Cygnus olor isolate bCygOlo1 chromosome 26, bCygOlo1.pri.v2, whole genome shotgun sequence.
type: Entry
definition: Cygnus olor isolate bCygOlo1 chromosome 26, bCygOlo1.pri.v2, whole genome shotgun sequence.
sequence version: NC_049194.1
sequence date: 2021-04-08
sequence: sequence
division: CON
label: NC_049194.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA642912
dblink: SAMN12621369
keyword: WGS
keyword: RefSeq
source: Cygnus olor (mute swan)
organism: Cygnus olor
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM020090.2.\nAssembly name: bCygOlo1.pri.v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/03/31. The original whole-genome shotgun project has the\naccession WNMI00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 30-NOV-2020\nAssembly Method :: FALCON v. 2018.31.08-03.06; FALCON-Unzip\n v. 6.0.0.47841; purge_haplotigs v. 1.0.3+\n 1.Nov.2018; scaff10x v. 4.1.0; Bionano\n solve v. 3.2.1_04122018; Salsa HiC v.\n 2.2; Arrow smrtanalysis Pacbio polishing\n & gap filling v. 6.0.0.47841; longranger\n align v. 2.2.2; freebayes Illumina\n polishing v. 1.3.1; gEVAL manual curation\n v. 2020-11-30; VGP assembly pipeline\n individual v. 1.5\nAssembly Name :: bCygOlo1.pri.v2\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 60.23x\nSequencing Technology :: PacBio Sequel 1 CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Cygnus olor Annotation Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.6\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 5979541
topology: linear
so has quality: SO_0000987
location: 1..5979541
location: region:1-5979541:1
RO_0002162: 8869

NC_049194
type: RefSeq
SIO_000068: refseq

PRJNA642912
type: BioProject
SIO_000068: bioproject

SAMN12621369
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5979541:1
position: 5979541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5979541:1:source
so part of: sequence
organism: Cygnus olor
mol type: genomic DNA
isolate: bCygOlo1
chromosome: 26
sex: male
tissue type: muscle
dev stage: adult
country: Germany: Mainau
lat lon: 50.149850 N 11.063270 E
collection date: 2015-07-01
collected by: Robert Kraus

8869
type: Taxonomy
SIO_000068: taxonomy

LOC121060288
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: LOC121060288
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(26144..42505)
location: region:26144-42505:-1
so has part: feature:26144-42505:-1:exon
subclass of: SO_0000010

121060288
type: Gene
SIO_000068: ncbigene

position:26144:-1
position: 26144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42505:-1
position: 42505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26144-42505:-1:exon

LOC121060288
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060288
product: scaffold attachment factor B1-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_040537960.1
SIO_010081: LOC121060288
subclass of: SO_0000673
so part of: LOC121060288
location: complement(join(26144..26537,26753..26819,27015..27127,27847..27968,28782..28821,29603..29740,30575..30868,31502..31638,32171..32259,33017..33156,34065..34165,34265..34414,35104..35204,35897..35946,36360..36859,37806..37833,38490..38552,39732..39938,40027..40091,41106..41193,42121..42505))
location: region:26144-42505:-1
so has part: feature:42121-42505:-1:exon
so has part: feature:41106-41193:-1:exon
so has part: feature:40027-40091:-1:exon
so has part: feature:39732-39938:-1:exon
so has part: feature:38490-38552:-1:exon
so has part: feature:37806-37833:-1:exon
so has part: feature:36360-36859:-1:exon
so has part: feature:35897-35946:-1:exon
so has part: feature:35104-35204:-1:exon
so has part: feature:34265-34414:-1:exon
so has part: feature:34065-34165:-1:exon
so has part: feature:33017-33156:-1:exon
so has part: feature:32171-32259:-1:exon
so has part: feature:31502-31638:-1:exon
so has part: feature:30575-30868:-1:exon
so has part: feature:29603-29740:-1:exon
so has part: feature:28782-28821:-1:exon
so has part: feature:27847-27968:-1:exon
so has part: feature:27015-27127:-1:exon
so has part: feature:26753-26819:-1:exon
so has part: feature:26144-26537:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:42121-42505:-1:exon

position:42121:-1
position: 42121
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:41106-41193:-1:exon

position:41106:-1
position: 41106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41193:-1
position: 41193
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:40027-40091:-1:exon

position:40027:-1
position: 40027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40091:-1
position: 40091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:39732-39938:-1:exon

position:39732:-1
position: 39732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39938:-1
position: 39938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:38490-38552:-1:exon

position:38490:-1
position: 38490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:38552:-1
position: 38552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:37806-37833:-1:exon

position:37806:-1
position: 37806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:37833:-1
position: 37833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:36360-36859:-1:exon

position:36360:-1
position: 36360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36859:-1
position: 36859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:35897-35946:-1:exon

position:35897:-1
position: 35897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35946:-1
position: 35946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:35104-35204:-1:exon

position:35104:-1
position: 35104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35204:-1
position: 35204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:34265-34414:-1:exon

position:34265:-1
position: 34265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34414:-1
position: 34414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:34065-34165:-1:exon

position:34065:-1
position: 34065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34165:-1
position: 34165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:33017-33156:-1:exon

position:33017:-1
position: 33017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33156:-1
position: 33156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:32171-32259:-1:exon

position:32171:-1
position: 32171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32259:-1
position: 32259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:31502-31638:-1:exon

position:31502:-1
position: 31502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31638:-1
position: 31638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:30575-30868:-1:exon

position:30575:-1
position: 30575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30868:-1
position: 30868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:29603-29740:-1:exon

position:29603:-1
position: 29603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29740:-1
position: 29740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:28782-28821:-1:exon

position:28782:-1
position: 28782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28821:-1
position: 28821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:27847-27968:-1:exon

position:27847:-1
position: 27847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27968:-1
position: 27968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:27015-27127:-1:exon

position:27015:-1
position: 27015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27127:-1
position: 27127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:26753-26819:-1:exon

position:26753:-1
position: 26753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26819:-1
position: 26819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:26144-26537:-1:exon

position:26537:-1
position: 26537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121060288
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060288
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: scaffold attachment factor B1-like
translation: MAESQPAAGQGEPVAPGGPGGPSSEPETRRLSELRVIDLRAELRRRNLDSGGNKSVLTERLRKAIEEEGGNPDEIPVVSEIVNKKTSKRSSKGRRPDEEGIEDNGLEEDSGDGQEDIEASLDNLQDIDMMDISVLDEAEIDNGNAVDCGEDCSADNILDSLSDSKENADAETKELPDQPTAYAVEAEDVGNSFNAASSDLTVIKETEELPLEPENEKILDILGETCKSELLNEETSEVEQPHAQEASNVVPGKRLAEEEDVLAAAQLEEDALDLDSKSAQAMSRKEAKRLVVAKGERSEQTIEEEKLDSESLVLETLSDQSSKRFQGLEASSGETAEXKGAGPEGKDSKEDAKKTEDKANSEESPATRESSTSEGGDQKKSPVEEDRDTKIISRDEKGRAGSGSGRNLWVSGLSSSTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSEEATKCISHLHRTELHGKMISVEKAKNEPAGKKPADKKEGEARKEKDRHHSADCKSEKSVGIKKEEKAGQKDDAKKSEKDGKDEGKEKDDQKAGPSDRSRASKSASRGTERTVVMDKSKGEPVISVKTSASKERSTKSQDRKSESKEKQDILSFDKIKEQRERERQRQREREIRETERRRERERREREQRLQAIHERDERQRLQRERERLEFQRQRLDRERLERERLERERMHIEQERRREQERIQREREELRRQQEQLRYEQERRSAMRRPYDPDGRRDDPYWPETKRMAMDDRYHSEFGRQDRFHDFDHRDRGRYQDHSLDRREGSRGIPDRDGQHYPDERHGGPDRHSRDSRDSWGGYGSDRRMNEGRGIPPQTRDGRDWGDHGRKLEGHQDRSWQGNVDGGMMGRDHERWQGGDRSMPGQSGPGHVMNRGGIPGRGGFTQGGNQSQIMQSGGIQGGFAGQERTNRLTETRFTRRY
SIO_010081: LOC121060288
subclass of: SO_0000673
so part of: LOC121060288
location: complement(join(26411..26537,26753..26819,27015..27127,27847..27968,28782..28821,29603..29740,30575..30868,31502..31638,32171..32259,33017..33156,34065..34165,34265..34414,35104..35204,35897..35946,36360..36859,37806..37833,38490..38552,39732..39938,40027..40091,41106..41193,42121..42309))
location: region:26411-42309:-1
so has part: feature:42121-42309:-1:exon
so has part: feature:41106-41193:-1:exon
so has part: feature:40027-40091:-1:exon
so has part: feature:39732-39938:-1:exon
so has part: feature:38490-38552:-1:exon
so has part: feature:37806-37833:-1:exon
so has part: feature:36360-36859:-1:exon
so has part: feature:35897-35946:-1:exon
so has part: feature:35104-35204:-1:exon
so has part: feature:34265-34414:-1:exon
so has part: feature:34065-34165:-1:exon
so has part: feature:33017-33156:-1:exon
so has part: feature:32171-32259:-1:exon
so has part: feature:31502-31638:-1:exon
so has part: feature:30575-30868:-1:exon
so has part: feature:29603-29740:-1:exon
so has part: feature:28782-28821:-1:exon
so has part: feature:27847-27968:-1:exon
so has part: feature:27015-27127:-1:exon
so has part: feature:26753-26819:-1:exon
so has part: feature:26411-26537:-1:exon

XP_040393894.1
type: Protein
SIO_000068: ncbiprotein

position:26411:-1
position: 26411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42309:-1
position: 42309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42121-42309:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:41106-41193:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:40027-40091:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:39732-39938:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:38490-38552:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:37806-37833:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:36360-36859:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:35897-35946:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:35104-35204:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:34265-34414:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:34065-34165:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:33017-33156:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:32171-32259:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:31502-31638:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:30575-30868:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:29603-29740:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:28782-28821:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:27847-27968:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:27015-27127:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:26753-26819:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:26411-26537:-1:exon

LOC121060289
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: LOC121060289
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 42686..59837
location: region:42686-59837:1
so has part: feature:42686-59837:1:exon
subclass of: SO_0000010

121060289
type: Gene
SIO_000068: ncbigene

position:42686:1
position: 42686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59837:1
position: 59837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42686-59837:1:exon

LOC121060289
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060289
product: scaffold attachment factor B1-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537961.1
SIO_010081: LOC121060289
subclass of: SO_0000673
so part of: LOC121060289
location: join(42686..43038,43841..43925,45432..45496,45582..45788,46480..46542,47201..47228,48127..48624,49047..49096,51346..51446,52454..52603,52696..52772,53710..53849,54186..54277,54660..54766,55371..55664,55950..56087,56644..56686,58040..58161,58898..59010,59125..59176,59476..59837)
location: region:42686-59837:1
so has part: feature:42686-43038:1:exon
so has part: feature:43841-43925:1:exon
so has part: feature:45432-45496:1:exon
so has part: feature:45582-45788:1:exon
so has part: feature:46480-46542:1:exon
so has part: feature:47201-47228:1:exon
so has part: feature:48127-48624:1:exon
so has part: feature:49047-49096:1:exon
so has part: feature:51346-51446:1:exon
so has part: feature:52454-52603:1:exon
so has part: feature:52696-52772:1:exon
so has part: feature:53710-53849:1:exon
so has part: feature:54186-54277:1:exon
so has part: feature:54660-54766:1:exon
so has part: feature:55371-55664:1:exon
so has part: feature:55950-56087:1:exon
so has part: feature:56644-56686:1:exon
so has part: feature:58040-58161:1:exon
so has part: feature:58898-59010:1:exon
so has part: feature:59125-59176:1:exon
so has part: feature:59476-59837:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:42686-43038:1:exon

position:43038:1
position: 43038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:43841-43925:1:exon

position:43841:1
position: 43841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43925:1
position: 43925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:45432-45496:1:exon

position:45432:1
position: 45432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45496:1
position: 45496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:45582-45788:1:exon

position:45582:1
position: 45582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45788:1
position: 45788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:46480-46542:1:exon

position:46480:1
position: 46480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:46542:1
position: 46542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:47201-47228:1:exon

position:47201:1
position: 47201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47228:1
position: 47228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:48127-48624:1:exon

position:48127:1
position: 48127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48624:1
position: 48624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:49047-49096:1:exon

position:49047:1
position: 49047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49096:1
position: 49096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:51346-51446:1:exon

position:51346:1
position: 51346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51446:1
position: 51446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:52454-52603:1:exon

position:52454:1
position: 52454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52603:1
position: 52603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:52696-52772:1:exon

position:52696:1
position: 52696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52772:1
position: 52772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:53710-53849:1:exon

position:53710:1
position: 53710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53849:1
position: 53849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:54186-54277:1:exon

position:54186:1
position: 54186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54277:1
position: 54277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:54660-54766:1:exon

position:54660:1
position: 54660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54766:1
position: 54766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:55371-55664:1:exon

position:55371:1
position: 55371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55664:1
position: 55664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:55950-56087:1:exon

position:55950:1
position: 55950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56087:1
position: 56087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:56644-56686:1:exon

position:56644:1
position: 56644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56686:1
position: 56686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:58040-58161:1:exon

position:58040:1
position: 58040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58161:1
position: 58161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:58898-59010:1:exon

position:58898:1
position: 58898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59010:1
position: 59010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:59125-59176:1:exon

position:59125:1
position: 59125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59176:1
position: 59176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:59476-59837:1:exon

position:59476:1
position: 59476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121060289
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060289
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: scaffold attachment factor B1-like
translation: MAESQPAAGLGDLTTLGGAPALGSEPETRRLSELRVIDLRAELKRRNLDSGGNKSVLTERLRKAIEDEGGDPDEIPVASELTKRMPKRTSKGRKPEEEGAEDNGLEENSRDGQEDIEASLDTLQDIDMMDISVLDEAEIDNSSAVDCGEDYSPDNILDSLSDNKDNVDAEMKELPDQLTENEEDYDEIENNVDSSSSDLIEMKKMEKLHSEPENEKILDILGETCKSELLNEETSEVEQPHAQEASNVVPGRXLAEEEDVLAAAQLEEDALDLDSKSAQAVSRKEAKRLVVAKGERSEQTIEEEKLDSESLVLETLSDQSSKRFQGLEASSGETAEKGAGPEGKDSKEDAKKTEDKANSEESPATRESSTSEGGDQKKSPVEEDRDTKIISKDEKGCTASSSGRNFWVSGLASTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCITHLHKTELHGKIISVEKAKNEPAGKKPTEKKENEVKKETVSERPGSIKRDEKSDQKDDSKKTEDKDEKERKDKDELKPGSSDQPKTNKSGSKGTERTVVMDKSKGEPVISVKTSTASKDRSIKSQDRKSESRERQGIVPFDKIKAQRKMREAEQRRTRERRERQQHLQTIREREERERLEIARERLEIERQRLERERMERERLERERMHIEHERRREQDRIQREREELRRQHEQLRYEQERRSAMRRPYDIDGRRDDPYWPEAKRMAMNDRYHSDFGRQDRFHDFDHRDRGRYQDHSIDRRDGSRTMMGDRDGQHYPDERHGGPDRHSRDSRESWGSYGSDRRMSESRGIPPQSRDGRDWGDHGRKFEGHQDRSWQSSVDGGMIGRDHERWQGGGRGRPGHVMHRGGMSGRGGFIQGGNQSQMMHGGGVQGEGFAGQERASRPNDPRFNRRY
SIO_010081: LOC121060289
subclass of: SO_0000673
so part of: LOC121060289
location: join(42850..43038,43841..43925,45432..45496,45582..45788,46480..46542,47201..47228,48127..48624,49047..49096,51346..51446,52454..52603,52696..52772,53710..53849,54186..54277,54660..54766,55371..55664,55950..56087,56644..56686,58040..58161,58898..59010,59125..59176,59476..59605)
location: region:42850-59605:1
so has part: feature:42850-43038:1:exon
so has part: feature:43841-43925:1:exon
so has part: feature:45432-45496:1:exon
so has part: feature:45582-45788:1:exon
so has part: feature:46480-46542:1:exon
so has part: feature:47201-47228:1:exon
so has part: feature:48127-48624:1:exon
so has part: feature:49047-49096:1:exon
so has part: feature:51346-51446:1:exon
so has part: feature:52454-52603:1:exon
so has part: feature:52696-52772:1:exon
so has part: feature:53710-53849:1:exon
so has part: feature:54186-54277:1:exon
so has part: feature:54660-54766:1:exon
so has part: feature:55371-55664:1:exon
so has part: feature:55950-56087:1:exon
so has part: feature:56644-56686:1:exon
so has part: feature:58040-58161:1:exon
so has part: feature:58898-59010:1:exon
so has part: feature:59125-59176:1:exon
so has part: feature:59476-59605:1:exon

XP_040393895.1
type: Protein
SIO_000068: ncbiprotein

position:42850:1
position: 42850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:59605:1
position: 59605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42850-43038:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:43841-43925:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:45432-45496:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:45582-45788:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:46480-46542:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:47201-47228:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:48127-48624:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:49047-49096:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:51346-51446:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:52454-52603:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:52696-52772:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:53710-53849:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:54186-54277:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:54660-54766:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:55371-55664:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:55950-56087:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:56644-56686:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:58040-58161:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:58898-59010:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:59125-59176:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:59476-59605:1:exon

MICOS13
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: MICOS13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(60977..66796)
location: region:60977-66796:-1
so has part: feature:60977-66796:-1:exon
subclass of: SO_0000010

121060291
type: Gene
SIO_000068: ncbigene

position:60977:-1
position: 60977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:66796:-1
position: 66796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60977-66796:-1:exon

MICOS13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: MICOS13
product: mitochondrial contact site and cristae organizing system subunit 13
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537966.1
SIO_010081: MICOS13
subclass of: SO_0000673
so part of: MICOS13
location: complement(join(60977..61195,62259..62310,63053..63209,66669..66796))
location: region:60977-66796:-1
so has part: feature:66669-66796:-1:exon
so has part: feature:63053-63209:-1:exon
so has part: feature:62259-62310:-1:exon
so has part: feature:60977-61195:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:66669-66796:-1:exon

position:66669:-1
position: 66669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:63053-63209:-1:exon

position:63053:-1
position: 63053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:63209:-1
position: 63209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:62259-62310:-1:exon

position:62259:-1
position: 62259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:62310:-1
position: 62310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:60977-61195:-1:exon

position:61195:-1
position: 61195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MICOS13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: MICOS13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: MICOS complex subunit MIC13
translation: MAARLLPAARFIIKGSLAGAAVYVAYDQGLLGSGAEGAEALKKAQTVLPPAIKEWTSYVGWELPPTPKIDFSPSDSWNKGVQTVMSALSVAPTRACEYTLEGWKYMKDLVK
SIO_010081: MICOS13
subclass of: SO_0000673
so part of: MICOS13
location: complement(join(61098..61195,62259..62310,63053..63209,66669..66697))
location: region:61098-66697:-1
so has part: feature:66669-66697:-1:exon
so has part: feature:63053-63209:-1:exon
so has part: feature:62259-62310:-1:exon
so has part: feature:61098-61195:-1:exon

XP_040393900.1
type: Protein
SIO_000068: ncbiprotein

position:61098:-1
position: 61098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:66697:-1
position: 66697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66669-66697:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:63053-63209:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:62259-62310:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:61098-61195:-1:exon

HSD11B1L
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: HSD11B1L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 63082..76342
location: region:63082-76342:1
so has part: feature:63082-76342:1:exon
subclass of: SO_0000010

121060290
type: Gene
SIO_000068: ncbigene

position:63082:1
position: 63082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:76342:1
position: 76342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63082-76342:1:exon

HSD11B1L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: HSD11B1L
product: hydroxysteroid 11-beta dehydrogenase 1 like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_040537963.1
SIO_010081: HSD11B1L
subclass of: SO_0000673
so part of: HSD11B1L
location: join(63082..63207,66667..66839,68952..69125,69768..69898,70921..71032,72736..72827,73448..73541,74128..74293,74585..76342)
location: region:63082-76342:1
so has part: feature:63082-63207:1:exon
so has part: feature:66667-66839:1:exon
so has part: feature:68952-69125:1:exon
so has part: feature:69768-69898:1:exon
so has part: feature:70921-71032:1:exon
so has part: feature:72736-72827:1:exon
so has part: feature:73448-73541:1:exon
so has part: feature:74128-74293:1:exon
so has part: feature:74585-76342:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:63082-63207:1:exon

position:63207:1
position: 63207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:66667-66839:1:exon

position:66667:1
position: 66667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66839:1
position: 66839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:68952-69125:1:exon

position:68952:1
position: 68952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69125:1
position: 69125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:69768-69898:1:exon

position:69768:1
position: 69768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69898:1
position: 69898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:70921-71032:1:exon

position:70921:1
position: 70921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:71032:1
position: 71032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:72736-72827:1:exon

position:72736:1
position: 72736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:72827:1
position: 72827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:73448-73541:1:exon

position:73448:1
position: 73448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:73541:1
position: 73541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:74128-74293:1:exon

position:74128:1
position: 74128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74293:1
position: 74293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:74585-76342:1:exon

position:74585:1
position: 74585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HSD11B1L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: HSD11B1L
product: hydroxysteroid 11-beta dehydrogenase 1 like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_040537964.1
SIO_010081: HSD11B1L
subclass of: SO_0000673
so part of: HSD11B1L
location: join(66673..66839,68952..69008,69768..69898,70921..71032,72736..72827,73448..73541,74128..74293,74585..76342)
location: region:66673-76342:1
so has part: feature:66673-66839:1:exon
so has part: feature:68952-69008:1:exon
so has part: feature:69768-69898:1:exon
so has part: feature:70921-71032:1:exon
so has part: feature:72736-72827:1:exon
so has part: feature:73448-73541:1:exon
so has part: feature:74128-74293:1:exon
so has part: feature:74585-76342:1:exon

position:66673:1
position: 66673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66673-66839:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:68952-69008:1:exon

position:69008:1
position: 69008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:69768-69898:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:70921-71032:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:72736-72827:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:73448-73541:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:74128-74293:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:74585-76342:1:exon

HSD11B1L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: HSD11B1L
product: hydroxysteroid 11-beta dehydrogenase 1 like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_040537962.1
SIO_010081: HSD11B1L
subclass of: SO_0000673
so part of: HSD11B1L
location: join(66858..67330,68952..69125,69768..69898,70921..71032,72736..72827,73448..73541,74128..74293,74585..76342)
location: region:66858-76342:1
so has part: feature:66858-67330:1:exon
so has part: feature:68952-69125:1:exon
so has part: feature:69768-69898:1:exon
so has part: feature:70921-71032:1:exon
so has part: feature:72736-72827:1:exon
so has part: feature:73448-73541:1:exon
so has part: feature:74128-74293:1:exon
so has part: feature:74585-76342:1:exon

position:66858:1
position: 66858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66858-67330:1:exon

position:67330:1
position: 67330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:68952-69125:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:69768-69898:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:70921-71032:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:72736-72827:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:73448-73541:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:74128-74293:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:74585-76342:1:exon

HSD11B1L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: HSD11B1L
product: hydroxysteroid 11-beta dehydrogenase 1 like, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_040537965.1
SIO_010081: HSD11B1L
subclass of: SO_0000673
so part of: HSD11B1L
location: join(66858..67330,69768..69898,70921..71032,72736..72827,73448..73541,74128..74293,74585..76342)
location: region:66858-76342:1
so has part: feature:66858-67330:1:exon
so has part: feature:69768-69898:1:exon
so has part: feature:70921-71032:1:exon
so has part: feature:72736-72827:1:exon
so has part: feature:73448-73541:1:exon
so has part: feature:74128-74293:1:exon
so has part: feature:74585-76342:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:66858-67330:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:69768-69898:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:70921-71032:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:72736-72827:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:73448-73541:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:74128-74293:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:74585-76342:1:exon

HSD11B1L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: HSD11B1L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: hydroxysteroid 11-beta-dehydrogenase 1-like protein isoform X1
translation: MRPLGKVLCATGIIAVLLAFFWKDTFNPESLSGARVLLTGASAGIGEQMAYHYARFGAEILLTARREAVLQKVMEKCLTLGAKKTLYIPADMSSPSEPEKVVQFAVQKLGGLDYLVLNHIGISPFQMWNGDVEYTRWLMQVNFFSYVALATAALPTLEKNKGSLVVVSSLTGKIPTPFTTSYSATKFALDGFFSSLRHELIMQKRNISVTLCILGLIDTDTALEKTRGKVYLTASPAAEAALAIIQAGATKVQEVFYPWWLQHTCSLWVLFPCHRNQVLQSLYNYSSP
SIO_010081: HSD11B1L
subclass of: SO_0000673
so part of: HSD11B1L
location: join(69041..69125,69768..69898,70921..71032,72736..72827,73448..73541,74128..74293,74585..74771)
location: region:69041-74771:1
so has part: feature:69041-69125:1:exon
so has part: feature:69768-69898:1:exon
so has part: feature:70921-71032:1:exon
so has part: feature:72736-72827:1:exon
so has part: feature:73448-73541:1:exon
so has part: feature:74128-74293:1:exon
so has part: feature:74585-74771:1:exon

XP_040393896.1
type: Protein
SIO_000068: ncbiprotein

position:69041:1
position: 69041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74771:1
position: 74771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69041-69125:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:69768-69898:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:70921-71032:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:72736-72827:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:73448-73541:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:74128-74293:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:74585-74771:1:exon

HSD11B1L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: HSD11B1L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: hydroxysteroid 11-beta-dehydrogenase 1-like protein isoform X1
translation: MRPLGKVLCATGIIAVLLAFFWKDTFNPESLSGARVLLTGASAGIGEQMAYHYARFGAEILLTARREAVLQKVMEKCLTLGAKKTLYIPADMSSPSEPEKVVQFAVQKLGGLDYLVLNHIGISPFQMWNGDVEYTRWLMQVNFFSYVALATAALPTLEKNKGSLVVVSSLTGKIPTPFTTSYSATKFALDGFFSSLRHELIMQKRNISVTLCILGLIDTDTALEKTRGKVYLTASPAAEAALAIIQAGATKVQEVFYPWWLQHTCSLWVLFPCHRNQVLQSLYNYSSP
SIO_010081: HSD11B1L
subclass of: SO_0000673
so part of: HSD11B1L
location: join(69041..69125,69768..69898,70921..71032,72736..72827,73448..73541,74128..74293,74585..74771)
location: region:69041-74771:1
so has part: feature:69041-69125:1:exon
so has part: feature:69768-69898:1:exon
so has part: feature:70921-71032:1:exon
so has part: feature:72736-72827:1:exon
so has part: feature:73448-73541:1:exon
so has part: feature:74128-74293:1:exon
so has part: feature:74585-74771:1:exon

XP_040393897.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:69041-69125:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:69768-69898:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:70921-71032:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:72736-72827:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:73448-73541:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:74128-74293:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:74585-74771:1:exon

HSD11B1L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: HSD11B1L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: hydroxysteroid 11-beta-dehydrogenase 1-like protein isoform X2
translation: MAYHYARFGAEILLTARREAVLQKVMEKCLTLGAKKTLYIPADMSSPSEPEKVVQFAVQKLGGLDYLVLNHIGISPFQMWNGDVEYTRWLMQVNFFSYVALATAALPTLEKNKGSLVVVSSLTGKIPTPFTTSYSATKFALDGFFSSLRHELIMQKRNISVTLCILGLIDTDTALEKTRGKVYLTASPAAEAALAIIQAGATKVQEVFYPWWLQHTCSLWVLFPCHRNQVLQSLYNYSSP
SIO_010081: HSD11B1L
subclass of: SO_0000673
so part of: HSD11B1L
location: join(69827..69898,70921..71032,72736..72827,73448..73541,74128..74293,74585..74771)
location: region:69827-74771:1
so has part: feature:69827-69898:1:exon
so has part: feature:70921-71032:1:exon
so has part: feature:72736-72827:1:exon
so has part: feature:73448-73541:1:exon
so has part: feature:74128-74293:1:exon
so has part: feature:74585-74771:1:exon

XP_040393898.1
type: Protein
SIO_000068: ncbiprotein

position:69827:1
position: 69827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69827-69898:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:70921-71032:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:72736-72827:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:73448-73541:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:74128-74293:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:74585-74771:1:exon

HSD11B1L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: HSD11B1L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: hydroxysteroid 11-beta-dehydrogenase 1-like protein isoform X2
translation: MAYHYARFGAEILLTARREAVLQKVMEKCLTLGAKKTLYIPADMSSPSEPEKVVQFAVQKLGGLDYLVLNHIGISPFQMWNGDVEYTRWLMQVNFFSYVALATAALPTLEKNKGSLVVVSSLTGKIPTPFTTSYSATKFALDGFFSSLRHELIMQKRNISVTLCILGLIDTDTALEKTRGKVYLTASPAAEAALAIIQAGATKVQEVFYPWWLQHTCSLWVLFPCHRNQVLQSLYNYSSP
SIO_010081: HSD11B1L
subclass of: SO_0000673
so part of: HSD11B1L
location: join(69827..69898,70921..71032,72736..72827,73448..73541,74128..74293,74585..74771)
location: region:69827-74771:1
so has part: feature:69827-69898:1:exon
so has part: feature:70921-71032:1:exon
so has part: feature:72736-72827:1:exon
so has part: feature:73448-73541:1:exon
so has part: feature:74128-74293:1:exon
so has part: feature:74585-74771:1:exon

XP_040393899.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:69827-69898:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:70921-71032:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:72736-72827:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:73448-73541:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:74128-74293:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:74585-74771:1:exon

CELF5
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: CELF5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(78118..118033)
location: region:78118-118033:-1
so has part: feature:78118-118033:-1:exon
subclass of: SO_0000010

121060251
type: Gene
SIO_000068: ncbigene

position:78118:-1
position: 78118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:118033:-1
position: 118033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:78118-118033:-1:exon

CELF5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CELF5
product: CUGBP Elav-like family member 5, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 long SRA reads, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_040537879.1
SIO_010081: CELF5
subclass of: SO_0000673
so part of: CELF5
location: complement(join(78118..79748,81658..81822,81934..82077,83054..83137,83221..83283,83791..83937,84626..84770,88631..88777,89920..89999,99208..99256,111206..111288,117752..118033))
location: region:78118-118033:-1
so has part: feature:117752-118033:-1:exon
so has part: feature:111206-111288:-1:exon
so has part: feature:99208-99256:-1:exon
so has part: feature:89920-89999:-1:exon
so has part: feature:88631-88777:-1:exon
so has part: feature:84626-84770:-1:exon
so has part: feature:83791-83937:-1:exon
so has part: feature:83221-83283:-1:exon
so has part: feature:83054-83137:-1:exon
so has part: feature:81934-82077:-1:exon
so has part: feature:81658-81822:-1:exon
so has part: feature:78118-79748:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:117752-118033:-1:exon

position:117752:-1
position: 117752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:111206-111288:-1:exon

position:111206:-1
position: 111206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:111288:-1
position: 111288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:99208-99256:-1:exon

position:99208:-1
position: 99208
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:99256:-1
position: 99256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:89920-89999:-1:exon

position:89920:-1
position: 89920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:89999:-1
position: 89999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:88631-88777:-1:exon

position:88631:-1
position: 88631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:88777:-1
position: 88777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:84626-84770:-1:exon

position:84626:-1
position: 84626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:84770:-1
position: 84770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:83791-83937:-1:exon

position:83791:-1
position: 83791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:83937:-1
position: 83937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:83221-83283:-1:exon

position:83221:-1
position: 83221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:83283:-1
position: 83283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:83054-83137:-1:exon

position:83054:-1
position: 83054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:83137:-1
position: 83137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:81934-82077:-1:exon

position:81934:-1
position: 81934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:82077:-1
position: 82077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:81658-81822:-1:exon

position:81658:-1
position: 81658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81822:-1
position: 81822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:78118-79748:-1:exon

position:79748:-1
position: 79748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CELF5
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 8869
gene: CELF5
product: CUGBP Elav-like family member 5, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 long SRA reads, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_005814760.1
SIO_010081: CELF5
so part of: CELF5
location: complement(join(78118..79748,79892..80932,81658..81822,81934..82077,83054..83137,83221..83283,83791..83937,84626..84770,89920..89999,90594..90722,99208..99256,111206..111288,117752..118033))
location: region:78118-118033:-1
so has part: feature:117752-118033:-1:exon
so has part: feature:111206-111288:-1:exon
so has part: feature:99208-99256:-1:exon
so has part: feature:90594-90722:-1:exon
so has part: feature:89920-89999:-1:exon
so has part: feature:84626-84770:-1:exon
so has part: feature:83791-83937:-1:exon
so has part: feature:83221-83283:-1:exon
so has part: feature:83054-83137:-1:exon
so has part: feature:81934-82077:-1:exon
so has part: feature:81658-81822:-1:exon
so has part: feature:79892-80932:-1:exon
so has part: feature:78118-79748:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:117752-118033:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:111206-111288:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:99208-99256:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:90594-90722:-1:exon

position:90594:-1
position: 90594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:90722:-1
position: 90722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:89920-89999:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:84626-84770:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:83791-83937:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:83221-83283:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:83054-83137:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:81934-82077:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:81658-81822:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:79892-80932:-1:exon

position:79892:-1
position: 79892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:80932:-1
position: 80932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:78118-79748:-1:exon

CELF5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CELF5
product: CUGBP Elav-like family member 5, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 long SRA reads, 37 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_040537878.1
SIO_010081: CELF5
subclass of: SO_0000673
so part of: CELF5
location: complement(join(78118..79748,81658..81822,81934..82077,83054..83137,83221..83283,83791..83937,84626..84770,88631..88777,89920..89999,90594..90722,99208..99256,111206..111288,117752..118033))
location: region:78118-118033:-1
so has part: feature:117752-118033:-1:exon
so has part: feature:111206-111288:-1:exon
so has part: feature:99208-99256:-1:exon
so has part: feature:90594-90722:-1:exon
so has part: feature:89920-89999:-1:exon
so has part: feature:88631-88777:-1:exon
so has part: feature:84626-84770:-1:exon
so has part: feature:83791-83937:-1:exon
so has part: feature:83221-83283:-1:exon
so has part: feature:83054-83137:-1:exon
so has part: feature:81934-82077:-1:exon
so has part: feature:81658-81822:-1:exon
so has part: feature:78118-79748:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:117752-118033:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:111206-111288:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:99208-99256:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:90594-90722:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:89920-89999:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:88631-88777:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:84626-84770:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:83791-83937:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:83221-83283:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:83054-83137:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:81934-82077:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:81658-81822:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:78118-79748:-1:exon

CELF5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CELF5
product: CUGBP Elav-like family member 5, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 long SRA reads, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_040537880.1
SIO_010081: CELF5
subclass of: SO_0000673
so part of: CELF5
location: complement(join(78118..79748,81658..81822,81934..82077,83054..83137,83221..83283,83791..83937,84626..84770,89920..89999,90594..90722,99205..99256,111206..111288,117752..118033))
location: region:78118-118033:-1
so has part: feature:117752-118033:-1:exon
so has part: feature:111206-111288:-1:exon
so has part: feature:99205-99256:-1:exon
so has part: feature:90594-90722:-1:exon
so has part: feature:89920-89999:-1:exon
so has part: feature:84626-84770:-1:exon
so has part: feature:83791-83937:-1:exon
so has part: feature:83221-83283:-1:exon
so has part: feature:83054-83137:-1:exon
so has part: feature:81934-82077:-1:exon
so has part: feature:81658-81822:-1:exon
so has part: feature:78118-79748:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:117752-118033:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:111206-111288:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:99205-99256:-1:exon

position:99205:-1
position: 99205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:90594-90722:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:89920-89999:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:84626-84770:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:83791-83937:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:83221-83283:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:83054-83137:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:81934-82077:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:81658-81822:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:78118-79748:-1:exon

CELF5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CELF5
product: CUGBP Elav-like family member 5, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 long SRA reads, 28 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_040537876.1
SIO_010081: CELF5
subclass of: SO_0000673
so part of: CELF5
location: complement(join(78118..79718,81658..81822,81934..82077,83054..83137,83221..83283,83791..83937,84626..84770,88631..88777,89920..89999,90594..90722,99205..99256,111206..111288,117752..118033))
location: region:78118-118033:-1
so has part: feature:117752-118033:-1:exon
so has part: feature:111206-111288:-1:exon
so has part: feature:99205-99256:-1:exon
so has part: feature:90594-90722:-1:exon
so has part: feature:89920-89999:-1:exon
so has part: feature:88631-88777:-1:exon
so has part: feature:84626-84770:-1:exon
so has part: feature:83791-83937:-1:exon
so has part: feature:83221-83283:-1:exon
so has part: feature:83054-83137:-1:exon
so has part: feature:81934-82077:-1:exon
so has part: feature:81658-81822:-1:exon
so has part: feature:78118-79718:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:117752-118033:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:111206-111288:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:99205-99256:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:90594-90722:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:89920-89999:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:88631-88777:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:84626-84770:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:83791-83937:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:83221-83283:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:83054-83137:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:81934-82077:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:81658-81822:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:78118-79718:-1:exon

position:79718:-1
position: 79718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CELF5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CELF5
product: CUGBP Elav-like family member 5, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 long SRA reads, 28 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_040537875.1
SIO_010081: CELF5
subclass of: SO_0000673
so part of: CELF5
location: complement(join(78118..79748,81658..81822,81934..82077,83054..83137,83221..83283,83791..83937,84626..84770,88631..88777,89920..89999,90594..90722,99205..99256,111206..111288,117752..118033))
location: region:78118-118033:-1
so has part: feature:117752-118033:-1:exon
so has part: feature:111206-111288:-1:exon
so has part: feature:99205-99256:-1:exon
so has part: feature:90594-90722:-1:exon
so has part: feature:89920-89999:-1:exon
so has part: feature:88631-88777:-1:exon
so has part: feature:84626-84770:-1:exon
so has part: feature:83791-83937:-1:exon
so has part: feature:83221-83283:-1:exon
so has part: feature:83054-83137:-1:exon
so has part: feature:81934-82077:-1:exon
so has part: feature:81658-81822:-1:exon
so has part: feature:78118-79748:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:117752-118033:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:111206-111288:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:99205-99256:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:90594-90722:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:89920-89999:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:88631-88777:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:84626-84770:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:83791-83937:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:83221-83283:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:83054-83137:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:81934-82077:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:81658-81822:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:78118-79748:-1:exon

CELF5
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 8869
gene: CELF5
product: CUGBP Elav-like family member 5, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 long SRA reads, 28 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_005814759.1
SIO_010081: CELF5
so part of: CELF5
location: complement(join(78118..79748,79892..80059,81658..81822,81934..82077,83054..83137,83221..83283,83791..83937,84626..84770,88631..88777,89920..89999,90594..90722,99205..99256,111206..111288,117752..118033))
location: region:78118-118033:-1
so has part: feature:117752-118033:-1:exon
so has part: feature:111206-111288:-1:exon
so has part: feature:99205-99256:-1:exon
so has part: feature:90594-90722:-1:exon
so has part: feature:89920-89999:-1:exon
so has part: feature:88631-88777:-1:exon
so has part: feature:84626-84770:-1:exon
so has part: feature:83791-83937:-1:exon
so has part: feature:83221-83283:-1:exon
so has part: feature:83054-83137:-1:exon
so has part: feature:81934-82077:-1:exon
so has part: feature:81658-81822:-1:exon
so has part: feature:79892-80059:-1:exon
so has part: feature:78118-79748:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:117752-118033:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:111206-111288:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:99205-99256:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:90594-90722:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:89920-89999:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:88631-88777:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:84626-84770:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:83791-83937:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:83221-83283:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:83054-83137:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:81934-82077:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:81658-81822:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:79892-80059:-1:exon

position:80059:-1
position: 80059
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:78118-79748:-1:exon

CELF5
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 8869
gene: CELF5
product: CUGBP Elav-like family member 5, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 long SRA reads, 28 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_005814758.1
SIO_010081: CELF5
so part of: CELF5
location: complement(join(78118..79748,79892..80932,81658..81822,81934..82077,83054..83137,83221..83283,83791..83937,84626..84770,88631..88777,89920..89999,90594..90722,99205..99256,111206..111288,117752..118033))
location: region:78118-118033:-1
so has part: feature:117752-118033:-1:exon
so has part: feature:111206-111288:-1:exon
so has part: feature:99205-99256:-1:exon
so has part: feature:90594-90722:-1:exon
so has part: feature:89920-89999:-1:exon
so has part: feature:88631-88777:-1:exon
so has part: feature:84626-84770:-1:exon
so has part: feature:83791-83937:-1:exon
so has part: feature:83221-83283:-1:exon
so has part: feature:83054-83137:-1:exon
so has part: feature:81934-82077:-1:exon
so has part: feature:81658-81822:-1:exon
so has part: feature:79892-80932:-1:exon
so has part: feature:78118-79748:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:117752-118033:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:111206-111288:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:99205-99256:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:90594-90722:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:89920-89999:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:88631-88777:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:84626-84770:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:83791-83937:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:83221-83283:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:83054-83137:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:81934-82077:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:81658-81822:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:79892-80932:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:78118-79748:-1:exon

CELF5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CELF5
product: CUGBP Elav-like family member 5, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 long SRA reads, 28 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_040537877.1
SIO_010081: CELF5
subclass of: SO_0000673
so part of: CELF5
location: complement(join(80946..81176,81658..81822,81934..82077,83054..83137,83221..83283,83791..83937,84626..84770,88631..88777,89920..89999,90594..90722,99205..99256,111206..111288,117752..118033))
location: region:80946-118033:-1
so has part: feature:117752-118033:-1:exon
so has part: feature:111206-111288:-1:exon
so has part: feature:99205-99256:-1:exon
so has part: feature:90594-90722:-1:exon
so has part: feature:89920-89999:-1:exon
so has part: feature:88631-88777:-1:exon
so has part: feature:84626-84770:-1:exon
so has part: feature:83791-83937:-1:exon
so has part: feature:83221-83283:-1:exon
so has part: feature:83054-83137:-1:exon
so has part: feature:81934-82077:-1:exon
so has part: feature:81658-81822:-1:exon
so has part: feature:80946-81176:-1:exon

position:80946:-1
position: 80946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:117752-118033:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:111206-111288:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:99205-99256:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:90594-90722:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:89920-89999:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:88631-88777:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:84626-84770:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:83791-83937:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:83221-83283:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:83054-83137:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:81934-82077:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:81658-81822:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:80946-81176:-1:exon

position:81176:-1
position: 81176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CELF5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CELF5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CUGBP Elav-like family member 5 isoform X3
translation: MARLREGEARRQPPPLPPAPPPPRRASPMSSSGGAEPPAQPGSMKDLDAIKLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGIFTPSLTLPFSPYSAYAQALMQQQTTVLSTSHGSYVSPGVAFSPCHIQQIGAVSLNGLPATPVAQTSGLHSPPLLGTTGVPGLVAPISNGFTSVVPFPNGHPTLETVYTSGFVPYSAQSPSVAETLHPAFTGVQQYAAVYPTTSITPIAQSIPQPPPILQQQQREGPEGCNLFIYHLPQEFGDNELMQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLKVQLKRPKDANHPY
SIO_010081: CELF5
subclass of: SO_0000673
so part of: CELF5
location: complement(join(81695..81822,81934..82077,83054..83137,83221..83283,83791..83937,84626..84770,88631..88777,89920..89999,99208..99256,111206..111288,117752..118025))
location: region:81695-118025:-1
so has part: feature:117752-118025:-1:exon
so has part: feature:111206-111288:-1:exon
so has part: feature:99208-99256:-1:exon
so has part: feature:89920-89999:-1:exon
so has part: feature:88631-88777:-1:exon
so has part: feature:84626-84770:-1:exon
so has part: feature:83791-83937:-1:exon
so has part: feature:83221-83283:-1:exon
so has part: feature:83054-83137:-1:exon
so has part: feature:81934-82077:-1:exon
so has part: feature:81695-81822:-1:exon

XP_040393813.1
type: Protein
SIO_000068: ncbiprotein

position:81695:-1
position: 81695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:118025:-1
position: 118025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:117752-118025:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:111206-111288:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:99208-99256:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:89920-89999:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:88631-88777:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:84626-84770:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:83791-83937:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:83221-83283:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:83054-83137:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:81934-82077:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:81695-81822:-1:exon

