Cygnus atratus isolate AKBS03 ecotype Queensland, Australia chromosome 30, CAtr_DNAZoo_HiC_assembly, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM044826.1.\nAssembly name: CAtr_DNAZoo_HiC_assembly\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by The University of Queensland on\n2022/08/03. The original whole-genome shotgun project has the\naccession JABXOC000000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: The University of Queensland\nAssembly Date :: 02-MAY-2021\nAssembly Method :: FALCON-Unzip v. 2019-12-18; FALCON v.\n 2019-12-18; SMRTLink v. v7.0.1; 3D-DNA\n pipeline (DNAzzo) v. 2021-05-02\nAssembly Name :: CAtr_DNAZoo_HiC_assembly\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 90.0x\nSequencing Technology :: PacBio Sequel; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Updated annotation\nAnnotation Name :: GCF_013377495.2-RS_2023_02\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 02/27/2023\n##Genome-Annotation-Data-END##
notch receptor 3; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 4 bases in 4 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 4 bases in 4 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: neurogenic locus notch homolog protein 3
epoxide hydrolase 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: epoxide hydrolase 3-like
bromodomain containing 4; Derived by automated computational analysis using gene prediction method: Gnomon.
bromodomain containing 4, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 long SRA reads, 6 Proteins
bromodomain containing 4, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
bromodomain-containing protein 4 isoform X1
bromodomain containing 4, transcript variant X3
bromodomain-containing protein 4 isoform X2
uncharacterized LOC118261675; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 44 member 2; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 44 member 2, transcript variant X4
solute carrier family 44 member 2, transcript variant X2
solute carrier family 44 member 2, transcript variant X3
solute carrier family 44 member 2, transcript variant X1
choline transporter-like protein 2 isoform X4
choline transporter-like protein 2 isoform X3
choline transporter-like protein 2 isoform X2
choline transporter-like protein 2 isoform X1
adaptor related protein complex 1 subunit mu 2; Derived by automated computational analysis using gene prediction method: Gnomon.
adaptor related protein complex 1 subunit mu 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
adaptor related protein complex 1 subunit mu 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
A-kinase anchoring protein 8; Derived by automated computational analysis using gene prediction method: Gnomon.
A-kinase anchoring protein 8, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 long SRA reads, 1 Protein
A-kinase anchoring protein 8, transcript variant X12
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 long SRA reads
A-kinase anchoring protein 8, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 3 Proteins
A-kinase anchoring protein 8, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 long SRA reads, 3 Proteins
A-kinase anchoring protein 8, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 long SRA reads, 3 Proteins
A-kinase anchoring protein 8, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 long SRA reads, 1 Protein
A-kinase anchoring protein 8, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 long SRA reads
A-kinase anchoring protein 8, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 long SRA reads, 3 Proteins
A-kinase anchoring protein 8, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 3 Proteins
A-kinase anchoring protein 8, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 long SRA reads
A-kinase anchoring protein 8, transcript variant X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads
A-kinase anchoring protein 8, transcript variant X11
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 long SRA reads
olfactory receptor 10K1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 Proteins
guanylate-binding protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: guanylate-binding protein 1-like
PDZ domain-containing protein GIPC1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
6-phosphogluconolactonase; Derived by automated computational analysis using gene prediction method: Gnomon.
solute carrier family 27 member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
long-chain fatty acid transport protein 1
nucleoredoxin like 1; Derived by automated computational analysis using gene prediction method: Gnomon.
GEM interacting protein; Derived by automated computational analysis using gene prediction method: Gnomon.
GEM interacting protein, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 long SRA reads, 14 Proteins
GEM interacting protein, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 14 Proteins
GEM interacting protein, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 81 long SRA reads, 13 Proteins
lysophosphatidic acid receptor 2; Derived by automated computational analysis using gene prediction method: Gnomon.
lysophosphatidic acid receptor 2, transcript variant X2
lysophosphatidic acid receptor 2, transcript variant X1
lysophosphatidic acid receptor 2 isoform X1
lysophosphatidic acid receptor 2 isoform X2
PBX homeobox 4; Derived by automated computational analysis using gene prediction method: Gnomon.
pre-B-cell leukemia transcription factor 4
DSN1 component of MIS12 kinetochore complex; Derived by automated computational analysis using gene prediction method: Gnomon.
DSN1 component of MIS12 kinetochore complex
kinetochore-associated protein DSN1 homolog
multivesicular body subunit 12A; Derived by automated computational analysis using gene prediction method: Gnomon.
multivesicular body subunit 12A, transcript variant X1
multivesicular body subunit 12A, transcript variant X2
multivesicular body subunit 12A isoform X1
multivesicular body subunit 12A isoform X2
ATPase 13A1; Derived by automated computational analysis using gene prediction method: Gnomon.
endoplasmic reticulum transmembrane helix translocase
coiled-coil-helix-coiled-coil-helix domain containing 5; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil-helix-coiled-coil-helix domain containing 5, transcript variant X1
coiled-coil-helix-coiled-coil-helix domain containing 5, transcript variant X3
coiled-coil-helix-coiled-coil-helix domain containing 5, transcript variant X4
coiled-coil-helix-coiled-coil-helix domain containing 5, transcript variant X2
coiled-coil-helix-coiled-coil-helix domain containing 5, transcript variant X6
coiled-coil-helix-coiled-coil-helix domain containing 5, transcript variant X5
coiled-coil-helix-coiled-coil-helix domain-containing protein 5 isoform X1
coiled-coil-helix-coiled-coil-helix domain-containing protein 5 isoform X2
LIM homeobox transcription factor 1-alpha-like; Derived by automated computational analysis using gene prediction method: Gnomon.
LIM homeobox transcription factor 1-alpha-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
hepatic lectin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
F-box and leucine rich repeat protein 12; Derived by automated computational analysis using gene prediction method: Gnomon.
F-box and leucine rich repeat protein 12
ubiquitin like 5; Derived by automated computational analysis using gene prediction method: Gnomon.
peptidylprolyl cis/trans isomerase, NIMA-interacting 1; Derived by automated computational analysis using gene prediction method: Gnomon.
peptidylprolyl cis/trans isomerase, NIMA-interacting 1
peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
uncharacterized LOC126913603; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC126913603, transcript variant X2
uncharacterized LOC126913603, transcript variant X1
microtubule-associated proteins 1A/1B light chain 3C-like; Derived by automated computational analysis using gene prediction method: Gnomon.
microtubule-associated proteins 1A/1B light chain 3C-like
olfactomedin 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
collagen type V alpha 3 chain; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 87 Proteins
retinol dehydrogenase 8; Derived by automated computational analysis using gene prediction method: Gnomon.
peter pan homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
peter pan homolog, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 55 long SRA reads, 13 Proteins
peter pan homolog, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 long SRA reads
purinergic receptor P2Y11; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 3 subunit G; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 3 subunit G
DNA methyltransferase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
DNA methyltransferase 1, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 long SRA reads, 1 Protein
DNA methyltransferase 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 long SRA reads, 3 Proteins
DNA methyltransferase 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 long SRA reads, 1 Protein
DNA methyltransferase 1, transcript variant X4
DNA methyltransferase 1, transcript variant X6
DNA methyltransferase 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 2 Proteins
DNA methyltransferase 1, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 long SRA reads, 1 Protein
DNA (cytosine-5)-methyltransferase 1 isoform X3
DNA (cytosine-5)-methyltransferase 1 isoform X2
DNA (cytosine-5)-methyltransferase 1 isoform X6
DNA (cytosine-5)-methyltransferase 1 isoform X5
DNA (cytosine-5)-methyltransferase 1 isoform X4
DNA (cytosine-5)-methyltransferase 1 isoform X1
DNA (cytosine-5)-methyltransferase 1 isoform X7
sphingosine-1-phosphate receptor 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 23 Proteins