: CGN
location: join(365671..365828,366187..367270,367747..367847,368122..368191,368450..368545,368679..368830,369134..369275,369353..369565,369915..370063,370159..370300,370403..370603,370817..371023,371155..371412,371938..372108,372187..372348,373056..373145,374448..374531,375209..375327,375407..375515,375598..375761,375851..376506)
location: region:365671-376506:1
so has part: feature:365671-365828:1:exon
so has part: feature:366187-367270:1:exon
so has part: feature:367747-367847:1:exon
so has part: feature:368122-368191:1:exon
so has part: feature:368450-368545:1:exon
so has part: feature:368679-368830:1:exon
so has part: feature:369134-369275:1:exon
so has part: feature:369353-369565:1:exon
so has part: feature:369915-370063:1:exon
so has part: feature:370159-370300:1:exon
so has part: feature:370403-370603:1:exon
so has part: feature:370817-371023:1:exon
so has part: feature:371155-371412:1:exon
so has part: feature:371938-372108:1:exon
so has part: feature:372187-372348:1:exon
so has part: feature:373056-373145:1:exon
so has part: feature:374448-374531:1:exon
so has part: feature:375209-375327:1:exon
so has part: feature:375407-375515:1:exon
so has part: feature:375598-375761:1:exon
so has part: feature:375851-376506:1:exon

position:365671:1
position: 365671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:365671-365828:1:exon

position:365828:1
position: 365828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:366187-367270:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:367747-367847:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:368122-368191:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:368450-368545:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:368679-368830:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:369134-369275:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:369353-369565:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:369915-370063:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:370159-370300:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:370403-370603:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:370817-371023:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:371155-371412:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:371938-372108:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:372187-372348:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:373056-373145:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:374448-374531:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:375209-375327:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:375407-375515:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:375598-375761:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:375851-376506:1:exon

CGN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CGN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cingulin isoform X1
translation: MSGRWVRRTSGRTTVLRPGMDWPASADMAEKQNPVDYGVQIRFINDLQEPKKPPKARAKPGSYGVAVRVQGIAGQPFVVLNSGEKGGDSFGVQIKSEGAYTGPAAGPRPPELPPELPPGSVSPDSELPENPYVRRQPSWSTSDEEPSGGVPAPPRHKPPTKRPPREELRRTQSHGNLLTADDDEGSFAPGPPRGQPGGTHQPRALSGTRSSSMLSIAGPPRLAQGEVSGFGAAIREPSSDSEAPGRRRPGDADGSDIDTKPLSSVDSLISKFDGKVQQRGRAARRGRIPSEERKRSQSLDGRVSRRAVPDGRELSGAQRGDVHPLPSVPTGSLGWEQGARPAEEGATRNQRANRGTEEPPTERLQSKARAELQFKSTPDLLRDQREVAQPGSSEHTKELIYSILKEGSRDSETSLKRKTTLVFEKVQELMVPAKDTACSQPQHGELARKVEELQEQLDKETKLRQKLELTRDPARSGTARALEARLQEAEEESQRLRGALEKKGQELQRSLQELAEAKAARGRAETRLGEREEQLAAMRKELGRLHEASGASPDREALYKELLETREELEEALSSKQRQEEHLRLRERELTALKGALKEEVASHDKELDRVRQQYQSDMDQLRRSMEDISQDQANLESEKQKISAVVRNLQRELEESAEETGHWRDMFQKNKDELRTTKQELLQVKLEREEFEEELRELRERFSAVREEADQARSSALDPGELEALRKELRQAQEAQRELAAEKQEQDELLRQRERELQALQGTMREEASSRDGAIEQYRRDLQQLQKERDEAVKEKASLESERESSEQARKAVESTLRELQEQKDDLRRKVLGMETQLKEYERMGESWEGSQARLKEKVTKLEAERRQMEESLGESTDREQELLMAKRSLETRLDEAQRSLARLTQEHQELSASYQEEQRQKEQLKRAKSELEEQKRLLDRTTEKLNKELEQMTEESNSSLAVLKSQLEEFKEKSRKEITDSQKQAKDRGAEVEKMQFSMGRLQDEVTRLKQALQDSQAERESALLDKEVLLQRLHNLEQEADAKRRSQDDRSRQVKALEEKSKRLEVELDEERTTVELLTERVNRSRDQIDQLRAELLQERSSRQDLECDKVSLERQNKELKSRLASSEGLQKPSGNVSQLEARVEELQDKLQAEEREKSVLLSSTRKLERKVKELTIQIDDERQHVSDQKDQLSLRVKALKRQVDEAEEEIERLEAARKKAQRELEEQHELNEQLQARIKTLEKEAWRKAARSAAESSLQDDALSSDEELDSAYGPSSIASLLNEANLQTSSC
SIO_010081: CGN
subclass of: SO_0000673
so part of: CGN
location: join(365794..365828,366187..367270,367747..367847,368122..368191,368450..368545,368679..368830,369134..369275,369353..369565,369915..370063,370159..370300,370403..370603,370817..371023,371155..371412,371938..372108,372187..372348,373056..373145,374448..374531,375209..375327,375407..375515,375598..375761,375851..375992)
location: region:365794-375992:1
so has part: feature:365794-365828:1:exon
so has part: feature:366187-367270:1:exon
so has part: feature:367747-367847:1:exon
so has part: feature:368122-368191:1:exon
so has part: feature:368450-368545:1:exon
so has part: feature:368679-368830:1:exon
so has part: feature:369134-369275:1:exon
so has part: feature:369353-369565:1:exon
so has part: feature:369915-370063:1:exon
so has part: feature:370159-370300:1:exon
so has part: feature:370403-370603:1:exon
so has part: feature:370817-371023:1:exon
so has part: feature:371155-371412:1:exon
so has part: feature:371938-372108:1:exon
so has part: feature:372187-372348:1:exon
so has part: feature:373056-373145:1:exon
so has part: feature:374448-374531:1:exon
so has part: feature:375209-375327:1:exon
so has part: feature:375407-375515:1:exon
so has part: feature:375598-375761:1:exon
so has part: feature:375851-375992:1:exon