CELF5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CELF5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CUGBP Elav-like family member 5 isoform X2
translation: MARLREGEARRQPPPLPPAPPPPRRASPMSSSGGAEPPAQPGSMKDLDAIKLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGDRKLFVGMLNKQQSEDDVLRLFEPFGVIDECTVLRGPDGNSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGIFTPSLTLPFSPYSAYAQALMQQQTTVLSTSHGSYVSPGVAFSPCHIQQIGAVSLNGLPATPVAQTSGLHSPPLLGTTGVPGLVAPISNGFTSVVPFPNGHPTLETVYTSGFVPYSAQSPSVAETLHPAFTGVQQYAAVYPTTSITPIAQSIPQPPPILQQQQREGPEGCNLFIYHLPQEFGDNELMQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLKVQLKRPKDANHPY
SIO_010081: CELF5
subclass of: SO_0000673
so part of: CELF5
location: complement(join(81695..81822,81934..82077,83054..83137,83221..83283,83791..83937,84626..84770,88631..88777,89920..89999,90594..90722,99208..99256,111206..111288,117752..118025))
location: region:81695-118025:-1
so has part: feature:117752-118025:-1:exon
so has part: feature:111206-111288:-1:exon
so has part: feature:99208-99256:-1:exon
so has part: feature:90594-90722:-1:exon
so has part: feature:89920-89999:-1:exon
so has part: feature:88631-88777:-1:exon
so has part: feature:84626-84770:-1:exon
so has part: feature:83791-83937:-1:exon
so has part: feature:83221-83283:-1:exon
so has part: feature:83054-83137:-1:exon
so has part: feature:81934-82077:-1:exon
so has part: feature:81695-81822:-1:exon

XP_040393812.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:117752-118025:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:111206-111288:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:99208-99256:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:90594-90722:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:89920-89999:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:88631-88777:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:84626-84770:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:83791-83937:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:83221-83283:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:83054-83137:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:81934-82077:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:81695-81822:-1:exon

CELF5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CELF5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CUGBP Elav-like family member 5 isoform X4
translation: MARLREGEARRQPPPLPPAPPPPRRASPMSSSGGAEPPAQPGSMKDLDAIKLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEDDVLRLFEPFGVIDECTVLRGPDGNSKGCAFVKFSSHTEAQAAIHALHGSQTMPLMQQQTTVLSTSHGSYVSPGVAFSPCHIQQIGAVSLNGLPATPVAQTSGLHSPPLLGTTGVPGLVAPISNGFTSVVPFPNGHPTLETVYTSGFVPYSAQSPSVAETLHPAFTGVQQYAAVYPTTSITPIAQSIPQPPPILQQQQREGPEGCNLFIYHLPQEFGDNELMQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLKVQLKRPKDANHPY
SIO_010081: CELF5
subclass of: SO_0000673
so part of: CELF5
location: complement(join(81695..81822,81934..82077,83054..83137,83221..83283,83791..83937,84626..84770,89920..89999,90594..90722,99205..99256,111206..111288,117752..118025))
location: region:81695-118025:-1
so has part: feature:117752-118025:-1:exon
so has part: feature:111206-111288:-1:exon
so has part: feature:99205-99256:-1:exon
so has part: feature:90594-90722:-1:exon
so has part: feature:89920-89999:-1:exon
so has part: feature:84626-84770:-1:exon
so has part: feature:83791-83937:-1:exon
so has part: feature:83221-83283:-1:exon
so has part: feature:83054-83137:-1:exon
so has part: feature:81934-82077:-1:exon
so has part: feature:81695-81822:-1:exon

XP_040393814.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:117752-118025:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:111206-111288:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:99205-99256:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:90594-90722:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:89920-89999:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:84626-84770:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:83791-83937:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:83221-83283:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:83054-83137:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:81934-82077:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:81695-81822:-1:exon

CELF5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CELF5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CUGBP Elav-like family member 5 isoform X1
translation: MARLREGEARRQPPPLPPAPPPPRRASPMSSSGGAEPPAQPGSMKDLDAIKLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEDDVLRLFEPFGVIDECTVLRGPDGNSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGIFTPSLTLPFSPYSAYAQALMQQQTTVLSTSHGSYVSPGVAFSPCHIQQIGAVSLNGLPATPVAQTSGLHSPPLLGTTGVPGLVAPISNGFTSVVPFPNGHPTLETVYTSGFVPYSAQSPSVAETLHPAFTGVQQYAAVYPTTSITPIAQSIPQPPPILQQQQREGPEGCNLFIYHLPQEFGDNELMQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLKVQLKRPKDANHPY
SIO_010081: CELF5
subclass of: SO_0000673
so part of: CELF5
location: complement(join(81695..81822,81934..82077,83054..83137,83221..83283,83791..83937,84626..84770,88631..88777,89920..89999,90594..90722,99205..99256,111206..111288,117752..118025))
location: region:81695-118025:-1
so has part: feature:117752-118025:-1:exon
so has part: feature:111206-111288:-1:exon
so has part: feature:99205-99256:-1:exon
so has part: feature:90594-90722:-1:exon
so has part: feature:89920-89999:-1:exon
so has part: feature:88631-88777:-1:exon
so has part: feature:84626-84770:-1:exon
so has part: feature:83791-83937:-1:exon
so has part: feature:83221-83283:-1:exon
so has part: feature:83054-83137:-1:exon
so has part: feature:81934-82077:-1:exon
so has part: feature:81695-81822:-1:exon

XP_040393809.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:117752-118025:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:111206-111288:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:99205-99256:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:90594-90722:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:89920-89999:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:88631-88777:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:84626-84770:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:83791-83937:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:83221-83283:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:83054-83137:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:81934-82077:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:81695-81822:-1:exon

CELF5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CELF5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CUGBP Elav-like family member 5 isoform X1
translation: MARLREGEARRQPPPLPPAPPPPRRASPMSSSGGAEPPAQPGSMKDLDAIKLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEDDVLRLFEPFGVIDECTVLRGPDGNSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGIFTPSLTLPFSPYSAYAQALMQQQTTVLSTSHGSYVSPGVAFSPCHIQQIGAVSLNGLPATPVAQTSGLHSPPLLGTTGVPGLVAPISNGFTSVVPFPNGHPTLETVYTSGFVPYSAQSPSVAETLHPAFTGVQQYAAVYPTTSITPIAQSIPQPPPILQQQQREGPEGCNLFIYHLPQEFGDNELMQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLKVQLKRPKDANHPY
SIO_010081: CELF5
subclass of: SO_0000673
so part of: CELF5
location: complement(join(81695..81822,81934..82077,83054..83137,83221..83283,83791..83937,84626..84770,88631..88777,89920..89999,90594..90722,99205..99256,111206..111288,117752..118025))
location: region:81695-118025:-1
so has part: feature:117752-118025:-1:exon
so has part: feature:111206-111288:-1:exon
so has part: feature:99205-99256:-1:exon
so has part: feature:90594-90722:-1:exon
so has part: feature:89920-89999:-1:exon
so has part: feature:88631-88777:-1:exon
so has part: feature:84626-84770:-1:exon
so has part: feature:83791-83937:-1:exon
so has part: feature:83221-83283:-1:exon
so has part: feature:83054-83137:-1:exon
so has part: feature:81934-82077:-1:exon
so has part: feature:81695-81822:-1:exon

XP_040393810.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:117752-118025:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:111206-111288:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:99205-99256:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:90594-90722:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:89920-89999:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:88631-88777:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:84626-84770:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:83791-83937:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:83221-83283:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:83054-83137:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:81934-82077:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:81695-81822:-1:exon

CELF5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CELF5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: CUGBP Elav-like family member 5 isoform X1
translation: MARLREGEARRQPPPLPPAPPPPRRASPMSSSGGAEPPAQPGSMKDLDAIKLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEDDVLRLFEPFGVIDECTVLRGPDGNSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGIFTPSLTLPFSPYSAYAQALMQQQTTVLSTSHGSYVSPGVAFSPCHIQQIGAVSLNGLPATPVAQTSGLHSPPLLGTTGVPGLVAPISNGFTSVVPFPNGHPTLETVYTSGFVPYSAQSPSVAETLHPAFTGVQQYAAVYPTTSITPIAQSIPQPPPILQQQQREGPEGCNLFIYHLPQEFGDNELMQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPSSAQTAIQAMNGFQIGMKRLKVQLKRPKDANHPY
SIO_010081: CELF5
subclass of: SO_0000673
so part of: CELF5
location: complement(join(81695..81822,81934..82077,83054..83137,83221..83283,83791..83937,84626..84770,88631..88777,89920..89999,90594..90722,99205..99256,111206..111288,117752..118025))
location: region:81695-118025:-1
so has part: feature:117752-118025:-1:exon
so has part: feature:111206-111288:-1:exon
so has part: feature:99205-99256:-1:exon
so has part: feature:90594-90722:-1:exon
so has part: feature:89920-89999:-1:exon
so has part: feature:88631-88777:-1:exon
so has part: feature:84626-84770:-1:exon
so has part: feature:83791-83937:-1:exon
so has part: feature:83221-83283:-1:exon
so has part: feature:83054-83137:-1:exon
so has part: feature:81934-82077:-1:exon
so has part: feature:81695-81822:-1:exon

XP_040393811.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:117752-118025:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:111206-111288:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:99205-99256:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:90594-90722:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:89920-89999:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:88631-88777:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:84626-84770:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:83791-83937:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:83221-83283:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:83054-83137:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:81934-82077:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:81695-81822:-1:exon

CELF5
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 8869
gene: CELF5
product: CUGBP Elav-like family member 5, transcript variant X10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 long SRA reads, 24 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005814761.1
SIO_010081: CELF5
so part of: CELF5
location: complement(join(81720..81822,81934..82656,83054..83137,83221..83283,83791..83937,84626..84770,88631..88777,89920..89999,90594..90722,99205..99256,111206..111288,117752..118033))
location: region:81720-118033:-1
so has part: feature:117752-118033:-1:exon
so has part: feature:111206-111288:-1:exon
so has part: feature:99205-99256:-1:exon
so has part: feature:90594-90722:-1:exon
so has part: feature:89920-89999:-1:exon
so has part: feature:88631-88777:-1:exon
so has part: feature:84626-84770:-1:exon
so has part: feature:83791-83937:-1:exon
so has part: feature:83221-83283:-1:exon
so has part: feature:83054-83137:-1:exon
so has part: feature:81934-82656:-1:exon
so has part: feature:81720-81822:-1:exon

position:81720:-1
position: 81720
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:117752-118033:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:111206-111288:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:99205-99256:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:90594-90722:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:89920-89999:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:88631-88777:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:84626-84770:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:83791-83937:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:83221-83283:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:83054-83137:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:81934-82656:-1:exon

position:82656:-1
position: 82656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:81720-81822:-1:exon

LOC121060256
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: LOC121060256
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(123425..126797)
location: region:123425-126797:-1
so has part: feature:123425-126797:-1:exon
subclass of: SO_0000010

121060256
type: Gene
SIO_000068: ncbigene

position:123425:-1
position: 123425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:126797:-1
position: 126797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:123425-126797:-1:exon

LOC121060256
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060256
product: activated RNA polymerase II transcriptional coactivator p15-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_040537887.1
SIO_010081: LOC121060256
subclass of: SO_0000673
so part of: LOC121060256
location: complement(join(123425..124064,125943..126051,126293..126409,126669..126797))
location: region:123425-126797:-1
so has part: feature:126669-126797:-1:exon
so has part: feature:126293-126409:-1:exon
so has part: feature:125943-126051:-1:exon
so has part: feature:123425-124064:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:126669-126797:-1:exon

position:126669:-1
position: 126669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:126293-126409:-1:exon

position:126293:-1
position: 126293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:126409:-1
position: 126409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:125943-126051:-1:exon

position:125943:-1
position: 125943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:126051:-1
position: 126051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:123425-124064:-1:exon

position:124064:-1
position: 124064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121060256
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060256
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: activated RNA polymerase II transcriptional coactivator p15-like
translation: MTGAEEPARPSGRGPGGGGGEGAKKRKKEMSSKSEKRPESEARPPGVTAKPQGQDSEEEGMFQIGKMRYVRVSCFKGKVLVDIREFYVDKEGDMKPGRKGIALSAEQWNQLKKIIPDIDAAVKIF
SIO_010081: LOC121060256
subclass of: SO_0000673
so part of: LOC121060256
location: complement(join(123985..124064,125943..126051,126293..126409,126669..126740))
location: region:123985-126740:-1
so has part: feature:126669-126740:-1:exon
so has part: feature:126293-126409:-1:exon
so has part: feature:125943-126051:-1:exon
so has part: feature:123985-124064:-1:exon

XP_040393821.1
type: Protein
SIO_000068: ncbiprotein

position:123985:-1
position: 123985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:126740:-1
position: 126740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:126669-126740:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:126293-126409:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:125943-126051:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:123985-124064:-1:exon

NCLN
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: NCLN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(131336..139159)
location: region:131336-139159:-1
so has part: feature:131336-139159:-1:exon
subclass of: SO_0000010

121060252
type: Gene
SIO_000068: ncbigene

position:131336:-1
position: 131336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:139159:-1
position: 139159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:131336-139159:-1:exon

NCLN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: NCLN
product: nicalin, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 349 long SRA reads, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537882.1
SIO_010081: NCLN
subclass of: SO_0000673
so part of: NCLN
location: complement(join(131336..131863,132262..132340,132427..132480,133090..133253,133366..133404,133493..133580,133788..133966,134401..134540,134718..134806,135236..135339,135544..135624,135815..135909,136515..136659,136888..137078,138876..139159))
location: region:131336-139159:-1
so has part: feature:138876-139159:-1:exon
so has part: feature:136888-137078:-1:exon
so has part: feature:136515-136659:-1:exon
so has part: feature:135815-135909:-1:exon
so has part: feature:135544-135624:-1:exon
so has part: feature:135236-135339:-1:exon
so has part: feature:134718-134806:-1:exon
so has part: feature:134401-134540:-1:exon
so has part: feature:133788-133966:-1:exon
so has part: feature:133493-133580:-1:exon
so has part: feature:133366-133404:-1:exon
so has part: feature:133090-133253:-1:exon
so has part: feature:132427-132480:-1:exon
so has part: feature:132262-132340:-1:exon
so has part: feature:131336-131863:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:138876-139159:-1:exon

position:138876:-1
position: 138876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:136888-137078:-1:exon

position:136888:-1
position: 136888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:137078:-1
position: 137078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:136515-136659:-1:exon

position:136515:-1
position: 136515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:136659:-1
position: 136659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:135815-135909:-1:exon

position:135815:-1
position: 135815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:135909:-1
position: 135909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:135544-135624:-1:exon

position:135544:-1
position: 135544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:135624:-1
position: 135624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:135236-135339:-1:exon

position:135236:-1
position: 135236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:135339:-1
position: 135339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:134718-134806:-1:exon

position:134718:-1
position: 134718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:134806:-1
position: 134806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:134401-134540:-1:exon

position:134401:-1
position: 134401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:134540:-1
position: 134540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:133788-133966:-1:exon

position:133788:-1
position: 133788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:133966:-1
position: 133966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:133493-133580:-1:exon

position:133493:-1
position: 133493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:133580:-1
position: 133580
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:133366-133404:-1:exon

position:133366:-1
position: 133366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:133404:-1
position: 133404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:133090-133253:-1:exon

position:133090:-1
position: 133090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:133253:-1
position: 133253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:132427-132480:-1:exon

position:132427:-1
position: 132427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:132480:-1
position: 132480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:132262-132340:-1:exon

position:132262:-1
position: 132262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:132340:-1
position: 132340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:131336-131863:-1:exon

position:131863:-1
position: 131863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NCLN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: NCLN
product: nicalin, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 129 long SRA reads, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537883.1
SIO_010081: NCLN
subclass of: SO_0000673
so part of: NCLN
location: complement(join(131336..131577,131764..131863,132262..132340,132427..132480,133090..133253,133366..133404,133493..133580,133788..133966,134401..134540,134718..134806,135236..135339,135544..135624,135815..135909,136515..136659,136888..137078,138876..139148))
location: region:131336-139148:-1
so has part: feature:138876-139148:-1:exon
so has part: feature:136888-137078:-1:exon
so has part: feature:136515-136659:-1:exon
so has part: feature:135815-135909:-1:exon
so has part: feature:135544-135624:-1:exon
so has part: feature:135236-135339:-1:exon
so has part: feature:134718-134806:-1:exon
so has part: feature:134401-134540:-1:exon
so has part: feature:133788-133966:-1:exon
so has part: feature:133493-133580:-1:exon
so has part: feature:133366-133404:-1:exon
so has part: feature:133090-133253:-1:exon
so has part: feature:132427-132480:-1:exon
so has part: feature:132262-132340:-1:exon
so has part: feature:131764-131863:-1:exon
so has part: feature:131336-131577:-1:exon

position:139148:-1
position: 139148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:138876-139148:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:136888-137078:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:136515-136659:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:135815-135909:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:135544-135624:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:135236-135339:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:134718-134806:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:134401-134540:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:133788-133966:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:133493-133580:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:133366-133404:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:133090-133253:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:132427-132480:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:132262-132340:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:131764-131863:-1:exon

position:131764:-1
position: 131764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:131336-131577:-1:exon

position:131577:-1
position: 131577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NCLN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: NCLN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nicalin
translation: MLEEAGEVLESVLKASCLPLSFLLFVPAVLLLLGPPPAAEAAHEFTVYRMQQYELGGQPYGTRSAVLNTEARTVEADVLSRRCVMMRLVDFSYEQYQKALRQSAGAVVIILPRSISSVPQDVVRQFMEIEPEMLAMETIVPVYFAVEDEELLSIYEQTRAASASQGSASAAEVLLHTATANGFQMVTSGAQSKAINDWLIPSVEGRLTGLGGEDLPTVVIVAHYDSFGVAPWLSHGADSNGSGISVLLELARLFSRLYTYRRTHAGYNLLFFASGGGKFNYQGTKRWLEDNLDHTDSSLLQDNVAFVLCLDTLGRGNSLHLHVSKPPKEGTLQHAFLRELELVVASQFPEVKFSMVHKKINLAEDMLAWEHERFAIRRLPAFTISHLESHRDSLRNSIMDRRARVDTKALTRNTRIIAEALTRVIYNLTDKGAPADLQIFTDQMQIQQEQLESVMDWLSSQPRAAQLIDKDSTFLSTLEYYMGRYLKDVKQHHVKADKRDPEFVFYDQLKQVMNAYRVKPAIFDLLLAVCIAAYLGVAYVAVQHFGLLYKMIQRLSLKTKQQ
SIO_010081: NCLN
subclass of: SO_0000673
so part of: NCLN
location: complement(join(131804..131863,132262..132340,132427..132480,133090..133253,133366..133404,133493..133580,133788..133966,134401..134540,134718..134806,135236..135339,135544..135624,135815..135909,136515..136659,136888..137078,138876..139056))
location: region:131804-139056:-1
so has part: feature:138876-139056:-1:exon
so has part: feature:136888-137078:-1:exon
so has part: feature:136515-136659:-1:exon
so has part: feature:135815-135909:-1:exon
so has part: feature:135544-135624:-1:exon
so has part: feature:135236-135339:-1:exon
so has part: feature:134718-134806:-1:exon
so has part: feature:134401-134540:-1:exon
so has part: feature:133788-133966:-1:exon
so has part: feature:133493-133580:-1:exon
so has part: feature:133366-133404:-1:exon
so has part: feature:133090-133253:-1:exon
so has part: feature:132427-132480:-1:exon
so has part: feature:132262-132340:-1:exon
so has part: feature:131804-131863:-1:exon

XP_040393816.1
type: Protein
SIO_000068: ncbiprotein

position:131804:-1
position: 131804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:139056:-1
position: 139056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:138876-139056:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:136888-137078:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:136515-136659:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:135815-135909:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:135544-135624:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:135236-135339:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:134718-134806:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:134401-134540:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:133788-133966:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:133493-133580:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:133366-133404:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:133090-133253:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:132427-132480:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:132262-132340:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:131804-131863:-1:exon

NCLN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: NCLN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nicalin
translation: MLEEAGEVLESVLKASCLPLSFLLFVPAVLLLLGPPPAAEAAHEFTVYRMQQYELGGQPYGTRSAVLNTEARTVEADVLSRRCVMMRLVDFSYEQYQKALRQSAGAVVIILPRSISSVPQDVVRQFMEIEPEMLAMETIVPVYFAVEDEELLSIYEQTRAASASQGSASAAEVLLHTATANGFQMVTSGAQSKAINDWLIPSVEGRLTGLGGEDLPTVVIVAHYDSFGVAPWLSHGADSNGSGISVLLELARLFSRLYTYRRTHAGYNLLFFASGGGKFNYQGTKRWLEDNLDHTDSSLLQDNVAFVLCLDTLGRGNSLHLHVSKPPKEGTLQHAFLRELELVVASQFPEVKFSMVHKKINLAEDMLAWEHERFAIRRLPAFTISHLESHRDSLRNSIMDRRARVDTKALTRNTRIIAEALTRVIYNLTDKGAPADLQIFTDQMQIQQEQLESVMDWLSSQPRAAQLIDKDSTFLSTLEYYMGRYLKDVKQHHVKADKRDPEFVFYDQLKQVMNAYRVKPAIFDLLLAVCIAAYLGVAYVAVQHFGLLYKMIQRLSLKTKQQ
SIO_010081: NCLN
subclass of: SO_0000673
so part of: NCLN
location: complement(join(131804..131863,132262..132340,132427..132480,133090..133253,133366..133404,133493..133580,133788..133966,134401..134540,134718..134806,135236..135339,135544..135624,135815..135909,136515..136659,136888..137078,138876..139056))
location: region:131804-139056:-1
so has part: feature:138876-139056:-1:exon
so has part: feature:136888-137078:-1:exon
so has part: feature:136515-136659:-1:exon
so has part: feature:135815-135909:-1:exon
so has part: feature:135544-135624:-1:exon
so has part: feature:135236-135339:-1:exon
so has part: feature:134718-134806:-1:exon
so has part: feature:134401-134540:-1:exon
so has part: feature:133788-133966:-1:exon
so has part: feature:133493-133580:-1:exon
so has part: feature:133366-133404:-1:exon
so has part: feature:133090-133253:-1:exon
so has part: feature:132427-132480:-1:exon
so has part: feature:132262-132340:-1:exon
so has part: feature:131804-131863:-1:exon

XP_040393817.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:138876-139056:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:136888-137078:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:136515-136659:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:135815-135909:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:135544-135624:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:135236-135339:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:134718-134806:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:134401-134540:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:133788-133966:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:133493-133580:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:133366-133404:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:133090-133253:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:132427-132480:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:132262-132340:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:131804-131863:-1:exon

S1PR4
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: S1PR4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(139708..144520)
location: region:139708-144520:-1
so has part: feature:139708-144520:-1:exon
subclass of: SO_0000010

121060253
type: Gene
SIO_000068: ncbigene

position:139708:-1
position: 139708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:144520:-1
position: 144520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:139708-144520:-1:exon

S1PR4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: S1PR4
product: sphingosine-1-phosphate receptor 4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 118 long SRA reads, 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_040537884.1
SIO_010081: S1PR4
subclass of: SO_0000673
so part of: S1PR4
location: complement(join(139708..142875,143687..143823,144378..144520))
location: region:139708-144520:-1
so has part: feature:144378-144520:-1:exon
so has part: feature:143687-143823:-1:exon
so has part: feature:139708-142875:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:144378-144520:-1:exon

position:144378:-1
position: 144378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:143687-143823:-1:exon

position:143687:-1
position: 143687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:143823:-1
position: 143823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:139708-142875:-1:exon

position:142875:-1
position: 142875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

S1PR4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: S1PR4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sphingosine 1-phosphate receptor 4
translation: MDGPGQSWLVNRSFPLPLGSAQYPELRLDLLDRKGSCLHLAAMRNVNIILQHYNFTGKLTNRQSRDEGMGLIRTTFVIISCIIILENLLVLLAILRCLRARRWVYSCIASITVSDLLAGVAYLSNLCLSGKKTFQLSPQLWFLREGILFIALAASTFSLLVTAIERYSAMVRPIAENEASKTLRLRGLIISCWLLAFIIGLLPLLGWNCLCDFNACSVLLPLYSKNYILFSVVMFSIILLGIIGLYISIFQLVQASSKQTTSRHSRKRSLRLLKTVLMILGAFIICWSPLFALMLFDVFCETQTCRLLHSLDWTLALAMLNSGVNPIIYSLRSVEVRRAVGSLLCCCCLRVGLCKPGDCLVITDINSGSSTESSLRCRESFRSSVALNARPRAPLSSNSSMMSNLPSL
SIO_010081: S1PR4
subclass of: SO_0000673
so part of: S1PR4
location: complement(141457..142683)
location: region:141457-142683:-1
so has part: feature:141457-142683:-1:exon

XP_040393818.1
type: Protein
SIO_000068: ncbiprotein

position:141457:-1
position: 141457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:142683:-1
position: 142683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:141457-142683:-1:exon

LOC121060255
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: LOC121060255
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 148938..150961
location: region:148938-150961:1
so has part: feature:148938-150961:1:exon
subclass of: SO_0000010

121060255
type: Gene
SIO_000068: ncbigene

position:148938:1
position: 148938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:150961:1
position: 150961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:148938-150961:1:exon

LOC121060255
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060255
product: mast cell protease 1A-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_040537886.1
SIO_010081: LOC121060255
subclass of: SO_0000673
so part of: LOC121060255
location: join(148938..149057,149148..149292,149484..149619,149907..150158,150484..150961)
location: region:148938-150961:1
so has part: feature:148938-149057:1:exon
so has part: feature:149148-149292:1:exon
so has part: feature:149484-149619:1:exon
so has part: feature:149907-150158:1:exon
so has part: feature:150484-150961:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:148938-149057:1:exon

position:149057:1
position: 149057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:149148-149292:1:exon

position:149148:1
position: 149148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:149292:1
position: 149292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:149484-149619:1:exon

position:149484:1
position: 149484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:149619:1
position: 149619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:149907-150158:1:exon

position:149907:1
position: 149907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:150158:1
position: 150158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:150484-150961:1:exon

position:150484:1
position: 150484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121060255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060255
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mast cell protease 1A-like
translation: MCQSQLLLALLLLFFCPWADTSALWGQIVGGHEAQPHSHPYMAYLKIGKSTCGGFLVAPDWVMTAAHCMGNATVILGAHNIYEPETTQQVRGVLRYHQHPEYDPTTVSNDIMLLKLTAKATLNNYVKTIPLPKTSNYLPTGTKCSIAGWGLIDKDQETSKLFETKVTIYSRRKCVHFYPHLNAGMVCAGSFHELRDSSQGDSGGPLVCNKVAQGIVSFGHDNPPGVYTRISNYLPWIKKNMKK
SIO_010081: LOC121060255
subclass of: SO_0000673
so part of: LOC121060255
location: join(148994..149057,149148..149292,149484..149619,149907..150158,150484..150618)
location: region:148994-150618:1
so has part: feature:148994-149057:1:exon
so has part: feature:149148-149292:1:exon
so has part: feature:149484-149619:1:exon
so has part: feature:149907-150158:1:exon
so has part: feature:150484-150618:1:exon

XP_040393820.1
type: Protein
SIO_000068: ncbiprotein

position:148994:1
position: 148994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:150618:1
position: 150618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:148994-149057:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:149148-149292:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:149484-149619:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:149907-150158:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:150484-150618:1:exon

LOC121060254
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: LOC121060254
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 151084..156927
location: region:151084-156927:1
so has part: feature:151084-156927:1:exon
subclass of: SO_0000010

121060254
type: Gene
SIO_000068: ncbigene

position:151084:1
position: 151084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:156927:1
position: 156927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:151084-156927:1:exon

LOC121060254
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060254
product: granzyme G-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_040537885.1
SIO_010081: LOC121060254
subclass of: SO_0000673
so part of: LOC121060254
location: join(151084..153900,154008..154155,155055..155196,155352..155585,156214..156927)
location: region:151084-156927:1
so has part: feature:151084-153900:1:exon
so has part: feature:154008-154155:1:exon
so has part: feature:155055-155196:1:exon
so has part: feature:155352-155585:1:exon
so has part: feature:156214-156927:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:151084-153900:1:exon

position:153900:1
position: 153900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:154008-154155:1:exon

position:154008:1
position: 154008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:154155:1
position: 154155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:155055-155196:1:exon

position:155055:1
position: 155055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:155196:1
position: 155196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:155352-155585:1:exon

position:155352:1
position: 155352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:155585:1
position: 155585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:156214-156927:1:exon

position:156214:1
position: 156214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121060254
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060254
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: granzyme G-like
translation: MSLTSAVSWSLVSGYKTFLGAGRDPSCSLTSKASNEAEHAVMKHLQKLLLALLLVACPPAKASHAWNRMVGAGRAKAPARPYMAYLEGKSGHFCGGFLVAPSWVMTAAQCFSHKPLTVILGAHNIQRREESWQMFEVQRYHRHPDFTNPMKGNDILLLKLKGNATSNSYVRTISFQKIKASGGTVCSIAGWGHKAPTATFHEANVTIHKQRDCLTVYPGLANNLICANSGSAGVPEEGDTGGPLVCNNKAYGIFSYQYKNRIGFYTHIAPYLPWVDSIMKSA
SIO_010081: LOC121060254
subclass of: SO_0000673
so part of: LOC121060254
location: join(153714..153900,154008..154155,155055..155196,155352..155585,156214..156351)
location: region:153714-156351:1
so has part: feature:153714-153900:1:exon
so has part: feature:154008-154155:1:exon
so has part: feature:155055-155196:1:exon
so has part: feature:155352-155585:1:exon
so has part: feature:156214-156351:1:exon

XP_040393819.1
type: Protein
SIO_000068: ncbiprotein

position:153714:1
position: 153714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:156351:1
position: 156351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:153714-153900:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:154008-154155:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:155055-155196:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:155352-155585:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:156214-156351:1:exon

LOC121060127
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: LOC121060127
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(164859..180808)
location: region:164859-180808:-1
so has part: feature:164859-180808:-1:exon
subclass of: SO_0000010

121060127
type: Gene
SIO_000068: ncbigene

position:164859:-1
position: 164859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:180808:-1
position: 180808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:164859-180808:-1:exon

LOC121060127
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060127
product: guanine nucleotide-binding protein subunit alpha-11
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 long SRA reads, 47 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537610.1
SIO_010081: LOC121060127
subclass of: SO_0000673
so part of: LOC121060127
location: complement(join(164859..169175,170819..170972,171738..171867,173189..173317,174333..174487,176174..176358,180595..180808))
location: region:164859-180808:-1
so has part: feature:180595-180808:-1:exon
so has part: feature:176174-176358:-1:exon
so has part: feature:174333-174487:-1:exon
so has part: feature:173189-173317:-1:exon
so has part: feature:171738-171867:-1:exon
so has part: feature:170819-170972:-1:exon
so has part: feature:164859-169175:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:180595-180808:-1:exon

position:180595:-1
position: 180595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:176174-176358:-1:exon

position:176174:-1
position: 176174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:176358:-1
position: 176358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:174333-174487:-1:exon

position:174333:-1
position: 174333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:174487:-1
position: 174487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:173189-173317:-1:exon

position:173189:-1
position: 173189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:173317:-1
position: 173317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:171738-171867:-1:exon

position:171738:-1
position: 171738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:171867:-1
position: 171867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:170819-170972:-1:exon

position:170819:-1
position: 170819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:170972:-1
position: 170972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:164859-169175:-1:exon

position:169175:-1
position: 169175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121060127
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060127
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: guanine nucleotide-binding protein subunit alpha-11
translation: MTLESMMACCLSDEVKESKRINAEIEKQLRRDKRDARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSEEDKKGFTKLVYQNIFTAMQSMIRAMETLKILYKYEQNKANAVLIREVDVEKVMTFEQPYVSAIKTLWNDPGIQECYDRRREYQLSDSAKYYLSDVDRIATPGYLPTQQDVLRVRVPTTGIIEYPFDLENIIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEDKILYSHLVDYFPEFDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV
SIO_010081: LOC121060127
subclass of: SO_0000673
so part of: LOC121060127
location: complement(join(168985..169175,170819..170972,171738..171867,173189..173317,174333..174487,176174..176358,180595..180730))
location: region:168985-180730:-1
so has part: feature:180595-180730:-1:exon
so has part: feature:176174-176358:-1:exon
so has part: feature:174333-174487:-1:exon
so has part: feature:173189-173317:-1:exon
so has part: feature:171738-171867:-1:exon
so has part: feature:170819-170972:-1:exon
so has part: feature:168985-169175:-1:exon

XP_040393544.1
type: Protein
SIO_000068: ncbiprotein

position:168985:-1
position: 168985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:180730:-1
position: 180730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:180595-180730:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:176174-176358:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:174333-174487:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:173189-173317:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:171738-171867:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:170819-170972:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:168985-169175:-1:exon

TLE5
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: TLE5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 192342..200802
location: region:192342-200802:1
so has part: feature:192342-200802:1:exon
subclass of: SO_0000010

121060206
type: Gene
SIO_000068: ncbigene

position:192342:1
position: 192342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:200802:1
position: 200802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:192342-200802:1:exon

TLE5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: TLE5
product: TLE family member 5, transcriptional modulator, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537787.1
SIO_010081: TLE5
subclass of: SO_0000673
so part of: TLE5
location: join(192342..192511,192954..193051,194260..194323,196857..196901,198370..198432,199164..199238,199772..200802)
location: region:192342-200802:1
so has part: feature:192342-192511:1:exon
so has part: feature:192954-193051:1:exon
so has part: feature:194260-194323:1:exon
so has part: feature:196857-196901:1:exon
so has part: feature:198370-198432:1:exon
so has part: feature:199164-199238:1:exon
so has part: feature:199772-200802:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:192342-192511:1:exon

position:192511:1
position: 192511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:192954-193051:1:exon

position:192954:1
position: 192954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:193051:1
position: 193051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:194260-194323:1:exon

position:194260:1
position: 194260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:194323:1
position: 194323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:196857-196901:1:exon

position:196857:1
position: 196857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:196901:1
position: 196901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:198370-198432:1:exon

position:198370:1
position: 198370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:198432:1
position: 198432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:199164-199238:1:exon

position:199164:1
position: 199164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:199238:1
position: 199238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:199772-200802:1:exon

position:199772:1
position: 199772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TLE5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: TLE5
product: TLE family member 5, transcriptional modulator, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_040537788.1
SIO_010081: TLE5
subclass of: SO_0000673
so part of: TLE5
location: join(192342..192511,192954..193051,194260..194323,198370..198432,199164..199238,199769..200802)
location: region:192342-200802:1
so has part: feature:192342-192511:1:exon
so has part: feature:192954-193051:1:exon
so has part: feature:194260-194323:1:exon
so has part: feature:198370-198432:1:exon
so has part: feature:199164-199238:1:exon
so has part: feature:199769-200802:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:192342-192511:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:192954-193051:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:194260-194323:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:198370-198432:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:199164-199238:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:199769-200802:1:exon

position:199769:1
position: 199769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TLE5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: TLE5
product: TLE family member 5, transcriptional modulator, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537786.1
SIO_010081: TLE5
subclass of: SO_0000673
so part of: TLE5
location: join(192343..192511,192954..193051,194260..194323,196857..196901,198370..198432,199164..199238,199769..200802)
location: region:192343-200802:1
so has part: feature:192343-192511:1:exon
so has part: feature:192954-193051:1:exon
so has part: feature:194260-194323:1:exon
so has part: feature:196857-196901:1:exon
so has part: feature:198370-198432:1:exon
so has part: feature:199164-199238:1:exon
so has part: feature:199769-200802:1:exon

position:192343:1
position: 192343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:192343-192511:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:192954-193051:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:194260-194323:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:196857-196901:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:198370-198432:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:199164-199238:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:199769-200802:1:exon

TLE5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: TLE5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: TLE family member 5 isoform X1
translation: MMFPQSRHSGSSHLPQQLKFTTSDSCDRIKDEFQLLQAQYHSLKLECDKLASEKSEMQRHYVMYYEMSYGLNIEMHKQAEIVKRLNGICAQVLPYLSQEHQQQVLGAIERAKQVTAPELNSIIRQQLQAHQLSQLQALALPLTPLPVGLQPPSLPAVSAGSGLLSLSALGSQGHLTKEDKNGHDGDAHQDDDGEKSD
SIO_010081: TLE5
subclass of: SO_0000673
so part of: TLE5
location: join(192485..192511,192954..193051,194260..194323,196857..196901,198370..198432,199164..199238,199769..199990)
location: region:192485-199990:1
so has part: feature:192485-192511:1:exon
so has part: feature:192954-193051:1:exon
so has part: feature:194260-194323:1:exon
so has part: feature:196857-196901:1:exon
so has part: feature:198370-198432:1:exon
so has part: feature:199164-199238:1:exon
so has part: feature:199769-199990:1:exon

XP_040393720.1
type: Protein
SIO_000068: ncbiprotein

position:192485:1
position: 192485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:199990:1
position: 199990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:192485-192511:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:192954-193051:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:194260-194323:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:196857-196901:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:198370-198432:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:199164-199238:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:199769-199990:1:exon

TLE5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: TLE5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: TLE family member 5 isoform X2
translation: MMFPQSRHSGSSHLPQQLKFTTSDSCDRIKDEFQLLQAQYHSLKLECDKLASEKSEMQRHYVMYYEMSYGLNIEMHKQAEIVKRLNGICAQVLPYLSQEHQQQVLGAIERAKQVTAPELNSIIRQLQAHQLSQLQALALPLTPLPVGLQPPSLPAVSAGSGLLSLSALGSQGHLTKEDKNGHDGDAHQDDDGEKSD
SIO_010081: TLE5
subclass of: SO_0000673
so part of: TLE5
location: join(192485..192511,192954..193051,194260..194323,196857..196901,198370..198432,199164..199238,199772..199990)
location: region:192485-199990:1
so has part: feature:192485-192511:1:exon
so has part: feature:192954-193051:1:exon
so has part: feature:194260-194323:1:exon
so has part: feature:196857-196901:1:exon
so has part: feature:198370-198432:1:exon
so has part: feature:199164-199238:1:exon
so has part: feature:199772-199990:1:exon

XP_040393721.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:192485-192511:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:192954-193051:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:194260-194323:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:196857-196901:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:198370-198432:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:199164-199238:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:199772-199990:1:exon

TLE5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: TLE5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: TLE family member 5 isoform X3
translation: MMFPQSRHSGSSHLPQQLKFTTSDSCDRIKDEFQLLQAQYHSLKLECDKLASEKSEMQRHYVMAEIVKRLNGICAQVLPYLSQEHQQQVLGAIERAKQVTAPELNSIIRQQLQAHQLSQLQALALPLTPLPVGLQPPSLPAVSAGSGLLSLSALGSQGHLTKEDKNGHDGDAHQDDDGEKSD
SIO_010081: TLE5
subclass of: SO_0000673
so part of: TLE5
location: join(192485..192511,192954..193051,194260..194323,198370..198432,199164..199238,199769..199990)
location: region:192485-199990:1
so has part: feature:192485-192511:1:exon
so has part: feature:192954-193051:1:exon
so has part: feature:194260-194323:1:exon
so has part: feature:198370-198432:1:exon
so has part: feature:199164-199238:1:exon
so has part: feature:199769-199990:1:exon

XP_040393722.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:192485-192511:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:192954-193051:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:194260-194323:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:198370-198432:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:199164-199238:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:199769-199990:1:exon

TLE2
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: TLE2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 205701..216666
location: region:205701-216666:1
so has part: feature:205701-216666:1:exon
subclass of: SO_0000010

121060205
type: Gene
SIO_000068: ncbigene

position:205701:1
position: 205701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:216666:1
position: 216666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:205701-216666:1:exon

TLE2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: TLE2
product: TLE family member 2, transcriptional corepressor, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_040537783.1
SIO_010081: TLE2
subclass of: SO_0000673
so part of: TLE2
location: join(205701..205756,206250..206313,207124..207168,208977..209039,209239..209313,209771..209963,210899..210915,211111..211212,211473..211517,212316..212465,213246..213375,214329..214489,214730..214806,214885..214968,215056..215305,215456..215703,215827..215974,216045..216195,216299..216375,216450..216666)
location: region:205701-216666:1
so has part: feature:205701-205756:1:exon
so has part: feature:206250-206313:1:exon
so has part: feature:207124-207168:1:exon
so has part: feature:208977-209039:1:exon
so has part: feature:209239-209313:1:exon
so has part: feature:209771-209963:1:exon
so has part: feature:210899-210915:1:exon
so has part: feature:211111-211212:1:exon
so has part: feature:211473-211517:1:exon
so has part: feature:212316-212465:1:exon
so has part: feature:213246-213375:1:exon
so has part: feature:214329-214489:1:exon
so has part: feature:214730-214806:1:exon
so has part: feature:214885-214968:1:exon
so has part: feature:215056-215305:1:exon
so has part: feature:215456-215703:1:exon
so has part: feature:215827-215974:1:exon
so has part: feature:216045-216195:1:exon
so has part: feature:216299-216375:1:exon
so has part: feature:216450-216666:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:205701-205756:1:exon

position:205756:1
position: 205756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:206250-206313:1:exon

position:206250:1
position: 206250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:206313:1
position: 206313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:207124-207168:1:exon

position:207124:1
position: 207124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:207168:1
position: 207168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:208977-209039:1:exon

position:208977:1
position: 208977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:209039:1
position: 209039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:209239-209313:1:exon

position:209239:1
position: 209239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:209313:1
position: 209313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:209771-209963:1:exon

position:209771:1
position: 209771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:209963:1
position: 209963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:210899-210915:1:exon

position:210899:1
position: 210899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210915:1
position: 210915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:211111-211212:1:exon

position:211111:1
position: 211111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211212:1
position: 211212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:211473-211517:1:exon

position:211473:1
position: 211473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211517:1
position: 211517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:212316-212465:1:exon

position:212316:1
position: 212316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:212465:1
position: 212465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:213246-213375:1:exon

position:213246:1
position: 213246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:213375:1
position: 213375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:214329-214489:1:exon

position:214329:1
position: 214329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:214489:1
position: 214489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:214730-214806:1:exon

position:214730:1
position: 214730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:214806:1
position: 214806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:214885-214968:1:exon

position:214885:1
position: 214885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:214968:1
position: 214968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:215056-215305:1:exon

position:215056:1
position: 215056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:215305:1
position: 215305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:215456-215703:1:exon

position:215456:1
position: 215456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:215703:1
position: 215703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:215827-215974:1:exon

position:215827:1
position: 215827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:215974:1
position: 215974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:216045-216195:1:exon

position:216045:1
position: 216045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:216195:1
position: 216195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:216299-216375:1:exon

position:216299:1
position: 216299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:216375:1
position: 216375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:216450-216666:1:exon

position:216450:1
position: 216450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TLE2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: TLE2
product: TLE family member 2, transcriptional corepressor, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_040537781.1
SIO_010081: TLE2
subclass of: SO_0000673
so part of: TLE2
location: join(205710..205756,205842..205930,206250..206313,207124..207168,208977..209039,209239..209313,209774..209963,210899..210915,211111..211212,211473..211517,212316..212465,213246..213375,214329..214489,214730..214806,214885..214968,215056..215305,215456..215703,215827..215974,216045..216195,216299..216375,216450..216666)
location: region:205710-216666:1
so has part: feature:205710-205756:1:exon
so has part: feature:205842-205930:1:exon
so has part: feature:206250-206313:1:exon
so has part: feature:207124-207168:1:exon
so has part: feature:208977-209039:1:exon
so has part: feature:209239-209313:1:exon
so has part: feature:209774-209963:1:exon
so has part: feature:210899-210915:1:exon
so has part: feature:211111-211212:1:exon
so has part: feature:211473-211517:1:exon
so has part: feature:212316-212465:1:exon
so has part: feature:213246-213375:1:exon
so has part: feature:214329-214489:1:exon
so has part: feature:214730-214806:1:exon
so has part: feature:214885-214968:1:exon
so has part: feature:215056-215305:1:exon
so has part: feature:215456-215703:1:exon
so has part: feature:215827-215974:1:exon
so has part: feature:216045-216195:1:exon
so has part: feature:216299-216375:1:exon
so has part: feature:216450-216666:1:exon

position:205710:1
position: 205710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:205710-205756:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:205842-205930:1:exon

position:205842:1
position: 205842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:205930:1
position: 205930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:206250-206313:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:207124-207168:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:208977-209039:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:209239-209313:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:209774-209963:1:exon

position:209774:1
position: 209774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:210899-210915:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:211111-211212:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:211473-211517:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:212316-212465:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:213246-213375:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:214329-214489:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:214730-214806:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:214885-214968:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:215056-215305:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:215456-215703:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:215827-215974:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:216045-216195:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:216299-216375:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:216450-216666:1:exon

