Desulfosarcina ovata subsp. sediminis strain 28bB2T plasmid Do28_2, complete sequence.
type: Entry
definition: Desulfosarcina ovata subsp. sediminis strain 28bB2T plasmid Do28_2, complete sequence.
sequence version: NZ_AP021878.1
sequence date: 2022-12-23
sequence: sequence
division: CON
label: NZ_AP021878.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00190780
keyword: RefSeq
source: Desulfosarcina ovata subsp. sediminis
organism: Desulfosarcina ovata subsp. sediminis
taxonomy: Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfosarcina.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP021878.1.\nAnnotated at DFAST https://dfast.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler ver 0.4.7\nGenome Coverage :: 620x\nSequencing Technology :: Illumina NextSeq; Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/23/2022 03:54:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,352\nCDSs (total) :: 7,290\nGenes (coding) :: 7,215\nCDSs (with protein) :: 7,215\nGenes (RNA) :: 62\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 4\nPseudo Genes (total) :: 75\nCDSs (without protein) :: 75\nPseudo Genes (ambiguous residues) :: 0 of 75\nPseudo Genes (frameshifted) :: 10 of 75\nPseudo Genes (incomplete) :: 65 of 75\nPseudo Genes (internal stop) :: 10 of 75\nPseudo Genes (multiple problems) :: 9 of 75\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 16418
topology: circular
so has quality: SO_0000988
location: 1..16418
location: region:1-16418:1
RO_0002162: 885957

NZ_AP021878
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00190780
type: BioSample
SIO_000068: biosample

1
title: Proposal of Desulfosarcina ovata subsp. sediminis subsp. nov., a novel toluene-degrading sulfate-reducing bacterium isolated from tidal flat sediment of Tokyo Bay
author: Watanabe, M.
author: Higashioka, Y.
author: Kojima, H.
author: Fukui, M.
journal: Syst. Appl. Microbiol. 126109 (2020)
comments: DOI:10.1016/j.syapm.2020.126109 Publication Status: Online-Only

2
title: Direct Submission
author: Watanabe, M.
author: Kojima, H.
author: Fukui, M.
journal: Submitted (07-NOV-2019) Contact:Miho Watanabe Akita Prefectural University, Faculty of Bioresource Sciences, Department of Biological Environment; 241-438 Kaidobata-Nishi, Nakano, Shimoshinjo, Akita 010-0195, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16418:1
position: 16418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16418:1:source
so part of: sequence
organism: Desulfosarcina ovata subsp. sediminis
mol type: genomic DNA
strain: 28bB2T
isolation source: shallow marine sediment
sub species: sediminis
type material: type strain of Desulfosarcina ovata subsp. sediminis
plasmid: Do28_2
country: Japan:Tokyo;Tokyo Bay
note: plasmid

885957
type: Taxonomy
SIO_000068: taxonomy

GN113_RS36610
type: Gene
subclass of: SO_0000704
RO_0002162: 885957
locus tag: GN113_RS36610
so part of: sequence
location: join(16066..16418,1..4)
location: region:1-16418:1
so has part: feature:16066-16418:1:exon
so has part: feature:1-4:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:16066-16418:1:exon

position:16066:1
position: 16066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-4:1:exon

position:4:1
position: 4
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GN113_RS36610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 885957
locus tag: GN113_RS36610
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNSQKRTSLGLEDDQIDLEELTGIGQERPQLSEKQQKALIKAGEKTGFVSRKPTVRRRISPYSAQFGGKCREGIKPLFREIASRLDIYENQAIELAILALIEKEGFEDLKAQYMELVK
SIO_010081: GN113_RS36610
subclass of: SO_0000673
so part of: GN113_RS36610
location: join(16066..16418,1..4)
location: region:1-16418:1
so has part: feature:16066-16418:1:exon
so has part: feature:1-4:1:exon

WP_155326398.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16066-16418:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-4:1:exon

GN113_RS37110
type: Gene
subclass of: SO_0000704
RO_0002162: 885957
locus tag: GN113_RS37110
old locus tag: DSCO28_73710
so part of: sequence
location: 1..1071
location: region:1-1071:1
so has part: feature:1-1071:1:exon
subclass of: SO_0000010

position:1071:1
position: 1071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1071:1:exon