XP_040394558.1
type: Protein
SIO_000068: ncbiprotein

position:365794:1
position: 365794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:375992:1
position: 375992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:365794-365828:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:366187-367270:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:367747-367847:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:368122-368191:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:368450-368545:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:368679-368830:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:369134-369275:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:369353-369565:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:369915-370063:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:370159-370300:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:370403-370603:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:370817-371023:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:371155-371412:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:371938-372108:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:372187-372348:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:373056-373145:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:374448-374531:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:375209-375327:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:375407-375515:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:375598-375761:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:375851-375992:1:exon

CGN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CGN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cingulin isoform X2
translation: MDWPASADMAEKQNPVDYGVQIRFINDLQEPKKPPKARAKPGSYGVAVRVQGIAGQPFVVLNSGEKGGDSFGVQIKSEGAYTGPAAGPRPPELPPELPPGSVSPDSELPENPYVRRQPSWSTSDEEPSGGVPAPPRHKPPTKRPPREELRRTQSHGNLLTADDDEGSFAPGPPRGQPGGTHQPRALSGTRSSSMLSIAGPPRLAQGEVSGFGAAIREPSSDSEAPGRRRPGDADGSDIDTKPLSSVDSLISKFDGKVQQRGRAARRGRIPSEERKRSQSLDGRVSRRAVPDGRELSGAQRGDVHPLPSVPTGSLGWEQGARPAEEGATRNQRANRGTEEPPTERLQSKARAELQFKSTPDLLRDQREVAQPGSSEHTKELIYSILKEGSRDSETSLKRKTTLVFEKVQELMVPAKDTACSQPQHGELARKVEELQEQLDKETKLRQKLELTRDPARSGTARALEARLQEAEEESQRLRGALEKKGQELQRSLQELAEAKAARGRAETRLGEREEQLAAMRKELGRLHEASGASPDREALYKELLETREELEEALSSKQRQEEHLRLRERELTALKGALKEEVASHDKELDRVRQQYQSDMDQLRRSMEDISQDQANLESEKQKISAVVRNLQRELEESAEETGHWRDMFQKNKDELRTTKQELLQVKLEREEFEEELRELRERFSAVREEADQARSSALDPGELEALRKELRQAQEAQRELAAEKQEQDELLRQRERELQALQGTMREEASSRDGAIEQYRRDLQQLQKERDEAVKEKASLESERESSEQARKAVESTLRELQEQKDDLRRKVLGMETQLKEYERMGESWEGSQARLKEKVTKLEAERRQMEESLGESTDREQELLMAKRSLETRLDEAQRSLARLTQEHQELSASYQEEQRQKEQLKRAKSELEEQKRLLDRTTEKLNKELEQMTEESNSSLAVLKSQLEEFKEKSRKEITDSQKQAKDRGAEVEKMQFSMGRLQDEVTRLKQALQDSQAERESALLDKEVLLQRLHNLEQEADAKRRSQDDRSRQVKALEEKSKRLEVELDEERTTVELLTERVNRSRDQIDQLRAELLQERSSRQDLECDKVSLERQNKELKSRLASSEGLQKPSGNVSQLEARVEELQDKLQAEEREKSVLLSSTRKLERKVKELTIQIDDERQHVSDQKDQLSLRVKALKRQVDEAEEEIERLEAARKKAQRELEEQHELNEQLQARIKTLEKEAWRKAARSAAESSLQDDALSSDEELDSAYGPSSIASLLNEANLQTSSC
SIO_010081: CGN
subclass of: SO_0000673
so part of: CGN
location: join(366209..367270,367747..367847,368122..368191,368450..368545,368679..368830,369134..369275,369353..369565,369915..370063,370159..370300,370403..370603,370817..371023,371155..371412,371938..372108,372187..372348,373056..373145,374448..374531,375209..375327,375407..375515,375598..375761,375851..375992)
location: region:366209-375992:1
so has part: feature:366209-367270:1:exon
so has part: feature:367747-367847:1:exon
so has part: feature:368122-368191:1:exon
so has part: feature:368450-368545:1:exon
so has part: feature:368679-368830:1:exon