TLE2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: TLE2
product: TLE family member 2, transcriptional corepressor, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_040537780.1
SIO_010081: TLE2
subclass of: SO_0000673
so part of: TLE2
location: join(205713..205756,205842..205930,206250..206313,207124..207168,208977..209039,209239..209313,209771..209963,210899..210915,211111..211212,211473..211517,212316..212465,213246..213375,214329..214489,214730..214806,214885..214968,215056..215305,215456..215703,215827..215974,216045..216195,216299..216375,216450..216666)
location: region:205713-216666:1
so has part: feature:205713-205756:1:exon
so has part: feature:205842-205930:1:exon
so has part: feature:206250-206313:1:exon
so has part: feature:207124-207168:1:exon
so has part: feature:208977-209039:1:exon
so has part: feature:209239-209313:1:exon
so has part: feature:209771-209963:1:exon
so has part: feature:210899-210915:1:exon
so has part: feature:211111-211212:1:exon
so has part: feature:211473-211517:1:exon
so has part: feature:212316-212465:1:exon
so has part: feature:213246-213375:1:exon
so has part: feature:214329-214489:1:exon
so has part: feature:214730-214806:1:exon
so has part: feature:214885-214968:1:exon
so has part: feature:215056-215305:1:exon
so has part: feature:215456-215703:1:exon
so has part: feature:215827-215974:1:exon
so has part: feature:216045-216195:1:exon
so has part: feature:216299-216375:1:exon
so has part: feature:216450-216666:1:exon

position:205713:1
position: 205713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:205713-205756:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:205842-205930:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:206250-206313:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:207124-207168:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:208977-209039:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:209239-209313:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:209771-209963:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:210899-210915:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:211111-211212:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:211473-211517:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:212316-212465:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:213246-213375:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:214329-214489:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:214730-214806:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:214885-214968:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:215056-215305:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:215456-215703:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:215827-215974:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:216045-216195:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:216299-216375:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:216450-216666:1:exon

TLE2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: TLE2
product: TLE family member 2, transcriptional corepressor, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_040537782.1
SIO_010081: TLE2
subclass of: SO_0000673
so part of: TLE2
location: join(205718..205756,205842..205930,206250..206313,207124..207168,208977..209039,209239..209313,209771..209963,210899..210915,211111..211212,211473..211517,212316..212465,213246..213375,214329..214489,214730..214806,215056..215305,215456..215703,215827..215974,216045..216195,216299..216375,216450..216666)
location: region:205718-216666:1
so has part: feature:205718-205756:1:exon
so has part: feature:205842-205930:1:exon
so has part: feature:206250-206313:1:exon
so has part: feature:207124-207168:1:exon
so has part: feature:208977-209039:1:exon
so has part: feature:209239-209313:1:exon
so has part: feature:209771-209963:1:exon
so has part: feature:210899-210915:1:exon
so has part: feature:211111-211212:1:exon
so has part: feature:211473-211517:1:exon
so has part: feature:212316-212465:1:exon
so has part: feature:213246-213375:1:exon
so has part: feature:214329-214489:1:exon
so has part: feature:214730-214806:1:exon
so has part: feature:215056-215305:1:exon
so has part: feature:215456-215703:1:exon
so has part: feature:215827-215974:1:exon
so has part: feature:216045-216195:1:exon
so has part: feature:216299-216375:1:exon
so has part: feature:216450-216666:1:exon

position:205718:1
position: 205718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:205718-205756:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:205842-205930:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:206250-206313:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:207124-207168:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:208977-209039:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:209239-209313:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:209771-209963:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:210899-210915:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:211111-211212:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:211473-211517:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:212316-212465:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:213246-213375:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:214329-214489:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:214730-214806:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:215056-215305:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:215456-215703:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:215827-215974:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:216045-216195:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:216299-216375:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:216450-216666:1:exon

TLE2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: TLE2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transducin-like enhancer protein 2 isoform X1
translation: MFPQGRQPPPPRPLKFSVPETCERLKEEFRLLQAQCHSLKLECEKLVSEKTEMQRHYVMYYEMSYGLNIEMHKQAEIVKRLNAICAQIVPLLTQEHQQQVLQAVERAKQVTMAELNSIVGQQQLQHLSHHVHPVALTPHPSSVQLPSLAGASSASGLLALSGALMAQSQLAAKEDRVAQDGESRERSPSRSISASPLESPPAEEQTGGAGLKRKREERDPAGHYDSDGDKSDYNLVVDEDPCSEPSSPSRAPSSQLPPAQDMAKSPASGGASGASSRSVTPLQLWDRGLLDPPASTSSVSPPPRDTLTPGPGPSSAALLRQPPAKALATDTTALRSPLSLSSPFTASFGLLPHAALNGELAAPGMYVGIHLPPQVSGAVMYGRSPMVAFESHPHLRASTLPASLSTVPAGKPCLLTNKELADYSWLQPLLARPLQVPSAHAYSFYVGTDGQMQPVPFPPDALLGSGIPRHARQLHTLAHGEVVCAVTISSSTQHVYTGGKGCVKVWDVRQPGTKTAVAQLDCLNRDNYIRSCKLLPDGRSLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIVVWDLQNQTMVRQFQGHTDGASCIDISNYGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGHCPTGEWLAVGMESSNVEILHVSKPDKYQLHLHESCVLSLKFATCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVNDKFIVTGSGDKKATVYEVLY
SIO_010081: TLE2
subclass of: SO_0000673
so part of: TLE2
location: join(205733..205756,205842..205930,206250..206313,207124..207168,208977..209039,209239..209313,209771..209963,210899..210915,211111..211212,211473..211517,212316..212465,213246..213375,214329..214489,214730..214806,214885..214968,215056..215305,215456..215703,215827..215974,216045..216195,216299..216375,216450..216557)
location: region:205733-216557:1
so has part: feature:205733-205756:1:exon
so has part: feature:205842-205930:1:exon
so has part: feature:206250-206313:1:exon
so has part: feature:207124-207168:1:exon
so has part: feature:208977-209039:1:exon
so has part: feature:209239-209313:1:exon
so has part: feature:209771-209963:1:exon
so has part: feature:210899-210915:1:exon
so has part: feature:211111-211212:1:exon
so has part: feature:211473-211517:1:exon
so has part: feature:212316-212465:1:exon
so has part: feature:213246-213375:1:exon
so has part: feature:214329-214489:1:exon
so has part: feature:214730-214806:1:exon
so has part: feature:214885-214968:1:exon
so has part: feature:215056-215305:1:exon
so has part: feature:215456-215703:1:exon
so has part: feature:215827-215974:1:exon
so has part: feature:216045-216195:1:exon
so has part: feature:216299-216375:1:exon
so has part: feature:216450-216557:1:exon

XP_040393714.1
type: Protein
SIO_000068: ncbiprotein

position:205733:1
position: 205733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:216557:1
position: 216557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:205733-205756:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:205842-205930:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:206250-206313:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:207124-207168:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:208977-209039:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:209239-209313:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:209771-209963:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:210899-210915:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:211111-211212:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:211473-211517:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:212316-212465:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:213246-213375:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:214329-214489:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:214730-214806:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:214885-214968:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:215056-215305:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:215456-215703:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:215827-215974:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:216045-216195:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:216299-216375:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:216450-216557:1:exon

TLE2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: TLE2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transducin-like enhancer protein 2 isoform X3
translation: MFPQGRQPPPPRPLKFSVPETCERLKEEFRLLQAQCHSLKLECEKLVSEKTEMQRHYVMYYEMSYGLNIEMHKQAEIVKRLNAICAQIVPLLTQEHQQQVLQAVERAKQVTMAELNSIVGQQQLQHLSHHVHPVALTPHPSSVQLPSLAGASSASGLLALSGALMAQSQLAAKEDRVAQDGESRERSPSRSISASPLESPPAEEQTGGAGLKRKREERDPAGHYDSDGDKSDYNLVVDEDPCSEPSSPSRAPSSQLPPAQDMAKSPASGGASGASSRSVTPLQLWDRGLLDPPASTSSVSPPPRDTLTPGPGPSSAALLRQPPAKALATDTTALRSPLSLSSPFTASFGLLPHAALNGELAAPGMYVGIHLPPQVSGAVMYGRSPMVAFESHPHLRASTLPASLSTVPAGKPAYSFYVGTDGQMQPVPFPPDALLGSGIPRHARQLHTLAHGEVVCAVTISSSTQHVYTGGKGCVKVWDVRQPGTKTAVAQLDCLNRDNYIRSCKLLPDGRSLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIVVWDLQNQTMVRQFQGHTDGASCIDISNYGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGHCPTGEWLAVGMESSNVEILHVSKPDKYQLHLHESCVLSLKFATCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVNDKFIVTGSGDKKATVYEVLY
SIO_010081: TLE2
subclass of: SO_0000673
so part of: TLE2
location: join(205733..205756,205842..205930,206250..206313,207124..207168,208977..209039,209239..209313,209771..209963,210899..210915,211111..211212,211473..211517,212316..212465,213246..213375,214329..214489,214730..214806,215056..215305,215456..215703,215827..215974,216045..216195,216299..216375,216450..216557)
location: region:205733-216557:1
so has part: feature:205733-205756:1:exon
so has part: feature:205842-205930:1:exon
so has part: feature:206250-206313:1:exon
so has part: feature:207124-207168:1:exon
so has part: feature:208977-209039:1:exon
so has part: feature:209239-209313:1:exon
so has part: feature:209771-209963:1:exon
so has part: feature:210899-210915:1:exon
so has part: feature:211111-211212:1:exon
so has part: feature:211473-211517:1:exon
so has part: feature:212316-212465:1:exon
so has part: feature:213246-213375:1:exon
so has part: feature:214329-214489:1:exon
so has part: feature:214730-214806:1:exon
so has part: feature:215056-215305:1:exon
so has part: feature:215456-215703:1:exon
so has part: feature:215827-215974:1:exon
so has part: feature:216045-216195:1:exon
so has part: feature:216299-216375:1:exon
so has part: feature:216450-216557:1:exon

XP_040393716.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:205733-205756:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:205842-205930:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:206250-206313:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:207124-207168:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:208977-209039:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:209239-209313:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:209771-209963:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:210899-210915:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:211111-211212:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:211473-211517:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:212316-212465:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:213246-213375:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:214329-214489:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:214730-214806:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:215056-215305:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:215456-215703:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:215827-215974:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:216045-216195:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:216299-216375:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:216450-216557:1:exon

TLE2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: TLE2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transducin-like enhancer protein 2 isoform X2
translation: MFPQGRQPPPPRPLKFSVPETCERLKEEFRLLQAQCHSLKLECEKLVSEKTEMQRHYVMYYEMSYGLNIEMHKQAEIVKRLNAICAQIVPLLTQEHQQQVLQAVERAKQVTMAELNSIVGQQLQHLSHHVHPVALTPHPSSVQLPSLAGASSASGLLALSGALMAQSQLAAKEDRVAQDGESRERSPSRSISASPLESPPAEEQTGGAGLKRKREERDPAGHYDSDGDKSDYNLVVDEDPCSEPSSPSRAPSSQLPPAQDMAKSPASGGASGASSRSVTPLQLWDRGLLDPPASTSSVSPPPRDTLTPGPGPSSAALLRQPPAKALATDTTALRSPLSLSSPFTASFGLLPHAALNGELAAPGMYVGIHLPPQVSGAVMYGRSPMVAFESHPHLRASTLPASLSTVPAGKPCLLTNKELADYSWLQPLLARPLQVPSAHAYSFYVGTDGQMQPVPFPPDALLGSGIPRHARQLHTLAHGEVVCAVTISSSTQHVYTGGKGCVKVWDVRQPGTKTAVAQLDCLNRDNYIRSCKLLPDGRSLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIVVWDLQNQTMVRQFQGHTDGASCIDISNYGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGHCPTGEWLAVGMESSNVEILHVSKPDKYQLHLHESCVLSLKFATCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVNDKFIVTGSGDKKATVYEVLY
SIO_010081: TLE2
subclass of: SO_0000673
so part of: TLE2
location: join(205733..205756,205842..205930,206250..206313,207124..207168,208977..209039,209239..209313,209774..209963,210899..210915,211111..211212,211473..211517,212316..212465,213246..213375,214329..214489,214730..214806,214885..214968,215056..215305,215456..215703,215827..215974,216045..216195,216299..216375,216450..216557)
location: region:205733-216557:1
so has part: feature:205733-205756:1:exon
so has part: feature:205842-205930:1:exon
so has part: feature:206250-206313:1:exon
so has part: feature:207124-207168:1:exon
so has part: feature:208977-209039:1:exon
so has part: feature:209239-209313:1:exon
so has part: feature:209774-209963:1:exon
so has part: feature:210899-210915:1:exon
so has part: feature:211111-211212:1:exon
so has part: feature:211473-211517:1:exon
so has part: feature:212316-212465:1:exon
so has part: feature:213246-213375:1:exon
so has part: feature:214329-214489:1:exon
so has part: feature:214730-214806:1:exon
so has part: feature:214885-214968:1:exon
so has part: feature:215056-215305:1:exon
so has part: feature:215456-215703:1:exon
so has part: feature:215827-215974:1:exon
so has part: feature:216045-216195:1:exon
so has part: feature:216299-216375:1:exon
so has part: feature:216450-216557:1:exon

XP_040393715.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:205733-205756:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:205842-205930:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:206250-206313:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:207124-207168:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:208977-209039:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:209239-209313:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:209774-209963:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:210899-210915:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:211111-211212:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:211473-211517:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:212316-212465:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:213246-213375:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:214329-214489:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:214730-214806:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:214885-214968:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:215056-215305:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:215456-215703:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:215827-215974:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:216045-216195:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:216299-216375:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:216450-216557:1:exon

TLE2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: TLE2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transducin-like enhancer protein 2 isoform X4
translation: MQRHYVMYYEMSYGLNIEMHKQAEIVKRLNAICAQIVPLLTQEHQQQVLQAVERAKQVTMAELNSIVGQQQLQHLSHHVHPVALTPHPSSVQLPSLAGASSASGLLALSGALMAQSQLAAKEDRVAQDGESRERSPSRSISASPLESPPAEEQTGGAGLKRKREERDPAGHYDSDGDKSDYNLVVDEDPCSEPSSPSRAPSSQLPPAQDMAKSPASGGASGASSRSVTPLQLWDRGLLDPPASTSSVSPPPRDTLTPGPGPSSAALLRQPPAKALATDTTALRSPLSLSSPFTASFGLLPHAALNGELAAPGMYVGIHLPPQVSGAVMYGRSPMVAFESHPHLRASTLPASLSTVPAGKPCLLTNKELADYSWLQPLLARPLQVPSAHAYSFYVGTDGQMQPVPFPPDALLGSGIPRHARQLHTLAHGEVVCAVTISSSTQHVYTGGKGCVKVWDVRQPGTKTAVAQLDCLNRDNYIRSCKLLPDGRSLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIVVWDLQNQTMVRQFQGHTDGASCIDISNYGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGHCPTGEWLAVGMESSNVEILHVSKPDKYQLHLHESCVLSLKFATCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVNDKFIVTGSGDKKATVYEVLY
SIO_010081: TLE2
subclass of: SO_0000673
so part of: TLE2
location: join(206293..206313,207124..207168,208977..209039,209239..209313,209771..209963,210899..210915,211111..211212,211473..211517,212316..212465,213246..213375,214329..214489,214730..214806,214885..214968,215056..215305,215456..215703,215827..215974,216045..216195,216299..216375,216450..216557)
location: region:206293-216557:1
so has part: feature:206293-206313:1:exon
so has part: feature:207124-207168:1:exon
so has part: feature:208977-209039:1:exon
so has part: feature:209239-209313:1:exon
so has part: feature:209771-209963:1:exon
so has part: feature:210899-210915:1:exon
so has part: feature:211111-211212:1:exon
so has part: feature:211473-211517:1:exon
so has part: feature:212316-212465:1:exon
so has part: feature:213246-213375:1:exon
so has part: feature:214329-214489:1:exon
so has part: feature:214730-214806:1:exon
so has part: feature:214885-214968:1:exon
so has part: feature:215056-215305:1:exon
so has part: feature:215456-215703:1:exon
so has part: feature:215827-215974:1:exon
so has part: feature:216045-216195:1:exon
so has part: feature:216299-216375:1:exon
so has part: feature:216450-216557:1:exon

XP_040393717.1
type: Protein
SIO_000068: ncbiprotein

position:206293:1
position: 206293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:206293-206313:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:207124-207168:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:208977-209039:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:209239-209313:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:209771-209963:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:210899-210915:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:211111-211212:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:211473-211517:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:212316-212465:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:213246-213375:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:214329-214489:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:214730-214806:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:214885-214968:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:215056-215305:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:215456-215703:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:215827-215974:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:216045-216195:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:216299-216375:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:216450-216557:1:exon

TLE2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: TLE2
product: TLE family member 2, transcriptional corepressor, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_040537784.1
SIO_010081: TLE2
subclass of: SO_0000673
so part of: TLE2
location: join(206449..206556,207124..207168,208977..209039,209239..209313,209771..209963,210899..210915,211111..211212,211473..211517,212316..212465,213246..213375,214329..214489,214730..214806,214885..214968,215056..215305,215456..215703,215827..215974,216045..216195,216299..216375,216450..216666)
location: region:206449-216666:1
so has part: feature:206449-206556:1:exon
so has part: feature:207124-207168:1:exon
so has part: feature:208977-209039:1:exon
so has part: feature:209239-209313:1:exon
so has part: feature:209771-209963:1:exon
so has part: feature:210899-210915:1:exon
so has part: feature:211111-211212:1:exon
so has part: feature:211473-211517:1:exon
so has part: feature:212316-212465:1:exon
so has part: feature:213246-213375:1:exon
so has part: feature:214329-214489:1:exon
so has part: feature:214730-214806:1:exon
so has part: feature:214885-214968:1:exon
so has part: feature:215056-215305:1:exon
so has part: feature:215456-215703:1:exon
so has part: feature:215827-215974:1:exon
so has part: feature:216045-216195:1:exon
so has part: feature:216299-216375:1:exon
so has part: feature:216450-216666:1:exon

position:206449:1
position: 206449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:206449-206556:1:exon

position:206556:1
position: 206556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:207124-207168:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:208977-209039:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:209239-209313:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:209771-209963:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:210899-210915:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:211111-211212:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:211473-211517:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:212316-212465:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:213246-213375:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:214329-214489:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:214730-214806:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:214885-214968:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:215056-215305:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:215456-215703:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:215827-215974:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:216045-216195:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:216299-216375:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:216450-216666:1:exon

TLE2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: TLE2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transducin-like enhancer protein 2 isoform X5
translation: MSYGLNIEMHKQAEIVKRLNAICAQIVPLLTQEHQQQVLQAVERAKQVTMAELNSIVGQQQLQHLSHHVHPVALTPHPSSVQLPSLAGASSASGLLALSGALMAQSQLAAKEDRVAQDGESRERSPSRSISASPLESPPAEEQTGGAGLKRKREERDPAGHYDSDGDKSDYNLVVDEDPCSEPSSPSRAPSSQLPPAQDMAKSPASGGASGASSRSVTPLQLWDRGLLDPPASTSSVSPPPRDTLTPGPGPSSAALLRQPPAKALATDTTALRSPLSLSSPFTASFGLLPHAALNGELAAPGMYVGIHLPPQVSGAVMYGRSPMVAFESHPHLRASTLPASLSTVPAGKPCLLTNKELADYSWLQPLLARPLQVPSAHAYSFYVGTDGQMQPVPFPPDALLGSGIPRHARQLHTLAHGEVVCAVTISSSTQHVYTGGKGCVKVWDVRQPGTKTAVAQLDCLNRDNYIRSCKLLPDGRSLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIVVWDLQNQTMVRQFQGHTDGASCIDISNYGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGHCPTGEWLAVGMESSNVEILHVSKPDKYQLHLHESCVLSLKFATCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVNDKFIVTGSGDKKATVYEVLY
SIO_010081: TLE2
subclass of: SO_0000673
so part of: TLE2
location: join(207133..207168,208977..209039,209239..209313,209771..209963,210899..210915,211111..211212,211473..211517,212316..212465,213246..213375,214329..214489,214730..214806,214885..214968,215056..215305,215456..215703,215827..215974,216045..216195,216299..216375,216450..216557)
location: region:207133-216557:1
so has part: feature:207133-207168:1:exon
so has part: feature:208977-209039:1:exon
so has part: feature:209239-209313:1:exon
so has part: feature:209771-209963:1:exon
so has part: feature:210899-210915:1:exon
so has part: feature:211111-211212:1:exon
so has part: feature:211473-211517:1:exon
so has part: feature:212316-212465:1:exon
so has part: feature:213246-213375:1:exon
so has part: feature:214329-214489:1:exon
so has part: feature:214730-214806:1:exon
so has part: feature:214885-214968:1:exon
so has part: feature:215056-215305:1:exon
so has part: feature:215456-215703:1:exon
so has part: feature:215827-215974:1:exon
so has part: feature:216045-216195:1:exon
so has part: feature:216299-216375:1:exon
so has part: feature:216450-216557:1:exon

XP_040393718.1
type: Protein
SIO_000068: ncbiprotein

position:207133:1
position: 207133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:207133-207168:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:208977-209039:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:209239-209313:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:209771-209963:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:210899-210915:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:211111-211212:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:211473-211517:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:212316-212465:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:213246-213375:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:214329-214489:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:214730-214806:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:214885-214968:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:215056-215305:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:215456-215703:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:215827-215974:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:216045-216195:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:216299-216375:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:216450-216557:1:exon

LOC121060228
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: LOC121060228
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(217377..228163)
location: region:217377-228163:-1
so has part: feature:217377-228163:-1:exon
subclass of: SO_0000010

121060228
type: Gene
SIO_000068: ncbigene

position:217377:-1
position: 217377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:228163:-1
position: 228163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:217377-228163:-1:exon

LOC121060228
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060228
product: transducin-like enhancer protein 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 7 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_040537840.1
SIO_010081: LOC121060228
subclass of: SO_0000673
so part of: LOC121060228
location: complement(join(217377..217878,218031..218107,218352..218502,218572..218719,218821..219068,219984..220233,220478..220811,220918..221047,221322..221477,221687..221731,221872..221976,222326..222342,222611..222806,223361..223402,223507..223569,225609..225653,225995..226058,226738..226886,227505..227629,228104..228163))
location: region:217377-228163:-1
so has part: feature:228104-228163:-1:exon
so has part: feature:227505-227629:-1:exon
so has part: feature:226738-226886:-1:exon
so has part: feature:225995-226058:-1:exon
so has part: feature:225609-225653:-1:exon
so has part: feature:223507-223569:-1:exon
so has part: feature:223361-223402:-1:exon
so has part: feature:222611-222806:-1:exon
so has part: feature:222326-222342:-1:exon
so has part: feature:221872-221976:-1:exon
so has part: feature:221687-221731:-1:exon
so has part: feature:221322-221477:-1:exon
so has part: feature:220918-221047:-1:exon
so has part: feature:220478-220811:-1:exon
so has part: feature:219984-220233:-1:exon
so has part: feature:218821-219068:-1:exon
so has part: feature:218572-218719:-1:exon
so has part: feature:218352-218502:-1:exon
so has part: feature:218031-218107:-1:exon
so has part: feature:217377-217878:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:228104-228163:-1:exon

position:228104:-1
position: 228104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:227505-227629:-1:exon

position:227505:-1
position: 227505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:227629:-1
position: 227629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:226738-226886:-1:exon

position:226738:-1
position: 226738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:226886:-1
position: 226886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:225995-226058:-1:exon

position:225995:-1
position: 225995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:226058:-1
position: 226058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:225609-225653:-1:exon

position:225609:-1
position: 225609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:225653:-1
position: 225653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:223507-223569:-1:exon

position:223507:-1
position: 223507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:223569:-1
position: 223569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:223361-223402:-1:exon

position:223361:-1
position: 223361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:223402:-1
position: 223402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:222611-222806:-1:exon

position:222611:-1
position: 222611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:222806:-1
position: 222806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:222326-222342:-1:exon

position:222326:-1
position: 222326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:222342:-1
position: 222342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:221872-221976:-1:exon

position:221872:-1
position: 221872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:221976:-1
position: 221976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:221687-221731:-1:exon

position:221687:-1
position: 221687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:221731:-1
position: 221731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:221322-221477:-1:exon

position:221322:-1
position: 221322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:221477:-1
position: 221477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:220918-221047:-1:exon

position:220918:-1
position: 220918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:221047:-1
position: 221047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:220478-220811:-1:exon

position:220478:-1
position: 220478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:220811:-1
position: 220811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:219984-220233:-1:exon

position:219984:-1
position: 219984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:220233:-1
position: 220233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:218821-219068:-1:exon

position:218821:-1
position: 218821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:219068:-1
position: 219068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:218572-218719:-1:exon

position:218572:-1
position: 218572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:218719:-1
position: 218719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:218352-218502:-1:exon

position:218352:-1
position: 218352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:218502:-1
position: 218502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:218031-218107:-1:exon

position:218031:-1
position: 218031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:218107:-1
position: 218107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:217377-217878:-1:exon

position:217878:-1
position: 217878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121060228
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060228
product: transducin-like enhancer protein 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 long SRA reads, 30 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_040537841.1
SIO_010081: LOC121060228
subclass of: SO_0000673
so part of: LOC121060228
location: complement(join(217377..217878,218031..218107,218352..218502,218572..218719,218821..219068,219984..220233,220478..220554,220627..220811,220918..221047,221322..221477,221687..221731,221872..221976,222326..222342,222611..222806,223328..223402,223507..223569,225609..225653,225995..226058,226738..226886,227505..227629,228104..228163))
location: region:217377-228163:-1
so has part: feature:228104-228163:-1:exon
so has part: feature:227505-227629:-1:exon
so has part: feature:226738-226886:-1:exon
so has part: feature:225995-226058:-1:exon
so has part: feature:225609-225653:-1:exon
so has part: feature:223507-223569:-1:exon
so has part: feature:223328-223402:-1:exon
so has part: feature:222611-222806:-1:exon
so has part: feature:222326-222342:-1:exon
so has part: feature:221872-221976:-1:exon
so has part: feature:221687-221731:-1:exon
so has part: feature:221322-221477:-1:exon
so has part: feature:220918-221047:-1:exon
so has part: feature:220627-220811:-1:exon
so has part: feature:220478-220554:-1:exon
so has part: feature:219984-220233:-1:exon
so has part: feature:218821-219068:-1:exon
so has part: feature:218572-218719:-1:exon
so has part: feature:218352-218502:-1:exon
so has part: feature:218031-218107:-1:exon
so has part: feature:217377-217878:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:228104-228163:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:227505-227629:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:226738-226886:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:225995-226058:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:225609-225653:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:223507-223569:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:223328-223402:-1:exon

position:223328:-1
position: 223328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:222611-222806:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:222326-222342:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:221872-221976:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:221687-221731:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:221322-221477:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:220918-221047:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:220627-220811:-1:exon

position:220627:-1
position: 220627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:220478-220554:-1:exon

position:220554:-1
position: 220554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:219984-220233:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:218821-219068:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:218572-218719:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:218352-218502:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:218031-218107:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:217377-217878:-1:exon

LOC121060228
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060228
product: transducin-like enhancer protein 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 17 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_040537839.1
SIO_010081: LOC121060228
subclass of: SO_0000673
so part of: LOC121060228
location: complement(join(217377..217878,218031..218107,218352..218502,218572..218719,218821..219068,219984..220233,220478..220811,220918..221047,221322..221477,221687..221731,221872..221976,222326..222342,222611..222806,223328..223402,223507..223569,225609..225653,225995..226058,226738..226886,227505..227629,228104..228163))
location: region:217377-228163:-1
so has part: feature:228104-228163:-1:exon
so has part: feature:227505-227629:-1:exon
so has part: feature:226738-226886:-1:exon
so has part: feature:225995-226058:-1:exon
so has part: feature:225609-225653:-1:exon
so has part: feature:223507-223569:-1:exon
so has part: feature:223328-223402:-1:exon
so has part: feature:222611-222806:-1:exon
so has part: feature:222326-222342:-1:exon
so has part: feature:221872-221976:-1:exon
so has part: feature:221687-221731:-1:exon
so has part: feature:221322-221477:-1:exon
so has part: feature:220918-221047:-1:exon
so has part: feature:220478-220811:-1:exon
so has part: feature:219984-220233:-1:exon
so has part: feature:218821-219068:-1:exon
so has part: feature:218572-218719:-1:exon
so has part: feature:218352-218502:-1:exon
so has part: feature:218031-218107:-1:exon
so has part: feature:217377-217878:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:228104-228163:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:227505-227629:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:226738-226886:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:225995-226058:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:225609-225653:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:223507-223569:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:223328-223402:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:222611-222806:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:222326-222342:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:221872-221976:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:221687-221731:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:221322-221477:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:220918-221047:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:220478-220811:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:219984-220233:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:218821-219068:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:218572-218719:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:218352-218502:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:218031-218107:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:217377-217878:-1:exon

LOC121060228
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060228
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transducin-like enhancer protein 1 isoform X2
translation: MFPQNRPPAHLQAPSAASGTAVAAGTIPATPQSLKLTYPETLDRIKEEFQFLQNQYHSLKLECEKLATEKTEIQRHYVMYYEMSYGLNIEMHKQTEIAKRLNVICAQLIPFLSQEHQQQVVQAVERAKQHQLQTQHLSHHVPPIPLTPHPSGMQPAGLAGLGSASGLLALSGALGAQAQLLAKDDRGVHDTEHRERDPGPSSLALPNGERARAISEYLSNSKKRKVEEKDFVTDYGSDADKSEDNLVVDEDPSSPHSVHSYSSRENGVEKLPLGRKEAVPLSPTSMASSSSTSPSRSKDVPTVEKAGTPSLKSSTPTSQGDAVTPGSSGAQQFRPAAPKAPVDPLALGLRTPLGVQSPYSATFGMAHPAVNGDMAGAGAYASLHLVSPQLNGTAAAVGAGSYGRSPLVREPPPRGAWGRGLGAALTPCPLQVGYDPHPHMRVPGLAAGMQVGTSGKPAYSFHVSADGQMQPVPFPPDALLGSGIPRHARQLHTLAHGEVVCAVTISNSTRHVYTGGKGCVKVWDVGQPGTKTAVAQLDCLNRDNYIRSCKLLPDGRSLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIVVWDLQNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGHCPTGEWLAVGMESSNVEILHVSKPDKYQLHLHESCVLSLKFAACGKWFVSTGKDNLLNAWRTPYGASIFQSKETSSVLSCDVSTDDQFIVTGSGDKKATVYEVIY
SIO_010081: LOC121060228
subclass of: SO_0000673
so part of: LOC121060228
location: complement(join(217771..217878,218031..218107,218352..218502,218572..218719,218821..219068,219984..220233,220478..220811,220918..221047,221322..221477,221687..221731,221872..221976,222326..222342,222611..222806,223361..223402,223507..223569,225609..225653,225995..226058,226738..226886,227505..227528))
location: region:217771-227528:-1
so has part: feature:227505-227528:-1:exon
so has part: feature:226738-226886:-1:exon
so has part: feature:225995-226058:-1:exon
so has part: feature:225609-225653:-1:exon
so has part: feature:223507-223569:-1:exon
so has part: feature:223361-223402:-1:exon
so has part: feature:222611-222806:-1:exon
so has part: feature:222326-222342:-1:exon
so has part: feature:221872-221976:-1:exon
so has part: feature:221687-221731:-1:exon
so has part: feature:221322-221477:-1:exon
so has part: feature:220918-221047:-1:exon
so has part: feature:220478-220811:-1:exon
so has part: feature:219984-220233:-1:exon
so has part: feature:218821-219068:-1:exon
so has part: feature:218572-218719:-1:exon
so has part: feature:218352-218502:-1:exon
so has part: feature:218031-218107:-1:exon
so has part: feature:217771-217878:-1:exon

XP_040393774.1
type: Protein
SIO_000068: ncbiprotein

position:217771:-1
position: 217771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:227528:-1
position: 227528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:227505-227528:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:226738-226886:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:225995-226058:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:225609-225653:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:223507-223569:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:223361-223402:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:222611-222806:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:222326-222342:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:221872-221976:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:221687-221731:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:221322-221477:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:220918-221047:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:220478-220811:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:219984-220233:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:218821-219068:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:218572-218719:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:218352-218502:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:218031-218107:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:217771-217878:-1:exon

LOC121060228
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060228
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transducin-like enhancer protein 1 isoform X3
translation: MFPQNRPPAHLQAPSAASGTAVAAGTIPATPQSLKLTYPETLDRIKEEFQFLQNQYHSLKLECEKLATEKTEIQRHYVMYYEMSYGLNIEMHKQTEIAKRLNVICAQLIPFLSQEHQQQVVQAVERAKQVTMTDLNAAIGHQLQTQHLSHHVPPIPLTPHPSGMQPAGLAGLGSASGLLALSGALGAQAQLLAKDDRGVHDTEHRERDPGPSSLALPNGERARAISEYLSNSKKRKVEEKDFVTDYGSDADKSEDNLVVDEDPSSPHSVHSYSSRENGVEKLPLGRKEAVPLSPTSMASSSSTSPSRSKDVPTVEKAGTPSLKSSTPTSQGDAVTPGSSGAQQFRPAAPKAPVDPLALGLRTPLGVQSPYSATFGMAHPAVNGDMAGAGAYASLHLVSPQLNGTAAAVGAGSYGRSPLVGYDPHPHMRVPGLAAGMQVGTSGKPAYSFHVSADGQMQPVPFPPDALLGSGIPRHARQLHTLAHGEVVCAVTISNSTRHVYTGGKGCVKVWDVGQPGTKTAVAQLDCLNRDNYIRSCKLLPDGRSLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIVVWDLQNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGHCPTGEWLAVGMESSNVEILHVSKPDKYQLHLHESCVLSLKFAACGKWFVSTGKDNLLNAWRTPYGASIFQSKETSSVLSCDVSTDDQFIVTGSGDKKATVYEVIY
SIO_010081: LOC121060228
subclass of: SO_0000673
so part of: LOC121060228
location: complement(join(217771..217878,218031..218107,218352..218502,218572..218719,218821..219068,219984..220233,220478..220554,220627..220811,220918..221047,221322..221477,221687..221731,221872..221976,222326..222342,222611..222806,223328..223402,223507..223569,225609..225653,225995..226058,226738..226886,227505..227528))
location: region:217771-227528:-1
so has part: feature:227505-227528:-1:exon
so has part: feature:226738-226886:-1:exon
so has part: feature:225995-226058:-1:exon
so has part: feature:225609-225653:-1:exon
so has part: feature:223507-223569:-1:exon
so has part: feature:223328-223402:-1:exon
so has part: feature:222611-222806:-1:exon
so has part: feature:222326-222342:-1:exon
so has part: feature:221872-221976:-1:exon
so has part: feature:221687-221731:-1:exon
so has part: feature:221322-221477:-1:exon
so has part: feature:220918-221047:-1:exon
so has part: feature:220627-220811:-1:exon
so has part: feature:220478-220554:-1:exon
so has part: feature:219984-220233:-1:exon
so has part: feature:218821-219068:-1:exon
so has part: feature:218572-218719:-1:exon
so has part: feature:218352-218502:-1:exon
so has part: feature:218031-218107:-1:exon
so has part: feature:217771-217878:-1:exon

XP_040393775.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:227505-227528:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:226738-226886:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:225995-226058:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:225609-225653:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:223507-223569:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:223328-223402:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:222611-222806:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:222326-222342:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:221872-221976:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:221687-221731:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:221322-221477:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:220918-221047:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:220627-220811:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:220478-220554:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:219984-220233:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:218821-219068:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:218572-218719:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:218352-218502:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:218031-218107:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:217771-217878:-1:exon

LOC121060228
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060228
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transducin-like enhancer protein 1 isoform X1
translation: MFPQNRPPAHLQAPSAASGTAVAAGTIPATPQSLKLTYPETLDRIKEEFQFLQNQYHSLKLECEKLATEKTEIQRHYVMYYEMSYGLNIEMHKQTEIAKRLNVICAQLIPFLSQEHQQQVVQAVERAKQVTMTDLNAAIGHQLQTQHLSHHVPPIPLTPHPSGMQPAGLAGLGSASGLLALSGALGAQAQLLAKDDRGVHDTEHRERDPGPSSLALPNGERARAISEYLSNSKKRKVEEKDFVTDYGSDADKSEDNLVVDEDPSSPHSVHSYSSRENGVEKLPLGRKEAVPLSPTSMASSSSTSPSRSKDVPTVEKAGTPSLKSSTPTSQGDAVTPGSSGAQQFRPAAPKAPVDPLALGLRTPLGVQSPYSATFGMAHPAVNGDMAGAGAYASLHLVSPQLNGTAAAVGAGSYGRSPLVREPPPRGAWGRGLGAALTPCPLQVGYDPHPHMRVPGLAAGMQVGTSGKPAYSFHVSADGQMQPVPFPPDALLGSGIPRHARQLHTLAHGEVVCAVTISNSTRHVYTGGKGCVKVWDVGQPGTKTAVAQLDCLNRDNYIRSCKLLPDGRSLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIVVWDLQNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGHCPTGEWLAVGMESSNVEILHVSKPDKYQLHLHESCVLSLKFAACGKWFVSTGKDNLLNAWRTPYGASIFQSKETSSVLSCDVSTDDQFIVTGSGDKKATVYEVIY
SIO_010081: LOC121060228
subclass of: SO_0000673
so part of: LOC121060228
location: complement(join(217771..217878,218031..218107,218352..218502,218572..218719,218821..219068,219984..220233,220478..220811,220918..221047,221322..221477,221687..221731,221872..221976,222326..222342,222611..222806,223328..223402,223507..223569,225609..225653,225995..226058,226738..226886,227505..227528))
location: region:217771-227528:-1
so has part: feature:227505-227528:-1:exon
so has part: feature:226738-226886:-1:exon
so has part: feature:225995-226058:-1:exon
so has part: feature:225609-225653:-1:exon
so has part: feature:223507-223569:-1:exon
so has part: feature:223328-223402:-1:exon
so has part: feature:222611-222806:-1:exon
so has part: feature:222326-222342:-1:exon
so has part: feature:221872-221976:-1:exon
so has part: feature:221687-221731:-1:exon
so has part: feature:221322-221477:-1:exon
so has part: feature:220918-221047:-1:exon
so has part: feature:220478-220811:-1:exon
so has part: feature:219984-220233:-1:exon
so has part: feature:218821-219068:-1:exon
so has part: feature:218572-218719:-1:exon
so has part: feature:218352-218502:-1:exon
so has part: feature:218031-218107:-1:exon
so has part: feature:217771-217878:-1:exon

XP_040393773.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:227505-227528:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:226738-226886:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:225995-226058:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:225609-225653:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:223507-223569:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:223328-223402:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:222611-222806:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:222326-222342:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:221872-221976:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:221687-221731:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:221322-221477:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:220918-221047:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:220478-220811:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:219984-220233:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:218821-219068:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:218572-218719:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:218352-218502:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:218031-218107:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:217771-217878:-1:exon

PLPP2
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: PLPP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(234685..239254)
location: region:234685-239254:-1
so has part: feature:234685-239254:-1:exon
subclass of: SO_0000010

121060237
type: Gene
SIO_000068: ncbigene

position:234685:-1
position: 234685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:239254:-1
position: 239254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234685-239254:-1:exon

PLPP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PLPP2
product: phospholipid phosphatase 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 long SRA reads, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537851.1
SIO_010081: PLPP2
subclass of: SO_0000673
so part of: PLPP2
location: complement(join(234685..235683,235863..236039,236118..236175,236292..236569,236800..236951,239083..239254))
location: region:234685-239254:-1
so has part: feature:239083-239254:-1:exon
so has part: feature:236800-236951:-1:exon
so has part: feature:236292-236569:-1:exon
so has part: feature:236118-236175:-1:exon
so has part: feature:235863-236039:-1:exon
so has part: feature:234685-235683:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:239083-239254:-1:exon

position:239083:-1
position: 239083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:236800-236951:-1:exon

position:236800:-1
position: 236800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:236951:-1
position: 236951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:236292-236569:-1:exon

position:236292:-1
position: 236292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:236569:-1
position: 236569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:236118-236175:-1:exon

position:236118:-1
position: 236118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:236175:-1
position: 236175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:235863-236039:-1:exon

position:235863:-1
position: 235863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:236039:-1
position: 236039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:234685-235683:-1:exon

position:235683:-1
position: 235683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PLPP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PLPP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phospholipid phosphatase 2
translation: MERRKVFVALDVLCVVVASLPFVILTLVNSPYKRGFYCNDDSIRYPYKADTITHGLMAGVTITCTVLIISSGEAYLVYTERLYSKSEFNNYLAALYKVVGTFLFGGAISQSLTDLAKYMIGRLRPNFLAVCNPDWSRVNCSTYVQLENICLGEGRNVTESRLSFYSGHSSFGMYCMMFLALYVQARLVGKWARLLRPTIQFFLIAFAIYVGYTRVSDYKHHWSDVLAGLLQGALIAVLIVRYVSDFFKHRPPRQCDEQDPERRPSLPLTRSDSEHNHYSYRGTP
SIO_010081: PLPP2
subclass of: SO_0000673
so part of: PLPP2
location: complement(join(235546..235683,235863..236039,236118..236175,236292..236569,236800..236951,239083..239134))
location: region:235546-239134:-1
so has part: feature:239083-239134:-1:exon
so has part: feature:236800-236951:-1:exon
so has part: feature:236292-236569:-1:exon
so has part: feature:236118-236175:-1:exon
so has part: feature:235863-236039:-1:exon
so has part: feature:235546-235683:-1:exon

XP_040393785.1
type: Protein
SIO_000068: ncbiprotein

position:235546:-1
position: 235546
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:239134:-1
position: 239134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239083-239134:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:236800-236951:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:236292-236569:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:236118-236175:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:235863-236039:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:235546-235683:-1:exon

MIER2
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: MIER2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(243530..259293)
location: region:243530-259293:-1
so has part: feature:243530-259293:-1:exon
subclass of: SO_0000010

121060211
type: Gene
SIO_000068: ncbigene

position:243530:-1
position: 243530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:259293:-1
position: 259293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:243530-259293:-1:exon

MIER2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: MIER2
product: MIER family member 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_040537796.1
SIO_010081: MIER2
subclass of: SO_0000673
so part of: MIER2
location: complement(join(243530..245969,246823..246959,247953..248080,248883..248977,249075..249156,249913..250066,251700..251767,252448..252557,253209..253332,253982..254107,254702..254853,255411..255498,256055..256184,259247..259293))
location: region:243530-259293:-1
so has part: feature:259247-259293:-1:exon
so has part: feature:256055-256184:-1:exon
so has part: feature:255411-255498:-1:exon
so has part: feature:254702-254853:-1:exon
so has part: feature:253982-254107:-1:exon
so has part: feature:253209-253332:-1:exon
so has part: feature:252448-252557:-1:exon
so has part: feature:251700-251767:-1:exon
so has part: feature:249913-250066:-1:exon
so has part: feature:249075-249156:-1:exon
so has part: feature:248883-248977:-1:exon
so has part: feature:247953-248080:-1:exon
so has part: feature:246823-246959:-1:exon
so has part: feature:243530-245969:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:259247-259293:-1:exon

position:259247:-1
position: 259247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:256055-256184:-1:exon

position:256055:-1
position: 256055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:256184:-1
position: 256184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:255411-255498:-1:exon

position:255411:-1
position: 255411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:255498:-1
position: 255498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:254702-254853:-1:exon

position:254702:-1
position: 254702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:254853:-1
position: 254853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:253982-254107:-1:exon

position:253982:-1
position: 253982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:254107:-1
position: 254107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:253209-253332:-1:exon

position:253209:-1
position: 253209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:253332:-1
position: 253332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:252448-252557:-1:exon

position:252448:-1
position: 252448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:252557:-1
position: 252557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:251700-251767:-1:exon

position:251700:-1
position: 251700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:251767:-1
position: 251767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:249913-250066:-1:exon

position:249913:-1
position: 249913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:250066:-1
position: 250066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:249075-249156:-1:exon

position:249075:-1
position: 249075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:249156:-1
position: 249156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:248883-248977:-1:exon

position:248883:-1
position: 248883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:248977:-1
position: 248977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:247953-248080:-1:exon

position:247953:-1
position: 247953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:248080:-1
position: 248080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:246823-246959:-1:exon

position:246823:-1
position: 246823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:246959:-1
position: 246959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:243530-245969:-1:exon

position:245969:-1
position: 245969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MIER2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: MIER2
product: MIER family member 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_040537800.1
SIO_010081: MIER2
subclass of: SO_0000673
so part of: MIER2
location: complement(join(243530..245969,246823..246959,247953..248080,248883..248977,249075..249156,249913..250066,251700..251767,252448..252557,253209..253332,253982..254107,254702..254853,255411..255498,259247..259275))
location: region:243530-259275:-1
so has part: feature:259247-259275:-1:exon
so has part: feature:255411-255498:-1:exon
so has part: feature:254702-254853:-1:exon
so has part: feature:253982-254107:-1:exon
so has part: feature:253209-253332:-1:exon
so has part: feature:252448-252557:-1:exon
so has part: feature:251700-251767:-1:exon
so has part: feature:249913-250066:-1:exon
so has part: feature:249075-249156:-1:exon
so has part: feature:248883-248977:-1:exon
so has part: feature:247953-248080:-1:exon
so has part: feature:246823-246959:-1:exon
so has part: feature:243530-245969:-1:exon

position:259275:-1
position: 259275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:259247-259275:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:255411-255498:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:254702-254853:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:253982-254107:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:253209-253332:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:252448-252557:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:251700-251767:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:249913-250066:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:249075-249156:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:248883-248977:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:247953-248080:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:246823-246959:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:243530-245969:-1:exon

