Cygnus atratus isolate AKBS03 ecotype Queensland, Australia chromosome 32, CAtr_DNAZoo_HiC_assembly, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM044828.1.\nAssembly name: CAtr_DNAZoo_HiC_assembly\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by The University of Queensland on\n2022/08/03. The original whole-genome shotgun project has the\naccession JABXOC000000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: The University of Queensland\nAssembly Date :: 02-MAY-2021\nAssembly Method :: FALCON-Unzip v. 2019-12-18; FALCON v.\n 2019-12-18; SMRTLink v. v7.0.1; 3D-DNA\n pipeline (DNAzzo) v. 2021-05-02\nAssembly Name :: CAtr_DNAZoo_HiC_assembly\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 90.0x\nSequencing Technology :: PacBio Sequel; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Updated annotation\nAnnotation Name :: GCF_013377495.2-RS_2023_02\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 02/27/2023\n##Genome-Annotation-Data-END##
butyrophilin subfamily 3 member A2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
butyrophilin subfamily 2 member A2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
butyrophilin subfamily 3 member A3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 3 Proteins
deleted in malignant brain tumors 1 protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
deleted in malignant brain tumors 1 protein-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like; Derived by automated computational analysis using gene prediction method: Gnomon.
soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like
sulfotransferase 2B1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
zinc finger protein ZFP2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein ZFP2-like, transcript variant X1
COORDINATES: polyA evidence [ECO:0006239]
zinc finger protein ZFP2-like, transcript variant X3
zinc finger protein ZFP2-like, transcript variant X2
zinc finger protein ZFP2-like, transcript variant X5
zinc finger protein ZFP2-like, transcript variant X4
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; substituted 4 bases at 4 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: deleted in malignant brain tumors 1 protein-like
DNA ligase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
zinc finger protein 628-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein 628-like
uncharacterized serine/threonine-protein kinase SBK3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized serine/threonine-protein kinase SBK3-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
LOW QUALITY PROTEIN: uncharacterized serine/threonine-protein kinase SBK3-like
ATPase family AAA domain-containing protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
olfactory receptor 14C36-like; Derived by automated computational analysis using gene prediction method: Gnomon.