so has part: feature:369134-369275:1:exon
so has part: feature:369353-369565:1:exon
so has part: feature:369915-370063:1:exon
so has part: feature:370159-370300:1:exon
so has part: feature:370403-370603:1:exon
so has part: feature:370817-371023:1:exon
so has part: feature:371155-371412:1:exon
so has part: feature:371938-372108:1:exon
so has part: feature:372187-372348:1:exon
so has part: feature:373056-373145:1:exon
so has part: feature:374448-374531:1:exon
so has part: feature:375209-375327:1:exon
so has part: feature:375407-375515:1:exon
so has part: feature:375598-375761:1:exon
so has part: feature:375851-375992:1:exon

XP_040394559.1
type: Protein
SIO_000068: ncbiprotein

position:366209:1
position: 366209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:366209-367270:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:367747-367847:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:368122-368191:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:368450-368545:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:368679-368830:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:369134-369275:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:369353-369565:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:369915-370063:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:370159-370300:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:370403-370603:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:370817-371023:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:371155-371412:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:371938-372108:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:372187-372348:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:373056-373145:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:374448-374531:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:375209-375327:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:375407-375515:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:375598-375761:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:375851-375992:1:exon

TUFT1
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: TUFT1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 377786..392559
location: region:377786-392559:1
so has part: feature:377786-392559:1:exon
subclass of: SO_0000010

121060716
type: Gene
SIO_000068: ncbigene

position:377786:1
position: 377786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:392559:1
position: 392559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:377786-392559:1:exon

TUFT1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: TUFT1
product: tuftelin 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 78 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538755.1
SIO_010081: TUFT1
subclass of: SO_0000673
so part of: TUFT1
location: join(377786..377867,382522..382590,382945..383049,383421..383507,385674..385745,386400..386513,388000..388128,388872..388966,389525..389630,390153..390236,391054..391154,391424..392559)
location: region:377786-392559:1
so has part: feature:377786-377867:1:exon
so has part: feature:382522-382590:1:exon
so has part: feature:382945-383049:1:exon
so has part: feature:383421-383507:1:exon
so has part: feature:385674-385745:1:exon
so has part: feature:386400-386513:1:exon
so has part: feature:388000-388128:1:exon
so has part: feature:388872-388966:1:exon
so has part: feature:389525-389630:1:exon
so has part: feature:390153-390236:1:exon
so has part: feature:391054-391154:1:exon
so has part: feature:391424-392559:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:377786-377867:1:exon