MIER2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: MIER2
product: MIER family member 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_040537797.1
SIO_010081: MIER2
subclass of: SO_0000673
so part of: MIER2
location: complement(join(243530..245969,246823..246959,247953..248080,248883..248977,249075..249156,249913..250066,251700..251767,252448..252557,253209..253332,253982..254107,254702..254853,255411..255498,256055..256184,258217..258399,259247..259266))
location: region:243530-259266:-1
so has part: feature:259247-259266:-1:exon
so has part: feature:258217-258399:-1:exon
so has part: feature:256055-256184:-1:exon
so has part: feature:255411-255498:-1:exon
so has part: feature:254702-254853:-1:exon
so has part: feature:253982-254107:-1:exon
so has part: feature:253209-253332:-1:exon
so has part: feature:252448-252557:-1:exon
so has part: feature:251700-251767:-1:exon
so has part: feature:249913-250066:-1:exon
so has part: feature:249075-249156:-1:exon
so has part: feature:248883-248977:-1:exon
so has part: feature:247953-248080:-1:exon
so has part: feature:246823-246959:-1:exon
so has part: feature:243530-245969:-1:exon

position:259266:-1
position: 259266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:259247-259266:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:258217-258399:-1:exon

position:258217:-1
position: 258217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:258399:-1
position: 258399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:256055-256184:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:255411-255498:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:254702-254853:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:253982-254107:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:253209-253332:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:252448-252557:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:251700-251767:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:249913-250066:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:249075-249156:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:248883-248977:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:247953-248080:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:246823-246959:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:243530-245969:-1:exon

MIER2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: MIER2
product: MIER family member 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_040537798.1
SIO_010081: MIER2
subclass of: SO_0000673
so part of: MIER2
location: complement(join(243530..245969,246823..246959,247977..248080,248883..248977,249075..249156,249913..250066,251700..251767,252448..252557,253209..253332,253982..254107,254702..254853,255411..255498,256055..256392))
location: region:243530-256392:-1
so has part: feature:256055-256392:-1:exon
so has part: feature:255411-255498:-1:exon
so has part: feature:254702-254853:-1:exon
so has part: feature:253982-254107:-1:exon
so has part: feature:253209-253332:-1:exon
so has part: feature:252448-252557:-1:exon
so has part: feature:251700-251767:-1:exon
so has part: feature:249913-250066:-1:exon
so has part: feature:249075-249156:-1:exon
so has part: feature:248883-248977:-1:exon
so has part: feature:247977-248080:-1:exon
so has part: feature:246823-246959:-1:exon
so has part: feature:243530-245969:-1:exon

position:256392:-1
position: 256392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:256055-256392:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:255411-255498:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:254702-254853:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:253982-254107:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:253209-253332:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:252448-252557:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:251700-251767:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:249913-250066:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:249075-249156:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:248883-248977:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:247977-248080:-1:exon

position:247977:-1
position: 247977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:246823-246959:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:243530-245969:-1:exon

MIER2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: MIER2
product: MIER family member 2, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_040537801.1
SIO_010081: MIER2
subclass of: SO_0000673
so part of: MIER2
location: complement(join(243530..245969,246823..246959,247953..248080,248883..248977,249075..249156,249913..250066,251700..251767,252448..252557,253209..253332,253982..254102,254702..254839))
location: region:243530-254839:-1
so has part: feature:254702-254839:-1:exon
so has part: feature:253982-254102:-1:exon
so has part: feature:253209-253332:-1:exon
so has part: feature:252448-252557:-1:exon
so has part: feature:251700-251767:-1:exon
so has part: feature:249913-250066:-1:exon
so has part: feature:249075-249156:-1:exon
so has part: feature:248883-248977:-1:exon
so has part: feature:247953-248080:-1:exon
so has part: feature:246823-246959:-1:exon
so has part: feature:243530-245969:-1:exon

position:254839:-1
position: 254839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254702-254839:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:253982-254102:-1:exon

position:254102:-1
position: 254102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:253209-253332:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:252448-252557:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:251700-251767:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:249913-250066:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:249075-249156:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:248883-248977:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:247953-248080:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:246823-246959:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:243530-245969:-1:exon

MIER2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: MIER2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mesoderm induction early response protein 2 isoform X3
translation: MAEASVGRQSPRVVPYPAHSLCPGESGLQSAAVVSMGSADHRLNLAEILSQNYGVREEREEEEDTQEKQKSLEELEKSFSASQNSEMPFEELLALYGYEASDPISEQGSESNDITPNLPDMTLDKEQIAKDLLSGEEEEETQSSADDLTPSVTSHDASDLFPNQPGSNNFLADEDKEPCSSPCASSMAEDSEEDSIPSNECKKEIMVGPQYQATVPILHLNRHSEKAYENEDQLLWDPNILPEREVEEFLYCAVKRRWDELSSSSLPEGEMVKDNEQALYELVKCNFNAEEALRRLRFNVKVIRDELCAWSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYMWKKSERYDYFTQQTRLGRKKYVLHPGATDYTDNDLDGGEVENASRSRSSPPIPSATSCLDSHFGQDQLVIESTEPLSVESTACSLGSMSESGQGYECSTPSETNCSFDPAEETSSGTLSASCTRHTVTPSDTGLYALPPAGPGLAEKQETLQSSGETITMDFTLPADINEGLPLIAGPVDLDRDPEAVVAPAQVSLSVTDFGLIGIGDVNSFLTAHQACPAPVARSEPLSQ
SIO_010081: MIER2
subclass of: SO_0000673
so part of: MIER2
location: complement(join(245494..245969,246823..246959,247953..248080,248883..248977,249075..249156,249913..250066,251700..251767,252448..252557,253209..253332,253982..254107,254702..254853,255411..255498,259247..259255))
location: region:245494-259255:-1
so has part: feature:259247-259255:-1:exon
so has part: feature:255411-255498:-1:exon
so has part: feature:254702-254853:-1:exon
so has part: feature:253982-254107:-1:exon
so has part: feature:253209-253332:-1:exon
so has part: feature:252448-252557:-1:exon
so has part: feature:251700-251767:-1:exon
so has part: feature:249913-250066:-1:exon
so has part: feature:249075-249156:-1:exon
so has part: feature:248883-248977:-1:exon
so has part: feature:247953-248080:-1:exon
so has part: feature:246823-246959:-1:exon
so has part: feature:245494-245969:-1:exon

XP_040393734.1
type: Protein
SIO_000068: ncbiprotein

position:245494:-1
position: 245494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:259255:-1
position: 259255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:259247-259255:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:255411-255498:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:254702-254853:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:253982-254107:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:253209-253332:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:252448-252557:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:251700-251767:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:249913-250066:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:249075-249156:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:248883-248977:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:247953-248080:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:246823-246959:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:245494-245969:-1:exon

MIER2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: MIER2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mesoderm induction early response protein 2 isoform X2
translation: MNSISRCISPRSCRCSGLLSRPRPMLLPKLLIRAPNARKQASVGRQSPRVVPYPAHSLCPGESGLQSAAVVSMGSADHRLNLAEILSQNYGVREEREEEEDTQEKQKSLEELEKSFSASQNSEMPFEELLALYGYEASDPISEQGSESNDITPNLPDMTLDKEQIAKDLLSGEEEEETQSSADDLTPSVTSHDASDLFPNQPGSNNFLADEDKEPCSSPCASSMAEDSEEDSIPSNECKKEIMVGPQYQATVPILHLNRHSEKAYENEDQLLWDPNILPEREVEEFLYCAVKRRWDELSSSSLPEGEMVKDNEQALYELVKCNFNAEEALRRLRFNVKVIRDELCAWSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYMWKKSERYDYFTQQTRLGRKKDYTDNDLDGGEVENASRSRSSPPIPSATSCLDSHFGQDQLVIESTEPLSVESTACSLGSMSESGQGYECSTPSETNCSFDPAEETSSGTLSASCTRHTVTPSDTGLYALPPAGPGLAEKQETLQSSGETITMDFTLPADINEGLPLIAGPVDLDRDPEAVVAPAQVSLSVTDFGLIGIGDVNSFLTAHQACPAPVARSEPLSQ
SIO_010081: MIER2
subclass of: SO_0000673
so part of: MIER2
location: complement(join(245494..245969,246823..246959,247977..248080,248883..248977,249075..249156,249913..250066,251700..251767,252448..252557,253209..253332,253982..254107,254702..254853,255411..255498,256055..256174))
location: region:245494-256174:-1
so has part: feature:256055-256174:-1:exon
so has part: feature:255411-255498:-1:exon
so has part: feature:254702-254853:-1:exon
so has part: feature:253982-254107:-1:exon
so has part: feature:253209-253332:-1:exon
so has part: feature:252448-252557:-1:exon
so has part: feature:251700-251767:-1:exon
so has part: feature:249913-250066:-1:exon
so has part: feature:249075-249156:-1:exon
so has part: feature:248883-248977:-1:exon
so has part: feature:247977-248080:-1:exon
so has part: feature:246823-246959:-1:exon
so has part: feature:245494-245969:-1:exon

XP_040393732.1
type: Protein
SIO_000068: ncbiprotein

position:256174:-1
position: 256174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:256055-256174:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:255411-255498:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:254702-254853:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:253982-254107:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:253209-253332:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:252448-252557:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:251700-251767:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:249913-250066:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:249075-249156:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:248883-248977:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:247977-248080:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:246823-246959:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:245494-245969:-1:exon

MIER2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: MIER2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mesoderm induction early response protein 2 isoform X1
translation: MNSISRCISPRSCRCSGLLSRPRPMLLPKLLIRAPNARKQASVGRQSPRVVPYPAHSLCPGESGLQSAAVVSMGSADHRLNLAEILSQNYGVREEREEEEDTQEKQKSLEELEKSFSASQNSEMPFEELLALYGYEASDPISEQGSESNDITPNLPDMTLDKEQIAKDLLSGEEEEETQSSADDLTPSVTSHDASDLFPNQPGSNNFLADEDKEPCSSPCASSMAEDSEEDSIPSNECKKEIMVGPQYQATVPILHLNRHSEKAYENEDQLLWDPNILPEREVEEFLYCAVKRRWDELSSSSLPEGEMVKDNEQALYELVKCNFNAEEALRRLRFNVKVIRDELCAWSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYMWKKSERYDYFTQQTRLGRKKYVLHPGATDYTDNDLDGGEVENASRSRSSPPIPSATSCLDSHFGQDQLVIESTEPLSVESTACSLGSMSESGQGYECSTPSETNCSFDPAEETSSGTLSASCTRHTVTPSDTGLYALPPAGPGLAEKQETLQSSGETITMDFTLPADINEGLPLIAGPVDLDRDPEAVVAPAQVSLSVTDFGLIGIGDVNSFLTAHQACPAPVARSEPLSQ
SIO_010081: MIER2
subclass of: SO_0000673
so part of: MIER2
location: complement(join(245494..245969,246823..246959,247953..248080,248883..248977,249075..249156,249913..250066,251700..251767,252448..252557,253209..253332,253982..254107,254702..254853,255411..255498,256055..256174))
location: region:245494-256174:-1
so has part: feature:256055-256174:-1:exon
so has part: feature:255411-255498:-1:exon
so has part: feature:254702-254853:-1:exon
so has part: feature:253982-254107:-1:exon
so has part: feature:253209-253332:-1:exon
so has part: feature:252448-252557:-1:exon
so has part: feature:251700-251767:-1:exon
so has part: feature:249913-250066:-1:exon
so has part: feature:249075-249156:-1:exon
so has part: feature:248883-248977:-1:exon
so has part: feature:247953-248080:-1:exon
so has part: feature:246823-246959:-1:exon
so has part: feature:245494-245969:-1:exon

XP_040393730.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:256055-256174:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:255411-255498:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:254702-254853:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:253982-254107:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:253209-253332:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:252448-252557:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:251700-251767:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:249913-250066:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:249075-249156:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:248883-248977:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:247953-248080:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:246823-246959:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:245494-245969:-1:exon

MIER2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: MIER2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mesoderm induction early response protein 2 isoform X1
translation: MNSISRCISPRSCRCSGLLSRPRPMLLPKLLIRAPNARKQASVGRQSPRVVPYPAHSLCPGESGLQSAAVVSMGSADHRLNLAEILSQNYGVREEREEEEDTQEKQKSLEELEKSFSASQNSEMPFEELLALYGYEASDPISEQGSESNDITPNLPDMTLDKEQIAKDLLSGEEEEETQSSADDLTPSVTSHDASDLFPNQPGSNNFLADEDKEPCSSPCASSMAEDSEEDSIPSNECKKEIMVGPQYQATVPILHLNRHSEKAYENEDQLLWDPNILPEREVEEFLYCAVKRRWDELSSSSLPEGEMVKDNEQALYELVKCNFNAEEALRRLRFNVKVIRDELCAWSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYMWKKSERYDYFTQQTRLGRKKYVLHPGATDYTDNDLDGGEVENASRSRSSPPIPSATSCLDSHFGQDQLVIESTEPLSVESTACSLGSMSESGQGYECSTPSETNCSFDPAEETSSGTLSASCTRHTVTPSDTGLYALPPAGPGLAEKQETLQSSGETITMDFTLPADINEGLPLIAGPVDLDRDPEAVVAPAQVSLSVTDFGLIGIGDVNSFLTAHQACPAPVARSEPLSQ
SIO_010081: MIER2
subclass of: SO_0000673
so part of: MIER2
location: complement(join(245494..245969,246823..246959,247953..248080,248883..248977,249075..249156,249913..250066,251700..251767,252448..252557,253209..253332,253982..254107,254702..254853,255411..255498,256055..256174))
location: region:245494-256174:-1
so has part: feature:256055-256174:-1:exon
so has part: feature:255411-255498:-1:exon
so has part: feature:254702-254853:-1:exon
so has part: feature:253982-254107:-1:exon
so has part: feature:253209-253332:-1:exon
so has part: feature:252448-252557:-1:exon
so has part: feature:251700-251767:-1:exon
so has part: feature:249913-250066:-1:exon
so has part: feature:249075-249156:-1:exon
so has part: feature:248883-248977:-1:exon
so has part: feature:247953-248080:-1:exon
so has part: feature:246823-246959:-1:exon
so has part: feature:245494-245969:-1:exon

XP_040393731.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:256055-256174:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:255411-255498:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:254702-254853:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:253982-254107:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:253209-253332:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:252448-252557:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:251700-251767:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:249913-250066:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:249075-249156:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:248883-248977:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:247953-248080:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:246823-246959:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:245494-245969:-1:exon

MIER2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: MIER2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mesoderm induction early response protein 2 isoform X4
translation: MPFEELLALYGYEASDPISEQGSESNDITPNLPDMTLDKEQIAKDLLSGEEEEETQSSADDLTPSVTSHDASDLFPNQPGSNNFLADEDKEPCSSPCASSMAEDSEEDSIPSNECKKEIMVGPQYQATVPILHLNRHSEKAYENEDQLLWDPNILPEREVEEFLYCAVKRRWDELSSSSLPEGEMVKDNEQALYELVKCNFNAEEALRRLRFNVKVIRDELCAWSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYMWKKSERYDYFTQQTRLGRKKYVLHPGATDYTDNDLDGGEVENASRSRSSPPIPSATSCLDSHFGQDQLVIESTEPLSVESTACSLGSMSESGQGYECSTPSETNCSFDPAEETSSGTLSASCTRHTVTPSDTGLYALPPAGPGLAEKQETLQSSGETITMDFTLPADINEGLPLIAGPVDLDRDPEAVVAPAQVSLSVTDFGLIGIGDVNSFLTAHQACPAPVARSEPLSQ
SIO_010081: MIER2
subclass of: SO_0000673
so part of: MIER2
location: complement(join(245494..245969,246823..246959,247953..248080,248883..248977,249075..249156,249913..250066,251700..251767,252448..252557,253209..253332,253982..254098))
location: region:245494-254098:-1
so has part: feature:253982-254098:-1:exon
so has part: feature:253209-253332:-1:exon
so has part: feature:252448-252557:-1:exon
so has part: feature:251700-251767:-1:exon
so has part: feature:249913-250066:-1:exon
so has part: feature:249075-249156:-1:exon
so has part: feature:248883-248977:-1:exon
so has part: feature:247953-248080:-1:exon
so has part: feature:246823-246959:-1:exon
so has part: feature:245494-245969:-1:exon

XP_040393735.1
type: Protein
SIO_000068: ncbiprotein

position:254098:-1
position: 254098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:253982-254098:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:253209-253332:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:252448-252557:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:251700-251767:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:249913-250066:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:249075-249156:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:248883-248977:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:247953-248080:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:246823-246959:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:245494-245969:-1:exon

C2CD4C
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: C2CD4C
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(272635..276610)
location: region:272635-276610:-1
so has part: feature:272635-276610:-1:exon
subclass of: SO_0000010

121060245
type: Gene
SIO_000068: ncbigene

position:272635:-1
position: 272635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:276610:-1
position: 276610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:272635-276610:-1:exon

C2CD4C
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: C2CD4C
product: C2 calcium dependent domain containing 4C, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_040537869.1
SIO_010081: C2CD4C
subclass of: SO_0000673
so part of: C2CD4C
location: complement(join(272635..276216,276606..276610))
location: region:272635-276610:-1
so has part: feature:276606-276610:-1:exon
so has part: feature:272635-276216:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:276606-276610:-1:exon

position:276606:-1
position: 276606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:272635-276216:-1:exon

position:276216:-1
position: 276216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

C2CD4C
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: C2CD4C
product: C2 calcium dependent domain containing 4C, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_040537868.1
SIO_010081: C2CD4C
subclass of: SO_0000673
so part of: C2CD4C
location: complement(join(272635..276216,276592..276610))
location: region:272635-276610:-1
so has part: feature:276592-276610:-1:exon
so has part: feature:272635-276216:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:276592-276610:-1:exon

position:276592:-1
position: 276592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:272635-276216:-1:exon

C2CD4C
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: C2CD4C
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: C2 calcium-dependent domain-containing protein 4C
translation: MWLLERLRGVAENGGSRGAGPEESPRGSRYSNVLTPDKIPDFFIPPKLSAAPAEAEGSEPPAPPALGPSASEQDLAGRKPPRSPRPPSRPRPKATGRHIIQIESAEDWTAEGGFGTNADPQAQTAMSLPYVPKAQTSYGFATLVESPHTRRKESLFHSEHSSLCPSPATSPSAQRRAKLNGESGSRAPADLGAALMHPGRYFSGGESDTCSSAESSPFGSPLLSRSVSLLKIFSQESQSKVIKLKHSVARNSSLSTDDSSADTSPSAQRRARSAPAGGQLPAAPDLPQGRHREHSLRLSRGGSLRLAADYDPSNARLRVRLVSAEDLYDALVDVRSINCCVSLCLNPGKLQKQRSTIVKNSRNPSFNEDFFFDGLGPGHVRKLSLKLKVVNKGSSLKRDTLLGEKELPLTTLLAGL
SIO_010081: C2CD4C
subclass of: SO_0000673
so part of: C2CD4C
location: complement(274947..276197)
location: region:274947-276197:-1
so has part: feature:274947-276197:-1:exon

XP_040393802.1
type: Protein
SIO_000068: ncbiprotein

position:274947:-1
position: 274947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:276197:-1
position: 276197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:274947-276197:-1:exon

C2CD4C
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: C2CD4C
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: C2 calcium-dependent domain-containing protein 4C
translation: MWLLERLRGVAENGGSRGAGPEESPRGSRYSNVLTPDKIPDFFIPPKLSAAPAEAEGSEPPAPPALGPSASEQDLAGRKPPRSPRPPSRPRPKATGRHIIQIESAEDWTAEGGFGTNADPQAQTAMSLPYVPKAQTSYGFATLVESPHTRRKESLFHSEHSSLCPSPATSPSAQRRAKLNGESGSRAPADLGAALMHPGRYFSGGESDTCSSAESSPFGSPLLSRSVSLLKIFSQESQSKVIKLKHSVARNSSLSTDDSSADTSPSAQRRARSAPAGGQLPAAPDLPQGRHREHSLRLSRGGSLRLAADYDPSNARLRVRLVSAEDLYDALVDVRSINCCVSLCLNPGKLQKQRSTIVKNSRNPSFNEDFFFDGLGPGHVRKLSLKLKVVNKGSSLKRDTLLGEKELPLTTLLAGL
SIO_010081: C2CD4C
subclass of: SO_0000673
so part of: C2CD4C
location: complement(274947..276197)
location: region:274947-276197:-1
so has part: feature:274947-276197:-1:exon

XP_040393803.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:274947-276197:-1:exon

SHC2
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: SHC2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(280561..285940)
location: region:280561-285940:-1
so has part: feature:280561-285940:-1:exon
subclass of: SO_0000010

121060240
type: Gene
SIO_000068: ncbigene

position:280561:-1
position: 280561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:285940:-1
position: 285940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:280561-285940:-1:exon

SHC2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: SHC2
product: SHC adaptor protein 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_040537859.1
SIO_010081: SHC2
subclass of: SO_0000673
so part of: SHC2
location: complement(join(280561..280943,281593..281730,281814..282115,282211..282372,282497..282563,282647..282827,282949..283075,283223..283274,283455..283508,283635..283754,283942..284002,284320..284390,285352..285940))
location: region:280561-285940:-1
so has part: feature:285352-285940:-1:exon
so has part: feature:284320-284390:-1:exon
so has part: feature:283942-284002:-1:exon
so has part: feature:283635-283754:-1:exon
so has part: feature:283455-283508:-1:exon
so has part: feature:283223-283274:-1:exon
so has part: feature:282949-283075:-1:exon
so has part: feature:282647-282827:-1:exon
so has part: feature:282497-282563:-1:exon
so has part: feature:282211-282372:-1:exon
so has part: feature:281814-282115:-1:exon
so has part: feature:281593-281730:-1:exon
so has part: feature:280561-280943:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:285352-285940:-1:exon

position:285352:-1
position: 285352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:284320-284390:-1:exon

position:284320:-1
position: 284320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:284390:-1
position: 284390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:283942-284002:-1:exon

position:283942:-1
position: 283942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:284002:-1
position: 284002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:283635-283754:-1:exon

position:283635:-1
position: 283635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:283754:-1
position: 283754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:283455-283508:-1:exon

position:283455:-1
position: 283455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:283508:-1
position: 283508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:283223-283274:-1:exon

position:283223:-1
position: 283223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:283274:-1
position: 283274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:282949-283075:-1:exon

position:282949:-1
position: 282949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:283075:-1
position: 283075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:282647-282827:-1:exon

position:282647:-1
position: 282647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:282827:-1
position: 282827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:282497-282563:-1:exon

position:282497:-1
position: 282497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:282563:-1
position: 282563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:282211-282372:-1:exon

position:282211:-1
position: 282211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:282372:-1
position: 282372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:281814-282115:-1:exon

position:281814:-1
position: 281814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:282115:-1
position: 282115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:281593-281730:-1:exon

position:281593:-1
position: 281593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:281730:-1
position: 281730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:280561-280943:-1:exon

position:280943:-1
position: 280943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SHC2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: SHC2
product: SHC adaptor protein 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_040537858.1
SIO_010081: SHC2
subclass of: SO_0000673
so part of: SHC2
location: complement(join(280561..281730,281814..282115,282211..282372,282497..282563,282647..282827,282949..283075,283223..283274,283455..283508,283635..283754,283942..284002,284320..284390,285352..285939))
location: region:280561-285939:-1
so has part: feature:285352-285939:-1:exon
so has part: feature:284320-284390:-1:exon
so has part: feature:283942-284002:-1:exon
so has part: feature:283635-283754:-1:exon
so has part: feature:283455-283508:-1:exon
so has part: feature:283223-283274:-1:exon
so has part: feature:282949-283075:-1:exon
so has part: feature:282647-282827:-1:exon
so has part: feature:282497-282563:-1:exon
so has part: feature:282211-282372:-1:exon
so has part: feature:281814-282115:-1:exon
so has part: feature:280561-281730:-1:exon

position:285939:-1
position: 285939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:285352-285939:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:284320-284390:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:283942-284002:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:283635-283754:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:283455-283508:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:283223-283274:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:282949-283075:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:282647-282827:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:282497-282563:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:282211-282372:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:281814-282115:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:280561-281730:-1:exon

SHC2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: SHC2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SHC-transforming protein 2
translation: MLPEPKYDRFRDEPLRAAPMPAPVPVPVPAPAPGLAQPCPAAGEEPEAGTTFCTLLPRMPQWKFPGPGGFLSRSPSGSSKELSSPARPGGAAEPGGAPSSLAAVLGACEPGCSAPCSLPGLSRLRGGAGAARKAARAEGARPGGEEWNRKGSFISKPAQGWLHPDERVLGPGVSYIVRYMGCIEVLRSMRSLDFNTRTQVTREAINRLYEAVPGVKGIWKKKAPNKALFSILGKSNLRFAGMSIAVNISVDGLNLMIPTTRQIIANHHMQSISFASGGDTDTTDYVAYVAKDPINQRACHILECCDGLAQSVINTVGQAFELRFKQYLHSPPKVVVPPDRVLGMEESAWGEDDEAGEHDYYNSIPGKEPPPGGLIDSRLRHSALLGHVRVQPPSSSPASQGSLAPRREQSSQPGLPWDLESQGQPCDGYLQADGHPLGPRDYEEHMYVNTQSLDTREPDTACGALEESPKKDLFDMRPFEDALKLHECIAGSGSSPPIEDQWPSPPTRKAPIAPTEEQLRREPWYHGKMSRRDAEKLLQMDGDFLVRDSITNPGQYVLTGMHCGQPKHLLLVDPEGVVRTKDVLFESISHLISHHRQNEQPIVAAESELHLRQVVRRKQ
SIO_010081: SHC2
subclass of: SO_0000673
so part of: SHC2
location: complement(join(281602..281730,281814..282115,282211..282372,282497..282563,282647..282827,282949..283075,283223..283274,283455..283508,283635..283754,283942..284002,284320..284390,285352..285885))
location: region:281602-285885:-1
so has part: feature:285352-285885:-1:exon
so has part: feature:284320-284390:-1:exon
so has part: feature:283942-284002:-1:exon
so has part: feature:283635-283754:-1:exon
so has part: feature:283455-283508:-1:exon
so has part: feature:283223-283274:-1:exon
so has part: feature:282949-283075:-1:exon
so has part: feature:282647-282827:-1:exon
so has part: feature:282497-282563:-1:exon
so has part: feature:282211-282372:-1:exon
so has part: feature:281814-282115:-1:exon
so has part: feature:281602-281730:-1:exon

XP_040393792.1
type: Protein
SIO_000068: ncbiprotein

position:281602:-1
position: 281602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:285885:-1
position: 285885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:285352-285885:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:284320-284390:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:283942-284002:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:283635-283754:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:283455-283508:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:283223-283274:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:282949-283075:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:282647-282827:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:282497-282563:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:282211-282372:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:281814-282115:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:281602-281730:-1:exon

SHC2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: SHC2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SHC-transforming protein 2
translation: MLPEPKYDRFRDEPLRAAPMPAPVPVPVPAPAPGLAQPCPAAGEEPEAGTTFCTLLPRMPQWKFPGPGGFLSRSPSGSSKELSSPARPGGAAEPGGAPSSLAAVLGACEPGCSAPCSLPGLSRLRGGAGAARKAARAEGARPGGEEWNRKGSFISKPAQGWLHPDERVLGPGVSYIVRYMGCIEVLRSMRSLDFNTRTQVTREAINRLYEAVPGVKGIWKKKAPNKALFSILGKSNLRFAGMSIAVNISVDGLNLMIPTTRQIIANHHMQSISFASGGDTDTTDYVAYVAKDPINQRACHILECCDGLAQSVINTVGQAFELRFKQYLHSPPKVVVPPDRVLGMEESAWGEDDEAGEHDYYNSIPGKEPPPGGLIDSRLRHSALLGHVRVQPPSSSPASQGSLAPRREQSSQPGLPWDLESQGQPCDGYLQADGHPLGPRDYEEHMYVNTQSLDTREPDTACGALEESPKKDLFDMRPFEDALKLHECIAGSGSSPPIEDQWPSPPTRKAPIAPTEEQLRREPWYHGKMSRRDAEKLLQMDGDFLVRDSITNPGQYVLTGMHCGQPKHLLLVDPEGVVRTKDVLFESISHLISHHRQNEQPIVAAESELHLRQVVRRKQ
SIO_010081: SHC2
subclass of: SO_0000673
so part of: SHC2
location: complement(join(281602..281730,281814..282115,282211..282372,282497..282563,282647..282827,282949..283075,283223..283274,283455..283508,283635..283754,283942..284002,284320..284390,285352..285885))
location: region:281602-285885:-1
so has part: feature:285352-285885:-1:exon
so has part: feature:284320-284390:-1:exon
so has part: feature:283942-284002:-1:exon
so has part: feature:283635-283754:-1:exon
so has part: feature:283455-283508:-1:exon
so has part: feature:283223-283274:-1:exon
so has part: feature:282949-283075:-1:exon
so has part: feature:282647-282827:-1:exon
so has part: feature:282497-282563:-1:exon
so has part: feature:282211-282372:-1:exon
so has part: feature:281814-282115:-1:exon
so has part: feature:281602-281730:-1:exon

XP_040393793.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:285352-285885:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:284320-284390:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:283942-284002:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:283635-283754:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:283455-283508:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:283223-283274:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:282949-283075:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:282647-282827:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:282497-282563:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:282211-282372:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:281814-282115:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:281602-281730:-1:exon

LOC121060128
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: LOC121060128
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 289858..299462
location: region:289858-299462:1
so has part: feature:289858-299462:1:exon
subclass of: SO_0000010

121060128
type: Gene
SIO_000068: ncbigene

position:289858:1
position: 289858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:299462:1
position: 299462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:289858-299462:1:exon

LOC121060128
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060128
product: hippocampus abundant transcript 1 protein-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537612.1
SIO_010081: LOC121060128
subclass of: SO_0000673
so part of: LOC121060128
location: join(289858..290087,291936..292031,293269..293331,294476..294603,295072..295186,295755..295973,296713..296826,297149..297220,297635..297747,297924..298021,298593..298759,298848..299462)
location: region:289858-299462:1
so has part: feature:289858-290087:1:exon
so has part: feature:291936-292031:1:exon
so has part: feature:293269-293331:1:exon
so has part: feature:294476-294603:1:exon
so has part: feature:295072-295186:1:exon
so has part: feature:295755-295973:1:exon
so has part: feature:296713-296826:1:exon
so has part: feature:297149-297220:1:exon
so has part: feature:297635-297747:1:exon
so has part: feature:297924-298021:1:exon
so has part: feature:298593-298759:1:exon
so has part: feature:298848-299462:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:289858-290087:1:exon

position:290087:1
position: 290087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:291936-292031:1:exon

position:291936:1
position: 291936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:292031:1
position: 292031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:293269-293331:1:exon

position:293269:1
position: 293269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:293331:1
position: 293331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:294476-294603:1:exon

position:294476:1
position: 294476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:294603:1
position: 294603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:295072-295186:1:exon

position:295072:1
position: 295072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:295186:1
position: 295186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:295755-295973:1:exon

position:295755:1
position: 295755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:295973:1
position: 295973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:296713-296826:1:exon

position:296713:1
position: 296713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:296826:1
position: 296826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:297149-297220:1:exon

position:297149:1
position: 297149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:297220:1
position: 297220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:297635-297747:1:exon

position:297635:1
position: 297635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:297747:1
position: 297747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:297924-298021:1:exon

position:297924:1
position: 297924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:298021:1
position: 298021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:298593-298759:1:exon

position:298593:1
position: 298593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:298759:1
position: 298759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:298848-299462:1:exon

position:298848:1
position: 298848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121060128
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060128
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: hippocampus abundant transcript 1 protein-like
translation: MTGEKKKKKRLNRSVLLAKKIVIRDGAGRQGIGEPSVYHAVVVIFLEFFAWGLLTTPMLTVLHQTFPQHTFLMNGLIHGVKGLLSFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKISPWWYFAVISMSGVFAVTFSVIFAYVADITQEHERSTAYGLVSATFAASLVTSPAIGAYLSQAYGDTLVVVLASGVALLDIGFILLAVPESLPEEMRPVSWGAPISWEQADPFASLRKVGQDSTVLLICITVFLSYLPEAGQYSSFFLYLRQVIGFSSETVAAFIGVVGILSILAQTVVLGILMRSIGNKNTILLGLGFQILQLAWYGFGSQPWMMWAAGAVAAMSSITFPAISAMVSRNADPDQQGVVQGMITGIRGLCNGLGPALYGFVFYLFHVELNEMAEVETLGKASKPNMANPTDESSIIPGPPFLFGACSVLLSLLVALFIPEHNLALRSGSHKKHSNGAQTHAHSPQAGGSDGKEPLLEDSSV
SIO_010081: LOC121060128
subclass of: SO_0000673
so part of: LOC121060128
location: join(290004..290087,291936..292031,293269..293331,294476..294603,295072..295186,295755..295973,296713..296826,297149..297220,297635..297747,297924..298021,298593..298759,298848..299057)
location: region:290004-299057:1
so has part: feature:290004-290087:1:exon
so has part: feature:291936-292031:1:exon
so has part: feature:293269-293331:1:exon
so has part: feature:294476-294603:1:exon
so has part: feature:295072-295186:1:exon
so has part: feature:295755-295973:1:exon
so has part: feature:296713-296826:1:exon
so has part: feature:297149-297220:1:exon
so has part: feature:297635-297747:1:exon
so has part: feature:297924-298021:1:exon
so has part: feature:298593-298759:1:exon
so has part: feature:298848-299057:1:exon

XP_040393546.1
type: Protein
SIO_000068: ncbiprotein

position:290004:1
position: 290004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:299057:1
position: 299057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:290004-290087:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:291936-292031:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:293269-293331:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:294476-294603:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:295072-295186:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:295755-295973:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:296713-296826:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:297149-297220:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:297635-297747:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:297924-298021:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:298593-298759:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:298848-299057:1:exon

MADCAM1
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: MADCAM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 306245..309544
location: region:306245-309544:1
so has part: feature:306245-309544:1:exon
subclass of: SO_0000010

121060233
type: Gene
SIO_000068: ncbigene

position:306245:1
position: 306245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:309544:1
position: 309544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:306245-309544:1:exon

MADCAM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: MADCAM1
product: mucosal vascular addressin cell adhesion molecule 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_040537846.1
SIO_010081: MADCAM1
subclass of: SO_0000673
so part of: MADCAM1
location: join(306245..306396,306881..307147,307266..307580,307894..308559,308717..309544)
location: region:306245-309544:1
so has part: feature:306245-306396:1:exon
so has part: feature:306881-307147:1:exon
so has part: feature:307266-307580:1:exon
so has part: feature:307894-308559:1:exon
so has part: feature:308717-309544:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:306245-306396:1:exon

position:306396:1
position: 306396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:306881-307147:1:exon

position:306881:1
position: 306881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:307147:1
position: 307147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:307266-307580:1:exon

position:307266:1
position: 307266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:307580:1
position: 307580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:307894-308559:1:exon

position:307894:1
position: 307894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:308559:1
position: 308559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:308717-309544:1:exon

position:308717:1
position: 308717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MADCAM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: MADCAM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mucosal addressin cell adhesion molecule 1
translation: MEVAPLLLLSALWGCSGRPVDKMVVEPREPLVRYGDAVQLNCSLPCTGGTVQWKGLDTNLGSIDSFPTHSVLHINHAEVSTAGTKICQGICGEEHYQKSVDLRVYSLPDMLQLEAHPPALVPGQPNTLRCSARRVYPPAGLVVAWYRGDQELQRNNPDTTETDEELFDIEATLSVAGEDVAEGALFRCELTLSVGTEIFTCEASMTVSTGAVAEQPSAVATSTESPRTTTTTTGSLSTTRSAATMALSPEPGVPMHDPTSALTAASQEPKTTSEQAAATELPPVERPTPQDPIAGSPSARPATATVPSSSSTSPTAGGLAEAEGTAAGGTLQGSHVAGTGTAPACSLRIWSLPPNGTRGRALRIECHAQCAQNATVRWLRTPVALSQYREEVAGSGSTLQLDHAEPRHQGHYQCILQGHRSQAVSLQLVVSDDMFSADPAIAMGTTMSLLGLIVTGVISHRLWKRFKSQYELS
SIO_010081: MADCAM1
subclass of: SO_0000673
so part of: MADCAM1
location: join(306348..306396,306881..307147,307266..307580,307894..308559,308717..308841)
location: region:306348-308841:1
so has part: feature:306348-306396:1:exon
so has part: feature:306881-307147:1:exon
so has part: feature:307266-307580:1:exon
so has part: feature:307894-308559:1:exon
so has part: feature:308717-308841:1:exon

XP_040393780.1
type: Protein
SIO_000068: ncbiprotein

position:306348:1
position: 306348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:308841:1
position: 308841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:306348-306396:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:306881-307147:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:307266-307580:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:307894-308559:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:308717-308841:1:exon

TPGS1
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: TPGS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 310045..312083
location: region:310045-312083:1
so has part: feature:310045-312083:1:exon
subclass of: SO_0000010

121060234
type: Gene
SIO_000068: ncbigene

position:310045:1
position: 310045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:312083:1
position: 312083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:310045-312083:1:exon

TPGS1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: TPGS1
product: tubulin polyglutamylase complex subunit 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537847.1
SIO_010081: TPGS1
subclass of: SO_0000673
so part of: TPGS1
location: join(310045..310391,310562..312083)
location: region:310045-312083:1
so has part: feature:310045-310391:1:exon
so has part: feature:310562-312083:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:310045-310391:1:exon

position:310391:1
position: 310391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:310562-312083:1:exon

position:310562:1
position: 310562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TPGS1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: TPGS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tubulin polyglutamylase complex subunit 1
translation: MAAYEKRRAAAAPAPAAGSGPAEPLGAAAGGGPEGEAEFLLRSGVTAMVREALLKVLEARPEEPVSFLADYFERLVLGGPGAAEAAAELPAPPQRLARALWYVRLAHHSHRTAFNNNISTAYEVLGASGRRRRPGVDGRLYSELLRRICQLGAAPQEVAAALLRRVQCRDHEAVPFDVFRYGVLTCFVLLEFVAKAHTLYDVLDGGTGAADKRVCQAVLRTLEEALGGSDFSVPVRYLEAGSKLGPDCLALAMDRALQERKLSASMSRDEFLKKATALFVAKVKPVD
SIO_010081: TPGS1
subclass of: SO_0000673
so part of: TPGS1
location: join(310060..310391,310562..311093)
location: region:310060-311093:1
so has part: feature:310060-310391:1:exon
so has part: feature:310562-311093:1:exon

XP_040393781.1
type: Protein
SIO_000068: ncbiprotein

position:310060:1
position: 310060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:311093:1
position: 311093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:310060-310391:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:310562-311093:1:exon

CDC34
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: CDC34
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 312513..318057
location: region:312513-318057:1
so has part: feature:312513-318057:1:exon
subclass of: SO_0000010

121060232
type: Gene
SIO_000068: ncbigene

position:312513:1
position: 312513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:318057:1
position: 318057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:312513-318057:1:exon

CDC34
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CDC34
product: cell division cycle 34, ubiqiutin conjugating enzyme
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 long SRA reads, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537845.1
SIO_010081: CDC34
subclass of: SO_0000673
so part of: CDC34
location: join(312513..312770,315726..315812,316409..316506,316594..316728,317210..318057)
location: region:312513-318057:1
so has part: feature:312513-312770:1:exon
so has part: feature:315726-315812:1:exon
so has part: feature:316409-316506:1:exon
so has part: feature:316594-316728:1:exon
so has part: feature:317210-318057:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:312513-312770:1:exon

position:312770:1
position: 312770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:315726-315812:1:exon

position:315726:1
position: 315726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:315812:1
position: 315812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:316409-316506:1:exon

position:316409:1
position: 316409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:316506:1
position: 316506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:316594-316728:1:exon

position:316594:1
position: 316594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:316728:1
position: 316728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:317210-318057:1:exon

position:317210:1
position: 317210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CDC34
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CDC34
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin-conjugating enzyme E2 R1
translation: MARPPVPSSQKALLLELKGLQEEPVEGFRVALVDEGDLYTWEVAIFGPPGTDYEGGYFKARLRFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVDAERDGVKVPTTLAEYCVKTKTPAPDEGSDLFYDDYYEDDEMEEEADSCYGDDDDSGNEES
SIO_010081: CDC34
subclass of: SO_0000673
so part of: CDC34
location: join(312594..312770,315726..315812,316409..316506,316594..316728,317210..317420)
location: region:312594-317420:1
so has part: feature:312594-312770:1:exon
so has part: feature:315726-315812:1:exon
so has part: feature:316409-316506:1:exon
so has part: feature:316594-316728:1:exon
so has part: feature:317210-317420:1:exon

XP_040393779.1
type: Protein
SIO_000068: ncbiprotein

position:312594:1
position: 312594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:317420:1
position: 317420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:312594-312770:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:315726-315812:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:316409-316506:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:316594-316728:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:317210-317420:1:exon

BSG
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: BSG
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 321033..334689
location: region:321033-334689:1
so has part: feature:321033-334689:1:exon
subclass of: SO_0000010

121060134
type: Gene
SIO_000068: ncbigene

position:321033:1
position: 321033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:334689:1
position: 334689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:321033-334689:1:exon

BSG
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: BSG
product: basigin (Ok blood group), transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3605 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537627.1
SIO_010081: BSG
subclass of: SO_0000673
so part of: BSG
location: join(321033..321176,327367..327523,329158..329246,329731..329858,330074..330350,332602..332626,332957..333025,333566..334689)
location: region:321033-334689:1
so has part: feature:321033-321176:1:exon
so has part: feature:327367-327523:1:exon
so has part: feature:329158-329246:1:exon
so has part: feature:329731-329858:1:exon
so has part: feature:330074-330350:1:exon
so has part: feature:332602-332626:1:exon
so has part: feature:332957-333025:1:exon
so has part: feature:333566-334689:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:321033-321176:1:exon

position:321176:1
position: 321176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:327367-327523:1:exon

position:327367:1
position: 327367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:327523:1
position: 327523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:329158-329246:1:exon

position:329158:1
position: 329158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:329246:1
position: 329246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:329731-329858:1:exon

position:329731:1
position: 329731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:329858:1
position: 329858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:330074-330350:1:exon

position:330074:1
position: 330074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:330350:1
position: 330350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:332602-332626:1:exon

position:332602:1
position: 332602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:332626:1
position: 332626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:332957-333025:1:exon

position:332957:1
position: 332957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:333025:1
position: 333025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:333566-334689:1:exon

position:333566:1
position: 333566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

BSG
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 8869
gene: BSG
product: basigin (Ok blood group), transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 long SRA reads, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XR_005814747.1
SIO_010081: BSG
so part of: BSG
location: join(321039..321176,327367..327523,329158..329246,329731..329858,330074..333025,333566..334689)
location: region:321039-334689:1
so has part: feature:321039-321176:1:exon
so has part: feature:327367-327523:1:exon
so has part: feature:329158-329246:1:exon
so has part: feature:329731-329858:1:exon
so has part: feature:330074-333025:1:exon
so has part: feature:333566-334689:1:exon

position:321039:1
position: 321039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:321039-321176:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:327367-327523:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:329158-329246:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:329731-329858:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:330074-333025:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:333566-334689:1:exon

BSG
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: BSG
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: basigin
translation: MAAGAEGLRGLLALLVLGVLAAGGEGTSPDIQTGFSDSTGKLILSCNLTDPYSAIEGHEWKHGDKILQTDMESSTFTSYIIEGKKEEHSGIYECIYKTSPEIKGEMNISVLPQVVAYKKSEHGNEGDTGVLTCKNPSFPPVSAWVWYRNDQESIIVNGSGRYIIKSSGNKTELRILKLNIEEDTGDYHCSAINSIGKGEATVNLRVRSRLAALWPFLGIVAEVLVLVTIIFIYEKRRKPDEVLDDDDGGSAPLKSNATNHKDKNVRQRNAN
SIO_010081: BSG
subclass of: SO_0000673
so part of: BSG
location: join(321095..321176,327367..327523,329158..329246,329731..329858,330074..330350,332602..332626,332957..333014)
location: region:321095-333014:1
so has part: feature:321095-321176:1:exon
so has part: feature:327367-327523:1:exon
so has part: feature:329158-329246:1:exon
so has part: feature:329731-329858:1:exon
so has part: feature:330074-330350:1:exon
so has part: feature:332602-332626:1:exon
so has part: feature:332957-333014:1:exon

XP_040393561.1
type: Protein
SIO_000068: ncbiprotein

position:321095:1
position: 321095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:333014:1
position: 333014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:321095-321176:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:327367-327523:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:329158-329246:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:329731-329858:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:330074-330350:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:332602-332626:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:332957-333014:1:exon

HCN2
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: HCN2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 335280..349609
location: region:335280-349609:1
so has part: feature:335280-349609:1:exon
subclass of: SO_0000010