GN113_RS37110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 885957
locus tag: GN113_RS37110
old locus tag: DSCO28_73710
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013646164.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKKRKEPEQRKPPIKPVKCIQLELFSDFVSNDKDTISNTVEFWESIPKYFFTPYQVEKLRTEKGHADPYEWSYTFNSIPCAVEIQPALIKQRDGGYKAFFPGVTEELVEEALKKILTDQQYGIHDPEQPETWVKFSLRMVAKELRDRGRTRSLDQIKHAIKVMSGCILTFYKDGKEIWQGSILQDLLTSDREEYLKDSNSLHAARLPLFISHAINQLEYRQFNYDRLMRCNDQLTRWIYKKLIHRYVNANHNNDYHFSYSSLERDSGLLQQGRATDNRKKVIKALKELASRDVLKEYVVEERKEGQKIIDIIYTVRPSFNFVREQKAANSRARDGLVKAGKKGTKPRQITLEQTP
SIO_010081: GN113_RS37110
subclass of: SO_0000673
so part of: GN113_RS37110
location: 1..1071
location: region:1-1071:1
so has part: feature:1-1071:1:exon

WP_155326399.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1071:1:exon

GN113_RS36620
type: Gene
subclass of: SO_0000704
RO_0002162: 885957
locus tag: GN113_RS36620
old locus tag: DSCO28_73720
so part of: sequence
location: 1626..1856
location: region:1626-1856:1
so has part: feature:1626-1856:1:exon
subclass of: SO_0000010

position:1626:1
position: 1626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1856:1
position: 1856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1626-1856:1:exon

GN113_RS36620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 885957
locus tag: GN113_RS36620
old locus tag: DSCO28_73720
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKLLNSCEKLNKATEEIFESYRRGEDYLIQRKWLLAAFKGLFDVADACGVAVDDDVARILDLREERQQLKHDGPS
SIO_010081: GN113_RS36620
subclass of: SO_0000673
so part of: GN113_RS36620
location: 1626..1856
location: region:1626-1856:1
so has part: feature:1626-1856:1:exon

WP_155326381.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1626-1856:1:exon

GN113_RS36625
type: Gene
subclass of: SO_0000704
RO_0002162: 885957
locus tag: GN113_RS36625
old locus tag: DSCO28_73730
so part of: sequence
location: 2291..2524
location: region:2291-2524:1
so has part: feature:2291-2524:1:exon
subclass of: SO_0000010

position:2291:1
position: 2291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2524:1
position: 2524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2291-2524:1:exon

GN113_RS36625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 885957
locus tag: GN113_RS36625
old locus tag: DSCO28_73730
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MATQTKLMVKRRIKIYQVALSQKKKQIRKLEGIDTPKSYVEKAEIQKEIDELEIKINESIEKLENTKYAYKPDLFNG
SIO_010081: GN113_RS36625
subclass of: SO_0000673
so part of: GN113_RS36625
location: 2291..2524
location: region:2291-2524:1
so has part: feature:2291-2524:1:exon

WP_155326382.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2291-2524:1:exon

GN113_RS36630
type: Gene
subclass of: SO_0000704
RO_0002162: 885957
locus tag: GN113_RS36630
old locus tag: DSCO28_73740
so part of: sequence
location: 2540..5224
location: region:2540-5224:1
so has part: feature:2540-5224:1:exon
subclass of: SO_0000010

position:2540:1
position: 2540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5224:1
position: 5224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2540-5224:1:exon