position:377867:1
position: 377867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:382522-382590:1:exon

position:382522:1
position: 382522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:382590:1
position: 382590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:382945-383049:1:exon

position:382945:1
position: 382945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:383049:1
position: 383049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:383421-383507:1:exon

position:383421:1
position: 383421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:383507:1
position: 383507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:385674-385745:1:exon

position:385674:1
position: 385674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:385745:1
position: 385745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:386400-386513:1:exon

position:386400:1
position: 386400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:386513:1
position: 386513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:388000-388128:1:exon

position:388000:1
position: 388000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:388128:1
position: 388128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:388872-388966:1:exon

position:388872:1
position: 388872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:388966:1
position: 388966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:389525-389630:1:exon

position:389525:1
position: 389525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:389630:1
position: 389630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:390153-390236:1:exon

position:390153:1
position: 390153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:390236:1
position: 390236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:391054-391154:1:exon

position:391054:1
position: 391054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:391154:1
position: 391154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:391424-392559:1:exon

position:391424:1
position: 391424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TUFT1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: TUFT1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tuftelin isoform X4
translation: MTGRQGWCAVLDVRPHGQSPESVKVLRLTLPNDLPGDRQVKQKPVGKAFAMVANRSSNGHSLASECIKSNDGDEEIIKVYLKARAEGGVNHEEHVSQLKSEVRYIQEVVLEKQNGSWLHPESPRADSWEDQEEDYSGDDVEKIRQTAKRLFTKLQEAEKRHQLEKKDLERAVSQYQEEAEQTSSALRRAEKSVLEKEVQVDELQRLLAGMEKEHRSLLLKMKEGEAELARLRSAEGDRLAEQDRSAKLEKEVAMLREKIHHLDDMLKSQQRKVRQMIEQLQNSKTVIQAKDAVIQELKEKVAYLEAENLEMHDRIEHLIEKQVSRGGHSSRARSKSEYVSSKRLSGPKPLPLIRVVET
SIO_010081: TUFT1
subclass of: SO_0000673
so part of: TUFT1
location: join(377808..377867,382522..382590,382945..383049,383421..383507,385674..385745,386400..386513,388000..388128,388872..388966,389525..389630,390153..390236,391054..391154,391424..391478)
location: region:377808-391478:1
so has part: feature:377808-377867:1:exon
so has part: feature:382522-382590:1:exon
so has part: feature:382945-383049:1:exon
so has part: feature:383421-383507:1:exon
so has part: feature:385674-385745:1:exon
so has part: feature:386400-386513:1:exon
so has part: feature:388000-388128:1:exon
so has part: feature:388872-388966:1:exon
so has part: feature:389525-389630:1:exon
so has part: feature:390153-390236:1:exon
so has part: feature:391054-391154:1:exon
so has part: feature:391424-391478:1:exon

XP_040394689.1
type: Protein
SIO_000068: ncbiprotein

position:377808:1
position: 377808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:391478:1
position: 391478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:377808-377867:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:382522-382590:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:382945-383049:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:383421-383507:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:385674-385745:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:386400-386513:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:388000-388128:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:388872-388966:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:389525-389630:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:390153-390236:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:391054-391154:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:391424-391478:1:exon

TUFT1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: TUFT1
product: tuftelin 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_040538754.1
SIO_010081: TUFT1
subclass of: SO_0000673
so part of: TUFT1
location: join(379669..379725,382522..382590,382945..383049,383421..383507,385248..385328,385674..385745,386400..386513,388000..388128,388872..388966,389525..389630,390153..390236,391054..391154,391424..392559)
location: region:379669-392559:1
so has part: feature:379669-379725:1:exon
so has part: feature:382522-382590:1:exon
so has part: feature:382945-383049:1:exon
so has part: feature:383421-383507:1:exon
so has part: feature:385248-385328:1:exon
so has part: feature:385674-385745:1:exon
so has part: feature:386400-386513:1:exon
so has part: feature:388000-388128:1:exon
so has part: feature:388872-388966:1:exon
so has part: feature:389525-389630:1:exon
so has part: feature:390153-390236:1:exon
so has part: feature:391054-391154:1:exon
so has part: feature:391424-392559:1:exon

position:379669:1
position: 379669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:379669-379725:1:exon

position:379725:1
position: 379725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:382522-382590:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:382945-383049:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:383421-383507:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:385248-385328:1:exon

position:385248:1
position: 385248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:385328:1
position: 385328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:385674-385745:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:386400-386513:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:388000-388128:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:388872-388966:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:389525-389630:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:390153-390236:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:391054-391154:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:391424-392559:1:exon