121060307
type: Gene
SIO_000068: ncbigene

position:335280:1
position: 335280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:349609:1
position: 349609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:335280-349609:1:exon

HCN2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: HCN2
product: hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_040538004.1
SIO_010081: HCN2
subclass of: SO_0000673
so part of: HCN2
location: join(335280..335283,336259..336938,342292..342715,344694..344855,345958..346176,346448..346594,346877..347117,347303..347467,347771..349609)
location: region:335280-349609:1
so has part: feature:335280-335283:1:exon
so has part: feature:336259-336938:1:exon
so has part: feature:342292-342715:1:exon
so has part: feature:344694-344855:1:exon
so has part: feature:345958-346176:1:exon
so has part: feature:346448-346594:1:exon
so has part: feature:346877-347117:1:exon
so has part: feature:347303-347467:1:exon
so has part: feature:347771-349609:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:335280-335283:1:exon

position:335283:1
position: 335283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:336259-336938:1:exon

position:336259:1
position: 336259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:336938:1
position: 336938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:342292-342715:1:exon

position:342292:1
position: 342292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:342715:1
position: 342715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:344694-344855:1:exon

position:344694:1
position: 344694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:344855:1
position: 344855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:345958-346176:1:exon

position:345958:1
position: 345958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:346176:1
position: 346176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:346448-346594:1:exon

position:346448:1
position: 346448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:346594:1
position: 346594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:346877-347117:1:exon

position:346877:1
position: 346877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:347117:1
position: 347117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:347303-347467:1:exon

position:347303:1
position: 347303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:347467:1
position: 347467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:347771-349609:1:exon

position:347771:1
position: 347771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HCN2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: HCN2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2
translation: MAPGPAAPGDRDAGSGRCRRGGAGPRGRRGPRRRGELRSRPGPGARPRPAPGPPPARRRAPLGRRWPRRRQGRMRAGRGAAGGEAAAEEEAAAAAAAAAAEGAKRGGGAGGRPRGRGGKGSPNGECRRGEPPRSPGAEPPREPKVSFSCGGGGASPGGAKAAEEGDDAGEEARGSQASFMQRQFGAMLQPGVNKFSLRMFGSQKAVEREQERVKSAGAWIIHPYSDFRFYWDFTMLLFMVGNLIIIPVGITFFKEETTAPWIVFNVVSDTFFLMDLVLNFRTGIVIEDNTEIILDPERIKKKYLKTWFVVDFVSSIPVDYVFLIVEKGIDSEVYKTARALRIVRFTKILSLLRLLRLSRLIRYIHQWEEIFHMTYDLASAVMRIINLIGMMLLLCHWDGCLQFLVPMLQDFPQNCWVSINGMVNDSWSELYSFALFKSMSHMLCIGYGKQAPESMTDIWLTMLSMIVGATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNEPLREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSILTKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDRIGKKNSILLHKVQHDLNSGVFNNQENEIIQEIVKYDREMVQQAELQQHTAMYSPVQPQVTSAIATLQQAVAMSFCPQMASPLVGSMALGSPRMMRRLQYAQAVPSPFAVSPVLLQQSPPQQPQPPTPHANPSPSQDQAPPTALPASTSALAAASPPSQSPLASRTFAYGGAKGQLGSQLSLSQQQAPGSPPRLAVHKSTQALHTGSLSQDSRPLSASQPSLPHGLAAGSTQSPPASARESCASIGGGPAAASPSSAPPAGLRGPASSRGALSHPAPAGPPALQQDSGAARKDSVGSTPDTDPAKSRLSSNL
SIO_010081: HCN2
subclass of: SO_0000673
so part of: HCN2
location: join(335280..335283,336259..336938,342292..342715,344694..344855,345958..346176,346448..346594,346877..347117,347303..347467,347771..348702)
location: region:335280-348702:1
so has part: feature:335280-335283:1:exon
so has part: feature:336259-336938:1:exon
so has part: feature:342292-342715:1:exon
so has part: feature:344694-344855:1:exon
so has part: feature:345958-346176:1:exon
so has part: feature:346448-346594:1:exon
so has part: feature:346877-347117:1:exon
so has part: feature:347303-347467:1:exon
so has part: feature:347771-348702:1:exon

XP_040393938.1
type: Protein
SIO_000068: ncbiprotein

position:348702:1
position: 348702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:335280-335283:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:336259-336938:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:342292-342715:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:344694-344855:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:345958-346176:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:346448-346594:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:346877-347117:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:347303-347467:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:347771-348702:1:exon

POLRMT
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: POLRMT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(350213..366243)
location: region:350213-366243:-1
so has part: feature:350213-366243:-1:exon
subclass of: SO_0000010

121060135
type: Gene
SIO_000068: ncbigene

position:350213:-1
position: 350213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:366243:-1
position: 366243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:350213-366243:-1:exon

POLRMT
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: POLRMT
product: RNA polymerase mitochondrial, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 105 long SRA reads, 3 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_040537628.1
SIO_010081: POLRMT
subclass of: SO_0000673
so part of: POLRMT
location: complement(join(350213..350913,351754..351824,352376..352458,352934..353006,353276..353374,353622..353674,354402..354515,354815..354901,355651..355830,356788..356910,358890..359012,359560..360339,360551..360790,361463..361633,361962..362129,362287..362436,362875..363061,363628..363758,364116..364789,365440..365535,366139..366243))
location: region:350213-366243:-1
so has part: feature:366139-366243:-1:exon
so has part: feature:365440-365535:-1:exon
so has part: feature:364116-364789:-1:exon
so has part: feature:363628-363758:-1:exon
so has part: feature:362875-363061:-1:exon
so has part: feature:362287-362436:-1:exon
so has part: feature:361962-362129:-1:exon
so has part: feature:361463-361633:-1:exon
so has part: feature:360551-360790:-1:exon
so has part: feature:359560-360339:-1:exon
so has part: feature:358890-359012:-1:exon
so has part: feature:356788-356910:-1:exon
so has part: feature:355651-355830:-1:exon
so has part: feature:354815-354901:-1:exon
so has part: feature:354402-354515:-1:exon
so has part: feature:353622-353674:-1:exon
so has part: feature:353276-353374:-1:exon
so has part: feature:352934-353006:-1:exon
so has part: feature:352376-352458:-1:exon
so has part: feature:351754-351824:-1:exon
so has part: feature:350213-350913:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:366139-366243:-1:exon

position:366139:-1
position: 366139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:365440-365535:-1:exon

position:365440:-1
position: 365440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:365535:-1
position: 365535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:364116-364789:-1:exon

position:364116:-1
position: 364116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:364789:-1
position: 364789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:363628-363758:-1:exon

position:363628:-1
position: 363628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:363758:-1
position: 363758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:362875-363061:-1:exon

position:362875:-1
position: 362875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:363061:-1
position: 363061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:362287-362436:-1:exon

position:362287:-1
position: 362287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:362436:-1
position: 362436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:361962-362129:-1:exon

position:361962:-1
position: 361962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:362129:-1
position: 362129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:361463-361633:-1:exon

position:361463:-1
position: 361463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:361633:-1
position: 361633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:360551-360790:-1:exon

position:360551:-1
position: 360551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:360790:-1
position: 360790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:359560-360339:-1:exon

position:359560:-1
position: 359560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:360339:-1
position: 360339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:358890-359012:-1:exon

position:358890:-1
position: 358890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:359012:-1
position: 359012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:356788-356910:-1:exon

position:356788:-1
position: 356788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:356910:-1
position: 356910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:355651-355830:-1:exon

position:355651:-1
position: 355651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:355830:-1
position: 355830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:354815-354901:-1:exon

position:354815:-1
position: 354815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:354901:-1
position: 354901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:354402-354515:-1:exon

position:354402:-1
position: 354402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:354515:-1
position: 354515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:353622-353674:-1:exon

position:353622:-1
position: 353622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:353674:-1
position: 353674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:353276-353374:-1:exon

position:353276:-1
position: 353276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:353374:-1
position: 353374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:352934-353006:-1:exon

position:352934:-1
position: 352934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:353006:-1
position: 353006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:352376-352458:-1:exon

position:352376:-1
position: 352376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:352458:-1
position: 352458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:351754-351824:-1:exon

position:351754:-1
position: 351754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:351824:-1
position: 351824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:350213-350913:-1:exon

position:350913:-1
position: 350913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

POLRMT
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: POLRMT
product: RNA polymerase mitochondrial, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 long SRA reads, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_040537629.1
SIO_010081: POLRMT
subclass of: SO_0000673
so part of: POLRMT
location: complement(join(350213..350913,351754..351824,352376..352458,352934..353006,353276..353374,353622..353674,354402..354515,354815..354901,355651..355830,356788..356910,358890..359012,359560..360339,360551..360790,361463..361633,361962..362129,362287..362394,362875..363061,363628..363758,364116..364789,365440..365535,366139..366232))
location: region:350213-366232:-1
so has part: feature:366139-366232:-1:exon
so has part: feature:365440-365535:-1:exon
so has part: feature:364116-364789:-1:exon
so has part: feature:363628-363758:-1:exon
so has part: feature:362875-363061:-1:exon
so has part: feature:362287-362394:-1:exon
so has part: feature:361962-362129:-1:exon
so has part: feature:361463-361633:-1:exon
so has part: feature:360551-360790:-1:exon
so has part: feature:359560-360339:-1:exon
so has part: feature:358890-359012:-1:exon
so has part: feature:356788-356910:-1:exon
so has part: feature:355651-355830:-1:exon
so has part: feature:354815-354901:-1:exon
so has part: feature:354402-354515:-1:exon
so has part: feature:353622-353674:-1:exon
so has part: feature:353276-353374:-1:exon
so has part: feature:352934-353006:-1:exon
so has part: feature:352376-352458:-1:exon
so has part: feature:351754-351824:-1:exon
so has part: feature:350213-350913:-1:exon

position:366232:-1
position: 366232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:366139-366232:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:365440-365535:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:364116-364789:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:363628-363758:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:362875-363061:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:362287-362394:-1:exon

position:362394:-1
position: 362394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:361962-362129:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:361463-361633:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:360551-360790:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:359560-360339:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:358890-359012:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:356788-356910:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:355651-355830:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:354815-354901:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:354402-354515:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:353622-353674:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:353276-353374:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:352934-353006:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:352376-352458:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:351754-351824:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:350213-350913:-1:exon

POLRMT
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: POLRMT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA-directed RNA polymerase, mitochondrial isoform X2
translation: MALLRLRAALLGPARLRGGGIPWSVLRTYSSVSAKEKARRNAVCERTELLEVLKARVKQLQASSVPEVTVTKAELAPLGIDRRQEPLRQAVAARAAKEPPAPRQSAAGPAQPSGWVEKLRREMYVRQAKVERKLSIAASKMTLVGQANAKVKVKAIPKTKAKAKPKAKKSPKETKATAWSQSHAGPSSAYACSKPRAVETKQGVKAEKPPNVPEKRESNHQKIVQQTIQSNLECLLCLQQPEEAERLLLSYHSSPVKRKLLNVGAYNVVMRSWARKGCLHRLSRLLSMLESAGLRPSLDSYAAALECMGRSQACTKIIWRCVQQLKHDGFHVDELFQKCLFEGDEKETVLRAVRIVQPDYQLPPAPKPQTCKSALLSNFYSKELRERFQQQLEMELNSTITIESVESTKPLTPQALRARKQLAALRSQWRGAILQALQKSKHNMSQKRTMSGYNSLYPYLCLLPDEEYVDIMMQILNTLSPQGESLSVLARELGSKVYDRYLTQRKLRSRQLEKVQQIYEDYIHLLAKDGQPAEYLPREYWEKLVAEAGYGPSLTLKDCSWPYVLLMRLGVCLLEILVHSVKVPRNTLKPRLESRLIPVLYHIYSFRSSWQVGLIKPHPIFSQLVSDAAETTLTFNSSVIPMLCPPIPWTSPHFGAFVLSDTKLMRYVDGAFQHQQLLDQCPQVNLHPVLDALNQLGNCAWKINQPVLDIIISIFNNKGNEKLDIPPPLSEAPKPPVTPSNSSAWHKSQKHELLLCKKKAAEMHSLRMDALYKLSIANYVRDKVFWFPHNMDFRGRTYPCPPYFNHLGNDVTRAILLFAEGRPLGPKGLDWLKIHLINLTGLKKKNSLQERLRYANEILEEILDSADRPLTGRKWWMNTDEPWQVLACCMEIAKASRSPDPAAFVSHFPVHQDGSCNGLQHYAALGRDLIGAISVNLMPCSVPQDVYSAVAQQVEEFRKKDAAEGLKIAQVLEGFIGRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEIDEFPEEYLWEASHYLVRQVFNGIKEMFSATRDIQHWLTESAKLIAQSGQTVEWVTPMGLPIVQPYYRVRSTVLNSNMQNLSVKSCANTNQKPDTVKQKNAFPPNFIHSLDSTHMMLTALHCFRQGLTFVSVHDCYWTHALTVDVMNQICRQQFVALHSQKILQDLSEFMLKKYCSPSKESRAPWQKKLMEQLSNVPETGEFNLTKVMDSTYFFS
SIO_010081: POLRMT
subclass of: SO_0000673
so part of: POLRMT
location: complement(join(350864..350913,351754..351824,352376..352458,352934..353006,353276..353374,353622..353674,354402..354515,354815..354901,355651..355830,356788..356910,358890..359012,359560..360339,360551..360790,361463..361633,361962..362129,362287..362394,362875..363061,363628..363758,364116..364789,365440..365535,366139..366196))
location: region:350864-366196:-1
so has part: feature:366139-366196:-1:exon
so has part: feature:365440-365535:-1:exon
so has part: feature:364116-364789:-1:exon
so has part: feature:363628-363758:-1:exon
so has part: feature:362875-363061:-1:exon
so has part: feature:362287-362394:-1:exon
so has part: feature:361962-362129:-1:exon
so has part: feature:361463-361633:-1:exon
so has part: feature:360551-360790:-1:exon
so has part: feature:359560-360339:-1:exon
so has part: feature:358890-359012:-1:exon
so has part: feature:356788-356910:-1:exon
so has part: feature:355651-355830:-1:exon
so has part: feature:354815-354901:-1:exon
so has part: feature:354402-354515:-1:exon
so has part: feature:353622-353674:-1:exon
so has part: feature:353276-353374:-1:exon
so has part: feature:352934-353006:-1:exon
so has part: feature:352376-352458:-1:exon
so has part: feature:351754-351824:-1:exon
so has part: feature:350864-350913:-1:exon

XP_040393563.1
type: Protein
SIO_000068: ncbiprotein

position:350864:-1
position: 350864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:366196:-1
position: 366196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:366139-366196:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:365440-365535:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:364116-364789:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:363628-363758:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:362875-363061:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:362287-362394:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:361962-362129:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:361463-361633:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:360551-360790:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:359560-360339:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:358890-359012:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:356788-356910:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:355651-355830:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:354815-354901:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:354402-354515:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:353622-353674:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:353276-353374:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:352934-353006:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:352376-352458:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:351754-351824:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:350864-350913:-1:exon

POLRMT
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: POLRMT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA-directed RNA polymerase, mitochondrial isoform X1
translation: MALLRLRAALLGPARLRGGGIPWSVLRTYSSVSAKEKARRNAVCERTELLEVLKARVKQLQASSVPEVTVTKAELAPLGIDRRQEPLRQAVAARAAKEPPAPRQSAAGPAQPSGWVEKLRREMYVRQAKVERKLSIAASKMTLVGQANAKVKVKAIPKTKAKAKPKAKKSPKETKATAWSQSHAGPSSAYACSKPRAVETKQGVKAEKPPNVPEKRESNHQKIVQQTIQSNLECLLCLQQPEEAERLLLSYHSSPVKRKLLNVGAYNVVMRSWARKGCLHRLSRLLSMLESAGLRPSLDSYAAALECMGRSQACTKIIWRCVQQLKHDGFHVDELFQKCLFEGDEKETVLRAVRIVQPDYQLPPAPKPQTCKSALLSNFYSKEKAVSYPKLDFSVQELRERFQQQLEMELNSTITIESVESTKPLTPQALRARKQLAALRSQWRGAILQALQKSKHNMSQKRTMSGYNSLYPYLCLLPDEEYVDIMMQILNTLSPQGESLSVLARELGSKVYDRYLTQRKLRSRQLEKVQQIYEDYIHLLAKDGQPAEYLPREYWEKLVAEAGYGPSLTLKDCSWPYVLLMRLGVCLLEILVHSVKVPRNTLKPRLESRLIPVLYHIYSFRSSWQVGLIKPHPIFSQLVSDAAETTLTFNSSVIPMLCPPIPWTSPHFGAFVLSDTKLMRYVDGAFQHQQLLDQCPQVNLHPVLDALNQLGNCAWKINQPVLDIIISIFNNKGNEKLDIPPPLSEAPKPPVTPSNSSAWHKSQKHELLLCKKKAAEMHSLRMDALYKLSIANYVRDKVFWFPHNMDFRGRTYPCPPYFNHLGNDVTRAILLFAEGRPLGPKGLDWLKIHLINLTGLKKKNSLQERLRYANEILEEILDSADRPLTGRKWWMNTDEPWQVLACCMEIAKASRSPDPAAFVSHFPVHQDGSCNGLQHYAALGRDLIGAISVNLMPCSVPQDVYSAVAQQVEEFRKKDAAEGLKIAQVLEGFIGRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEIDEFPEEYLWEASHYLVRQVFNGIKEMFSATRDIQHWLTESAKLIAQSGQTVEWVTPMGLPIVQPYYRVRSTVLNSNMQNLSVKSCANTNQKPDTVKQKNAFPPNFIHSLDSTHMMLTALHCFRQGLTFVSVHDCYWTHALTVDVMNQICRQQFVALHSQKILQDLSEFMLKKYCSPSKESRAPWQKKLMEQLSNVPETGEFNLTKVMDSTYFFS
SIO_010081: POLRMT
subclass of: SO_0000673
so part of: POLRMT
location: complement(join(350864..350913,351754..351824,352376..352458,352934..353006,353276..353374,353622..353674,354402..354515,354815..354901,355651..355830,356788..356910,358890..359012,359560..360339,360551..360790,361463..361633,361962..362129,362287..362436,362875..363061,363628..363758,364116..364789,365440..365535,366139..366196))
location: region:350864-366196:-1
so has part: feature:366139-366196:-1:exon
so has part: feature:365440-365535:-1:exon
so has part: feature:364116-364789:-1:exon
so has part: feature:363628-363758:-1:exon
so has part: feature:362875-363061:-1:exon
so has part: feature:362287-362436:-1:exon
so has part: feature:361962-362129:-1:exon
so has part: feature:361463-361633:-1:exon
so has part: feature:360551-360790:-1:exon
so has part: feature:359560-360339:-1:exon
so has part: feature:358890-359012:-1:exon
so has part: feature:356788-356910:-1:exon
so has part: feature:355651-355830:-1:exon
so has part: feature:354815-354901:-1:exon
so has part: feature:354402-354515:-1:exon
so has part: feature:353622-353674:-1:exon
so has part: feature:353276-353374:-1:exon
so has part: feature:352934-353006:-1:exon
so has part: feature:352376-352458:-1:exon
so has part: feature:351754-351824:-1:exon
so has part: feature:350864-350913:-1:exon

XP_040393562.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:366139-366196:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:365440-365535:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:364116-364789:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:363628-363758:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:362875-363061:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:362287-362436:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:361962-362129:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:361463-361633:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:360551-360790:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:359560-360339:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:358890-359012:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:356788-356910:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:355651-355830:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:354815-354901:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:354402-354515:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:353622-353674:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:353276-353374:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:352934-353006:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:352376-352458:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:351754-351824:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:350864-350913:-1:exon

POLRMT
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 8869
gene: POLRMT
product: RNA polymerase mitochondrial, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 long SRA reads, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_005814748.1
SIO_010081: POLRMT
so part of: POLRMT
location: complement(join(352390..352458,352934..353006,353276..353457,353622..353674,354402..354515,354815..354901,355651..355830,356788..356910,358890..359012,359560..360339,360551..360790,361463..361633,361962..362129,362287..362436,362875..363061,363628..363758,364116..364789,365440..365535,366139..366232))
location: region:352390-366232:-1
so has part: feature:366139-366232:-1:exon
so has part: feature:365440-365535:-1:exon
so has part: feature:364116-364789:-1:exon
so has part: feature:363628-363758:-1:exon
so has part: feature:362875-363061:-1:exon
so has part: feature:362287-362436:-1:exon
so has part: feature:361962-362129:-1:exon
so has part: feature:361463-361633:-1:exon
so has part: feature:360551-360790:-1:exon
so has part: feature:359560-360339:-1:exon
so has part: feature:358890-359012:-1:exon
so has part: feature:356788-356910:-1:exon
so has part: feature:355651-355830:-1:exon
so has part: feature:354815-354901:-1:exon
so has part: feature:354402-354515:-1:exon
so has part: feature:353622-353674:-1:exon
so has part: feature:353276-353457:-1:exon
so has part: feature:352934-353006:-1:exon
so has part: feature:352390-352458:-1:exon

position:352390:-1
position: 352390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:366139-366232:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:365440-365535:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:364116-364789:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:363628-363758:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:362875-363061:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:362287-362436:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:361962-362129:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:361463-361633:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:360551-360790:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:359560-360339:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:358890-359012:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:356788-356910:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:355651-355830:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:354815-354901:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:354402-354515:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:353622-353674:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:353276-353457:-1:exon

position:353457:-1
position: 353457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:352934-353006:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:352390-352458:-1:exon

FGF22
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: FGF22
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 366935..371546
location: region:366935-371546:1
so has part: feature:366935-371546:1:exon
subclass of: SO_0000010

121060308
type: Gene
SIO_000068: ncbigene

position:366935:1
position: 366935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:371546:1
position: 371546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:366935-371546:1:exon

FGF22
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: FGF22
product: fibroblast growth factor 22
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_040538006.1
SIO_010081: FGF22
subclass of: SO_0000673
so part of: FGF22
location: join(366935..367190,370887..370990,371273..371546)
location: region:366935-371546:1
so has part: feature:366935-367190:1:exon
so has part: feature:370887-370990:1:exon
so has part: feature:371273-371546:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:366935-367190:1:exon

position:367190:1
position: 367190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:370887-370990:1:exon

position:370887:1
position: 370887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:370990:1
position: 370990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:371273-371546:1:exon

position:371273:1
position: 371273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

FGF22
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: FGF22
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: fibroblast growth factor 22
translation: MRRGGPAALAACLAGALAVLAGPGPGPGPGPGAGSPPWGGRRPPRSYGHLEGDVRCRRLFSATRFFLRIDGGGGVEGTRWRERPGSIVEIRSVRVGVVAIRAVHTGFYLAMNKQGRLYGSKEFSPNCKFTERIEENGYNTYASLRWRHRGRPMFLSLNSKGRPQRGGQTRRQHLSTHFLPMLIS
SIO_010081: FGF22
subclass of: SO_0000673
so part of: FGF22
location: join(366935..367190,370887..370990,371273..371467)
location: region:366935-371467:1
so has part: feature:366935-367190:1:exon
so has part: feature:370887-370990:1:exon
so has part: feature:371273-371467:1:exon

XP_040393940.1
type: Protein
SIO_000068: ncbiprotein

position:371467:1
position: 371467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:366935-367190:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:370887-370990:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:371273-371467:1:exon

RNF126
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: RNF126
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(374173..383215)
location: region:374173-383215:-1
so has part: feature:374173-383215:-1:exon
subclass of: SO_0000010

121060136
type: Gene
SIO_000068: ncbigene

position:374173:-1
position: 374173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:383215:-1
position: 383215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:374173-383215:-1:exon

RNF126
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: RNF126
product: ring finger protein 126
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 104 long SRA reads, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537631.1
SIO_010081: RNF126
subclass of: SO_0000673
so part of: RNF126
location: complement(join(374173..375451,375673..375788,376447..376540,376767..376836,376915..376983,377306..377547,378166..378229,379991..380049,383054..383215))
location: region:374173-383215:-1
so has part: feature:383054-383215:-1:exon
so has part: feature:379991-380049:-1:exon
so has part: feature:378166-378229:-1:exon
so has part: feature:377306-377547:-1:exon
so has part: feature:376915-376983:-1:exon
so has part: feature:376767-376836:-1:exon
so has part: feature:376447-376540:-1:exon
so has part: feature:375673-375788:-1:exon
so has part: feature:374173-375451:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:383054-383215:-1:exon

position:383054:-1
position: 383054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:379991-380049:-1:exon

position:379991:-1
position: 379991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:380049:-1
position: 380049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:378166-378229:-1:exon

position:378166:-1
position: 378166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:378229:-1
position: 378229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:377306-377547:-1:exon

position:377306:-1
position: 377306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:377547:-1
position: 377547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:376915-376983:-1:exon

position:376915:-1
position: 376915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:376983:-1
position: 376983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:376767-376836:-1:exon

position:376767:-1
position: 376767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:376836:-1
position: 376836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:376447-376540:-1:exon

position:376447:-1
position: 376447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:376540:-1
position: 376540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:375673-375788:-1:exon

position:375673:-1
position: 375673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:375788:-1
position: 375788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:374173-375451:-1:exon

position:375451:-1
position: 375451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RNF126
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: RNF126
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase RNF126
translation: MAEASPQPGRFFCHCCAAEIAPRLPDYICPRCESGFIEELPEEPRNTDNETSSSTSTSDQSRHPFENVDQHLFTLPQGYGQFAFGIFDDGFEIPFGSNVQSEDNRDSENRREREHQSRHRYGARQPRARLAARRAAGRHEGVPTLEGIIQQLVNGIIAPTTIPNLGLGPWGVLHSNPMDYAWGANGLDAIITQLLNQFENTGPPPADKEKIQALPTIQITQEHVDSGLECPVCKEDYTVGENVRQLPCNHLFHNSCIVPWLEQHDTCPVCRKSLSGQNTATNPPGLTGMNFSSSSSSSSSSSPSNENSSNNS
SIO_010081: RNF126
subclass of: SO_0000673
so part of: RNF126
location: complement(join(375302..375451,375673..375788,376447..376540,376767..376836,376915..376983,377306..377547,378166..378229,379991..380049,383054..383128))
location: region:375302-383128:-1
so has part: feature:383054-383128:-1:exon
so has part: feature:379991-380049:-1:exon
so has part: feature:378166-378229:-1:exon
so has part: feature:377306-377547:-1:exon
so has part: feature:376915-376983:-1:exon
so has part: feature:376767-376836:-1:exon
so has part: feature:376447-376540:-1:exon
so has part: feature:375673-375788:-1:exon
so has part: feature:375302-375451:-1:exon

XP_040393565.1
type: Protein
SIO_000068: ncbiprotein

position:375302:-1
position: 375302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:383128:-1
position: 383128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:383054-383128:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:379991-380049:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:378166-378229:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:377306-377547:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:376915-376983:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:376767-376836:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:376447-376540:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:375673-375788:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:375302-375451:-1:exon

FSTL3
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: FSTL3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 393164..402701
location: region:393164-402701:1
so has part: feature:393164-402701:1:exon
subclass of: SO_0000010

121060137
type: Gene
SIO_000068: ncbigene

position:393164:1
position: 393164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:402701:1
position: 402701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:393164-402701:1:exon

FSTL3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: FSTL3
product: follistatin like 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 long SRA reads, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537632.1
SIO_010081: FSTL3
subclass of: SO_0000673
so part of: FSTL3
location: join(393164..393322,396933..397118,399676..399891,401264..401491,401590..402701)
location: region:393164-402701:1
so has part: feature:393164-393322:1:exon
so has part: feature:396933-397118:1:exon
so has part: feature:399676-399891:1:exon
so has part: feature:401264-401491:1:exon
so has part: feature:401590-402701:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:393164-393322:1:exon

position:393322:1
position: 393322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:396933-397118:1:exon

position:396933:1
position: 396933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:397118:1
position: 397118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:399676-399891:1:exon

position:399676:1
position: 399676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:399891:1
position: 399891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:401264-401491:1:exon

position:401264:1
position: 401264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:401491:1
position: 401491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:401590-402701:1:exon

position:401590:1
position: 401590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

FSTL3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: FSTL3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: follistatin-related protein 3
translation: MPLRLALCLLALCGPAGGDAAHGGICWLQQGKEAKCTMILKTGVTWEECCANGNVDVAWSNYTYPGNKISLLGFLGLVTCHPCKESCEGVVCGPDKVCKMKHGRPQCACAPDCSSLPRKLQVCGSDGYTYRDECDLLTAKCRDHPDLEVMYQGKCKKSCSSVVCPGTHTCVVDQTGSAHCVTCRTAPCPEPTSLDHALCGNNNVTYPSACHLRRATCHLGRSIGVRHYGSCSAAAKFSLETDNAEENYV
SIO_010081: FSTL3
subclass of: SO_0000673
so part of: FSTL3
location: join(393256..393322,396933..397118,399676..399891,401264..401491,401590..401642)
location: region:393256-401642:1
so has part: feature:393256-393322:1:exon
so has part: feature:396933-397118:1:exon
so has part: feature:399676-399891:1:exon
so has part: feature:401264-401491:1:exon
so has part: feature:401590-401642:1:exon

XP_040393566.1
type: Protein
SIO_000068: ncbiprotein

position:393256:1
position: 393256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:401642:1
position: 401642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:393256-393322:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:396933-397118:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:399676-399891:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:401264-401491:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:401590-401642:1:exon

PRSS57
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: PRSS57
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(404942..406589)
location: region:404942-406589:-1
so has part: feature:404942-406589:-1:exon
subclass of: SO_0000010

121060309
type: Gene
SIO_000068: ncbigene

position:404942:-1
position: 404942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:406589:-1
position: 406589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:404942-406589:-1:exon

PRSS57
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PRSS57
product: serine protease 57
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 87% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_040538007.1
SIO_010081: PRSS57
subclass of: SO_0000673
so part of: PRSS57
location: complement(join(404942..405482,405557..405817,406166..406463,406510..406589))
location: region:404942-406589:-1
so has part: feature:406510-406589:-1:exon
so has part: feature:406166-406463:-1:exon
so has part: feature:405557-405817:-1:exon
so has part: feature:404942-405482:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:406510-406589:-1:exon

position:406510:-1
position: 406510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:406166-406463:-1:exon

position:406166:-1
position: 406166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:406463:-1
position: 406463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:405557-405817:-1:exon

position:405557:-1
position: 405557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:405817:-1
position: 405817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:404942-405482:-1:exon

position:405482:-1
position: 405482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PRSS57
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PRSS57
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine protease 57
translation: MDGQHVCGGFLVWPKWVMTAAHCPIPRTRRGPIGVDAPILGGLRGAGAAPQPPRPPSPVRPRGLPARRCPLTVPRGRRRNPLVRVVLGAHRLEQPEESQQVFGVEESIAHPLYDPRTVDNDIRLLRLNGSATLNKYVKRIRLPSPHVDLKPGTVCLVLGWGDTSNYGERPEQLMETDTTIVKRSLCRTLWRGRVSANMLCGASRNATLRGVCAGDSGGPLIFKRKVYGIVSFSGERCGDRRYPDIYTKISNYIDWVHLIVLKHRHPEGQQKHKPGPGAAKGPGAGRLWGPAGGPRHHNGLAAPRRAGKGRDSWAPLQLQGL
SIO_010081: PRSS57
subclass of: SO_0000673
so part of: PRSS57
location: complement(join(405156..405482,405557..405817,406166..406463,406510..406589))
location: region:405156-406589:-1
so has part: feature:406510-406589:-1:exon
so has part: feature:406166-406463:-1:exon
so has part: feature:405557-405817:-1:exon
so has part: feature:405156-405482:-1:exon

XP_040393941.1
type: Protein
SIO_000068: ncbiprotein

position:405156:-1
position: 405156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:406510-406589:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:406166-406463:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:405557-405817:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:405156-405482:-1:exon

PALM
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: PALM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 406206..423646
location: region:406206-423646:1
so has part: feature:406206-423646:1:exon
subclass of: SO_0000010

121060138
type: Gene
SIO_000068: ncbigene

position:406206:1
position: 406206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:423646:1
position: 423646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:406206-423646:1:exon

PALM
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PALM
product: paralemmin, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_040537633.1
SIO_010081: PALM
subclass of: SO_0000673
so part of: PALM
location: join(406206..406273,415624..415672,416470..416550,416651..416781,417642..417765,417927..417948,418111..418170,419220..419351,420782..423646)
location: region:406206-423646:1
so has part: feature:406206-406273:1:exon
so has part: feature:415624-415672:1:exon
so has part: feature:416470-416550:1:exon
so has part: feature:416651-416781:1:exon
so has part: feature:417642-417765:1:exon
so has part: feature:417927-417948:1:exon
so has part: feature:418111-418170:1:exon
so has part: feature:419220-419351:1:exon
so has part: feature:420782-423646:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:406206-406273:1:exon

position:406273:1
position: 406273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:415624-415672:1:exon

position:415624:1
position: 415624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:415672:1
position: 415672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:416470-416550:1:exon

position:416470:1
position: 416470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:416550:1
position: 416550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:416651-416781:1:exon

position:416651:1
position: 416651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:416781:1
position: 416781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:417642-417765:1:exon

position:417642:1
position: 417642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:417765:1
position: 417765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:417927-417948:1:exon

position:417927:1
position: 417927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:417948:1
position: 417948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:418111-418170:1:exon

position:418111:1
position: 418111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:418170:1
position: 418170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:419220-419351:1:exon

position:419220:1
position: 419220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:419351:1
position: 419351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:420782-423646:1:exon

position:420782:1
position: 420782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PALM
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PALM
product: paralemmin, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_040537636.1
SIO_010081: PALM
subclass of: SO_0000673
so part of: PALM
location: join(406206..406273,415624..415672,416470..416550,416651..416781,417642..417765,417927..417948,418111..418170,420782..423646)
location: region:406206-423646:1
so has part: feature:406206-406273:1:exon
so has part: feature:415624-415672:1:exon
so has part: feature:416470-416550:1:exon
so has part: feature:416651-416781:1:exon
so has part: feature:417642-417765:1:exon
so has part: feature:417927-417948:1:exon
so has part: feature:418111-418170:1:exon
so has part: feature:420782-423646:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:406206-406273:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:415624-415672:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:416470-416550:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:416651-416781:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:417642-417765:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:417927-417948:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:418111-418170:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:420782-423646:1:exon

PALM
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PALM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: paralemmin-1 isoform X1
translation: MDSSTPKTCWDSSGCSSRAVEASTLQQERLQAIAEKRKRQTEIENKRRQLEDDRRQLQHLKSKALRERWLLEGAPSSASEEDEAMKKQMQEDEVKTKELEETIQRLEKELETLENSSSVASTKENLAEVAAVPAKEKAETVPNAQKSPLGTAVAKKVSSSPMKAVEGTDMMKAAMYSVEITVEKDRVTGETKVLSSTTLLPQNHCLQGVKVYEDELKVVHAVSAEAGALQNGAHPLSSSEVDELLHKADEVTLSEVKVGEEAPGSAPSSQKPTPRREITGLQAKPRENSTALLPGEGAEPSREQPVTMIFMGYQNVEDENETKKVLGLEGTIKAELVVIEDAESKEPACKDHAPPNGTALEPAAALPQGEEAPGGQKLGANATEAKEAEQDMDAKKQRCKCCTVM
SIO_010081: PALM
subclass of: SO_0000673
so part of: PALM
location: join(406221..406273,415624..415672,416470..416550,416651..416781,417642..417765,417927..417948,418111..418170,419220..419351,420782..421347)
location: region:406221-421347:1
so has part: feature:406221-406273:1:exon
so has part: feature:415624-415672:1:exon
so has part: feature:416470-416550:1:exon
so has part: feature:416651-416781:1:exon
so has part: feature:417642-417765:1:exon
so has part: feature:417927-417948:1:exon
so has part: feature:418111-418170:1:exon
so has part: feature:419220-419351:1:exon
so has part: feature:420782-421347:1:exon

XP_040393567.1
type: Protein
SIO_000068: ncbiprotein

position:406221:1
position: 406221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:421347:1
position: 421347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:406221-406273:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:415624-415672:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:416470-416550:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:416651-416781:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:417642-417765:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:417927-417948:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:418111-418170:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:419220-419351:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:420782-421347:1:exon

PALM
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PALM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: paralemmin-1 isoform X4
translation: MDSSTPKTCWDSSGCSSRAVEASTLQQERLQAIAEKRKRQTEIENKRRQLEDDRRQLQHLKSKALRERWLLEGAPSSASEEDEAMKKQMQEDEVKTKELEETIQRLEKELETLENSSSVASTKENLAEVAAVPAKEKAETVPNAQKSPLGTAVAKKVSSSPMKAVEGTDMMKAVVHAVSAEAGALQNGAHPLSSSEVDELLHKADEVTLSEVKVGEEAPGSAPSSQKPTPRREITGLQAKPRENSTALLPGEGAEPSREQPVTMIFMGYQNVEDENETKKVLGLEGTIKAELVVIEDAESKEPACKDHAPPNGTALEPAAALPQGEEAPGGQKLGANATEAKEAEQDMDAKKQRCKCCTVM
SIO_010081: PALM
subclass of: SO_0000673
so part of: PALM
location: join(406221..406273,415624..415672,416470..416550,416651..416781,417642..417765,417927..417948,418111..418170,420782..421347)
location: region:406221-421347:1
so has part: feature:406221-406273:1:exon
so has part: feature:415624-415672:1:exon
so has part: feature:416470-416550:1:exon
so has part: feature:416651-416781:1:exon
so has part: feature:417642-417765:1:exon
so has part: feature:417927-417948:1:exon
so has part: feature:418111-418170:1:exon
so has part: feature:420782-421347:1:exon

XP_040393570.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:406221-406273:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:415624-415672:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:416470-416550:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:416651-416781:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:417642-417765:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:417927-417948:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:418111-418170:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:420782-421347:1:exon

PALM
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PALM
product: paralemmin, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_040537635.1
SIO_010081: PALM
subclass of: SO_0000673
so part of: PALM
location: join(408105..408220,415624..415672,416470..416550,416651..416781,417642..417765,417927..417948,418111..418170,419220..419351,420782..423646)
location: region:408105-423646:1
so has part: feature:408105-408220:1:exon
so has part: feature:415624-415672:1:exon
so has part: feature:416470-416550:1:exon
so has part: feature:416651-416781:1:exon
so has part: feature:417642-417765:1:exon
so has part: feature:417927-417948:1:exon
so has part: feature:418111-418170:1:exon
so has part: feature:419220-419351:1:exon
so has part: feature:420782-423646:1:exon

position:408105:1
position: 408105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:408105-408220:1:exon

position:408220:1
position: 408220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:415624-415672:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:416470-416550:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:416651-416781:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:417642-417765:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:417927-417948:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:418111-418170:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:419220-419351:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:420782-423646:1:exon

PALM
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PALM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: paralemmin-1 isoform X3
translation: MEAVEASTLQQERLQAIAEKRKRQTEIENKRRQLEDDRRQLQHLKSKALRERWLLEGAPSSASEEDEAMKKQMQEDEVKTKELEETIQRLEKELETLENSSSVASTKENLAEVAAVPAKEKAETVPNAQKSPLGTAVAKKVSSSPMKAVEGTDMMKAAMYSVEITVEKDRVTGETKVLSSTTLLPQNHCLQGVKVYEDELKVVHAVSAEAGALQNGAHPLSSSEVDELLHKADEVTLSEVKVGEEAPGSAPSSQKPTPRREITGLQAKPRENSTALLPGEGAEPSREQPVTMIFMGYQNVEDENETKKVLGLEGTIKAELVVIEDAESKEPACKDHAPPNGTALEPAAALPQGEEAPGGQKLGANATEAKEAEQDMDAKKQRCKCCTVM
SIO_010081: PALM
subclass of: SO_0000673
so part of: PALM
location: join(408216..408220,415624..415672,416470..416550,416651..416781,417642..417765,417927..417948,418111..418170,419220..419351,420782..421347)
location: region:408216-421347:1
so has part: feature:408216-408220:1:exon
so has part: feature:415624-415672:1:exon
so has part: feature:416470-416550:1:exon
so has part: feature:416651-416781:1:exon
so has part: feature:417642-417765:1:exon
so has part: feature:417927-417948:1:exon
so has part: feature:418111-418170:1:exon
so has part: feature:419220-419351:1:exon
so has part: feature:420782-421347:1:exon

XP_040393569.1
type: Protein
SIO_000068: ncbiprotein

position:408216:1
position: 408216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:408216-408220:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:415624-415672:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:416470-416550:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:416651-416781:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:417642-417765:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:417927-417948:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:418111-418170:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:419220-419351:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:420782-421347:1:exon

PALM
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PALM
product: paralemmin, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_040537634.1
SIO_010081: PALM
subclass of: SO_0000673
so part of: PALM
location: join(412161..412824,415624..415672,416470..416550,416651..416781,417642..417765,417927..417948,418111..418170,419220..419351,420782..423646)
location: region:412161-423646:1
so has part: feature:412161-412824:1:exon
so has part: feature:415624-415672:1:exon
so has part: feature:416470-416550:1:exon
so has part: feature:416651-416781:1:exon
so has part: feature:417642-417765:1:exon
so has part: feature:417927-417948:1:exon
so has part: feature:418111-418170:1:exon
so has part: feature:419220-419351:1:exon
so has part: feature:420782-423646:1:exon

position:412161:1
position: 412161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:412161-412824:1:exon

position:412824:1
position: 412824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:415624-415672:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:416470-416550:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:416651-416781:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:417642-417765:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:417927-417948:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:418111-418170:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:419220-419351:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:420782-423646:1:exon

PALM
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PALM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: paralemmin-1 isoform X2
translation: MNLFAGAHETGAVEASTLQQERLQAIAEKRKRQTEIENKRRQLEDDRRQLQHLKSKALRERWLLEGAPSSASEEDEAMKKQMQEDEVKTKELEETIQRLEKELETLENSSSVASTKENLAEVAAVPAKEKAETVPNAQKSPLGTAVAKKVSSSPMKAVEGTDMMKAAMYSVEITVEKDRVTGETKVLSSTTLLPQNHCLQGVKVYEDELKVVHAVSAEAGALQNGAHPLSSSEVDELLHKADEVTLSEVKVGEEAPGSAPSSQKPTPRREITGLQAKPRENSTALLPGEGAEPSREQPVTMIFMGYQNVEDENETKKVLGLEGTIKAELVVIEDAESKEPACKDHAPPNGTALEPAAALPQGEEAPGGQKLGANATEAKEAEQDMDAKKQRCKCCTVM
SIO_010081: PALM
subclass of: SO_0000673
so part of: PALM
location: join(412793..412824,415624..415672,416470..416550,416651..416781,417642..417765,417927..417948,418111..418170,419220..419351,420782..421347)
location: region:412793-421347:1
so has part: feature:412793-412824:1:exon
so has part: feature:415624-415672:1:exon
so has part: feature:416470-416550:1:exon
so has part: feature:416651-416781:1:exon
so has part: feature:417642-417765:1:exon
so has part: feature:417927-417948:1:exon
so has part: feature:418111-418170:1:exon
so has part: feature:419220-419351:1:exon
so has part: feature:420782-421347:1:exon

XP_040393568.1
type: Protein
SIO_000068: ncbiprotein

position:412793:1
position: 412793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:412793-412824:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:415624-415672:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:416470-416550:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:416651-416781:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:417642-417765:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:417927-417948:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:418111-418170:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:419220-419351:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:420782-421347:1:exon

LOC121060139
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: LOC121060139
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 426139..432655
location: region:426139-432655:1
so has part: feature:426139-432655:1:exon
subclass of: SO_0000010

121060139
type: Gene
SIO_000068: ncbigene

position:426139:1
position: 426139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:432655:1
position: 432655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:426139-432655:1:exon

