Enterobacter soli plasmid pENTAS02, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter.
Complete sequence of plasmid 2 of Enterobacter asburiae LF7a
Submitted (24-AUG-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP003028.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4087281\nSource DNA and organism available from Daniel van der Lelie\n(vdlelied@rti.org)\nContacts: Daniel van der Lelie (vdlelied@rti.org)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe organism was changed from 'Enterobacter asburiae LF7a' to\n'Enterobacter soli' in April 2019.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Taxonomic-Update-Statistics-START##\nThis Genome (query) :: GCA_000224675.1\nCurrent Name :: Enterobacter soli\nPrevious Name :: Enterobacter asburiae LF7a\nDate Updated :: 2019-04-22\nAnalysis Type :: Average Nucleotide Identity (ANI)\nAnalysis 1 (A1) :: Query vs. TYPE genome for current name\nA1 Genome (subject) :: GCA_001654845.1\nA1 Name :: Enterobacter soli\nA1 ANI :: 99.99844%\nA1 Query Coverage :: 98.93%\nA1 Subject Coverage :: 99.95%\nAnalysis 2 (A2) :: Query vs. TYPE genome for previous name\nA2 Genome (subject) :: GCA_001521715.1\nA2 Name :: Enterobacter asburiae LF7a\nA2 ANI :: 86.90194%\nA2 Query Coverage :: 70.02%\nA2 Subject Coverage :: 73.02%\n##Taxonomic-Update-Statistics-END##\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Enterobacter asburiae LF7a\ncollection_date :: Missing\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Missing\nenvironment :: Missing\nnum_replicons :: 3\nref_biomaterial :: Missing\nbiotic_relationship :: Missing\ntrophic_level :: Missing\nrel_to_oxygen :: Missing\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi10731\nGene Calling Method :: Prodigal 1.4, GenePRIMP\nCell Shape :: Rod-shaped\nMotility :: Nonmotile\nGram Staining :: Gram-\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3\nGenome Coverage :: 30x\nSequencing Technology :: 454/Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/02/2023 01:59:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,790\nCDSs (total) :: 4,678\nGenes (coding) :: 4,621\nCDSs (with protein) :: 4,621\nGenes (RNA) :: 112\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 83\nncRNAs :: 7\nPseudo Genes (total) :: 57\nCDSs (without protein) :: 57\nPseudo Genes (ambiguous residues) :: 0 of 57\nPseudo Genes (frameshifted) :: 31 of 57\nPseudo Genes (incomplete) :: 27 of 57\nPseudo Genes (internal stop) :: 10 of 57\nPseudo Genes (multiple problems) :: 10 of 57\nPseudo Genes (short protein) :: 1 of 57\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008500389.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
ogr/Delta-like zinc finger family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006117906.1
COORDINATES: similar to AA sequence:RefSeq:WP_011094145.1
COORDINATES: similar to AA sequence:RefSeq:WP_003835886.1
COORDINATES: similar to AA sequence:RefSeq:WP_014072463.1
GO:0098003 - viral tail assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016940976.1
COORDINATES: similar to AA sequence:RefSeq:WP_014072464.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016032 - viral process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001761054.1
COORDINATES: similar to AA sequence:RefSeq:WP_010246494.1
GO:0098004 - virus tail fiber assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014884130.1
COORDINATES: similar to AA sequence:RefSeq:WP_000071715.1
GO:0044423 - virion component [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006117898.1
COORDINATES: similar to AA sequence:RefSeq:WP_014072470.1
COORDINATES: similar to AA sequence:RefSeq:WP_006117896.1
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006117895.1
COORDINATES: similar to AA sequence:RefSeq:WP_006117894.1
COORDINATES: similar to AA sequence:RefSeq:WP_001373667.1
COORDINATES: similar to AA sequence:RefSeq:WP_006820532.1
COORDINATES: similar to AA sequence:RefSeq:WP_004956562.1
COORDINATES: similar to AA sequence:RefSeq:WP_003835851.1
COORDINATES: similar to AA sequence:RefSeq:WP_016193212.1
COORDINATES: similar to AA sequence:RefSeq:WP_014072479.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0019069 - viral capsid assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016193214.1
GO:0019028 - viral capsid [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008500366.1
COORDINATES: similar to AA sequence:RefSeq:WP_015855478.1
COORDINATES: similar to AA sequence:RefSeq:WP_014072483.1
COORDINATES: similar to AA sequence:RefSeq:WP_019724771.1
COORDINATES: similar to AA sequence:RefSeq:WP_014072485.1
COORDINATES: similar to AA sequence:RefSeq:WP_000206224.1
GO:0004519 - endonuclease activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017411189.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000620902.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
Dam family site-specific DNA-(adenine-N6)-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_016246744.1
COORDINATES: similar to AA sequence:RefSeq:WP_016246743.1
COORDINATES: protein motif:HMM:NF027288.2
COORDINATES: similar to AA sequence:RefSeq:WP_000014504.1
COORDINATES: similar to AA sequence:RefSeq:WP_012304170.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008500352.1
COORDINATES: protein motif:HMM:NF012743.2
COORDINATES: similar to AA sequence:RefSeq:WP_014072497.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]