TUFT1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: TUFT1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tuftelin isoform X3
translation: MESVKVLRLTLPNDLPGDRQVKQKPVGKAFAMVANRSSNGHSLASECIKSNDGDEEIIKVYLKARAEGGVNHEEHVSQLKSEVRYIQEARSSLKKLREDLSSKLENRQGDKQHAQVVLEKQNGSWLHPESPRADSWEDQEEDYSGDDVEKIRQTAKRLFTKLQEAEKRHQLEKKDLERAVSQYQEEAEQTSSALRRAEKSVLEKEVQVDELQRLLAGMEKEHRSLLLKMKEGEAELARLRSAEGDRLAEQDRSAKLEKEVAMLREKIHHLDDMLKSQQRKVRQMIEQLQNSKTVIQAKDAVIQELKEKVAYLEAENLEMHDRIEHLIEKQVSRGGHSSRARSKSEYVSSKRLSGPKPLPLIRVVET
SIO_010081: TUFT1
subclass of: SO_0000673
so part of: TUFT1
location: join(379723..379725,382522..382590,382945..383049,383421..383507,385248..385328,385674..385745,386400..386513,388000..388128,388872..388966,389525..389630,390153..390236,391054..391154,391424..391478)
location: region:379723-391478:1
so has part: feature:379723-379725:1:exon
so has part: feature:382522-382590:1:exon
so has part: feature:382945-383049:1:exon
so has part: feature:383421-383507:1:exon
so has part: feature:385248-385328:1:exon
so has part: feature:385674-385745:1:exon
so has part: feature:386400-386513:1:exon
so has part: feature:388000-388128:1:exon
so has part: feature:388872-388966:1:exon
so has part: feature:389525-389630:1:exon
so has part: feature:390153-390236:1:exon
so has part: feature:391054-391154:1:exon
so has part: feature:391424-391478:1:exon

XP_040394688.1
type: Protein
SIO_000068: ncbiprotein

position:379723:1
position: 379723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:379723-379725:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:382522-382590:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:382945-383049:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:383421-383507:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:385248-385328:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:385674-385745:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:386400-386513:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:388000-388128:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:388872-388966:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:389525-389630:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:390153-390236:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:391054-391154:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:391424-391478:1:exon

TUFT1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: TUFT1
product: tuftelin 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_040538752.1
SIO_010081: TUFT1
subclass of: SO_0000673
so part of: TUFT1
location: join(381599..381718,382522..382590,382945..383049,383421..383507,385248..385328,385674..385745,386400..386513,388000..388128,388872..388966,389525..389630,390153..390236,391054..391154,391424..392559)
location: region:381599-392559:1
so has part: feature:381599-381718:1:exon
so has part: feature:382522-382590:1:exon
so has part: feature:382945-383049:1:exon
so has part: feature:383421-383507:1:exon
so has part: feature:385248-385328:1:exon
so has part: feature:385674-385745:1:exon
so has part: feature:386400-386513:1:exon
so has part: feature:388000-388128:1:exon
so has part: feature:388872-388966:1:exon
so has part: feature:389525-389630:1:exon
so has part: feature:390153-390236:1:exon
so has part: feature:391054-391154:1:exon
so has part: feature:391424-392559:1:exon

position:381599:1
position: 381599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:381599-381718:1:exon

position:381718:1
position: 381718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:382522-382590:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:382945-383049:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:383421-383507:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:385248-385328:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:385674-385745:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:386400-386513:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:388000-388128:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:388872-388966:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:389525-389630:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:390153-390236:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:391054-391154:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:391424-392559:1:exon