GN113_RS36630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 885957
locus tag: GN113_RS36630
old locus tag: DSCO28_73740
inference: COORDINATES: protein motif:HMM:NF014581.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MGFFRKHTPQGERKLGLRFLFYHFFSVTCALVFVLMFTFPFLGQSIQNLSRFPLSEGIPDEPLKPVPLTLQNLEAWARSEAENKYPLVEILPHEIPFHFRPVFKEEEKQTTDDWTEVLRKRFGTKQEETEEYKRKRLLDRLNQAHKEEEKQTTDDWTEVLRKRFGEEHAGEKTPSIGLWGSLIKKNGQQKTEKETSYETLVKHLQKKINDKYNNKMAHNKEQLNKRRAFIAENANQKQLDYWNKRYRREWKKEHEKWEDKKWDIMFSNFFDASRIHHKSLSTILFLAGFSLLTWFLLGGGKYSLMDLPGGEYGHIISIYFFVPYVLSLIFLKTDFGNVINCAFFFGVPILSALVIPYFVIVKELLKETDFYQELFIEGKGREIARWGSFRSFHRHDISQRFRESRQYISKHKESSFYLGTTKWYYDYKIPMLGQRHIGTKSEQHLIVVAGTGSGKSRDILNNNTLTYSGGMVIFDTKGEHVEISYGKRSRFAKAYVIDPWGKNKLGISTAHWNPLAGIDINSDNARSRIERICESIVIKESDGAGERPVDTHFREAPQQILRGFIAHVLSTLPEEYHNLPTVTNLMFKGTLEGGNFDPDEMDNVINAMSSNTVCQGAPIEAAATIAKLQGSEESGIWTTLQRSLNWINDPMVRKVISGETSFSFRECKLNDATVYLVIPENFLIQQRRFIRLFYQTAFDELDEHYTPQPNEHKRRVAFIFDEFEVLGTFEAARQAALRKRSSFIKCVFVVQNFGQFKANYTNVQDFFGNCDKVFFGIDRSDTEILKKLCESLGKYTHVEYVRGEPVEKISDLMAESELANFMNARRKGQLFIPVKGLQLKMKRAHYDDNFWEHKRGGIKAFLYKRVPNSEKLRSFIEKLKTDVSSWIERQGQRS
SIO_010081: GN113_RS36630
subclass of: SO_0000673
so part of: GN113_RS36630
location: 2540..5224
location: region:2540-5224:1
so has part: feature:2540-5224:1:exon

WP_155326383.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2540-5224:1:exon

GN113_RS36635
type: Gene
subclass of: SO_0000704
RO_0002162: 885957
locus tag: GN113_RS36635
old locus tag: DSCO28_73750
so part of: sequence
location: complement(5212..6150)
location: region:5212-6150:-1
so has part: feature:5212-6150:-1:exon
subclass of: SO_0000010

position:5212:-1
position: 5212
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6150:-1
position: 6150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5212-6150:-1:exon

GN113_RS36635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 885957
locus tag: GN113_RS36635
old locus tag: DSCO28_73750
inference: COORDINATES: protein motif:HMM:NF024554.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3991 and TOPRIM domain-containing protein
translation: MDELERFKIDINLSEYAASCGYELDRRESSRNSAIMRHANGDKIIIARGLDGHWIYFSVRDDADNGTIIDFVQKRENSSLGITRKILRPWIGGGDPPKRPLKGSFAVNVEKVSKDIAKVLASLGSMQAVISHNYLEGRGISPNILADNRFTGRLYIDGHHNAVFPHWNRSGVCGYEVKNRDFTGFAPGGEKGLWISKRGEPNQRLVIAESAIDALSHATLFPDPAARYASIGGKMNPEQPDLIEAAIKSLPEGGEVVAATDADEDGRKLALQIGGIAKKTGRAFSLQEPPEEGTDWNDHARPGPVILSIYDL
SIO_010081: GN113_RS36635
subclass of: SO_0000673
so part of: GN113_RS36635
location: complement(5212..6150)
location: region:5212-6150:-1
so has part: feature:5212-6150:-1:exon

WP_155326384.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5212-6150:-1:exon

GN113_RS36640
type: Gene
subclass of: SO_0000704
RO_0002162: 885957
locus tag: GN113_RS36640
so part of: sequence
location: complement(6200..6346)
location: region:6200-6346:-1
so has part: feature:6200-6346:-1:exon
subclass of: SO_0000010

position:6200:-1
position: 6200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6346:-1
position: 6346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6200-6346:-1:exon