LOC121060139
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060139
product: mitotic spindle positioning
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 180 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_040537637.1
SIO_010081: LOC121060139
subclass of: SO_0000673
so part of: LOC121060139
location: join(426139..426435,428443..430603,431358..431569,431807..431845,432071..432655)
location: region:426139-432655:1
so has part: feature:426139-426435:1:exon
so has part: feature:428443-430603:1:exon
so has part: feature:431358-431569:1:exon
so has part: feature:431807-431845:1:exon
so has part: feature:432071-432655:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:426139-426435:1:exon

position:426435:1
position: 426435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:428443-430603:1:exon

position:428443:1
position: 428443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:430603:1
position: 430603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:431358-431569:1:exon

position:431358:1
position: 431358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:431569:1
position: 431569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:431807-431845:1:exon

position:431807:1
position: 431807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:431845:1
position: 431845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:432071-432655:1:exon

position:432071:1
position: 432071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121060139
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060139
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mitotic interactor and substrate of PLK1
translation: MSPAEFLEFLHGAQAELIRATQPWAAPAAPTPHHRPAKPLPEDAAQAGATLGHGDPHADGSRTGQQDPALCSRPLQVSPEPEGDREAEQCPQPQEGGELDADSSQEMDRVTRHLVFQLPQTAHRHDHAPADGDDDVFGSSQYGSQKVENGYEWRTSLKSPSYFLDGGKDVWTPSPDRESRLEVVRSGSLYDLRAYRGERKPSRLYEDDEQEQYRILPPNISPEKAKELEDKRREVIRGQVVRKSSTMAERWSSMDELSSINVGAGGQGEGKHKGTSTSSFAIYFDKPFSGRAATPVDPESIDREQINFAAARQQFLMLEKTNPGSLFSPGQQAMSPKPEAMTRISRQEWQSPETATKAERGYGDAGVPSQGRTDTTTYQVYNVSYRTPVKAEVYAQGRDDAGRLYPLGKTSSLTKASSRDDLDSGLGEMYAEGSAGYISNGSVSSEAFNGLVDVRNSSSSPDKELNASNETPIEREIRRALEREENLWKERGIQRLTSSSELVEIQTKPLLSMHASPVPGRKGKDKSRASFYVQREIEQETKREEDLKRQGRLLGLYDRGTQQELDERKKVFEQEETPPPKPAPARRAEEQRSWIHEEQSSSHSFGPAEDTQAGRALSTHTVNLTRSQAAQPRFVLPAGERGRGEPLAHEHASASASRWAREESRGGRLPGSTPSPAGTGVLRKEYFSFPFWKPRFSFVDDMGTQSPLRREKGPDGEDGRDEQYTLRTWKPQTSMLIEEEIRSDLQREEELQEQRRRRQLIDGSSLVSNDGFSKEGSRSRHSSAASGASGSYSVSGSPVLIPASRQAGVLGLVSSFTPLRVAAPAPDSTDGLSPDLAHSSPFEERRRRMKEDGKYAGIEPVDKINTEVVESTRVGRHKSAMAQRWEAGLYVRDED
SIO_010081: LOC121060139
subclass of: SO_0000673
so part of: LOC121060139
location: join(426247..426435,428443..430603,431358..431569,431807..431845,432071..432157)
location: region:426247-432157:1
so has part: feature:426247-426435:1:exon
so has part: feature:428443-430603:1:exon
so has part: feature:431358-431569:1:exon
so has part: feature:431807-431845:1:exon
so has part: feature:432071-432157:1:exon

XP_040393571.1
type: Protein
SIO_000068: ncbiprotein

position:426247:1
position: 426247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:432157:1
position: 432157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:426247-426435:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:428443-430603:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:431358-431569:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:431807-431845:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:432071-432157:1:exon

LOC121060140
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: LOC121060140
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(435097..458557)
location: region:435097-458557:-1
so has part: feature:435097-458557:-1:exon
subclass of: SO_0000010

121060140
type: Gene
SIO_000068: ncbigene

position:435097:-1
position: 435097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:458557:-1
position: 458557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:435097-458557:-1:exon

LOC121060140
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060140
product: uncharacterized protein KIAA1958 homolog, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_040537639.1
SIO_010081: LOC121060140
subclass of: SO_0000673
so part of: LOC121060140
location: complement(join(435097..436693,439463..440660,441419..441500,447937..448039,458147..458557))
location: region:435097-458557:-1
so has part: feature:458147-458557:-1:exon
so has part: feature:447937-448039:-1:exon
so has part: feature:441419-441500:-1:exon
so has part: feature:439463-440660:-1:exon
so has part: feature:435097-436693:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:458147-458557:-1:exon

position:458147:-1
position: 458147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:447937-448039:-1:exon

position:447937:-1
position: 447937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:448039:-1
position: 448039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:441419-441500:-1:exon

position:441419:-1
position: 441419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:441500:-1
position: 441500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:439463-440660:-1:exon

position:439463:-1
position: 439463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:440660:-1
position: 440660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:435097-436693:-1:exon

position:436693:-1
position: 436693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121060140
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060140
product: uncharacterized protein KIAA1958 homolog, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_040537640.1
SIO_010081: LOC121060140
subclass of: SO_0000673
so part of: LOC121060140
location: complement(join(435097..436693,439463..440660,441419..441500,447937..448039,451688..451984))
location: region:435097-451984:-1
so has part: feature:451688-451984:-1:exon
so has part: feature:447937-448039:-1:exon
so has part: feature:441419-441500:-1:exon
so has part: feature:439463-440660:-1:exon
so has part: feature:435097-436693:-1:exon

position:451984:-1
position: 451984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:451688-451984:-1:exon

position:451688:-1
position: 451688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:447937-448039:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:441419-441500:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:439463-440660:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:435097-436693:-1:exon

LOC121060140
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060140
product: uncharacterized protein KIAA1958 homolog, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_040537641.1
SIO_010081: LOC121060140
subclass of: SO_0000673
so part of: LOC121060140
location: complement(join(435097..436693,439463..440660,441419..441500,445619..446717))
location: region:435097-446717:-1
so has part: feature:445619-446717:-1:exon
so has part: feature:441419-441500:-1:exon
so has part: feature:439463-440660:-1:exon
so has part: feature:435097-436693:-1:exon

position:446717:-1
position: 446717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:445619-446717:-1:exon

position:445619:-1
position: 445619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:441419-441500:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:439463-440660:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:435097-436693:-1:exon

LOC121060140
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: LOC121060140
product: uncharacterized protein KIAA1958 homolog, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_040537638.1
SIO_010081: LOC121060140
subclass of: SO_0000673
so part of: LOC121060140
location: complement(join(435097..436693,439463..440672))
location: region:435097-440672:-1
so has part: feature:439463-440672:-1:exon
so has part: feature:435097-436693:-1:exon

position:440672:-1
position: 440672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:439463-440672:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:435097-436693:-1:exon

LOC121060140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060140
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein KIAA1958 homolog isoform X2
translation: MNESVSAERYGDVSSLRMDLSNLVTWAHTHGNICKQIPAFEVAQTSGHPGRDNSILWMCGGGHAYHWPCGKLHFRSREENEAVEKRKRLTSSEAPSREANSGGKRIRVTSSFERARTGTVATGSHRRSPGVTQQRDDTVYIVHNEPAPRENQKNSKSMKPCFAAEQHVSVSKGEIKTDVHTVKLGSNEDLQIISDDEQHMSDAENQGDRIRQNILSDLPLTSCVTAEADLQMHHDQKTAIIKQPATPTSGFAPTEKPPLTLPSILKSPVSNEKILESSFVCQGPPNPVEFTSETSTARNCTGSATPKEQLKQISVSNAEAKSQLESPTSVTFFQFEASVDVQQQLHLCCPECGTPGTGFSGNGTENPPEGSKPSVSELTPRHSASLSPESKNSDHPSSNRNGLKKRNRNAGDIKIFRDWLVLHCPSEVREIYKLPPEDLDNYLAWFYSSAKKQNGMDFSANSLYFFQSSIDRYLKDHNYEYSVVKGAEFRTSQEALKLRRQHLSQKEREGEWTILENLTDENVDALRKNGLLSQMTPQGFLHLMLINIIRGFGASTHNQSQNLYWGQLVLRKDEAGLEYLEWKNDLHAEETTGEAAPHLFARPDNPDNCPIQDYKKYAKKRPLDMLHDYDPLYLSPKPLYSMWDQVWYCRKSLTKSKMEKMLKVIIQQVKGTEKKAKK
SIO_010081: LOC121060140
subclass of: SO_0000673
so part of: LOC121060140
location: complement(join(435858..436693,439463..440660,441419..441421))
location: region:435858-441421:-1
so has part: feature:441419-441421:-1:exon
so has part: feature:439463-440660:-1:exon
so has part: feature:435858-436693:-1:exon

XP_040393573.1
type: Protein
SIO_000068: ncbiprotein

position:435858:-1
position: 435858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:441421:-1
position: 441421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441419-441421:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:439463-440660:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:435858-436693:-1:exon

LOC121060140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060140
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein KIAA1958 homolog isoform X2
translation: MNESVSAERYGDVSSLRMDLSNLVTWAHTHGNICKQIPAFEVAQTSGHPGRDNSILWMCGGGHAYHWPCGKLHFRSREENEAVEKRKRLTSSEAPSREANSGGKRIRVTSSFERARTGTVATGSHRRSPGVTQQRDDTVYIVHNEPAPRENQKNSKSMKPCFAAEQHVSVSKGEIKTDVHTVKLGSNEDLQIISDDEQHMSDAENQGDRIRQNILSDLPLTSCVTAEADLQMHHDQKTAIIKQPATPTSGFAPTEKPPLTLPSILKSPVSNEKILESSFVCQGPPNPVEFTSETSTARNCTGSATPKEQLKQISVSNAEAKSQLESPTSVTFFQFEASVDVQQQLHLCCPECGTPGTGFSGNGTENPPEGSKPSVSELTPRHSASLSPESKNSDHPSSNRNGLKKRNRNAGDIKIFRDWLVLHCPSEVREIYKLPPEDLDNYLAWFYSSAKKQNGMDFSANSLYFFQSSIDRYLKDHNYEYSVVKGAEFRTSQEALKLRRQHLSQKEREGEWTILENLTDENVDALRKNGLLSQMTPQGFLHLMLINIIRGFGASTHNQSQNLYWGQLVLRKDEAGLEYLEWKNDLHAEETTGEAAPHLFARPDNPDNCPIQDYKKYAKKRPLDMLHDYDPLYLSPKPLYSMWDQVWYCRKSLTKSKMEKMLKVIIQQVKGTEKKAKK
SIO_010081: LOC121060140
subclass of: SO_0000673
so part of: LOC121060140
location: complement(join(435858..436693,439463..440660,441419..441421))
location: region:435858-441421:-1
so has part: feature:441419-441421:-1:exon
so has part: feature:439463-440660:-1:exon
so has part: feature:435858-436693:-1:exon

XP_040393574.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:441419-441421:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:439463-440660:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:435858-436693:-1:exon

LOC121060140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060140
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein KIAA1958 homolog isoform X2
translation: MNESVSAERYGDVSSLRMDLSNLVTWAHTHGNICKQIPAFEVAQTSGHPGRDNSILWMCGGGHAYHWPCGKLHFRSREENEAVEKRKRLTSSEAPSREANSGGKRIRVTSSFERARTGTVATGSHRRSPGVTQQRDDTVYIVHNEPAPRENQKNSKSMKPCFAAEQHVSVSKGEIKTDVHTVKLGSNEDLQIISDDEQHMSDAENQGDRIRQNILSDLPLTSCVTAEADLQMHHDQKTAIIKQPATPTSGFAPTEKPPLTLPSILKSPVSNEKILESSFVCQGPPNPVEFTSETSTARNCTGSATPKEQLKQISVSNAEAKSQLESPTSVTFFQFEASVDVQQQLHLCCPECGTPGTGFSGNGTENPPEGSKPSVSELTPRHSASLSPESKNSDHPSSNRNGLKKRNRNAGDIKIFRDWLVLHCPSEVREIYKLPPEDLDNYLAWFYSSAKKQNGMDFSANSLYFFQSSIDRYLKDHNYEYSVVKGAEFRTSQEALKLRRQHLSQKEREGEWTILENLTDENVDALRKNGLLSQMTPQGFLHLMLINIIRGFGASTHNQSQNLYWGQLVLRKDEAGLEYLEWKNDLHAEETTGEAAPHLFARPDNPDNCPIQDYKKYAKKRPLDMLHDYDPLYLSPKPLYSMWDQVWYCRKSLTKSKMEKMLKVIIQQVKGTEKKAKK
SIO_010081: LOC121060140
subclass of: SO_0000673
so part of: LOC121060140
location: complement(join(435858..436693,439463..440660,441419..441421))
location: region:435858-441421:-1
so has part: feature:441419-441421:-1:exon
so has part: feature:439463-440660:-1:exon
so has part: feature:435858-436693:-1:exon

XP_040393575.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:441419-441421:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:439463-440660:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:435858-436693:-1:exon

LOC121060140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: LOC121060140
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein KIAA1958 homolog isoform X1
translation: MFLQNESVSAERYGDVSSLRMDLSNLVTWAHTHGNICKQIPAFEVAQTSGHPGRDNSILWMCGGGHAYHWPCGKLHFRSREENEAVEKRKRLTSSEAPSREANSGGKRIRVTSSFERARTGTVATGSHRRSPGVTQQRDDTVYIVHNEPAPRENQKNSKSMKPCFAAEQHVSVSKGEIKTDVHTVKLGSNEDLQIISDDEQHMSDAENQGDRIRQNILSDLPLTSCVTAEADLQMHHDQKTAIIKQPATPTSGFAPTEKPPLTLPSILKSPVSNEKILESSFVCQGPPNPVEFTSETSTARNCTGSATPKEQLKQISVSNAEAKSQLESPTSVTFFQFEASVDVQQQLHLCCPECGTPGTGFSGNGTENPPEGSKPSVSELTPRHSASLSPESKNSDHPSSNRNGLKKRNRNAGDIKIFRDWLVLHCPSEVREIYKLPPEDLDNYLAWFYSSAKKQNGMDFSANSLYFFQSSIDRYLKDHNYEYSVVKGAEFRTSQEALKLRRQHLSQKEREGEWTILENLTDENVDALRKNGLLSQMTPQGFLHLMLINIIRGFGASTHNQSQNLYWGQLVLRKDEAGLEYLEWKNDLHAEETTGEAAPHLFARPDNPDNCPIQDYKKYAKKRPLDMLHDYDPLYLSPKPLYSMWDQVWYCRKSLTKSKMEKMLKVIIQQVKGTEKKAKK
SIO_010081: LOC121060140
subclass of: SO_0000673
so part of: LOC121060140
location: complement(join(435858..436693,439463..440672))
location: region:435858-440672:-1
so has part: feature:439463-440672:-1:exon
so has part: feature:435858-436693:-1:exon

XP_040393572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:439463-440672:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:435858-436693:-1:exon

LOC121060142
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: LOC121060142
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 447102..452789
location: region:447102-452789:1
so has part: feature:447102-452789:1:exon
subclass of: SO_0000011

121060142
type: Gene
SIO_000068: ncbigene

position:447102:1
position: 447102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:452789:1
position: 452789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:447102-452789:1:exon

LOC121060142
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 8869
nc RNA class: lncRNA
gene: LOC121060142
product: uncharacterized LOC121060142, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_005814749.1
SIO_010081: LOC121060142
subclass of: SO_0000673
so part of: LOC121060142
location: join(447102..449660,451449..452789)
location: region:447102-452789:1
so has part: feature:447102-449660:1:exon
so has part: feature:451449-452789:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:447102-449660:1:exon

position:449660:1
position: 449660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:451449-452789:1:exon

position:451449:1
position: 451449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121060142
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 8869
nc RNA class: lncRNA
gene: LOC121060142
product: uncharacterized LOC121060142, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_005814750.1
SIO_010081: LOC121060142
subclass of: SO_0000673
so part of: LOC121060142
location: join(447102..449660,451541..452789)
location: region:447102-452789:1
so has part: feature:447102-449660:1:exon
so has part: feature:451541-452789:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:447102-449660:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:451541-452789:1:exon

position:451541:1
position: 451541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PTBP1
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: PTBP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 458725..489308
location: region:458725-489308:1
so has part: feature:458725-489308:1:exon
subclass of: SO_0000010

121060144
type: Gene
SIO_000068: ncbigene

position:458725:1
position: 458725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:489308:1
position: 489308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:458725-489308:1:exon

PTBP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PTBP1
product: polypyrimidine tract binding protein 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 299 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537645.1
SIO_010081: PTBP1
subclass of: SO_0000673
so part of: PTBP1
location: join(458725..458857,462953..462983,474197..474272,475229..475401,476370..476516,477822..477992,478802..478912,479306..479480,480079..480156,481432..481580,484228..484261,484756..484848,485228..485444,485684..485761,486161..489308)
location: region:458725-489308:1
so has part: feature:458725-458857:1:exon
so has part: feature:462953-462983:1:exon
so has part: feature:474197-474272:1:exon
so has part: feature:475229-475401:1:exon
so has part: feature:476370-476516:1:exon
so has part: feature:477822-477992:1:exon
so has part: feature:478802-478912:1:exon
so has part: feature:479306-479480:1:exon
so has part: feature:480079-480156:1:exon
so has part: feature:481432-481580:1:exon
so has part: feature:484228-484261:1:exon
so has part: feature:484756-484848:1:exon
so has part: feature:485228-485444:1:exon
so has part: feature:485684-485761:1:exon
so has part: feature:486161-489308:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:458725-458857:1:exon

position:458857:1
position: 458857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:462953-462983:1:exon

position:462953:1
position: 462953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:462983:1
position: 462983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:474197-474272:1:exon

position:474197:1
position: 474197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:474272:1
position: 474272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:475229-475401:1:exon

position:475229:1
position: 475229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:475401:1
position: 475401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:476370-476516:1:exon

position:476370:1
position: 476370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:476516:1
position: 476516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:477822-477992:1:exon

position:477822:1
position: 477822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:477992:1
position: 477992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:478802-478912:1:exon

position:478802:1
position: 478802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:478912:1
position: 478912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:479306-479480:1:exon

position:479306:1
position: 479306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:479480:1
position: 479480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:480079-480156:1:exon

position:480079:1
position: 480079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:480156:1
position: 480156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:481432-481580:1:exon

position:481432:1
position: 481432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:481580:1
position: 481580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:484228-484261:1:exon

position:484228:1
position: 484228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:484261:1
position: 484261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:484756-484848:1:exon

position:484756:1
position: 484756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:484848:1
position: 484848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:485228-485444:1:exon

position:485228:1
position: 485228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:485444:1
position: 485444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:485684-485761:1:exon

position:485684:1
position: 485684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:485761:1
position: 485761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:486161-489308:1:exon

position:486161:1
position: 486161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PTBP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PTBP1
product: polypyrimidine tract binding protein 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 134 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537644.1
SIO_010081: PTBP1
subclass of: SO_0000673
so part of: PTBP1
location: join(458735..458857,462953..462983,474197..474272,475229..475401,476370..476516,477822..477992,478802..478912,479306..479480,480079..480168,481432..481580,484228..484261,484756..484848,485228..485444,485684..485761,486161..489308)
location: region:458735-489308:1
so has part: feature:458735-458857:1:exon
so has part: feature:462953-462983:1:exon
so has part: feature:474197-474272:1:exon
so has part: feature:475229-475401:1:exon
so has part: feature:476370-476516:1:exon
so has part: feature:477822-477992:1:exon
so has part: feature:478802-478912:1:exon
so has part: feature:479306-479480:1:exon
so has part: feature:480079-480168:1:exon
so has part: feature:481432-481580:1:exon
so has part: feature:484228-484261:1:exon
so has part: feature:484756-484848:1:exon
so has part: feature:485228-485444:1:exon
so has part: feature:485684-485761:1:exon
so has part: feature:486161-489308:1:exon

position:458735:1
position: 458735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:458735-458857:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:462953-462983:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:474197-474272:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:475229-475401:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:476370-476516:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:477822-477992:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:478802-478912:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:479306-479480:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:480079-480168:1:exon

position:480168:1
position: 480168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:481432-481580:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:484228-484261:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:484756-484848:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:485228-485444:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:485684-485761:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:486161-489308:1:exon

PTBP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PTBP1
product: polypyrimidine tract binding protein 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 179 long SRA reads, 11 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537646.1
SIO_010081: PTBP1
subclass of: SO_0000673
so part of: PTBP1
location: join(458779..458857,474197..474272,475229..475401,476370..476516,477822..477992,478802..478912,479306..479480,480079..480156,481432..481580,484228..484261,484756..484848,485228..485444,485684..485761,486161..489308)
location: region:458779-489308:1
so has part: feature:458779-458857:1:exon
so has part: feature:474197-474272:1:exon
so has part: feature:475229-475401:1:exon
so has part: feature:476370-476516:1:exon
so has part: feature:477822-477992:1:exon
so has part: feature:478802-478912:1:exon
so has part: feature:479306-479480:1:exon
so has part: feature:480079-480156:1:exon
so has part: feature:481432-481580:1:exon
so has part: feature:484228-484261:1:exon
so has part: feature:484756-484848:1:exon
so has part: feature:485228-485444:1:exon
so has part: feature:485684-485761:1:exon
so has part: feature:486161-489308:1:exon

position:458779:1
position: 458779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:458779-458857:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:474197-474272:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:475229-475401:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:476370-476516:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:477822-477992:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:478802-478912:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:479306-479480:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:480079-480156:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:481432-481580:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:484228-484261:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:484756-484848:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:485228-485444:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:485684-485761:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:486161-489308:1:exon

PTBP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PTBP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: polypyrimidine tract-binding protein 1 isoform X1
translation: MDGIVQDITVGTKRGSDELFSTCVTNGPFIMSSNSSSAANGNDSKKFKGDSRSAGVPSRVIHVRKLPSDVTEAEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTTVTPVLRSQPIYIQFSNHKELKTDNSPNQARAQAALQAVNSVQSGNLALSASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPSLDQTMAAAFGAPGIISASPYAGAGFPPTFAIPQAAGTVLRLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLTGAGNSVLLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGQKLHGKPIRITLSKHQTVQLPREGQEDHGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSITEEDLKMLFSSNGGMVKGFKFFQKDRKMALIQMGSVEEAIQSLIDLHNHDLGENHHLRVSFSKSTI
SIO_010081: PTBP1
subclass of: SO_0000673
so part of: PTBP1
location: join(458850..458857,462953..462983,474197..474272,475229..475401,476370..476516,477822..477992,478802..478912,479306..479480,480079..480168,481432..481580,484228..484261,484756..484848,485228..485444,485684..485761,486161..486293)
location: region:458850-486293:1
so has part: feature:458850-458857:1:exon
so has part: feature:462953-462983:1:exon
so has part: feature:474197-474272:1:exon
so has part: feature:475229-475401:1:exon
so has part: feature:476370-476516:1:exon
so has part: feature:477822-477992:1:exon
so has part: feature:478802-478912:1:exon
so has part: feature:479306-479480:1:exon
so has part: feature:480079-480168:1:exon
so has part: feature:481432-481580:1:exon
so has part: feature:484228-484261:1:exon
so has part: feature:484756-484848:1:exon
so has part: feature:485228-485444:1:exon
so has part: feature:485684-485761:1:exon
so has part: feature:486161-486293:1:exon

XP_040393578.1
type: Protein
SIO_000068: ncbiprotein

position:458850:1
position: 458850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:486293:1
position: 486293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:458850-458857:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:462953-462983:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:474197-474272:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:475229-475401:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:476370-476516:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:477822-477992:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:478802-478912:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:479306-479480:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:480079-480168:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:481432-481580:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:484228-484261:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:484756-484848:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:485228-485444:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:485684-485761:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:486161-486293:1:exon

PTBP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PTBP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: polypyrimidine tract-binding protein 1 isoform X2
translation: MDGIVQDITVGTKRGSDELFSTCVTNGPFIMSSNSSSAANGNDSKKFKGDSRSAGVPSRVIHVRKLPSDVTEAEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTTVTPVLRSQPIYIQFSNHKELKTDNSPNQARAQAALQAVNSVQSGNLALSASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPSLDQTMAAAFGAPGIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLTGAGNSVLLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGQKLHGKPIRITLSKHQTVQLPREGQEDHGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSITEEDLKMLFSSNGGMVKGFKFFQKDRKMALIQMGSVEEAIQSLIDLHNHDLGENHHLRVSFSKSTI
SIO_010081: PTBP1
subclass of: SO_0000673
so part of: PTBP1
location: join(458850..458857,462953..462983,474197..474272,475229..475401,476370..476516,477822..477992,478802..478912,479306..479480,480079..480156,481432..481580,484228..484261,484756..484848,485228..485444,485684..485761,486161..486293)
location: region:458850-486293:1
so has part: feature:458850-458857:1:exon
so has part: feature:462953-462983:1:exon
so has part: feature:474197-474272:1:exon
so has part: feature:475229-475401:1:exon
so has part: feature:476370-476516:1:exon
so has part: feature:477822-477992:1:exon
so has part: feature:478802-478912:1:exon
so has part: feature:479306-479480:1:exon
so has part: feature:480079-480156:1:exon
so has part: feature:481432-481580:1:exon
so has part: feature:484228-484261:1:exon
so has part: feature:484756-484848:1:exon
so has part: feature:485228-485444:1:exon
so has part: feature:485684-485761:1:exon
so has part: feature:486161-486293:1:exon

XP_040393579.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:458850-458857:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:462953-462983:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:474197-474272:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:475229-475401:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:476370-476516:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:477822-477992:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:478802-478912:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:479306-479480:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:480079-480156:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:481432-481580:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:484228-484261:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:484756-484848:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:485228-485444:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:485684-485761:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:486161-486293:1:exon

PTBP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PTBP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: polypyrimidine tract-binding protein 1 isoform X3
translation: MSSNSSSAANGNDSKKFKGDSRSAGVPSRVIHVRKLPSDVTEAEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTTVTPVLRSQPIYIQFSNHKELKTDNSPNQARAQAALQAVNSVQSGNLALSASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPSLDQTMAAAFGAPGIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLTGAGNSVLLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGQKLHGKPIRITLSKHQTVQLPREGQEDHGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSITEEDLKMLFSSNGGMVKGFKFFQKDRKMALIQMGSVEEAIQSLIDLHNHDLGENHHLRVSFSKSTI
SIO_010081: PTBP1
subclass of: SO_0000673
so part of: PTBP1
location: join(474248..474272,475229..475401,476370..476516,477822..477992,478802..478912,479306..479480,480079..480156,481432..481580,484228..484261,484756..484848,485228..485444,485684..485761,486161..486293)
location: region:474248-486293:1
so has part: feature:474248-474272:1:exon
so has part: feature:475229-475401:1:exon
so has part: feature:476370-476516:1:exon
so has part: feature:477822-477992:1:exon
so has part: feature:478802-478912:1:exon
so has part: feature:479306-479480:1:exon
so has part: feature:480079-480156:1:exon
so has part: feature:481432-481580:1:exon
so has part: feature:484228-484261:1:exon
so has part: feature:484756-484848:1:exon
so has part: feature:485228-485444:1:exon
so has part: feature:485684-485761:1:exon
so has part: feature:486161-486293:1:exon

XP_040393580.1
type: Protein
SIO_000068: ncbiprotein

position:474248:1
position: 474248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:474248-474272:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:475229-475401:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:476370-476516:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:477822-477992:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:478802-478912:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:479306-479480:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:480079-480156:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:481432-481580:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:484228-484261:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:484756-484848:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:485228-485444:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:485684-485761:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:486161-486293:1:exon

PLPPR3
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: PLPPR3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(493343..497875)
location: region:493343-497875:-1
so has part: feature:493343-497875:-1:exon
subclass of: SO_0000010

121060143
type: Gene
SIO_000068: ncbigene

position:493343:-1
position: 493343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:497875:-1
position: 497875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:493343-497875:-1:exon

PLPPR3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: PLPPR3
product: phospholipid phosphatase related 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_040537643.1
SIO_010081: PLPPR3
subclass of: SO_0000673
so part of: PLPPR3
location: complement(join(493343..495463,495538..495711,495866..495923,496000..496195,496462..496591,496694..496879,497088..497185,497738..497875))
location: region:493343-497875:-1
so has part: feature:497738-497875:-1:exon
so has part: feature:497088-497185:-1:exon
so has part: feature:496694-496879:-1:exon
so has part: feature:496462-496591:-1:exon
so has part: feature:496000-496195:-1:exon
so has part: feature:495866-495923:-1:exon
so has part: feature:495538-495711:-1:exon
so has part: feature:493343-495463:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:497738-497875:-1:exon

position:497738:-1
position: 497738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:497088-497185:-1:exon

position:497088:-1
position: 497088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:497185:-1
position: 497185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:496694-496879:-1:exon

position:496694:-1
position: 496694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:496879:-1
position: 496879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:496462-496591:-1:exon

position:496462:-1
position: 496462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:496591:-1
position: 496591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:496000-496195:-1:exon

position:496000:-1
position: 496000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:496195:-1
position: 496195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:495866-495923:-1:exon

position:495866:-1
position: 495866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:495923:-1
position: 495923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:495538-495711:-1:exon

position:495538:-1
position: 495538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:495711:-1
position: 495711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:493343-495463:-1:exon

position:495463:-1
position: 495463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PLPPR3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: PLPPR3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phospholipid phosphatase-related protein type 3
translation: MISPKDKAKAPKDSMTLLPCFYFVELPIVASSIVTLYFLELTDLFKPAKVGFQCYDRALSMPYVETNEELIPLLMLLSLAFAAPAASIMVGEGIVYCLQSRLKGRAGAEGSINAGGCNFNSFLRRTVRFVGVHVFGLCATALVTDVIQLATGYHAPFFLTVCKPNYTLLGTPCDANPYITQDICSGTDKHAILSARKTFPSQHATLSAFAAVYVSMYFNSIISDSTKLLKPILVFAFAIAAGICGLTQITQYRSHPADVYVGFLIGSGIAAYLAYHAVGNFRAPTERAPAPAPAKDALRALTQRGHDSVYHQNKSVSTDELNPQTRLEEAARPVPREKNSLGSLKRASVDVDLLAPRSPMAKENMVTFSNTLPRVNTPSMDDHARRHMTIHVPVDASRSKQLITEWKQKSLEGRSMTLAEEAGALGRGAGDADEDVPPSLYPTVQARPAERAAMGPRVLIQPRPGASQLVHIPEESQAGAGGAAGSGAAVRAKWVMVAEKGGAQRVANPPRLMQVIAMSKQQSMVSVTPKHSETSSSSTSSDSSQYRSPSERDSSSIITIDAHAPHHPVVHLSAGNGPWEWKSAQKGPEGPDAYELGEMGKDFRGFRPAKSAGVSPGSSVSDIEQDEPRYGSLATINVVAGGGGERGDGPPEGLLGTASRESTLRRKPADKDGHTDSEADSYYRKMQASRRFKD
SIO_010081: PLPPR3
subclass of: SO_0000673
so part of: PLPPR3
location: complement(join(494198..495463,495538..495711,495866..495923,496000..496195,496462..496591,496694..496879,497088..497162))
location: region:494198-497162:-1
so has part: feature:497088-497162:-1:exon
so has part: feature:496694-496879:-1:exon
so has part: feature:496462-496591:-1:exon
so has part: feature:496000-496195:-1:exon
so has part: feature:495866-495923:-1:exon
so has part: feature:495538-495711:-1:exon
so has part: feature:494198-495463:-1:exon

XP_040393577.1
type: Protein
SIO_000068: ncbiprotein

position:494198:-1
position: 494198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:497162:-1
position: 497162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:497088-497162:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:496694-496879:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:496462-496591:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:496000-496195:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:495866-495923:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:495538-495711:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:494198-495463:-1:exon

CFD
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: CFD
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 499903..502337
location: region:499903-502337:1
so has part: feature:499903-502337:1:exon
subclass of: SO_0000010

121060146
type: Gene
SIO_000068: ncbigene

position:499903:1
position: 499903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:502337:1
position: 502337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:499903-502337:1:exon

CFD
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CFD
product: complement factor D
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 long SRA reads, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_040537648.1
SIO_010081: CFD
subclass of: SO_0000673
so part of: CFD
location: join(499903..500060,500468..500621,500858..501002,501357..501614,501844..502337)
location: region:499903-502337:1
so has part: feature:499903-500060:1:exon
so has part: feature:500468-500621:1:exon
so has part: feature:500858-501002:1:exon
so has part: feature:501357-501614:1:exon
so has part: feature:501844-502337:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:499903-500060:1:exon

position:500060:1
position: 500060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:500468-500621:1:exon

position:500468:1
position: 500468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:500621:1
position: 500621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:500858-501002:1:exon

position:500858:1
position: 500858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:501002:1
position: 501002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:501357-501614:1:exon

position:501357:1
position: 501357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:501614:1
position: 501614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:501844-502337:1:exon

position:501844:1
position: 501844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CFD
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CFD
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: complement factor D
translation: MGPCPAPVLVLTLLLLLGVVVNAQPRGRILGGYEAKPHLRPYMASLQLDGQHVCGGFLIAEQWVLSAAHCTEGTNGKLFQVLLGAHSLTEPEPHKHLYHVRAQIPHPGSNIHNNRDDLLLLQLEEKAELNAHVKVLPFQREDRDVEAGTVCEAAGWGTVTHSGRRPDKLQQVERPVISRDLCNHRTHHDHTITEKMMCTDSRKKDTCKGDSGGPLVCNGVAEGVVTAGSRVCGNYKKPAIYTRIAPYAAWIDGVMASAARDEAGDGAAR
SIO_010081: CFD
subclass of: SO_0000673
so part of: CFD
location: join(499994..500060,500468..500621,500858..501002,501357..501614,501844..502029)
location: region:499994-502029:1
so has part: feature:499994-500060:1:exon
so has part: feature:500468-500621:1:exon
so has part: feature:500858-501002:1:exon
so has part: feature:501357-501614:1:exon
so has part: feature:501844-502029:1:exon

XP_040393582.1
type: Protein
SIO_000068: ncbiprotein

position:499994:1
position: 499994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:502029:1
position: 502029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:499994-500060:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:500468-500621:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:500858-501002:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:501357-501614:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:501844-502029:1:exon

MED16
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: MED16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(504001..513447)
location: region:504001-513447:-1
so has part: feature:504001-513447:-1:exon
subclass of: SO_0000010

121060145
type: Gene
SIO_000068: ncbigene

position:504001:-1
position: 504001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:513447:-1
position: 513447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:504001-513447:-1:exon

MED16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: MED16
product: mediator complex subunit 16
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 long SRA reads, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537647.1
SIO_010081: MED16
subclass of: SO_0000673
so part of: MED16
location: complement(join(504001..504824,505925..506008,506387..506603,506859..507051,507241..507374,507589..507799,508222..508428,508705..508916,509049..509204,509846..509951,510851..511282,512154..512323,512479..512586,513204..513447))
location: region:504001-513447:-1
so has part: feature:513204-513447:-1:exon
so has part: feature:512479-512586:-1:exon
so has part: feature:512154-512323:-1:exon
so has part: feature:510851-511282:-1:exon
so has part: feature:509846-509951:-1:exon
so has part: feature:509049-509204:-1:exon
so has part: feature:508705-508916:-1:exon
so has part: feature:508222-508428:-1:exon
so has part: feature:507589-507799:-1:exon
so has part: feature:507241-507374:-1:exon
so has part: feature:506859-507051:-1:exon
so has part: feature:506387-506603:-1:exon
so has part: feature:505925-506008:-1:exon
so has part: feature:504001-504824:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:513204-513447:-1:exon

position:513204:-1
position: 513204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:512479-512586:-1:exon

position:512479:-1
position: 512479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:512586:-1
position: 512586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:512154-512323:-1:exon

position:512154:-1
position: 512154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:512323:-1
position: 512323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:510851-511282:-1:exon

position:510851:-1
position: 510851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:511282:-1
position: 511282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:509846-509951:-1:exon

position:509846:-1
position: 509846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:509951:-1
position: 509951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:509049-509204:-1:exon

position:509049:-1
position: 509049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:509204:-1
position: 509204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:508705-508916:-1:exon

position:508705:-1
position: 508705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:508916:-1
position: 508916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:508222-508428:-1:exon

position:508222:-1
position: 508222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:508428:-1
position: 508428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:507589-507799:-1:exon

position:507589:-1
position: 507589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:507799:-1
position: 507799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:507241-507374:-1:exon

position:507241:-1
position: 507241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:507374:-1
position: 507374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:506859-507051:-1:exon

position:506859:-1
position: 506859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:507051:-1
position: 507051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:506387-506603:-1:exon

position:506387:-1
position: 506387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:506603:-1
position: 506603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:505925-506008:-1:exon

position:505925:-1
position: 505925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:506008:-1
position: 506008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:504001-504824:-1:exon

position:504824:-1
position: 504824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MED16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: MED16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mediator of RNA polymerase II transcription subunit 16
translation: MDLAYVCEWERRPKSNHCPSIPLVCAWSCRNLIAFTTDLRNEEEKDLTHMVHIIDTEHPWDVYSVNSGHAEVITCLEWDQSGSRLLSADADGHIKCWSMTDHLANSWENTVGSMVEGDPVVALSWLHNGVKLALHVEKSGASNFGEKFSRVKFSPSLTLFGGKPMEGWIAVTISGLVTVSLLKPNGQVLTSTESLCRLRCRVALADVAFTGGGNIVVATSDGSSTSPVQFYKVCVSVVNEKCKIDTEILPSLFMRCTTDPARKDKYPAITHLKFLARDMSEQVLLCASNQNSSIVECWSLRKEGLPVNNIFQQISPVVGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVANDTKFFPGLGLALAFHDGSVHIVHRLSLQMMAVFYGSSSQRPVDEQTIKRQRTAGPLVHFKAMQLSWTSLALAGIDSHGKLSMLRISPSMGHVLDMNTSLRHLLFLLEYCMVTGYDWWDILLHVQPNMVQNLVEKLHEEYMRQSAALQQVLSTRIVAMKASLCKLSSSTIARVCDYHAKLFLIAISCTLKSLLRPHFLNTPDKSPGDRLTEICSKITDIDIDKVMINLKTEEFVLEMTTLQSLQQLIQWVGDFVLYLLASLPNQGSPVRPGHSFLRDGASLGMFRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWLCCREENHITEPDDTLIDECCLLPSQLLIPNIDWLPINDGIISKLQNKQLVRLQFGKAPGLVGHTVSSQFDAFVRAPGQPKIDHLRRLHLGAYPTEECKSCTRCGCVTMLKSPNKVTAVKQWEQRWIKNCLCGGLWRRMPLSYS
SIO_010081: MED16
subclass of: SO_0000673
so part of: MED16
location: complement(join(504698..504824,505925..506008,506387..506603,506859..507051,507241..507374,507589..507799,508222..508428,508705..508916,509049..509204,509846..509951,510851..511282,512154..512323,512479..512586,513204..513339))
location: region:504698-513339:-1
so has part: feature:513204-513339:-1:exon
so has part: feature:512479-512586:-1:exon
so has part: feature:512154-512323:-1:exon
so has part: feature:510851-511282:-1:exon
so has part: feature:509846-509951:-1:exon
so has part: feature:509049-509204:-1:exon
so has part: feature:508705-508916:-1:exon
so has part: feature:508222-508428:-1:exon
so has part: feature:507589-507799:-1:exon
so has part: feature:507241-507374:-1:exon
so has part: feature:506859-507051:-1:exon
so has part: feature:506387-506603:-1:exon
so has part: feature:505925-506008:-1:exon
so has part: feature:504698-504824:-1:exon

XP_040393581.1
type: Protein
SIO_000068: ncbiprotein

position:504698:-1
position: 504698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:513339:-1
position: 513339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:513204-513339:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:512479-512586:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:512154-512323:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:510851-511282:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:509846-509951:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:509049-509204:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:508705-508916:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:508222-508428:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:507589-507799:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:507241-507374:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:506859-507051:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:506387-506603:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:505925-506008:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:504698-504824:-1:exon

LOC121060321
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: LOC121060321
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 513782..513888
location: region:513782-513888:1
so has part: feature:513782-513888:1:exon
subclass of: SO_0000623

121060321
type: Gene
SIO_000068: ncbigene

position:513782:1
position: 513782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:513888:1
position: 513888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:513782-513888:1:exon

LOC121060321
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 8869
nc RNA class: snRNA
gene: LOC121060321
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_005814780.1
SIO_010081: LOC121060321
subclass of: SO_0000673
so part of: LOC121060321
location: 513782..513888
location: region:513782-513888:1
so has part: feature:513782-513888:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:513782-513888:1:exon

R3HDM4
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: R3HDM4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(514210..519102)
location: region:514210-519102:-1
so has part: feature:514210-519102:-1:exon
subclass of: SO_0000010

121060147
type: Gene
SIO_000068: ncbigene

position:514210:-1
position: 514210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:519102:-1
position: 519102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:514210-519102:-1:exon

R3HDM4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: R3HDM4
product: R3H domain containing 4, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537649.1
SIO_010081: R3HDM4
subclass of: SO_0000673
so part of: R3HDM4
location: complement(join(514210..514620,515159..515214,515438..515523,516578..517073,517656..517774,517850..518004,518958..519102))
location: region:514210-519102:-1
so has part: feature:518958-519102:-1:exon
so has part: feature:517850-518004:-1:exon
so has part: feature:517656-517774:-1:exon
so has part: feature:516578-517073:-1:exon
so has part: feature:515438-515523:-1:exon
so has part: feature:515159-515214:-1:exon
so has part: feature:514210-514620:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:518958-519102:-1:exon

position:518958:-1
position: 518958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:517850-518004:-1:exon

position:517850:-1
position: 517850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:518004:-1
position: 518004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:517656-517774:-1:exon

position:517656:-1
position: 517656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:517774:-1
position: 517774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:516578-517073:-1:exon

position:516578:-1
position: 516578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:517073:-1
position: 517073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:515438-515523:-1:exon

position:515438:-1
position: 515438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:515523:-1
position: 515523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:515159-515214:-1:exon

position:515159:-1
position: 515159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:515214:-1
position: 515214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:514210-514620:-1:exon

position:514620:-1
position: 514620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

R3HDM4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: R3HDM4
product: R3H domain containing 4, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_040537651.1
SIO_010081: R3HDM4
subclass of: SO_0000673
so part of: R3HDM4
location: complement(join(514210..514620,515159..515214,515438..515523,516950..517073,517656..517774,517850..518004,518958..519101))
location: region:514210-519101:-1
so has part: feature:518958-519101:-1:exon
so has part: feature:517850-518004:-1:exon
so has part: feature:517656-517774:-1:exon
so has part: feature:516950-517073:-1:exon
so has part: feature:515438-515523:-1:exon
so has part: feature:515159-515214:-1:exon
so has part: feature:514210-514620:-1:exon

position:519101:-1
position: 519101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:518958-519101:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:517850-518004:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:517656-517774:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:516950-517073:-1:exon

position:516950:-1
position: 516950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:515438-515523:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:515159-515214:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:514210-514620:-1:exon

R3HDM4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: R3HDM4
product: R3H domain containing 4, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537652.1
SIO_010081: R3HDM4
subclass of: SO_0000673
so part of: R3HDM4
location: complement(join(514210..514620,515159..515214,515438..515523,516578..516663,516950..517073,517656..517774,517850..518004,518958..519100))
location: region:514210-519100:-1
so has part: feature:518958-519100:-1:exon
so has part: feature:517850-518004:-1:exon
so has part: feature:517656-517774:-1:exon
so has part: feature:516950-517073:-1:exon
so has part: feature:516578-516663:-1:exon
so has part: feature:515438-515523:-1:exon
so has part: feature:515159-515214:-1:exon
so has part: feature:514210-514620:-1:exon

position:519100:-1
position: 519100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:518958-519100:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:517850-518004:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:517656-517774:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:516950-517073:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:516578-516663:-1:exon

position:516663:-1
position: 516663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:515438-515523:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:515159-515214:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:514210-514620:-1:exon

R3HDM4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: R3HDM4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: R3H domain-containing protein 4 isoform X2
translation: MVLLPGGAAGRGPAEPLPRIEDCLPPLESSPSKRFSPSKRKQYYINKAIRNSDLIPKAKGRKSLQRLENTRYLMTLLERDECGSDEAELAHAATPSIFAEACNNETYVEIWNDFMNRSGEEQERVLLYLEEEARKKHERKLPVKNKEKWKGDAGGPGGGAAGILLSHPTLRLHGADGQQLRATPAPRTLPVHGPRVCQFGHRRQAPDESEQQAPRLPAPPAPALRLPGPDELMAGAGLPPARRRSLRSPAPGPRSVCPPRGRAPGPCPRLYL
SIO_010081: R3HDM4
subclass of: SO_0000673
so part of: R3HDM4
location: complement(join(514395..514620,515159..515214,515438..515523,516950..517073,517656..517774,517850..518004,518958..519010))
location: region:514395-519010:-1
so has part: feature:518958-519010:-1:exon
so has part: feature:517850-518004:-1:exon
so has part: feature:517656-517774:-1:exon
so has part: feature:516950-517073:-1:exon
so has part: feature:515438-515523:-1:exon
so has part: feature:515159-515214:-1:exon
so has part: feature:514395-514620:-1:exon

XP_040393585.1
type: Protein
SIO_000068: ncbiprotein

position:514395:-1
position: 514395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:519010:-1
position: 519010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:518958-519010:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:517850-518004:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:517656-517774:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:516950-517073:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:515438-515523:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:515159-515214:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:514395-514620:-1:exon