TUFT1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: TUFT1
product: tuftelin 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_040538753.1
SIO_010081: TUFT1
subclass of: SO_0000673
so part of: TUFT1
location: join(381599..381718,382522..382590,382945..383049,383421..383507,385674..385745,386400..386513,388000..388128,388872..388966,389525..389630,390153..390236,391054..391154,391424..392559)
location: region:381599-392559:1
so has part: feature:381599-381718:1:exon
so has part: feature:382522-382590:1:exon
so has part: feature:382945-383049:1:exon
so has part: feature:383421-383507:1:exon
so has part: feature:385674-385745:1:exon
so has part: feature:386400-386513:1:exon
so has part: feature:388000-388128:1:exon
so has part: feature:388872-388966:1:exon
so has part: feature:389525-389630:1:exon
so has part: feature:390153-390236:1:exon
so has part: feature:391054-391154:1:exon
so has part: feature:391424-392559:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:381599-381718:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:382522-382590:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:382945-383049:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:383421-383507:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:385674-385745:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:386400-386513:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:388000-388128:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:388872-388966:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:389525-389630:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:390153-390236:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:391054-391154:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:391424-392559:1:exon

TUFT1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: TUFT1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tuftelin isoform X1
translation: MPASPPPSSSGAEQLLLSELPSARSMSDGCLGAGEESVKVLRLTLPNDLPGDRQVKQKPVGKAFAMVANRSSNGHSLASECIKSNDGDEEIIKVYLKARAEGGVNHEEHVSQLKSEVRYIQEARSSLKKLREDLSSKLENRQGDKQHAQVVLEKQNGSWLHPESPRADSWEDQEEDYSGDDVEKIRQTAKRLFTKLQEAEKRHQLEKKDLERAVSQYQEEAEQTSSALRRAEKSVLEKEVQVDELQRLLAGMEKEHRSLLLKMKEGEAELARLRSAEGDRLAEQDRSAKLEKEVAMLREKIHHLDDMLKSQQRKVRQMIEQLQNSKTVIQAKDAVIQELKEKVAYLEAENLEMHDRIEHLIEKQVSRGGHSSRARSKSEYVSSKRLSGPKPLPLIRVVET
SIO_010081: TUFT1
subclass of: SO_0000673
so part of: TUFT1
location: join(381614..381718,382522..382590,382945..383049,383421..383507,385248..385328,385674..385745,386400..386513,388000..388128,388872..388966,389525..389630,390153..390236,391054..391154,391424..391478)
location: region:381614-391478:1
so has part: feature:381614-381718:1:exon
so has part: feature:382522-382590:1:exon
so has part: feature:382945-383049:1:exon
so has part: feature:383421-383507:1:exon
so has part: feature:385248-385328:1:exon
so has part: feature:385674-385745:1:exon
so has part: feature:386400-386513:1:exon
so has part: feature:388000-388128:1:exon
so has part: feature:388872-388966:1:exon
so has part: feature:389525-389630:1:exon
so has part: feature:390153-390236:1:exon
so has part: feature:391054-391154:1:exon
so has part: feature:391424-391478:1:exon

XP_040394686.1
type: Protein
SIO_000068: ncbiprotein

position:381614:1
position: 381614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:381614-381718:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:382522-382590:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:382945-383049:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:383421-383507:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:385248-385328:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:385674-385745:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:386400-386513:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:388000-388128:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:388872-388966:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:389525-389630:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:390153-390236:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:391054-391154:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:391424-391478:1:exon

TUFT1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: TUFT1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tuftelin isoform X2
translation: MPASPPPSSSGAEQLLLSELPSARSMSDGCLGAGEESVKVLRLTLPNDLPGDRQVKQKPVGKAFAMVANRSSNGHSLASECIKSNDGDEEIIKVYLKARAEGGVNHEEHVSQLKSEVRYIQEVVLEKQNGSWLHPESPRADSWEDQEEDYSGDDVEKIRQTAKRLFTKLQEAEKRHQLEKKDLERAVSQYQEEAEQTSSALRRAEKSVLEKEVQVDELQRLLAGMEKEHRSLLLKMKEGEAELARLRSAEGDRLAEQDRSAKLEKEVAMLREKIHHLDDMLKSQQRKVRQMIEQLQNSKTVIQAKDAVIQELKEKVAYLEAENLEMHDRIEHLIEKQVSRGGHSSRARSKSEYVSSKRLSGPKPLPLIRVVET
SIO_010081: TUFT1
subclass of: SO_0000673
so part of: TUFT1
location: join(381614..381718,382522..382590,382945..383049,383421..383507,385674..385745,386400..386513,388000..388128,388872..388966,389525..389630,390153..390236,391054..391154,391424..391478)
location: region:381614-391478:1
so has part: feature:381614-381718:1:exon
so has part: feature:382522-382590:1:exon
so has part: feature:382945-383049:1:exon
so has part: feature:383421-383507:1:exon
so has part: feature:385674-385745:1:exon
so has part: feature:386400-386513:1:exon
so has part: feature:388000-388128:1:exon
so has part: feature:388872-388966:1:exon
so has part: feature:389525-389630:1:exon
so has part: feature:390153-390236:1:exon
so has part: feature:391054-391154:1:exon
so has part: feature:391424-391478:1:exon