GN113_RS36640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 885957
locus tag: GN113_RS36640
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGTYLEFSKKMQPSGEQGEVVIKTKSGHVAADSFTQPLEQLFFDIPYY
SIO_010081: GN113_RS36640
subclass of: SO_0000673
so part of: GN113_RS36640
location: complement(6200..6346)
location: region:6200-6346:-1
so has part: feature:6200-6346:-1:exon

WP_155326385.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6200-6346:-1:exon

GN113_RS36645
type: Gene
subclass of: SO_0000704
RO_0002162: 885957
locus tag: GN113_RS36645
old locus tag: DSCO28_t00560
so part of: sequence
location: 6524..6600
location: region:6524-6600:1
so has part: feature:6524-6600:1:exon
subclass of: SO_0000663

position:6524:1
position: 6524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6600:1
position: 6600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6524-6600:1:exon

GN113_RS36645
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 885957
locus tag: GN113_RS36645
old locus tag: DSCO28_t00560
product: tRNA-Val
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:6558..6560,aa:Val,seq:gac)
SIO_010081: GN113_RS36645
subclass of: SO_0000673
so part of: GN113_RS36645
location: 6524..6600
location: region:6524-6600:1
so has part: feature:6524-6600:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6524-6600:1:exon

GN113_RS36650
type: Gene
subclass of: SO_0000704
RO_0002162: 885957
locus tag: GN113_RS36650
old locus tag: DSCO28_73760
so part of: sequence
location: complement(6668..7030)
location: region:6668-7030:-1
so has part: feature:6668-7030:-1:exon
subclass of: SO_0000010

position:6668:-1
position: 6668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7030:-1
position: 7030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6668-7030:-1:exon

GN113_RS36650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 885957
locus tag: GN113_RS36650
old locus tag: DSCO28_73760
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: METETYGFKATIKPKSNGVLTVQFKTETDDTLKKLMEQEERFKEKLRSAKKQVAAREAELQKKRALVLGKAVIAEIEQNPDVWKIISPIVERHIKTAKDKKMFDFVNPSPTADEHDQGGT
SIO_010081: GN113_RS36650
subclass of: SO_0000673
so part of: GN113_RS36650
location: complement(6668..7030)
location: region:6668-7030:-1
so has part: feature:6668-7030:-1:exon

WP_155326386.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6668-7030:-1:exon

GN113_RS36655
type: Gene
subclass of: SO_0000704
RO_0002162: 885957
gene: mobC
locus tag: GN113_RS36655
old locus tag: DSCO28_73770
so part of: sequence
location: 7294..7614
location: region:7294-7614:1
so has part: feature:7294-7614:1:exon
subclass of: SO_0000010

position:7294:1
position: 7294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7614:1
position: 7614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7294-7614:1:exon

GN113_RS36655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 885957
gene: mobC
locus tag: GN113_RS36655
old locus tag: DSCO28_73770
inference: COORDINATES: protein motif:HMM:NF017524.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MENEAKQKRKAVMTPIRVSPSEKEKIRANAAAAGLSLSDFMRQACLDPIVVVKENAIDKDFVYHLIKIGNNINQLTKHANSLKMGYDSKRLNVLLDRLESIITKVL
SIO_010081: GN113_RS36655
subclass of: SO_0000673
so part of: GN113_RS36655
location: 7294..7614
location: region:7294-7614:1
so has part: feature:7294-7614:1:exon

WP_155326387.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7294-7614:1:exon

GN113_RS36660
type: Gene
subclass of: SO_0000704
RO_0002162: 885957
locus tag: GN113_RS36660
old locus tag: DSCO28_73780
so part of: sequence
location: 7619..9490
location: region:7619-9490:1
so has part: feature:7619-9490:1:exon
subclass of: SO_0000010

position:7619:1
position: 7619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9490:1
position: 9490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7619-9490:1:exon

GN113_RS36660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 885957
locus tag: GN113_RS36660
old locus tag: DSCO28_73780
inference: COORDINATES: protein motif:HMM:NF015397.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MIPKATRSGSFKDSIAYIMHDKGNLNASERVEWYETGNMLTKDPETAAKIMAWTDINADHIQQQFNAENGIEKASNGGAKRKYGAVYHLSFSWAKDENPDVETQKIYALEALKNLQLENNQYVMACHNDTEHSHIHVIANLTNHETGKRAQIWKSQRRLQKQALEYEKEHGIYCEERFKTAAELEKARIAHKITRAYELSDNSQSFKAAVEEEGFTLAKGRRGAVVLVDDKGKIQKLARQLKGIEKPTEALKNKLKGIDLANLPDAEQKAEEIRAKQADAQAPKGQPETETAKKSQNSHNVPKRKDAQSPVYDREAEEVERQKKLADAAAAVAKEKADAQVAKEKEQKRIEKFFREQRKAKFLRIKKHMAKKAAIEKRYFEEIEARIEKKTAESRKTWQIEKLTEDKKKAAEAFNVAAEEAKKRKNLWDWLTGKWKKAATDAEEAAQKLEATEKTLAERMSRFEADQRALEEYRIQKAKEFAEKYPKKPKKQVSQRKTVSLEKSNSHIKQRKGAVGKEKLRVDVADTTAPETPVFSKPVERPAAITQESGKKKSRNKLSLTDKIRATRAAEKGELGQEYKKMAEDELTAEDRQTIQDQWQEHSGLDLEDSQEQKKEIDRGLEL
SIO_010081: GN113_RS36660
subclass of: SO_0000673
so part of: GN113_RS36660
location: 7619..9490
location: region:7619-9490:1
so has part: feature:7619-9490:1:exon

WP_155326388.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7619-9490:1:exon

GN113_RS36665
type: Gene
subclass of: SO_0000704
RO_0002162: 885957
locus tag: GN113_RS36665
old locus tag: DSCO28_73790
so part of: sequence
location: 9588..9812
location: region:9588-9812:1
so has part: feature:9588-9812:1:exon
subclass of: SO_0000010

position:9588:1
position: 9588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9812:1
position: 9812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9588-9812:1:exon

GN113_RS36665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 885957
locus tag: GN113_RS36665
old locus tag: DSCO28_73790
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDGIKKDEAREWIIQKCNDAFTNDYEDWEGFDNPMTRSEMIAALDKCNNTWPGFEFRGHRIRNISKLHQAPHCE
SIO_010081: GN113_RS36665
subclass of: SO_0000673
so part of: GN113_RS36665
location: 9588..9812
location: region:9588-9812:1
so has part: feature:9588-9812:1:exon

WP_155326389.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9588-9812:1:exon

GN113_RS36670
type: Gene
subclass of: SO_0000704
RO_0002162: 885957
locus tag: GN113_RS36670
so part of: sequence
location: 10179..10694
location: region:10179-10694:1
so has part: feature:10179-10694:1:exon
subclass of: SO_0000010

position:10179:1
position: 10179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10694:1
position: 10694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10179-10694:1:exon

GN113_RS36670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 885957
locus tag: GN113_RS36670
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDYKALEKLKKIPIYLIPGCGKFGVPGMIKRHVAKLHKTSNEQWRLFAEGCLRNRYFRDYVLDRSTKCIACGKKHTDRSRIEQHHNDYLWHCIGDVLPEDSPDIQRKAVKGEFPHVPDCRQCRIDNPAHFNECQKRIYGVHAVCHERIHEKERYFRKKAAEKLKGDFDGVS
SIO_010081: GN113_RS36670
subclass of: SO_0000673
so part of: GN113_RS36670
location: 10179..10694
location: region:10179-10694:1
so has part: feature:10179-10694:1:exon

WP_155326390.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10179-10694:1:exon

GN113_RS36675
type: Gene
subclass of: SO_0000704
RO_0002162: 885957
locus tag: GN113_RS36675
old locus tag: DSCO28_73810
so part of: sequence
location: 10799..11056
location: region:10799-11056:1
so has part: feature:10799-11056:1:exon
subclass of: SO_0000010

position:10799:1
position: 10799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11056:1
position: 11056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10799-11056:1:exon

GN113_RS36675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 885957
locus tag: GN113_RS36675
old locus tag: DSCO28_73810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016781303.1
GO process: GO:0051983 - regulation of chromosome segregation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system ParD family antitoxin
translation: MGTTRKTITVTDKQDNWIKAQIAAGEFTNDSEYIRDLIRRDQARHADLEAIRAALIEAEQSGKPQPFDGDLFKQEMIAKHGEHKG
SIO_010081: GN113_RS36675
subclass of: SO_0000673
so part of: GN113_RS36675
location: 10799..11056
location: region:10799-11056:1
so has part: feature:10799-11056:1:exon

WP_155326391.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10799-11056:1:exon

GN113_RS36680
type: Gene
subclass of: SO_0000704
RO_0002162: 885957
locus tag: GN113_RS36680
old locus tag: DSCO28_73820
so part of: sequence
location: 11037..11339
location: region:11037-11339:1
so has part: feature:11037-11339:1:exon
subclass of: SO_0000010

position:11037:1
position: 11037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11339:1
position: 11339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11037-11339:1:exon

GN113_RS36680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 885957
locus tag: GN113_RS36680
old locus tag: DSCO28_73820
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008015847.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MASTKAEYRLSPKAVEDMEAIWLYSLTHWGAKQTGRYIDDVIGAFELLAQNPEIGTACNHIRQNYRRYPIKRHVVYYRVTDYGIEVMRILHDRMLSTRHL
SIO_010081: GN113_RS36680
subclass of: SO_0000673
so part of: GN113_RS36680
location: 11037..11339
location: region:11037-11339:1
so has part: feature:11037-11339:1:exon

WP_155326392.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11037-11339:1:exon

GN113_RS36685
type: Gene
subclass of: SO_0000704
RO_0002162: 885957
locus tag: GN113_RS36685
old locus tag: DSCO28_73830
so part of: sequence
location: 11485..12057
location: region:11485-12057:1
so has part: feature:11485-12057:1:exon
subclass of: SO_0000010

position:11485:1
position: 11485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12057:1
position: 12057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11485-12057:1:exon

GN113_RS36685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 885957
locus tag: GN113_RS36685
old locus tag: DSCO28_73830
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009502575.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MPDLIDTQGRRLYLTSDERAAFLAAAKKAPREVRTFCTVLHDTGARISEALALAPESIDFAAGAIIFETLKKRRKGIFRAVPVPAATLDTLDMVHALKESQNRKAQAFIWSWSRKTAYTRVKEVLQAAGIADGPHKCPKGLRHGYGVHAINSGVPLNMLSKWMGHASLEVTAIYANALGEEQRSIAARMW
SIO_010081: GN113_RS36685
subclass of: SO_0000673
so part of: GN113_RS36685
location: 11485..12057
location: region:11485-12057:1
so has part: feature:11485-12057:1:exon

WP_155326393.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11485-12057:1:exon

GN113_RS36690
type: Gene
subclass of: SO_0000704
RO_0002162: 885957
locus tag: GN113_RS36690
so part of: sequence
location: complement(12416..12865)
location: region:12416-12865:-1
so has part: feature:12416-12865:-1:exon
subclass of: SO_0000010

position:12416:-1
position: 12416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12865:-1
position: 12865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12416-12865:-1:exon

GN113_RS36690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 885957
locus tag: GN113_RS36690
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006475836.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: very short patch repair endonuclease
translation: MAEDKEKRSQIMRAVKSRNTKPELFVRHLIHTSGYRYRLHRKDLPGKPDLVFISRRKVIFVHGCFWHGHGCRRGSRVPKTNQNYWVDKINRNIKRDKEIKKRLNEMGWSVLVIWECQLKNLEELIETINNFLGPCKKNNFQPPNQKGCL
SIO_010081: GN113_RS36690
subclass of: SO_0000673
so part of: GN113_RS36690
location: complement(12416..12865)
location: region:12416-12865:-1
so has part: feature:12416-12865:-1:exon

WP_155326394.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12416-12865:-1:exon

GN113_RS36695
type: Gene
subclass of: SO_0000704
RO_0002162: 885957
locus tag: GN113_RS36695
old locus tag: DSCO28_73840
so part of: sequence
location: complement(12865..13722)
location: region:12865-13722:-1
so has part: feature:12865-13722:-1:exon
subclass of: SO_0000010

position:13722:-1
position: 13722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12865-13722:-1:exon

GN113_RS36695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 885957
locus tag: GN113_RS36695
old locus tag: DSCO28_73840
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020818299.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVIPCEKNKKLRSQIEKYAETLKCEAHRLGDHGLSEAEFYNSGVFRGAIERIRGQFSATMREKREFVQHVLNHMQDQGFIEDWESAGEANRHDYSIKLNSGKTAIIELKGCLDGNNTNIFERPPHAHEFIIWSVCTNPGADPRHNAWSGIHTRLSAEIISRNQRIDGIMIWDMVCGTIGRPCPKIKDSPERVTDVGPFHLTPPCIYMFPATIPSPRNNPHPESQALEDVELLKAFHTCFNGDPSEINYVDFEVKYHGTETLRTTVVKRAGAVQQESGATAIRRT
SIO_010081: GN113_RS36695
subclass of: SO_0000673
so part of: GN113_RS36695
location: complement(12865..13722)
location: region:12865-13722:-1
so has part: feature:12865-13722:-1:exon

WP_155326395.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12865-13722:-1:exon

GN113_RS36700
type: Gene
subclass of: SO_0000704
RO_0002162: 885957
locus tag: GN113_RS36700
so part of: sequence
location: complement(13719..14861)
location: region:13719-14861:-1
so has part: feature:13719-14861:-1:exon
subclass of: SO_0000010

position:13719:-1
position: 13719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14861:-1
position: 14861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13719-14861:-1:exon

GN113_RS36700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 885957
locus tag: GN113_RS36700
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016050494.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA cytosine methyltransferase
translation: MNNFYEFFAGGGMVRAGLGADWRCVFANDFDNKKSKTYIKNWGSNELKTADIKTLQSKHIPGQADLAWASFPCQDLSLAGAGAGLKGDRSGTFWPFWELMLSLISEDRAPKIIVLENVCGTLTSHGGKDFAAICSTFRRAGYRFGALEIDAALFLPHSRPRLFMIGVQNDAYMPANLTEGEPSPQWHPRRLLTAFKKLSKKEKANWVWWCLPTPPLRTARFADIIEDNPSSVAWHNRAETEKLLKMMSSINRKKVEEAKNAKKRMVGAIYKRTRTDENGFKVQRAEVRFDDIAGCLRTPAGGSSRQLILVVDGKSIKSRLISTRETARLMGLDDNYVLPENYNEAYHLTGDGVVVPVVQYLAKHIFGPFLIENEVGRAAA
SIO_010081: GN113_RS36700
subclass of: SO_0000673
so part of: GN113_RS36700
location: complement(13719..14861)
location: region:13719-14861:-1
so has part: feature:13719-14861:-1:exon

WP_155326396.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13719-14861:-1:exon

GN113_RS36705
type: Gene
subclass of: SO_0000704
RO_0002162: 885957
locus tag: GN113_RS36705
old locus tag: DSCO28_73860
so part of: sequence
location: 15351..16064
location: region:15351-16064:1
so has part: feature:15351-16064:1:exon
subclass of: SO_0000010

position:15351:1
position: 15351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16064:1
position: 16064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15351-16064:1:exon

GN113_RS36705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 885957
locus tag: GN113_RS36705
old locus tag: DSCO28_73860
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013648932.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MPVIVFASSKGGAGKTTAAVVLACELARQGKAKNIGVSLIDADPNQHSAAWAKLDGKPDNIALFENVTEDNILDVIEEAQQKTPFVLVDLEGVASSAVVGAVSRADLVIIPCQPSQNDAKEAAKTIKTIKYGARISGREIPFSVMFTRLSAAIITKTGKHLAAEFDGAGVDVFKCSLIDREAFKSIFSFGGTVNDLEASSNKAQSSIDKAAENARLFAEEVKQHLKRSLQPSKQEVA
SIO_010081: GN113_RS36705
subclass of: SO_0000673
so part of: GN113_RS36705
location: 15351..16064
location: region:15351-16064:1
so has part: feature:15351-16064:1:exon

WP_155326397.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15351-16064:1:exon