R3HDM4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: R3HDM4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: R3H domain-containing protein 4 isoform X1
translation: MVLLPGGAAGRGPAEPLPRIEDCLPPLESSPSKRFSPSKRKQYYINKAIRNSDLIPKAKGRKSLQRLENTRYLMTLLERDECGSDEAELAHAATPSIFAEACNNETYVEIWNDFMNRSGEEQERVLLYLEEEARKKHERKLPVKNKEKWKGAGWESLSLPSLACALGRVLFPEGRIPLPAAVTVLRSPLGCCWEGSGPADPTVDWGELMAGWQWLWWPAGSWGVSGTSAGPQTPSEPLLSSLRGRRAPCLHAQGVLPAHQPPPALHPEAGQDPHGDAGGPGGGAAGILLSHPTLRLHGADGQQLRATPAPRTLPVHGPRVCQFGHRRQAPDESEQQAPRLPAPPAPALRLPGPDELMAGAGLPPARRRSLRSPAPGPRSVCPPRGRAPGPCPRLYL
SIO_010081: R3HDM4
subclass of: SO_0000673
so part of: R3HDM4
location: complement(join(514395..514620,515159..515214,515438..515523,516578..517073,517656..517774,517850..518004,518958..519010))
location: region:514395-519010:-1
so has part: feature:518958-519010:-1:exon
so has part: feature:517850-518004:-1:exon
so has part: feature:517656-517774:-1:exon
so has part: feature:516578-517073:-1:exon
so has part: feature:515438-515523:-1:exon
so has part: feature:515159-515214:-1:exon
so has part: feature:514395-514620:-1:exon

XP_040393583.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:518958-519010:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:517850-518004:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:517656-517774:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:516578-517073:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:515438-515523:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:515159-515214:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:514395-514620:-1:exon

R3HDM4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: R3HDM4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: R3H domain-containing protein 4 isoform X3
translation: MVLLPGGAAGRGPAEPLPRIEDCLPPLESSPSKRFSPSKRKQYYINKAIRNSDLIPKAKGRKSLQRLENTRYLMTLLERDECGSDEAELAHAATPSIFAEACNNETYVEIWNDFMNRSGEEQERVLLYLEEEARKKHERKLPVKNKEKWKEHPAYTPKECFQRISRRLRSTLKRGRIPMGTLEGLEEELLAFFSVTPHSVYTALMDNSFERLLLHALCQYMDLVSASSDIEGKRQMKVSNKHRVFLPPQLLLSDYLGQMS
SIO_010081: R3HDM4
subclass of: SO_0000673
so part of: R3HDM4
location: complement(join(514517..514620,515159..515214,515438..515523,516578..516663,516950..517073,517656..517774,517850..518004,518958..519010))
location: region:514517-519010:-1
so has part: feature:518958-519010:-1:exon
so has part: feature:517850-518004:-1:exon
so has part: feature:517656-517774:-1:exon
so has part: feature:516950-517073:-1:exon
so has part: feature:516578-516663:-1:exon
so has part: feature:515438-515523:-1:exon
so has part: feature:515159-515214:-1:exon
so has part: feature:514517-514620:-1:exon

XP_040393586.1
type: Protein
SIO_000068: ncbiprotein

position:514517:-1
position: 514517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:518958-519010:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:517850-518004:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:517656-517774:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:516950-517073:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:516578-516663:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:515438-515523:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:515159-515214:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:514517-514620:-1:exon

ARID3A
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: ARID3A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 521583..547343
location: region:521583-547343:1
so has part: feature:521583-547343:1:exon
subclass of: SO_0000010

121060155
type: Gene
SIO_000068: ncbigene

position:521583:1
position: 521583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:547343:1
position: 547343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:521583-547343:1:exon

ARID3A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: ARID3A
product: AT-rich interaction domain 3A, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_040537673.1
SIO_010081: ARID3A
subclass of: SO_0000673
so part of: ARID3A
location: join(521583..522110,522783..523125,541030..541102,542616..542799,542882..543129,543709..543948,544042..544131,544250..547343)
location: region:521583-547343:1
so has part: feature:521583-522110:1:exon
so has part: feature:522783-523125:1:exon
so has part: feature:541030-541102:1:exon
so has part: feature:542616-542799:1:exon
so has part: feature:542882-543129:1:exon
so has part: feature:543709-543948:1:exon
so has part: feature:544042-544131:1:exon
so has part: feature:544250-547343:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:521583-522110:1:exon

position:522110:1
position: 522110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:522783-523125:1:exon

position:522783:1
position: 522783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:523125:1
position: 523125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:541030-541102:1:exon

position:541030:1
position: 541030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:541102:1
position: 541102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:542616-542799:1:exon

position:542616:1
position: 542616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:542799:1
position: 542799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:542882-543129:1:exon

position:542882:1
position: 542882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:543129:1
position: 543129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:543709-543948:1:exon

position:543709:1
position: 543709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:543948:1
position: 543948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:544042-544131:1:exon

position:544042:1
position: 544042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:544131:1
position: 544131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:544250-547343:1:exon

position:544250:1
position: 544250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ARID3A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: ARID3A
product: AT-rich interaction domain 3A, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_040537672.1
SIO_010081: ARID3A
subclass of: SO_0000673
so part of: ARID3A
location: join(521584..522110,522783..523125,541030..541102,542616..542799,542882..543129,543652..543948,544042..544131,544250..547343)
location: region:521584-547343:1
so has part: feature:521584-522110:1:exon
so has part: feature:522783-523125:1:exon
so has part: feature:541030-541102:1:exon
so has part: feature:542616-542799:1:exon
so has part: feature:542882-543129:1:exon
so has part: feature:543652-543948:1:exon
so has part: feature:544042-544131:1:exon
so has part: feature:544250-547343:1:exon

position:521584:1
position: 521584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:521584-522110:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:522783-523125:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:541030-541102:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:542616-542799:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:542882-543129:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:543652-543948:1:exon

position:543652:1
position: 543652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:544042-544131:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:544250-547343:1:exon

ARID3A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: ARID3A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: AT-rich interactive domain-containing protein 3A isoform X1
translation: MKLQAVMENLQRQQRARLQQALEARQQEQQQQQQRSTPPPAQPPPAPGQTPARGRGPDPAPAPSEEGAEPENAHIQRAQMAALAAMRAAAAGLSHSSSPGLSEESQASEEEERGEEEEEEEDGGYQQEMGSEEEEDLKGKWDEEDFEEDLGEEEEEEEEEEEEEEEEEEEDYEEEEDMGEEGLSSAEAVRTGPGSLLLRKLPAPQHCRGEAQRPPGGQERLPAGLGPQGHAQLPQPAPDHGDWTYEEQFKQLYELDGDPRRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYMLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRRQGFGSSLFTYSPGGTHGLLSSPKLPVPALGLASATNGGSIAPVQKIKKEEDAPIPISMPSRLPVSLAGHPVVAAQAAAVQVAAAAQAVALEQLREKLESGEPPEKKMALVTDEQQRLMQRALQQNLLAMTAQLPMSIRINSQGTRSPENRQDSSGSLSSNGTNSISMSVEINGIVYTGVLFAQTPGPSSSSSSSSSSAYSKGNGSNGGGSRSSGNSGGGAGGGGGSVPPAAPAALAVPPPSSTSNNASP
SIO_010081: ARID3A
subclass of: SO_0000673
so part of: ARID3A
location: join(521701..522110,522783..523125,541030..541102,542616..542799,542882..543129,543652..543948,544042..544131,544250..544467)
location: region:521701-544467:1
so has part: feature:521701-522110:1:exon
so has part: feature:522783-523125:1:exon
so has part: feature:541030-541102:1:exon
so has part: feature:542616-542799:1:exon
so has part: feature:542882-543129:1:exon
so has part: feature:543652-543948:1:exon
so has part: feature:544042-544131:1:exon
so has part: feature:544250-544467:1:exon

XP_040393606.1
type: Protein
SIO_000068: ncbiprotein

position:521701:1
position: 521701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:544467:1
position: 544467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:521701-522110:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:522783-523125:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:541030-541102:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:542616-542799:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:542882-543129:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:543652-543948:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:544042-544131:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:544250-544467:1:exon

ARID3A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: ARID3A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: AT-rich interactive domain-containing protein 3A isoform X2
translation: MKLQAVMENLQRQQRARLQQALEARQQEQQQQQQRSTPPPAQPPPAPGQTPARGRGPDPAPAPSEEGAEPENAHIQRAQMAALAAMRAAAAGLSHSSSPGLSEESQASEEEERGEEEEEEEDGGYQQEMGSEEEEDLKGKWDEEDFEEDLGEEEEEEEEEEEEEEEEEEEDYEEEEDMGEEGLSSAEAVRTGPGSLLLRKLPAPQHCRGEAQRPPGGQERLPAGLGPQGHAQLPQPAPDHGDWTYEEQFKQLYELDGDPRRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYMLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRRQGFGSSLFTYSPGGTHGLLSSPKLPVPALGLASATNGGSIAPVQKIKKGHPVVAAQAAAVQVAAAAQAVALEQLREKLESGEPPEKKMALVTDEQQRLMQRALQQNLLAMTAQLPMSIRINSQGTRSPENRQDSSGSLSSNGTNSISMSVEINGIVYTGVLFAQTPGPSSSSSSSSSSAYSKGNGSNGGGSRSSGNSGGGAGGGGGSVPPAAPAALAVPPPSSTSNNASP
SIO_010081: ARID3A
subclass of: SO_0000673
so part of: ARID3A
location: join(521701..522110,522783..523125,541030..541102,542616..542799,542882..543129,543709..543948,544042..544131,544250..544467)
location: region:521701-544467:1
so has part: feature:521701-522110:1:exon
so has part: feature:522783-523125:1:exon
so has part: feature:541030-541102:1:exon
so has part: feature:542616-542799:1:exon
so has part: feature:542882-543129:1:exon
so has part: feature:543709-543948:1:exon
so has part: feature:544042-544131:1:exon
so has part: feature:544250-544467:1:exon

XP_040393607.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:521701-522110:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:522783-523125:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:541030-541102:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:542616-542799:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:542882-543129:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:543709-543948:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:544042-544131:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:544250-544467:1:exon

WDR18
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: WDR18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 548235..560617
location: region:548235-560617:1
so has part: feature:548235-560617:1:exon
subclass of: SO_0000010

121060156
type: Gene
SIO_000068: ncbigene

position:548235:1
position: 548235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:560617:1
position: 560617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:548235-560617:1:exon

WDR18
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: WDR18
product: WD repeat domain 18
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537675.1
SIO_010081: WDR18
subclass of: SO_0000673
so part of: WDR18
location: join(548235..548491,549989..550099,552345..552478,553030..553171,553847..553990,554188..554252,554371..554495,557549..557715,559239..559307,559597..560617)
location: region:548235-560617:1
so has part: feature:548235-548491:1:exon
so has part: feature:549989-550099:1:exon
so has part: feature:552345-552478:1:exon
so has part: feature:553030-553171:1:exon
so has part: feature:553847-553990:1:exon
so has part: feature:554188-554252:1:exon
so has part: feature:554371-554495:1:exon
so has part: feature:557549-557715:1:exon
so has part: feature:559239-559307:1:exon
so has part: feature:559597-560617:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:548235-548491:1:exon

position:548491:1
position: 548491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:549989-550099:1:exon

position:549989:1
position: 549989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:550099:1
position: 550099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:552345-552478:1:exon

position:552345:1
position: 552345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:552478:1
position: 552478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:553030-553171:1:exon

position:553030:1
position: 553030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:553171:1
position: 553171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:553847-553990:1:exon

position:553847:1
position: 553847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:553990:1
position: 553990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:554188-554252:1:exon

position:554188:1
position: 554188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:554252:1
position: 554252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:554371-554495:1:exon

position:554371:1
position: 554371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:554495:1
position: 554495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:557549-557715:1:exon

position:557549:1
position: 557549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:557715:1
position: 557715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:559239-559307:1:exon

position:559239:1
position: 559239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:559307:1
position: 559307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:559597-560617:1:exon

position:559597:1
position: 559597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

WDR18
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: WDR18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: WD repeat-containing protein 18
translation: MAAPMEVALVSDAAGPLCNCSVWELHSGSALPGYRGGNSGPRGLALLGGEHLLGAQLGKSYINVWELQRKDQLQQKIICPGPVTCLTASPNGLYILAGVAESIYLWEVSNGNLLAILNRHYQDLTCLCFTDDSSHFLSGAKDCLALVWNLYSVLQAEPSQIPDPRHVWSRHSLPITDMCCGFGGPLARAATASLDQTAKLWEVSSGELLLSVLFDVGIMAVTLDLSEYHMFCGGMDGSIFQVDLCAWPVQRDRTFQTERENGKIFKGHRNQVTCLSVSTDGSLLLSGSHDETVRLWDIQSKQCLKTMNHKGPVTNAFIVLAPANMFNPDGKPSVPLPKFSKHLYGTESNDEQGSEGVTLRLGLHQQDSGESYLEKGEKMYSQMCSTREKNLVGDQEHLTIQVSELEEEVSTLRKINKNLFDFSARIITKPAK
SIO_010081: WDR18
subclass of: SO_0000673
so part of: WDR18
location: join(548282..548491,549989..550099,552345..552478,553030..553171,553847..553990,554188..554252,554371..554495,557549..557715,559239..559307,559597..559728)
location: region:548282-559728:1
so has part: feature:548282-548491:1:exon
so has part: feature:549989-550099:1:exon
so has part: feature:552345-552478:1:exon
so has part: feature:553030-553171:1:exon
so has part: feature:553847-553990:1:exon
so has part: feature:554188-554252:1:exon
so has part: feature:554371-554495:1:exon
so has part: feature:557549-557715:1:exon
so has part: feature:559239-559307:1:exon
so has part: feature:559597-559728:1:exon

XP_040393609.1
type: Protein
SIO_000068: ncbiprotein

position:548282:1
position: 548282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:559728:1
position: 559728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:548282-548491:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:549989-550099:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:552345-552478:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:553030-553171:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:553847-553990:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:554188-554252:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:554371-554495:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:557549-557715:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:559239-559307:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:559597-559728:1:exon

GRIN3B
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: GRIN3B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 562243..568426
location: region:562243-568426:1
so has part: feature:562243-568426:1:exon
subclass of: SO_0000010

121060151
type: Gene
SIO_000068: ncbigene

position:562243:1
position: 562243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:568426:1
position: 568426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:562243-568426:1:exon

GRIN3B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: GRIN3B
product: glutamate ionotropic receptor NMDA type subunit 3B
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_040537666.1
SIO_010081: GRIN3B
subclass of: SO_0000673
so part of: GRIN3B
location: join(562243..562672,563945..564543,564949..565999,566103..566248,566371..566486,566645..566796,566877..567041,567159..567226,567345..567638,568100..568426)
location: region:562243-568426:1
so has part: feature:562243-562672:1:exon
so has part: feature:563945-564543:1:exon
so has part: feature:564949-565999:1:exon
so has part: feature:566103-566248:1:exon
so has part: feature:566371-566486:1:exon
so has part: feature:566645-566796:1:exon
so has part: feature:566877-567041:1:exon
so has part: feature:567159-567226:1:exon
so has part: feature:567345-567638:1:exon
so has part: feature:568100-568426:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:562243-562672:1:exon

position:562672:1
position: 562672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:563945-564543:1:exon

position:563945:1
position: 563945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:564543:1
position: 564543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:564949-565999:1:exon

position:564949:1
position: 564949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:565999:1
position: 565999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:566103-566248:1:exon

position:566103:1
position: 566103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:566248:1
position: 566248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:566371-566486:1:exon

position:566371:1
position: 566371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:566486:1
position: 566486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:566645-566796:1:exon

position:566645:1
position: 566645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:566796:1
position: 566796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:566877-567041:1:exon

position:566877:1
position: 566877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:567041:1
position: 567041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:567159-567226:1:exon

position:567159:1
position: 567159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:567226:1
position: 567226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:567345-567638:1:exon

position:567345:1
position: 567345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:567638:1
position: 567638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:568100-568426:1:exon

position:568100:1
position: 568100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GRIN3B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: GRIN3B
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 3B
translation: MAGLGALWLLAAALGAAGGHPQPCRVPARAGPAVRLGALLPPAAPGRVRAALAGAAAGPGGPGGAALPPNRSLELVAGAPAARDPGSLARWLCGALGGRGVAAVLAVPRSRRELLQLDFLAAALRVPFVSVLDTRGPLPFRPQSPFHFHMDRQSSLETLVEVLASILQANEWHETSLVLCHPWDVSGFLGLWARRTQLLLRAVLDLGYLDESRASRYLRQRGERLKALSSPVLVLGCDLRRARLLFRVVEQSGLLLQEFHWILGSPLRAGELQTEGLPLGLLAFGEVGRPPLEPFVQDAVELVSRAIDSAAAVRPDLALVPTTVNCDDRLREGAESSGRFLSRFMSNTSFHGRTGHVQVQNGTRVHTEHQYRVWSLLRDSLGQPTWVTMGAWRHGKLELEEGAWQSHLQRKSLAEGAGGARAKLRVVTLVEHPFVFTREVDEDGSCPAGQLCLDPGTNDSAVLDALFEELGAGNGSVPREYKKCCYGYCIDLLEKLAEDVSFDFELYIVGDGKYGAWKNGRWTGLVGDLLSGTAHMAVTSFSINSARSKVIDFTSPFFSTSLGILVRTKDTASPIGAFMWPLHWTMWVGIFVALHMTALFLTLYEWKSPYGMTPHGRNRMKIFSYSSALNLCYAILFGRTVSSKTPKCCTGRFLMNLWAIFCLLVLSSYTANLAAVMVGEKTFEELSGIHDPKLHHPSQGFRFGTVWESSAEEYIKKSFPEMHEYMRRYNVPTTPTGVTMLKTEPPKLNAFIMDKSLLDYEVSIDSDCKLLTVGKPFAIEGYGIGLPQNSPLTSNLSEFISRYKSAGFIDLLHDKWYKMVPCGKRVFAVTETLQMGIYHFSGLFVLLCIGLSGSLLTSLGEHVFYRLVLPRIKRKKKFNYWLHTSQKIHRALNTGVEEQKGQKLSLAQRCDPQQSPGVQPWPRLRQEGRRVRFQLDAATPEGEGTPGPRGNGPVQGAGAELRELEEKIEAMREQLRAALVRRSELVAAMGTARSSRAPASEQPQEERQAPAPPQESSAWGCRRAPEQEHEAAPGAAGGSRSRAEPQPQQQSLGGERVAPVRAPSSARSPPSEAAEEMK
SIO_010081: GRIN3B
subclass of: SO_0000673
so part of: GRIN3B
location: join(562243..562672,563945..564543,564949..565999,566103..566248,566371..566486,566645..566796,566877..567041,567159..567226,567345..567638,568100..568316)
location: region:562243-568316:1
so has part: feature:562243-562672:1:exon
so has part: feature:563945-564543:1:exon
so has part: feature:564949-565999:1:exon
so has part: feature:566103-566248:1:exon
so has part: feature:566371-566486:1:exon
so has part: feature:566645-566796:1:exon
so has part: feature:566877-567041:1:exon
so has part: feature:567159-567226:1:exon
so has part: feature:567345-567638:1:exon
so has part: feature:568100-568316:1:exon

XP_040393600.1
type: Protein
SIO_000068: ncbiprotein

position:568316:1
position: 568316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:562243-562672:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:563945-564543:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:564949-565999:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:566103-566248:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:566371-566486:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:566645-566796:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:566877-567041:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:567159-567226:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:567345-567638:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:568100-568316:1:exon

TMEM259
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: TMEM259
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(569405..583444)
location: region:569405-583444:-1
so has part: feature:569405-583444:-1:exon
subclass of: SO_0000010

121060154
type: Gene
SIO_000068: ncbigene

position:569405:-1
position: 569405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:583444:-1
position: 583444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:569405-583444:-1:exon

TMEM259
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: TMEM259
product: transmembrane protein 259, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_040537671.1
SIO_010081: TMEM259
subclass of: SO_0000673
so part of: TMEM259
location: complement(join(569405..571358,572218..572317,572735..572867,573413..573496,573815..573872,574806..574906,575242..575364,576760..576870,579114..579228,579544..579810,583181..583444))
location: region:569405-583444:-1
so has part: feature:583181-583444:-1:exon
so has part: feature:579544-579810:-1:exon
so has part: feature:579114-579228:-1:exon
so has part: feature:576760-576870:-1:exon
so has part: feature:575242-575364:-1:exon
so has part: feature:574806-574906:-1:exon
so has part: feature:573815-573872:-1:exon
so has part: feature:573413-573496:-1:exon
so has part: feature:572735-572867:-1:exon
so has part: feature:572218-572317:-1:exon
so has part: feature:569405-571358:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:583181-583444:-1:exon

position:583181:-1
position: 583181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:579544-579810:-1:exon

position:579544:-1
position: 579544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:579810:-1
position: 579810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:579114-579228:-1:exon

position:579114:-1
position: 579114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:579228:-1
position: 579228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:576760-576870:-1:exon

position:576760:-1
position: 576760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:576870:-1
position: 576870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:575242-575364:-1:exon

position:575242:-1
position: 575242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:575364:-1
position: 575364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:574806-574906:-1:exon

position:574806:-1
position: 574806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:574906:-1
position: 574906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:573815-573872:-1:exon

position:573815:-1
position: 573815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:573872:-1
position: 573872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:573413-573496:-1:exon

position:573413:-1
position: 573413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:573496:-1
position: 573496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:572735-572867:-1:exon

position:572735:-1
position: 572735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:572867:-1
position: 572867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:572218-572317:-1:exon

position:572218:-1
position: 572218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:572317:-1
position: 572317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:569405-571358:-1:exon

position:571358:-1
position: 571358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TMEM259
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: TMEM259
product: transmembrane protein 259, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_040537670.1
SIO_010081: TMEM259
subclass of: SO_0000673
so part of: TMEM259
location: complement(join(569405..571358,572218..572317,572735..572867,573413..573496,573815..573872,574806..574906,575242..575364,576760..576870,579060..579228,579544..579810,583181..583444))
location: region:569405-583444:-1
so has part: feature:583181-583444:-1:exon
so has part: feature:579544-579810:-1:exon
so has part: feature:579060-579228:-1:exon
so has part: feature:576760-576870:-1:exon
so has part: feature:575242-575364:-1:exon
so has part: feature:574806-574906:-1:exon
so has part: feature:573815-573872:-1:exon
so has part: feature:573413-573496:-1:exon
so has part: feature:572735-572867:-1:exon
so has part: feature:572218-572317:-1:exon
so has part: feature:569405-571358:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:583181-583444:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:579544-579810:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:579060-579228:-1:exon

position:579060:-1
position: 579060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:576760-576870:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:575242-575364:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:574806-574906:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:573815-573872:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:573413-573496:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:572735-572867:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:572218-572317:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:569405-571358:-1:exon

TMEM259
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: TMEM259
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: membralin isoform X2
translation: MSENNQPHAAHQHPATHGGAAGGNGRGVRNPNGNQNPLINVRDRLFHALFFKMAVTYARLFPPAFRRVFEFFVLLKALFVLFILAYIHIAFSRSPINCLEHVRDKWPRDGILRVEIQRNSSRAPIFLQFCGAEKFPGMVAEPTAEEEEEEEEEMTVDMFENSSVKFELDIEPKVFLKPSRMSSTEALGHNESQEFSFSEAATKVWPQEEYIVEYSLEYGFLRLSQSTRQRLSIPVMVVTLDPTRDQCFGDRFSRLLLDEFLGYDDILMSSVKALAENEENKGFLRNVVSGEHYRFVSMWMARTSYLAAFVIMVIFTLSVSMLLRYSHHQIFVFIVDLLQMLEMNMTIAFPAAPLLTVILALVGMEAIMSEFFNDTTTAFYIILIVWLADQYDAICCHTNTSKRHWLRFFYLYHFAFYAYHYRFNGQYSSLALVTSWLFIQHSMIYFFHHYELPAILQQIRIQEMLLQNQQVGQGTQTTLQDNLNNNTTAAPVEVGSRRPHLAAGPSGEGSGPAVLTPSEASSVIAAATAASVGSDLNWVAETAAIVTEASFLSDLSSTLLEPNVVHEAMANGSPQDAAASSLVARIRVSSDHPETAVGSITIEVTSTAVVAAADVPPATEAAPPSLAQEDGASVPSPSPPEQTEAARGSDSQAKPGSKNCAADSGVAETPPASGENTDQDKRSGRALGDRGESSPCPAPADSTASSGPCSEPDSRSLS
SIO_010081: TMEM259
subclass of: SO_0000673
so part of: TMEM259
location: complement(join(570522..571358,572218..572317,572735..572867,573413..573496,573815..573872,574806..574906,575242..575364,576760..576870,579114..579228,579544..579810,583181..583408))
location: region:570522-583408:-1
so has part: feature:583181-583408:-1:exon
so has part: feature:579544-579810:-1:exon
so has part: feature:579114-579228:-1:exon
so has part: feature:576760-576870:-1:exon
so has part: feature:575242-575364:-1:exon
so has part: feature:574806-574906:-1:exon
so has part: feature:573815-573872:-1:exon
so has part: feature:573413-573496:-1:exon
so has part: feature:572735-572867:-1:exon
so has part: feature:572218-572317:-1:exon
so has part: feature:570522-571358:-1:exon

XP_040393605.1
type: Protein
SIO_000068: ncbiprotein

position:570522:-1
position: 570522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:583408:-1
position: 583408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:583181-583408:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:579544-579810:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:579114-579228:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:576760-576870:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:575242-575364:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:574806-574906:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:573815-573872:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:573413-573496:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:572735-572867:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:572218-572317:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:570522-571358:-1:exon

TMEM259
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: TMEM259
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: membralin isoform X1
translation: MSENNQPHAAHQHPATHGGAAGGNGRGVRNPNGNQNPLINVRDRLFHALFFKMAVTYARLFPPAFRRVFEFFVLLKALFVLFILAYIHIAFSRSPINCLEHVRDKWPRDGILRVEIQRNSSRAPIFLQFCGAEKFPGMVAEPTAEEEEEEEEEMTVDMFENSSVKFELDIEPKVFLKPSRMSSTEALGHNESQEFSFSEAATKGMQPLRETVSEFEMLARAVWPQEEYIVEYSLEYGFLRLSQSTRQRLSIPVMVVTLDPTRDQCFGDRFSRLLLDEFLGYDDILMSSVKALAENEENKGFLRNVVSGEHYRFVSMWMARTSYLAAFVIMVIFTLSVSMLLRYSHHQIFVFIVDLLQMLEMNMTIAFPAAPLLTVILALVGMEAIMSEFFNDTTTAFYIILIVWLADQYDAICCHTNTSKRHWLRFFYLYHFAFYAYHYRFNGQYSSLALVTSWLFIQHSMIYFFHHYELPAILQQIRIQEMLLQNQQVGQGTQTTLQDNLNNNTTAAPVEVGSRRPHLAAGPSGEGSGPAVLTPSEASSVIAAATAASVGSDLNWVAETAAIVTEASFLSDLSSTLLEPNVVHEAMANGSPQDAAASSLVARIRVSSDHPETAVGSITIEVTSTAVVAAADVPPATEAAPPSLAQEDGASVPSPSPPEQTEAARGSDSQAKPGSKNCAADSGVAETPPASGENTDQDKRSGRALGDRGESSPCPAPADSTASSGPCSEPDSRSLS
SIO_010081: TMEM259
subclass of: SO_0000673
so part of: TMEM259
location: complement(join(570522..571358,572218..572317,572735..572867,573413..573496,573815..573872,574806..574906,575242..575364,576760..576870,579060..579228,579544..579810,583181..583408))
location: region:570522-583408:-1
so has part: feature:583181-583408:-1:exon
so has part: feature:579544-579810:-1:exon
so has part: feature:579060-579228:-1:exon
so has part: feature:576760-576870:-1:exon
so has part: feature:575242-575364:-1:exon
so has part: feature:574806-574906:-1:exon
so has part: feature:573815-573872:-1:exon
so has part: feature:573413-573496:-1:exon
so has part: feature:572735-572867:-1:exon
so has part: feature:572218-572317:-1:exon
so has part: feature:570522-571358:-1:exon

XP_040393604.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:583181-583408:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:579544-579810:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:579060-579228:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:576760-576870:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:575242-575364:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:574806-574906:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:573815-573872:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:573413-573496:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:572735-572867:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:572218-572317:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:570522-571358:-1:exon

LOC121060322
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: LOC121060322
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 583996..584102
location: region:583996-584102:1
so has part: feature:583996-584102:1:exon
subclass of: SO_0000623

121060322
type: Gene
SIO_000068: ncbigene

position:583996:1
position: 583996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:584102:1
position: 584102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:583996-584102:1:exon

LOC121060322
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 8869
nc RNA class: snRNA
gene: LOC121060322
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_005814781.1
SIO_010081: LOC121060322
subclass of: SO_0000673
so part of: LOC121060322
location: 583996..584102
location: region:583996-584102:1
so has part: feature:583996-584102:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:583996-584102:1:exon

ABCA7
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: ABCA7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(584160..597275)
location: region:584160-597275:-1
so has part: feature:584160-597275:-1:exon
subclass of: SO_0000010

121060148
type: Gene
SIO_000068: ncbigene

position:584160:-1
position: 584160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:597275:-1
position: 597275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:584160-597275:-1:exon

ABCA7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: ABCA7
product: ATP binding cassette subfamily A member 7, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 16 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_040537653.1
SIO_010081: ABCA7
subclass of: SO_0000673
so part of: ABCA7
location: complement(join(584160..584499,584569..584812,584890..584982,585062..585165,585247..585381,585451..585592,585812..585918,585986..586048,586192..586312,586385..586514,586622..586745,586828..586972,587113..587228,587327..587504,587571..587740,587922..587996,588084..588189,588282..588314,588621..588715,588794..588989,589102..589200,589271..589395,589474..589625,590064..590141,590326..590374,590503..590705,590869..590941,591074..591276,591461..591598,591683..591822,591895..592026,592217..592388,592521..592637,592728..592932,593061..593282,593374..593596,593710..593886,593972..594180,594248..594427,594512..594628,594697..594836,594934..595159,595244..595324,595411..595605,595675..595924,596005..596146,596258..596351,596444..596519,596925..597275))
location: region:584160-597275:-1
so has part: feature:596925-597275:-1:exon
so has part: feature:596444-596519:-1:exon
so has part: feature:596258-596351:-1:exon
so has part: feature:596005-596146:-1:exon
so has part: feature:595675-595924:-1:exon
so has part: feature:595411-595605:-1:exon
so has part: feature:595244-595324:-1:exon
so has part: feature:594934-595159:-1:exon
so has part: feature:594697-594836:-1:exon
so has part: feature:594512-594628:-1:exon
so has part: feature:594248-594427:-1:exon
so has part: feature:593972-594180:-1:exon
so has part: feature:593710-593886:-1:exon
so has part: feature:593374-593596:-1:exon
so has part: feature:593061-593282:-1:exon
so has part: feature:592728-592932:-1:exon
so has part: feature:592521-592637:-1:exon
so has part: feature:592217-592388:-1:exon
so has part: feature:591895-592026:-1:exon
so has part: feature:591683-591822:-1:exon
so has part: feature:591461-591598:-1:exon
so has part: feature:591074-591276:-1:exon
so has part: feature:590869-590941:-1:exon
so has part: feature:590503-590705:-1:exon
so has part: feature:590326-590374:-1:exon
so has part: feature:590064-590141:-1:exon
so has part: feature:589474-589625:-1:exon
so has part: feature:589271-589395:-1:exon
so has part: feature:589102-589200:-1:exon
so has part: feature:588794-588989:-1:exon
so has part: feature:588621-588715:-1:exon
so has part: feature:588282-588314:-1:exon
so has part: feature:588084-588189:-1:exon
so has part: feature:587922-587996:-1:exon
so has part: feature:587571-587740:-1:exon
so has part: feature:587327-587504:-1:exon
so has part: feature:587113-587228:-1:exon
so has part: feature:586828-586972:-1:exon
so has part: feature:586622-586745:-1:exon
so has part: feature:586385-586514:-1:exon
so has part: feature:586192-586312:-1:exon
so has part: feature:585986-586048:-1:exon
so has part: feature:585812-585918:-1:exon
so has part: feature:585451-585592:-1:exon
so has part: feature:585247-585381:-1:exon
so has part: feature:585062-585165:-1:exon
so has part: feature:584890-584982:-1:exon
so has part: feature:584569-584812:-1:exon
so has part: feature:584160-584499:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:596925-597275:-1:exon

position:596925:-1
position: 596925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:596444-596519:-1:exon

position:596444:-1
position: 596444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:596519:-1
position: 596519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:596258-596351:-1:exon

position:596258:-1
position: 596258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:596351:-1
position: 596351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:596005-596146:-1:exon

position:596005:-1
position: 596005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:596146:-1
position: 596146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:595675-595924:-1:exon

position:595675:-1
position: 595675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:595924:-1
position: 595924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:595411-595605:-1:exon

position:595411:-1
position: 595411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:595605:-1
position: 595605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:595244-595324:-1:exon

position:595244:-1
position: 595244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:595324:-1
position: 595324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:594934-595159:-1:exon

position:594934:-1
position: 594934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:595159:-1
position: 595159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:594697-594836:-1:exon

position:594697:-1
position: 594697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:594836:-1
position: 594836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:594512-594628:-1:exon

position:594512:-1
position: 594512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:594628:-1
position: 594628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:594248-594427:-1:exon

position:594248:-1
position: 594248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:594427:-1
position: 594427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:593972-594180:-1:exon

position:593972:-1
position: 593972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:594180:-1
position: 594180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:593710-593886:-1:exon

position:593710:-1
position: 593710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:593886:-1
position: 593886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:593374-593596:-1:exon

position:593374:-1
position: 593374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:593596:-1
position: 593596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:593061-593282:-1:exon

position:593061:-1
position: 593061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:593282:-1
position: 593282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:592728-592932:-1:exon

position:592728:-1
position: 592728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:592932:-1
position: 592932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:592521-592637:-1:exon

position:592521:-1
position: 592521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:592637:-1
position: 592637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:592217-592388:-1:exon

position:592217:-1
position: 592217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:592388:-1
position: 592388
reference: sequence
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urn:…
SIO_000300: 19
SIO_000628: feature:591895-592026:-1:exon

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urn:…
SIO_000300: 20
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urn:…
SIO_000300: 21
SIO_000628: feature:591461-591598:-1:exon

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urn:…
SIO_000300: 22
SIO_000628: feature:591074-591276:-1:exon

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urn:…
SIO_000300: 23
SIO_000628: feature:590869-590941:-1:exon

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urn:…
SIO_000300: 24
SIO_000628: feature:590503-590705:-1:exon

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urn:…
SIO_000300: 25
SIO_000628: feature:590326-590374:-1:exon

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urn:…
SIO_000300: 26
SIO_000628: feature:590064-590141:-1:exon

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position:590141:-1
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urn:…
SIO_000300: 27
SIO_000628: feature:589474-589625:-1:exon

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urn:…
SIO_000300: 28
SIO_000628: feature:589271-589395:-1:exon

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urn:…
SIO_000300: 29
SIO_000628: feature:589102-589200:-1:exon

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position:589200:-1
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urn:…
SIO_000300: 30
SIO_000628: feature:588794-588989:-1:exon

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position:588989:-1
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urn:…
SIO_000300: 31
SIO_000628: feature:588621-588715:-1:exon

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position:588715:-1
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urn:…
SIO_000300: 32
SIO_000628: feature:588282-588314:-1:exon

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position:588314:-1
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urn:…
SIO_000300: 33
SIO_000628: feature:588084-588189:-1:exon

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position:588189:-1
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urn:…
SIO_000300: 34
SIO_000628: feature:587922-587996:-1:exon

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urn:…
SIO_000300: 35
SIO_000628: feature:587571-587740:-1:exon

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urn:…
SIO_000300: 36
SIO_000628: feature:587327-587504:-1:exon

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urn:…
SIO_000300: 37
SIO_000628: feature:587113-587228:-1:exon

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position:587228:-1
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reference: sequence
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urn:…
SIO_000300: 38
SIO_000628: feature:586828-586972:-1:exon

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urn:…
SIO_000300: 39
SIO_000628: feature:586622-586745:-1:exon

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urn:…
SIO_000300: 40
SIO_000628: feature:586385-586514:-1:exon

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urn:…
SIO_000300: 41
SIO_000628: feature:586192-586312:-1:exon

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urn:…
SIO_000300: 42
SIO_000628: feature:585986-586048:-1:exon

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SIO_000300: 43
SIO_000628: feature:585812-585918:-1:exon

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SIO_000300: 44
SIO_000628: feature:585451-585592:-1:exon

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urn:…
SIO_000300: 45
SIO_000628: feature:585247-585381:-1:exon

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urn:…
SIO_000300: 46
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SIO_000300: 47
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urn:…
SIO_000300: 48
SIO_000628: feature:584569-584812:-1:exon

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urn:…
SIO_000300: 49
SIO_000628: feature:584160-584499:-1:exon

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ABCA7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: ABCA7
product: ATP binding cassette subfamily A member 7, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_040537655.1
SIO_010081: ABCA7
subclass of: SO_0000673
so part of: ABCA7
location: complement(join(584276..584499,584569..584812,584890..584982,585062..585165,585247..585381,585451..585592,585812..585918,585986..586048,586192..586312,586385..586514,586622..586745,586828..586972,587113..587228,587327..587504,587571..587740,587922..587996,588084..588189,588282..588314,588621..588715,588794..588989,589271..589395,589474..589625,590064..590141,590326..590374,590503..590705,590869..590941,591074..591276,591461..591598,591683..591822,591895..592026,592217..592388,592521..592637,592728..592932,593061..593282,593374..593596,593710..593886,593972..594180,594248..594427,594512..594628,594697..594836,594934..595159,595244..595324,595411..595605,595675..595924,596005..596146,596258..596351,596444..596519,596925..597275))
location: region:584276-597275:-1
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so has part: feature:584890-584982:-1:exon
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so has part: feature:584276-584499:-1:exon

position:584276:-1
position: 584276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:596925-597275:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:596444-596519:-1:exon

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SIO_000300: 3
SIO_000628: feature:596258-596351:-1:exon

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SIO_000300: 4
SIO_000628: feature:596005-596146:-1:exon

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SIO_000300: 5
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urn:…
SIO_000300: 6
SIO_000628: feature:595411-595605:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:595244-595324:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:594934-595159:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:594697-594836:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:594512-594628:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:594248-594427:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:593972-594180:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:593710-593886:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:593374-593596:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:593061-593282:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:592728-592932:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:592521-592637:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:592217-592388:-1:exon

urn:…
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SIO_000300: 20
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urn:…
SIO_000300: 21
SIO_000628: feature:591461-591598:-1:exon

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SIO_000628: feature:591074-591276:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:590869-590941:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:590503-590705:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:590326-590374:-1:exon

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SIO_000300: 26
SIO_000628: feature:590064-590141:-1:exon

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SIO_000300: 27
SIO_000628: feature:589474-589625:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:589271-589395:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:588794-588989:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:588621-588715:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:588282-588314:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:588084-588189:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:587922-587996:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:587571-587740:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:587327-587504:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:587113-587228:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:586828-586972:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:586622-586745:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:586385-586514:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:586192-586312:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:585986-586048:-1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:585812-585918:-1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:585451-585592:-1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:585247-585381:-1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:585062-585165:-1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:584890-584982:-1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:584569-584812:-1:exon

urn:…
SIO_000300: 48
SIO_000628: feature:584276-584499:-1:exon

ABCA7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: ABCA7
product: ATP binding cassette subfamily A member 7, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_040537654.1
SIO_010081: ABCA7
subclass of: SO_0000673
so part of: ABCA7
location: complement(join(584276..584499,584569..584812,584890..584982,585062..585165,585247..585381,585451..585592,585812..585918,585986..586048,586192..586312,586385..586514,586622..586745,586828..586972,587113..587228,587327..587504,587571..587740,587922..587996,588084..588189,588282..588314,588621..588715,588794..588989,589102..589200,589271..589395,589474..589625,590064..590141,590326..590374,590503..590705,590869..590941,591074..591276,591461..591598,591683..591822,591895..592026,592217..592388,592521..592637,592728..592932,593061..593282,593374..593596,593710..593886,593972..594180,594248..594427,594512..594628,594697..594836,594934..595159,595244..595324,595411..595605,595675..595924,596005..596146,596258..596351,596444..596630))
location: region:584276-596630:-1
so has part: feature:596444-596630:-1:exon
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so has part: feature:590503-590705:-1:exon
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so has part: feature:584569-584812:-1:exon
so has part: feature:584276-584499:-1:exon

position:596630:-1
position: 596630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:596444-596630:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:596258-596351:-1:exon

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SIO_000628: feature:596005-596146:-1:exon

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SIO_000300: 6
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SIO_000300: 7
SIO_000628: feature:594934-595159:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:594697-594836:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:594512-594628:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:594248-594427:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:593972-594180:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:593710-593886:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:593374-593596:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:593061-593282:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:592728-592932:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:592521-592637:-1:exon

urn:…
SIO_000300: 17
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urn:…
SIO_000300: 18
SIO_000628: feature:591895-592026:-1:exon

urn:…
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SIO_000628: feature:591683-591822:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:591461-591598:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:591074-591276:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:590869-590941:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:590503-590705:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:590326-590374:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:590064-590141:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:589474-589625:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:589271-589395:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:589102-589200:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:588794-588989:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:588621-588715:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:588282-588314:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:588084-588189:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:587922-587996:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:587571-587740:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:587327-587504:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:587113-587228:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:586828-586972:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:586622-586745:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:586385-586514:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:586192-586312:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:585986-586048:-1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:585812-585918:-1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:585451-585592:-1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:585247-585381:-1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:585062-585165:-1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:584890-584982:-1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:584569-584812:-1:exon

urn:…
SIO_000300: 48
SIO_000628: feature:584276-584499:-1:exon

ABCA7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: ABCA7
product: ATP binding cassette subfamily A member 7, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_040537656.1
SIO_010081: ABCA7
subclass of: SO_0000673
so part of: ABCA7
location: complement(join(584276..584499,584569..584812,584890..584982,585062..585165,585247..585381,585451..585592,585812..585918,585986..586048,586192..586312,586385..586514,586622..586745,586828..586972,587113..587228,587327..587504,587571..587740,587922..587996,588084..588189,588282..588314,588621..588715,588794..588989,589102..589200,589271..589395,589474..589625,590064..590141,590326..590374,590503..590705,590869..590941,591074..591276,591461..591598,591683..591822,591895..592026,592217..592388,592521..592637,592728..592932,593061..593282,593374..593596,593710..593886,593972..594180,594248..594427,594512..594628,594697..594836,594934..595159,595244..595324,595411..595605,596005..596243))
location: region:584276-596243:-1
so has part: feature:596005-596243:-1:exon
so has part: feature:595411-595605:-1:exon
so has part: feature:595244-595324:-1:exon
so has part: feature:594934-595159:-1:exon
so has part: feature:594697-594836:-1:exon
so has part: feature:594512-594628:-1:exon
so has part: feature:594248-594427:-1:exon
so has part: feature:593972-594180:-1:exon
so has part: feature:593710-593886:-1:exon
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so has part: feature:592728-592932:-1:exon
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so has part: feature:591461-591598:-1:exon
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so has part: feature:590503-590705:-1:exon
so has part: feature:590326-590374:-1:exon
so has part: feature:590064-590141:-1:exon
so has part: feature:589474-589625:-1:exon
so has part: feature:589271-589395:-1:exon
so has part: feature:589102-589200:-1:exon
so has part: feature:588794-588989:-1:exon
so has part: feature:588621-588715:-1:exon
so has part: feature:588282-588314:-1:exon
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so has part: feature:587922-587996:-1:exon
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so has part: feature:587327-587504:-1:exon
so has part: feature:587113-587228:-1:exon
so has part: feature:586828-586972:-1:exon
so has part: feature:586622-586745:-1:exon
so has part: feature:586385-586514:-1:exon
so has part: feature:586192-586312:-1:exon
so has part: feature:585986-586048:-1:exon
so has part: feature:585812-585918:-1:exon
so has part: feature:585451-585592:-1:exon
so has part: feature:585247-585381:-1:exon
so has part: feature:585062-585165:-1:exon
so has part: feature:584890-584982:-1:exon
so has part: feature:584569-584812:-1:exon
so has part: feature:584276-584499:-1:exon

position:596243:-1
position: 596243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:596005-596243:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:595411-595605:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:595244-595324:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:594934-595159:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:594697-594836:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:594512-594628:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:594248-594427:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:593972-594180:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:593710-593886:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:593374-593596:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:593061-593282:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:592728-592932:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:592521-592637:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:592217-592388:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:591895-592026:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:591683-591822:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:591461-591598:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:591074-591276:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:590869-590941:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:590503-590705:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:590326-590374:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:590064-590141:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:589474-589625:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:589271-589395:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:589102-589200:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:588794-588989:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:588621-588715:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:588282-588314:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:588084-588189:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:587922-587996:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:587571-587740:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:587327-587504:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:587113-587228:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:586828-586972:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:586622-586745:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:586385-586514:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:586192-586312:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:585986-586048:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:585812-585918:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:585451-585592:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:585247-585381:-1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:585062-585165:-1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:584890-584982:-1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:584569-584812:-1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:584276-584499:-1:exon

ABCA7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: ABCA7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phospholipid-transporting ATPase ABCA7 isoform X2
translation: MAVGTQLGLLLWKNLVHRRRQRVQLAIELLWPLFLFVILIAVRQSHPPFQQHQCHFPNKALPSAGTLPWLQGIICNVNNPCFQHPTPGEAPGVVGNFNGSILSRLLAEARRVVLHAERQQLPQRFAQLLPALRGLGALSPAPPARPLRDFLREDETLAHFLRTNASLPPALVEELLGARLNPRALFSGGARAPLEAVVCNGSELGTFLEGRDAAGTWRLQRELCALPGPTLRALGAAVLSQLDLPRLLAERLSSEADGAVGALGPFLRGAESLLREVSSMGSAAELRHEVRALQATGASGTFGALSRIACGHPEGGGLRVPSLNWYEDNDVKAFLDRGGSEQGAGAPDNGSSPFCRELIRSLEATPLSQLFWRGIKPLFVGKILYTPPGPATNSIMAEVNRTLQELVALRDAAGAWRELGPHIRAFLNSSLELQVLRELLLAPGTAPLVDGILNGTSWTASALARLLAGPAAGPGLSWHQVLDEADQVVGTLLQFLECVRVDKIEAVATEEQLVARALELLEERQFWAAVVFQPPLSTSATALPPHVHYKIRMDIDDVTRTNKIKDRFWDPGPAADPFSDLRYVWGGFVYVQDLVEQAVVRAQTGAAPRTGVYVQQMPYPCYVDDVFLRVLNRSLPLFMTLAWIYSVAMIIKGVVHEKEARLKETMKAMGLSSGILWLSWFLSSFIPFLLSSAFLVLILKLGNILPYSDPAVIFLFLGTFSVATICQCFLISTFFLRANLASACGGIIYFSLYLPYVLCVAWRDHVTFPLRVLVSLLSPVAFGFGCEYFSLYEEQGVGIQWHNLGVSPVPGDPYSFATAMGLLLLDAGLYGLATWYIEGVFPGQYGVPKPWNFPFLKSYWFGEPPSAGHPPFPTDPLTAPQVLVEEPPAQLQPGVSIRNLVKIYHSSNHVAVNGLSLDFYEGQITSFLGHNGAGKTTTMSILTGLLPPTSGTAYVLGWDIRCDIDSIRKTMGTCPQHNVLFDILTVEEHIWFYGRLKGLAEEQVKVEMEQLLRDTGLPHKRREQTRNLSGGMQRKLSVAIAFVGGSRVVVLDEPTAGVDPYSRRSIWELLLKYRKGRTIILSTHYMDEAELLGDRIAIIAQGRLRCCGSPLFLKARLGTGYYLTLVKRERAEPGGSTPSAPKKSSSGSEHSGDTGLGSEQDSEASTVDVPQLSALIQKLVLGSRLVEDIGHEVLFVLPYSGAKDGAFGELFQELDARLGELGISGYGISDTTLEEIFLKVAEDTGVDGDRTGTRTSRPGRAAASGEEGDSRAADGELAEEPQETDLLRGAAEGDRRLRGWALTRQQLRALFIKRLLHARRSTRGFFAQIVLPAVFVCIALLFSLIVPPFGKYPPLRLEPWMYGHQFTFFRTGPCPPASHPDGFWQPPAPSAMLEVLQHGNWTWAEPSPPCQCSGPGARRMLPECPPAAGGLPPPQVQRGTGDILLNLTGRNISDYLVKTYPQVIRQGLKTKKWVNEQRYGGFSLGAGSSQLLPSAEEVDRAVQELRALFNVTQGSPADRLLGNLSRFFEGLDARRNIKVWFNNKGWHAMVSFLNVASNALLRARLPAGADPALYGITATNHPLNLTKEQLSEAALMATSVDVLVSICVIFAMSFVPASFVLFLIEERVSKAKHLQFVSGMKPVTYWLGNFAWDMCNYLVPALLVVLIFLCFQQKAYVSSANLPSLVLLLLLYGWSITPLMYPASFLFSIPSTAYVALTCINLFIGINGSVATFVLELFVDQKLNDINRILKKVFLVFPHFCLGRGLIDMVKNQAMADAFERFGDKRFVSPLSWDLAGKNMFAMAVEGVIFFLFTLLLQYRFFLRLRPQALQLPPLGDEDQDVAQERVRVGSSPRHGDVLLLKDLTKVYQHRRAPAVDRLCLAIPAGECFGLLGVNGAGKTSTFKMLTGDTEVTLGEAWLKGHSVLTDLQSVHQNMGYCPQFDAITDLLTGREHLEFYSRLRGVPEEEIPRVAQWGIAKLGLEPHADRPAGKYSGGNKRKL…
SIO_010081: ABCA7
subclass of: SO_0000673
so part of: ABCA7
location: complement(join(584359..584499,584569..584812,584890..584982,585062..585165,585247..585381,585451..585592,585812..585918,585986..586048,586192..586312,586385..586514,586622..586745,586828..586972,587113..587228,587327..587504,587571..587740,587922..587996,588084..588189,588282..588314,588621..588715,588794..588989,589271..589395,589474..589625,590064..590141,590326..590374,590503..590705,590869..590941,591074..591276,591461..591598,591683..591822,591895..592026,592217..592388,592521..592637,592728..592932,593061..593282,593374..593596,593710..593886,593972..594180,594248..594427,594512..594628,594697..594836,594934..595159,595244..595324,595411..595605,595675..595924,596005..596146,596258..596351,596444..596509))
location: region:584359-596509:-1
so has part: feature:596444-596509:-1:exon
so has part: feature:596258-596351:-1:exon
so has part: feature:596005-596146:-1:exon
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so has part: feature:593710-593886:-1:exon
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so has part: feature:591683-591822:-1:exon
so has part: feature:591461-591598:-1:exon
so has part: feature:591074-591276:-1:exon
so has part: feature:590869-590941:-1:exon
so has part: feature:590503-590705:-1:exon
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so has part: feature:588621-588715:-1:exon
so has part: feature:588282-588314:-1:exon
so has part: feature:588084-588189:-1:exon
so has part: feature:587922-587996:-1:exon
so has part: feature:587571-587740:-1:exon
so has part: feature:587327-587504:-1:exon
so has part: feature:587113-587228:-1:exon
so has part: feature:586828-586972:-1:exon
so has part: feature:586622-586745:-1:exon
so has part: feature:586385-586514:-1:exon
so has part: feature:586192-586312:-1:exon
so has part: feature:585986-586048:-1:exon
so has part: feature:585812-585918:-1:exon
so has part: feature:585451-585592:-1:exon
so has part: feature:585247-585381:-1:exon
so has part: feature:585062-585165:-1:exon
so has part: feature:584890-584982:-1:exon
so has part: feature:584569-584812:-1:exon
so has part: feature:584359-584499:-1:exon

XP_040393589.1
type: Protein
SIO_000068: ncbiprotein

position:584359:-1
position: 584359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:596509:-1
position: 596509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:596444-596509:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:596258-596351:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:596005-596146:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:595675-595924:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:595411-595605:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:595244-595324:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:594934-595159:-1:exon

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SIO_000300: 8
SIO_000628: feature:594697-594836:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:594512-594628:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:594248-594427:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:593972-594180:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:593710-593886:-1:exon

urn:…
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SIO_000628: feature:593374-593596:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:593061-593282:-1:exon

urn:…
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SIO_000628: feature:592728-592932:-1:exon

urn:…
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SIO_000628: feature:592521-592637:-1:exon

urn:…
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SIO_000628: feature:592217-592388:-1:exon

urn:…
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urn:…
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urn:…
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SIO_000628: feature:591461-591598:-1:exon

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urn:…
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SIO_000628: feature:590869-590941:-1:exon

urn:…
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SIO_000628: feature:590503-590705:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:590326-590374:-1:exon

urn:…
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SIO_000628: feature:590064-590141:-1:exon

urn:…
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urn:…
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SIO_000628: feature:588794-588989:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:588621-588715:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:588282-588314:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:588084-588189:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:587922-587996:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:587571-587740:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:587327-587504:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:587113-587228:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:586828-586972:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:586622-586745:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:586385-586514:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:586192-586312:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:585986-586048:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:585812-585918:-1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:585451-585592:-1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:585247-585381:-1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:585062-585165:-1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:584890-584982:-1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:584569-584812:-1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:584359-584499:-1:exon

ABCA7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: ABCA7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phospholipid-transporting ATPase ABCA7 isoform X1
translation: MAVGTQLGLLLWKNLVHRRRQRVQLAIELLWPLFLFVILIAVRQSHPPFQQHQCHFPNKALPSAGTLPWLQGIICNVNNPCFQHPTPGEAPGVVGNFNGSILSRLLAEARRVVLHAERQQLPQRFAQLLPALRGLGALSPAPPARPLRDFLREDETLAHFLRTNASLPPALVEELLGARLNPRALFSGGARAPLEAVVCNGSELGTFLEGRDAAGTWRLQRELCALPGPTLRALGAAVLSQLDLPRLLAERLSSEADGAVGALGPFLRGAESLLREVSSMGSAAELRHEVRALQATGASGTFGALSRIACGHPEGGGLRVPSLNWYEDNDVKAFLDRGGSEQGAGAPDNGSSPFCRELIRSLEATPLSQLFWRGIKPLFVGKILYTPPGPATNSIMAEVNRTLQELVALRDAAGAWRELGPHIRAFLNSSLELQVLRELLLAPGTAPLVDGILNGTSWTASALARLLAGPAAGPGLSWHQVLDEADQVVGTLLQFLECVRVDKIEAVATEEQLVARALELLEERQFWAAVVFQPPLSTSATALPPHVHYKIRMDIDDVTRTNKIKDRFWDPGPAADPFSDLRYVWGGFVYVQDLVEQAVVRAQTGAAPRTGVYVQQMPYPCYVDDVFLRVLNRSLPLFMTLAWIYSVAMIIKGVVHEKEARLKETMKAMGLSSGILWLSWFLSSFIPFLLSSAFLVLILKLGNILPYSDPAVIFLFLGTFSVATICQCFLISTFFLRANLASACGGIIYFSLYLPYVLCVAWRDHVTFPLRVLVSLLSPVAFGFGCEYFSLYEEQGVGIQWHNLGVSPVPGDPYSFATAMGLLLLDAGLYGLATWYIEGVFPGQYGVPKPWNFPFLKSYWFGEPPSAGHPPFPTDPLTAPQVLVEEPPAQLQPGVSIRNLVKIYHSSNHVAVNGLSLDFYEGQITSFLGHNGAGKTTTMSILTGLLPPTSGTAYVLGWDIRCDIDSIRKTMGTCPQHNVLFDILTVEEHIWFYGRLKGLAEEQVKVEMEQLLRDTGLPHKRREQTRNLSGGMQRKLSVAIAFVGGSRVVVLDEPTAGVDPYSRRSIWELLLKYRKGRTIILSTHYMDEAELLGDRIAIIAQGRLRCCGSPLFLKARLGTGYYLTLVKRERAEPGGSTPSAPKKSSSGSEHSGDTGLGSEQDSEASTVDVPQLSALIQKLVLGSRLVEDIGHEVLFVLPYSGAKDGAFGELFQELDARLGELGISGYGISDTTLEEIFLKVAEDTGVDGDRTGTRTSRPGRAAASGEEGDSRAADGELAEEPQETDLLRGAAEGDRRLRGWALTRQQLRALFIKRLLHARRSTRGFFAQIVLPAVFVCIALLFSLIVPPFGKYPPLRLEPWMYGHQFTFFSDDAPGDPDTAQLLGALLAEPGFGTKCMKEAAEATGPCPPASHPDGFWQPPAPSAMLEVLQHGNWTWAEPSPPCQCSGPGARRMLPECPPAAGGLPPPQVQRGTGDILLNLTGRNISDYLVKTYPQVIRQGLKTKKWVNEQRYGGFSLGAGSSQLLPSAEEVDRAVQELRALFNVTQGSPADRLLGNLSRFFEGLDARRNIKVWFNNKGWHAMVSFLNVASNALLRARLPAGADPALYGITATNHPLNLTKEQLSEAALMATSVDVLVSICVIFAMSFVPASFVLFLIEERVSKAKHLQFVSGMKPVTYWLGNFAWDMCNYLVPALLVVLIFLCFQQKAYVSSANLPSLVLLLLLYGWSITPLMYPASFLFSIPSTAYVALTCINLFIGINGSVATFVLELFVDQKLNDINRILKKVFLVFPHFCLGRGLIDMVKNQAMADAFERFGDKRFVSPLSWDLAGKNMFAMAVEGVIFFLFTLLLQYRFFLRLRPQALQLPPLGDEDQDVAQERVRVGSSPRHGDVLLLKDLTKVYQHRRAPAVDRLCLAIPAGECFGLLGVNGAGKTSTFKMLTGDTEVTLGEAWLKGHSVLTDLQSVHQNMGYCPQFDAITDLLTGREHLEFYSRLRGVPEEE…
SIO_010081: ABCA7
subclass of: SO_0000673
so part of: ABCA7
location: complement(join(584359..584499,584569..584812,584890..584982,585062..585165,585247..585381,585451..585592,585812..585918,585986..586048,586192..586312,586385..586514,586622..586745,586828..586972,587113..587228,587327..587504,587571..587740,587922..587996,588084..588189,588282..588314,588621..588715,588794..588989,589102..589200,589271..589395,589474..589625,590064..590141,590326..590374,590503..590705,590869..590941,591074..591276,591461..591598,591683..591822,591895..592026,592217..592388,592521..592637,592728..592932,593061..593282,593374..593596,593710..593886,593972..594180,594248..594427,594512..594628,594697..594836,594934..595159,595244..595324,595411..595605,595675..595924,596005..596146,596258..596351,596444..596509))
location: region:584359-596509:-1
so has part: feature:596444-596509:-1:exon
so has part: feature:596258-596351:-1:exon
so has part: feature:596005-596146:-1:exon
so has part: feature:595675-595924:-1:exon
so has part: feature:595411-595605:-1:exon
so has part: feature:595244-595324:-1:exon
so has part: feature:594934-595159:-1:exon
so has part: feature:594697-594836:-1:exon
so has part: feature:594512-594628:-1:exon
so has part: feature:594248-594427:-1:exon
so has part: feature:593972-594180:-1:exon
so has part: feature:593710-593886:-1:exon
so has part: feature:593374-593596:-1:exon
so has part: feature:593061-593282:-1:exon
so has part: feature:592728-592932:-1:exon
so has part: feature:592521-592637:-1:exon
so has part: feature:592217-592388:-1:exon
so has part: feature:591895-592026:-1:exon
so has part: feature:591683-591822:-1:exon
so has part: feature:591461-591598:-1:exon
so has part: feature:591074-591276:-1:exon
so has part: feature:590869-590941:-1:exon
so has part: feature:590503-590705:-1:exon
so has part: feature:590326-590374:-1:exon
so has part: feature:590064-590141:-1:exon
so has part: feature:589474-589625:-1:exon
so has part: feature:589271-589395:-1:exon
so has part: feature:589102-589200:-1:exon
so has part: feature:588794-588989:-1:exon
so has part: feature:588621-588715:-1:exon
so has part: feature:588282-588314:-1:exon
so has part: feature:588084-588189:-1:exon
so has part: feature:587922-587996:-1:exon
so has part: feature:587571-587740:-1:exon
so has part: feature:587327-587504:-1:exon
so has part: feature:587113-587228:-1:exon
so has part: feature:586828-586972:-1:exon
so has part: feature:586622-586745:-1:exon
so has part: feature:586385-586514:-1:exon
so has part: feature:586192-586312:-1:exon
so has part: feature:585986-586048:-1:exon
so has part: feature:585812-585918:-1:exon
so has part: feature:585451-585592:-1:exon
so has part: feature:585247-585381:-1:exon
so has part: feature:585062-585165:-1:exon
so has part: feature:584890-584982:-1:exon
so has part: feature:584569-584812:-1:exon
so has part: feature:584359-584499:-1:exon

XP_040393587.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:596444-596509:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:596258-596351:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:596005-596146:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:595675-595924:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:595411-595605:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:595244-595324:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:594934-595159:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:594697-594836:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:594512-594628:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:594248-594427:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:593972-594180:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:593710-593886:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:593374-593596:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:593061-593282:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:592728-592932:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:592521-592637:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:592217-592388:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:591895-592026:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:591683-591822:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:591461-591598:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:591074-591276:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:590869-590941:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:590503-590705:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:590326-590374:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:590064-590141:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:589474-589625:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:589271-589395:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:589102-589200:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:588794-588989:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:588621-588715:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:588282-588314:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:588084-588189:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:587922-587996:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:587571-587740:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:587327-587504:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:587113-587228:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:586828-586972:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:586622-586745:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:586385-586514:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:586192-586312:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:585986-586048:-1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:585812-585918:-1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:585451-585592:-1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:585247-585381:-1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:585062-585165:-1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:584890-584982:-1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:584569-584812:-1:exon

urn:…
SIO_000300: 48
SIO_000628: feature:584359-584499:-1:exon

ABCA7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: ABCA7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phospholipid-transporting ATPase ABCA7 isoform X1
translation: MAVGTQLGLLLWKNLVHRRRQRVQLAIELLWPLFLFVILIAVRQSHPPFQQHQCHFPNKALPSAGTLPWLQGIICNVNNPCFQHPTPGEAPGVVGNFNGSILSRLLAEARRVVLHAERQQLPQRFAQLLPALRGLGALSPAPPARPLRDFLREDETLAHFLRTNASLPPALVEELLGARLNPRALFSGGARAPLEAVVCNGSELGTFLEGRDAAGTWRLQRELCALPGPTLRALGAAVLSQLDLPRLLAERLSSEADGAVGALGPFLRGAESLLREVSSMGSAAELRHEVRALQATGASGTFGALSRIACGHPEGGGLRVPSLNWYEDNDVKAFLDRGGSEQGAGAPDNGSSPFCRELIRSLEATPLSQLFWRGIKPLFVGKILYTPPGPATNSIMAEVNRTLQELVALRDAAGAWRELGPHIRAFLNSSLELQVLRELLLAPGTAPLVDGILNGTSWTASALARLLAGPAAGPGLSWHQVLDEADQVVGTLLQFLECVRVDKIEAVATEEQLVARALELLEERQFWAAVVFQPPLSTSATALPPHVHYKIRMDIDDVTRTNKIKDRFWDPGPAADPFSDLRYVWGGFVYVQDLVEQAVVRAQTGAAPRTGVYVQQMPYPCYVDDVFLRVLNRSLPLFMTLAWIYSVAMIIKGVVHEKEARLKETMKAMGLSSGILWLSWFLSSFIPFLLSSAFLVLILKLGNILPYSDPAVIFLFLGTFSVATICQCFLISTFFLRANLASACGGIIYFSLYLPYVLCVAWRDHVTFPLRVLVSLLSPVAFGFGCEYFSLYEEQGVGIQWHNLGVSPVPGDPYSFATAMGLLLLDAGLYGLATWYIEGVFPGQYGVPKPWNFPFLKSYWFGEPPSAGHPPFPTDPLTAPQVLVEEPPAQLQPGVSIRNLVKIYHSSNHVAVNGLSLDFYEGQITSFLGHNGAGKTTTMSILTGLLPPTSGTAYVLGWDIRCDIDSIRKTMGTCPQHNVLFDILTVEEHIWFYGRLKGLAEEQVKVEMEQLLRDTGLPHKRREQTRNLSGGMQRKLSVAIAFVGGSRVVVLDEPTAGVDPYSRRSIWELLLKYRKGRTIILSTHYMDEAELLGDRIAIIAQGRLRCCGSPLFLKARLGTGYYLTLVKRERAEPGGSTPSAPKKSSSGSEHSGDTGLGSEQDSEASTVDVPQLSALIQKLVLGSRLVEDIGHEVLFVLPYSGAKDGAFGELFQELDARLGELGISGYGISDTTLEEIFLKVAEDTGVDGDRTGTRTSRPGRAAASGEEGDSRAADGELAEEPQETDLLRGAAEGDRRLRGWALTRQQLRALFIKRLLHARRSTRGFFAQIVLPAVFVCIALLFSLIVPPFGKYPPLRLEPWMYGHQFTFFSDDAPGDPDTAQLLGALLAEPGFGTKCMKEAAEATGPCPPASHPDGFWQPPAPSAMLEVLQHGNWTWAEPSPPCQCSGPGARRMLPECPPAAGGLPPPQVQRGTGDILLNLTGRNISDYLVKTYPQVIRQGLKTKKWVNEQRYGGFSLGAGSSQLLPSAEEVDRAVQELRALFNVTQGSPADRLLGNLSRFFEGLDARRNIKVWFNNKGWHAMVSFLNVASNALLRARLPAGADPALYGITATNHPLNLTKEQLSEAALMATSVDVLVSICVIFAMSFVPASFVLFLIEERVSKAKHLQFVSGMKPVTYWLGNFAWDMCNYLVPALLVVLIFLCFQQKAYVSSANLPSLVLLLLLYGWSITPLMYPASFLFSIPSTAYVALTCINLFIGINGSVATFVLELFVDQKLNDINRILKKVFLVFPHFCLGRGLIDMVKNQAMADAFERFGDKRFVSPLSWDLAGKNMFAMAVEGVIFFLFTLLLQYRFFLRLRPQALQLPPLGDEDQDVAQERVRVGSSPRHGDVLLLKDLTKVYQHRRAPAVDRLCLAIPAGECFGLLGVNGAGKTSTFKMLTGDTEVTLGEAWLKGHSVLTDLQSVHQNMGYCPQFDAITDLLTGREHLEFYSRLRGVPEEE…
SIO_010081: ABCA7
subclass of: SO_0000673
so part of: ABCA7
location: complement(join(584359..584499,584569..584812,584890..584982,585062..585165,585247..585381,585451..585592,585812..585918,585986..586048,586192..586312,586385..586514,586622..586745,586828..586972,587113..587228,587327..587504,587571..587740,587922..587996,588084..588189,588282..588314,588621..588715,588794..588989,589102..589200,589271..589395,589474..589625,590064..590141,590326..590374,590503..590705,590869..590941,591074..591276,591461..591598,591683..591822,591895..592026,592217..592388,592521..592637,592728..592932,593061..593282,593374..593596,593710..593886,593972..594180,594248..594427,594512..594628,594697..594836,594934..595159,595244..595324,595411..595605,595675..595924,596005..596146,596258..596351,596444..596509))
location: region:584359-596509:-1
so has part: feature:596444-596509:-1:exon
so has part: feature:596258-596351:-1:exon
so has part: feature:596005-596146:-1:exon
so has part: feature:595675-595924:-1:exon
so has part: feature:595411-595605:-1:exon
so has part: feature:595244-595324:-1:exon
so has part: feature:594934-595159:-1:exon
so has part: feature:594697-594836:-1:exon
so has part: feature:594512-594628:-1:exon
so has part: feature:594248-594427:-1:exon
so has part: feature:593972-594180:-1:exon
so has part: feature:593710-593886:-1:exon
so has part: feature:593374-593596:-1:exon
so has part: feature:593061-593282:-1:exon
so has part: feature:592728-592932:-1:exon
so has part: feature:592521-592637:-1:exon
so has part: feature:592217-592388:-1:exon
so has part: feature:591895-592026:-1:exon
so has part: feature:591683-591822:-1:exon
so has part: feature:591461-591598:-1:exon
so has part: feature:591074-591276:-1:exon
so has part: feature:590869-590941:-1:exon
so has part: feature:590503-590705:-1:exon
so has part: feature:590326-590374:-1:exon
so has part: feature:590064-590141:-1:exon
so has part: feature:589474-589625:-1:exon
so has part: feature:589271-589395:-1:exon
so has part: feature:589102-589200:-1:exon
so has part: feature:588794-588989:-1:exon
so has part: feature:588621-588715:-1:exon
so has part: feature:588282-588314:-1:exon
so has part: feature:588084-588189:-1:exon
so has part: feature:587922-587996:-1:exon
so has part: feature:587571-587740:-1:exon
so has part: feature:587327-587504:-1:exon
so has part: feature:587113-587228:-1:exon
so has part: feature:586828-586972:-1:exon
so has part: feature:586622-586745:-1:exon
so has part: feature:586385-586514:-1:exon
so has part: feature:586192-586312:-1:exon
so has part: feature:585986-586048:-1:exon
so has part: feature:585812-585918:-1:exon
so has part: feature:585451-585592:-1:exon
so has part: feature:585247-585381:-1:exon
so has part: feature:585062-585165:-1:exon
so has part: feature:584890-584982:-1:exon
so has part: feature:584569-584812:-1:exon
so has part: feature:584359-584499:-1:exon

XP_040393588.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:596444-596509:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:596258-596351:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:596005-596146:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:595675-595924:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:595411-595605:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:595244-595324:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:594934-595159:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:594697-594836:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:594512-594628:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:594248-594427:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:593972-594180:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:593710-593886:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:593374-593596:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:593061-593282:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:592728-592932:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:592521-592637:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:592217-592388:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:591895-592026:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:591683-591822:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:591461-591598:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:591074-591276:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:590869-590941:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:590503-590705:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:590326-590374:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:590064-590141:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:589474-589625:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:589271-589395:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:589102-589200:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:588794-588989:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:588621-588715:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:588282-588314:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:588084-588189:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:587922-587996:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:587571-587740:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:587327-587504:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:587113-587228:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:586828-586972:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:586622-586745:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:586385-586514:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:586192-586312:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:585986-586048:-1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:585812-585918:-1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:585451-585592:-1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:585247-585381:-1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:585062-585165:-1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:584890-584982:-1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:584569-584812:-1:exon

urn:…
SIO_000300: 48
SIO_000628: feature:584359-584499:-1:exon

ABCA7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: ABCA7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phospholipid-transporting ATPase ABCA7 isoform X3
translation: MGPGALPAQVHGSGGTRTHLPACRRPLPQQGAALGGDAALAPGHHLQREQPLLPAPHARGGPRRGGQLQRLHLFSGGARAPLEAVVCNGSELGTFLEGRDAAGTWRLQRELCALPGPTLRALGAAVLSQLDLPRLLAERLSSEADGAVGALGPFLRGAESLLREVSSMGSAAELRHEVRALQATGASGTFGALSRIACGHPEGGGLRVPSLNWYEDNDVKAFLDRGGSEQGAGAPDNGSSPFCRELIRSLEATPLSQLFWRGIKPLFVGKILYTPPGPATNSIMAEVNRTLQELVALRDAAGAWRELGPHIRAFLNSSLELQVLRELLLAPGTAPLVDGILNGTSWTASALARLLAGPAAGPGLSWHQVLDEADQVVGTLLQFLECVRVDKIEAVATEEQLVARALELLEERQFWAAVVFQPPLSTSATALPPHVHYKIRMDIDDVTRTNKIKDRFWDPGPAADPFSDLRYVWGGFVYVQDLVEQAVVRAQTGAAPRTGVYVQQMPYPCYVDDVFLRVLNRSLPLFMTLAWIYSVAMIIKGVVHEKEARLKETMKAMGLSSGILWLSWFLSSFIPFLLSSAFLVLILKLGNILPYSDPAVIFLFLGTFSVATICQCFLISTFFLRANLASACGGIIYFSLYLPYVLCVAWRDHVTFPLRVLVSLLSPVAFGFGCEYFSLYEEQGVGIQWHNLGVSPVPGDPYSFATAMGLLLLDAGLYGLATWYIEGVFPGQYGVPKPWNFPFLKSYWFGEPPSAGHPPFPTDPLTAPQVLVEEPPAQLQPGVSIRNLVKIYHSSNHVAVNGLSLDFYEGQITSFLGHNGAGKTTTMSILTGLLPPTSGTAYVLGWDIRCDIDSIRKTMGTCPQHNVLFDILTVEEHIWFYGRLKGLAEEQVKVEMEQLLRDTGLPHKRREQTRNLSGGMQRKLSVAIAFVGGSRVVVLDEPTAGVDPYSRRSIWELLLKYRKGRTIILSTHYMDEAELLGDRIAIIAQGRLRCCGSPLFLKARLGTGYYLTLVKRERAEPGGSTPSAPKKSSSGSEHSGDTGLGSEQDSEASTVDVPQLSALIQKLVLGSRLVEDIGHEVLFVLPYSGAKDGAFGELFQELDARLGELGISGYGISDTTLEEIFLKVAEDTGVDGDRTGTRTSRPGRAAASGEEGDSRAADGELAEEPQETDLLRGAAEGDRRLRGWALTRQQLRALFIKRLLHARRSTRGFFAQIVLPAVFVCIALLFSLIVPPFGKYPPLRLEPWMYGHQFTFFSDDAPGDPDTAQLLGALLAEPGFGTKCMKEAAEATGPCPPASHPDGFWQPPAPSAMLEVLQHGNWTWAEPSPPCQCSGPGARRMLPECPPAAGGLPPPQVQRGTGDILLNLTGRNISDYLVKTYPQVIRQGLKTKKWVNEQRYGGFSLGAGSSQLLPSAEEVDRAVQELRALFNVTQGSPADRLLGNLSRFFEGLDARRNIKVWFNNKGWHAMVSFLNVASNALLRARLPAGADPALYGITATNHPLNLTKEQLSEAALMATSVDVLVSICVIFAMSFVPASFVLFLIEERVSKAKHLQFVSGMKPVTYWLGNFAWDMCNYLVPALLVVLIFLCFQQKAYVSSANLPSLVLLLLLYGWSITPLMYPASFLFSIPSTAYVALTCINLFIGINGSVATFVLELFVDQKLNDINRILKKVFLVFPHFCLGRGLIDMVKNQAMADAFERFGDKRFVSPLSWDLAGKNMFAMAVEGVIFFLFTLLLQYRFFLRLRPQALQLPPLGDEDQDVAQERVRVGSSPRHGDVLLLKDLTKVYQHRRAPAVDRLCLAIPAGECFGLLGVNGAGKTSTFKMLTGDTEVTLGEAWLKGHSVLTDLQSVHQNMGYCPQFDAITDLLTGREHLEFYSRLRGVPEEEIPRVAQWGIAKLGLEPHADRPAGKYSGGNKRKLSTAIALIGCPPIIFLDEPTTGMDPGARRFLWDCILSLVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSIQHLK…
SIO_010081: ABCA7
subclass of: SO_0000673
so part of: ABCA7
location: complement(join(584359..584499,584569..584812,584890..584982,585062..585165,585247..585381,585451..585592,585812..585918,585986..586048,586192..586312,586385..586514,586622..586745,586828..586972,587113..587228,587327..587504,587571..587740,587922..587996,588084..588189,588282..588314,588621..588715,588794..588989,589102..589200,589271..589395,589474..589625,590064..590141,590326..590374,590503..590705,590869..590941,591074..591276,591461..591598,591683..591822,591895..592026,592217..592388,592521..592637,592728..592932,593061..593282,593374..593596,593710..593886,593972..594180,594248..594427,594512..594628,594697..594836,594934..595159,595244..595324,595411..595605,596005..596220))
location: region:584359-596220:-1
so has part: feature:596005-596220:-1:exon
so has part: feature:595411-595605:-1:exon
so has part: feature:595244-595324:-1:exon
so has part: feature:594934-595159:-1:exon
so has part: feature:594697-594836:-1:exon
so has part: feature:594512-594628:-1:exon
so has part: feature:594248-594427:-1:exon
so has part: feature:593972-594180:-1:exon
so has part: feature:593710-593886:-1:exon
so has part: feature:593374-593596:-1:exon
so has part: feature:593061-593282:-1:exon
so has part: feature:592728-592932:-1:exon
so has part: feature:592521-592637:-1:exon
so has part: feature:592217-592388:-1:exon
so has part: feature:591895-592026:-1:exon
so has part: feature:591683-591822:-1:exon
so has part: feature:591461-591598:-1:exon
so has part: feature:591074-591276:-1:exon
so has part: feature:590869-590941:-1:exon
so has part: feature:590503-590705:-1:exon
so has part: feature:590326-590374:-1:exon
so has part: feature:590064-590141:-1:exon
so has part: feature:589474-589625:-1:exon
so has part: feature:589271-589395:-1:exon
so has part: feature:589102-589200:-1:exon
so has part: feature:588794-588989:-1:exon
so has part: feature:588621-588715:-1:exon
so has part: feature:588282-588314:-1:exon
so has part: feature:588084-588189:-1:exon
so has part: feature:587922-587996:-1:exon
so has part: feature:587571-587740:-1:exon
so has part: feature:587327-587504:-1:exon
so has part: feature:587113-587228:-1:exon
so has part: feature:586828-586972:-1:exon
so has part: feature:586622-586745:-1:exon
so has part: feature:586385-586514:-1:exon
so has part: feature:586192-586312:-1:exon
so has part: feature:585986-586048:-1:exon
so has part: feature:585812-585918:-1:exon
so has part: feature:585451-585592:-1:exon
so has part: feature:585247-585381:-1:exon
so has part: feature:585062-585165:-1:exon
so has part: feature:584890-584982:-1:exon
so has part: feature:584569-584812:-1:exon
so has part: feature:584359-584499:-1:exon

XP_040393590.1
type: Protein
SIO_000068: ncbiprotein

position:596220:-1
position: 596220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:596005-596220:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:595411-595605:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:595244-595324:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:594934-595159:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:594697-594836:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:594512-594628:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:594248-594427:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:593972-594180:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:593710-593886:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:593374-593596:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:593061-593282:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:592728-592932:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:592521-592637:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:592217-592388:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:591895-592026:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:591683-591822:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:591461-591598:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:591074-591276:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:590869-590941:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:590503-590705:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:590326-590374:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:590064-590141:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:589474-589625:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:589271-589395:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:589102-589200:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:588794-588989:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:588621-588715:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:588282-588314:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:588084-588189:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:587922-587996:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:587571-587740:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:587327-587504:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:587113-587228:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:586828-586972:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:586622-586745:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:586385-586514:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:586192-586312:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:585986-586048:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:585812-585918:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:585451-585592:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:585247-585381:-1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:585062-585165:-1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:584890-584982:-1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:584569-584812:-1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:584359-584499:-1:exon

CNN2
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: CNN2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(597523..602503)
location: region:597523-602503:-1
so has part: feature:597523-602503:-1:exon
subclass of: SO_0000010

121060158
type: Gene
SIO_000068: ncbigene

position:597523:-1
position: 597523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:602503:-1
position: 602503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:597523-602503:-1:exon

CNN2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CNN2
product: calponin 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537679.1
SIO_010081: CNN2
subclass of: SO_0000673
so part of: CNN2
location: complement(join(597523..598312,598390..599049,599130..599196,599491..599612,602350..602503))
location: region:597523-602503:-1
so has part: feature:602350-602503:-1:exon
so has part: feature:599491-599612:-1:exon
so has part: feature:599130-599196:-1:exon
so has part: feature:598390-599049:-1:exon
so has part: feature:597523-598312:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:602350-602503:-1:exon

position:602350:-1
position: 602350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:599491-599612:-1:exon

position:599491:-1
position: 599491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:599612:-1
position: 599612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:599130-599196:-1:exon

position:599130:-1
position: 599130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:599196:-1
position: 599196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:598390-599049:-1:exon

position:598390:-1
position: 598390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:599049:-1
position: 599049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:597523-598312:-1:exon

position:598312:-1
position: 598312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CNN2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: CNN2
product: calponin 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 70 long SRA reads, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040537680.1
SIO_010081: CNN2
subclass of: SO_0000673
so part of: CNN2
location: complement(join(597523..598312,598390..598536,598692..598808,598912..599049,599130..599196,599491..599612,602350..602502))
location: region:597523-602502:-1
so has part: feature:602350-602502:-1:exon
so has part: feature:599491-599612:-1:exon
so has part: feature:599130-599196:-1:exon
so has part: feature:598912-599049:-1:exon
so has part: feature:598692-598808:-1:exon
so has part: feature:598390-598536:-1:exon
so has part: feature:597523-598312:-1:exon

position:602502:-1
position: 602502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:602350-602502:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:599491-599612:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:599130-599196:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:598912-599049:-1:exon

position:598912:-1
position: 598912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:598692-598808:-1:exon

position:598692:-1
position: 598692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:598808:-1
position: 598808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:598390-598536:-1:exon

position:598536:-1
position: 598536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:597523-598312:-1:exon

CNN2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CNN2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: calponin-2 isoform X2
translation: MSSSQFNKGPSYGLSAEVKNRLAQKYDPQKEAELRTWIESVTGQQIGPDFQKGLKDGVILCELMNKLQPNAVRKINRSAQNWHQLENLSNFIKAMASYGMNPVDLFEANDLFESGNLTQVQVSLLALAGMAKTKGMQSGVDIGVKYSEKQQRNFDEAKMKAGQCVIGLQMGTNKCASQSGMTAYGTRRHLYDPKNQILPPMDHSTISLQMGTNKCASQVGMTAPGTRRHIYDAKMGLEKCDNSSMSLQMGSNQGANQSGQVFGLGRQIYDPKYCPQGGQPEGGDTACEPGADPPGYHYYHQEESC
SIO_010081: CNN2
subclass of: SO_0000673
so part of: CNN2
location: complement(join(598049..598312,598390..598536,598692..598808,598912..599049,599130..599196,599491..599612,602350..602412))
location: region:598049-602412:-1
so has part: feature:602350-602412:-1:exon
so has part: feature:599491-599612:-1:exon
so has part: feature:599130-599196:-1:exon
so has part: feature:598912-599049:-1:exon
so has part: feature:598692-598808:-1:exon
so has part: feature:598390-598536:-1:exon
so has part: feature:598049-598312:-1:exon

XP_040393614.1
type: Protein
SIO_000068: ncbiprotein

position:598049:-1
position: 598049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:602412:-1
position: 602412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:602350-602412:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:599491-599612:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:599130-599196:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:598912-599049:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:598692-598808:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:598390-598536:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:598049-598312:-1:exon

CNN2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8869
gene: CNN2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: calponin-2 isoform X1
translation: MSSSQFNKGPSYGLSAEVKNRLAQKYDPQKEAELRTWIESVTGQQIGPDFQKGLKDGVILCELMNKLQPNAVRKINRSAQNWHQLENLSNFIKAMASYGMNPVDLFEANDLFESGNLTQVQVSLLALAGMVRARGRGTGWGHRGCGPWGVIRDPPLLPRHPSRAGQDQGDAERRGHRRQVLGEAAAELRRGQDEGRAVRDRAAGGLPPRDGEPPAPTAVVGVWGVPCGVPAAHPMGMGQSPRRAVPGSHRAPLRQMGTNKCASQSGMTAYGTRRHLYDPKNQILPPMDHSTISLQMGTNKCASQVGMTAPGTRRHIYDAKMGLEKCDNSSMSLQMGSNQGANQSGQVFGLGRQIYDPKYCPQGGQPEGGDTACEPGADPPGYHYYHQEESC
SIO_010081: CNN2
subclass of: SO_0000673
so part of: CNN2
location: complement(join(598049..598312,598390..599049,599130..599196,599491..599612,602350..602412))
location: region:598049-602412:-1
so has part: feature:602350-602412:-1:exon
so has part: feature:599491-599612:-1:exon
so has part: feature:599130-599196:-1:exon
so has part: feature:598390-599049:-1:exon
so has part: feature:598049-598312:-1:exon

XP_040393613.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:602350-602412:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:599491-599612:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:599130-599196:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:598390-599049:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:598049-598312:-1:exon

ARHGAP45
type: Gene
subclass of: SO_0000704
RO_0002162: 8869
gene: ARHGAP45
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 603014..622673
location: region:603014-622673:1
so has part: feature:603014-622673:1:exon
subclass of: SO_0000010

121060150
type: Gene
SIO_000068: ncbigene

position:603014:1
position: 603014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:622673:1
position: 622673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:603014-622673:1:exon

ARHGAP45
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: ARHGAP45
product: Rho GTPase activating protein 45, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 560 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_040537663.1
SIO_010081: ARHGAP45
subclass of: SO_0000673
so part of: ARHGAP45
location: join(603014..603149,603588..603813,605682..606012,607660..607803,609052..609136,609511..609583,609896..609968,610697..610834,611306..611370,611585..611695,612169..612249,612834..613013,613202..613339,613539..613729,613834..613991,614404..614481,614888..614989,615375..615538,616073..616261,616646..616783,617995..618236,618369..618630,619404..619506,619963..622673)
location: region:603014-622673:1
so has part: feature:603014-603149:1:exon
so has part: feature:603588-603813:1:exon
so has part: feature:605682-606012:1:exon
so has part: feature:607660-607803:1:exon
so has part: feature:609052-609136:1:exon
so has part: feature:609511-609583:1:exon
so has part: feature:609896-609968:1:exon
so has part: feature:610697-610834:1:exon
so has part: feature:611306-611370:1:exon
so has part: feature:611585-611695:1:exon
so has part: feature:612169-612249:1:exon
so has part: feature:612834-613013:1:exon
so has part: feature:613202-613339:1:exon
so has part: feature:613539-613729:1:exon
so has part: feature:613834-613991:1:exon
so has part: feature:614404-614481:1:exon
so has part: feature:614888-614989:1:exon
so has part: feature:615375-615538:1:exon
so has part: feature:616073-616261:1:exon
so has part: feature:616646-616783:1:exon
so has part: feature:617995-618236:1:exon
so has part: feature:618369-618630:1:exon
so has part: feature:619404-619506:1:exon
so has part: feature:619963-622673:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:603014-603149:1:exon

position:603149:1
position: 603149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:603588-603813:1:exon

position:603588:1
position: 603588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:603813:1
position: 603813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:605682-606012:1:exon

position:605682:1
position: 605682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:606012:1
position: 606012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:607660-607803:1:exon

position:607660:1
position: 607660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:607803:1
position: 607803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:609052-609136:1:exon

position:609052:1
position: 609052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:609136:1
position: 609136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:609511-609583:1:exon

position:609511:1
position: 609511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:609583:1
position: 609583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:609896-609968:1:exon

position:609896:1
position: 609896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:609968:1
position: 609968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:610697-610834:1:exon

position:610697:1
position: 610697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:610834:1
position: 610834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:611306-611370:1:exon

position:611306:1
position: 611306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:611370:1
position: 611370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:611585-611695:1:exon

position:611585:1
position: 611585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:611695:1
position: 611695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:612169-612249:1:exon

position:612169:1
position: 612169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:612249:1
position: 612249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:612834-613013:1:exon

position:612834:1
position: 612834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:613013:1
position: 613013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:613202-613339:1:exon

position:613202:1
position: 613202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:613339:1
position: 613339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:613539-613729:1:exon

position:613539:1
position: 613539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:613729:1
position: 613729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:613834-613991:1:exon

position:613834:1
position: 613834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:613991:1
position: 613991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:614404-614481:1:exon

position:614404:1
position: 614404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:614481:1
position: 614481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:614888-614989:1:exon

position:614888:1
position: 614888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:614989:1
position: 614989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:615375-615538:1:exon

position:615375:1
position: 615375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:615538:1
position: 615538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:616073-616261:1:exon

position:616073:1
position: 616073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:616261:1
position: 616261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:616646-616783:1:exon

position:616646:1
position: 616646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:616783:1
position: 616783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:617995-618236:1:exon

position:617995:1
position: 617995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:618236:1
position: 618236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:618369-618630:1:exon

position:618369:1
position: 618369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:618630:1
position: 618630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:619404-619506:1:exon

position:619404:1
position: 619404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:619506:1
position: 619506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:619963-622673:1:exon

position:619963:1
position: 619963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ARHGAP45
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8869
gene: ARHGAP45
product: Rho GTPase activating protein 45, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 558 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_040537664.1
SIO_010081: ARHGAP45
subclass of: SO_0000673
so part of: ARHGAP45
location: join(603345..603813,605682..606012,607660..607803,609052..609136,609511..609583,609896..609968,610697..610834,611306..611370,611585..611695,612169..612249,612834..613013,613202..613339,613539..613729,613834..613991,614404..614481,614888..614989,615375..615538,616073..616261,616646..616783,617995..618236,618369..618630,619404..619506,619963..622673)
location: region:603345-622673:1
so has part: feature:603345-603813:1:exon
so has part: feature:605682-606012:1:exon
so has part: feature:607660-607803:1:exon
so has part: feature:609052-609136:1:exon
so has part: feature:609511-609583:1:exon
so has part: feature:609896-609968:1:exon
so has part: feature:610697-610834:1:exon
so has part: feature:611306-611370:1:exon
so has part: feature:611585-611695:1:exon
so has part: feature:612169-612249:1:exon
so has part: feature:612834-613013:1:exon
so has part: feature:613202-613339:1:exon
so has part: feature:613539-613729:1:exon
so has part: feature:613834-613991:1:exon
so has part: feature:614404-614481:1:exon
so has part: feature:614888-614989:1:exon
so has part: feature:615375-615538:1:exon
so has part: feature:616073-616261:1:exon
so has part: feature:616646-616783:1:exon
so has part: feature:617995-618236:1:exon
so has part: feature:618369-618630:1:exon
so has part: feature:619404-619506:1:exon
so has part: feature:619963-622673:1:exon

position:603345:1
position: 603345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:603345-603813:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:605682-606012:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:607660-607803:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:609052-609136:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:609511-609583:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:609896-609968:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:610697-610834:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:611306-611370:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:611585-611695:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:612169-612249:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:612834-613013:1:exon