XP_040394687.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:381614-381718:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:382522-382590:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:382945-383049:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:383421-383507:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:385674-385745:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:386400-386513:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:388000-388128:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:388872-388966:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:389525-389630:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:390153-390236:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:391054-391154:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:391424-391478:1:exon

SNX27
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: SNX27
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 393073..418688
location: region:393073-418688:1
so has part: feature:393073-418688:1:exon
subclass of: SO_0000010

121060713
type: Gene
SIO_000068: ncbigene

position:393073:1
position: 393073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:418688:1
position: 418688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:393073-418688:1:exon

SNX27
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: SNX27
product: sorting nexin 27, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040538747.1
SIO_010081: SNX27
subclass of: SO_0000673
so part of: SNX27
location: join(393073..393384,402717..402948,403091..403283,404055..404119,405101..405205,406344..406422,408405..408568,409703..409792,411241..411390,411657..411785,411987..412046,417039..418688)
location: region:393073-418688:1
so has part: feature:393073-393384:1:exon
so has part: feature:402717-402948:1:exon
so has part: feature:403091-403283:1:exon
so has part: feature:404055-404119:1:exon
so has part: feature:405101-405205:1:exon
so has part: feature:406344-406422:1:exon
so has part: feature:408405-408568:1:exon
so has part: feature:409703-409792:1:exon
so has part: feature:411241-411390:1:exon
so has part: feature:411657-411785:1:exon
so has part: feature:411987-412046:1:exon
so has part: feature:417039-418688:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:393073-393384:1:exon

position:393384:1
position: 393384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:402717-402948:1:exon

position:402717:1
position: 402717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:402948:1
position: 402948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:403091-403283:1:exon

position:403091:1
position: 403091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:403283:1
position: 403283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:404055-404119:1:exon

position:404055:1
position: 404055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:404119:1
position: 404119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:405101-405205:1:exon

position:405101:1
position: 405101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:405205:1
position: 405205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:406344-406422:1:exon

position:406344:1
position: 406344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:406422:1
position: 406422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:408405-408568:1:exon

position:408405:1
position: 408405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:408568:1
position: 408568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:409703-409792:1:exon

position:409703:1
position: 409703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:409792:1
position: 409792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:411241-411390:1:exon

position:411241:1
position: 411241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:411390:1
position: 411390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:411657-411785:1:exon

position:411657:1
position: 411657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:411785:1
position: 411785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:411987-412046:1:exon

position:411987:1
position: 411987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:412046:1
position: 412046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:417039-418688:1:exon

position:417039:1
position: 417039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SNX27
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 8869
gene: SNX27
product: sorting nexin 27, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005814909.1
SIO_010081: SNX27
so part of: SNX27
location: join(393074..393384,402717..402948,403091..403283,404055..404119,405101..405205,406344..406422,408405..408568,409703..409792,411241..411390,411657..411785,411987..412046,413916..414398,417039..418688)
location: region:393074-418688:1
so has part: feature:393074-393384:1:exon
so has part: feature:402717-402948:1:exon
so has part: feature:403091-403283:1:exon
so has part: feature:404055-404119:1:exon
so has part: feature:405101-405205:1:exon
so has part: feature:406344-406422:1:exon
so has part: feature:408405-408568:1:exon
so has part: feature:409703-409792:1:exon
so has part: feature:411241-411390:1:exon
so has part: feature:411657-411785:1:exon
so has part: feature:411987-412046:1:exon
so has part: feature:413916-414398:1:exon
so has part: feature:417039-418688:1:exon

position:393074:1
position: 393074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition