Enterobacter soli plasmid pENTAS01, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter.
Complete sequence of plasmid 1 of Enterobacter asburiae LF7a
Submitted (24-AUG-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP003027.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4087281\nSource DNA and organism available from Daniel van der Lelie\n(vdlelied@rti.org)\nContacts: Daniel van der Lelie (vdlelied@rti.org)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe organism was changed from 'Enterobacter asburiae LF7a' to\n'Enterobacter soli' in April 2019.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Taxonomic-Update-Statistics-START##\nThis Genome (query) :: GCA_000224675.1\nCurrent Name :: Enterobacter soli\nPrevious Name :: Enterobacter asburiae LF7a\nDate Updated :: 2019-04-22\nAnalysis Type :: Average Nucleotide Identity (ANI)\nAnalysis 1 (A1) :: Query vs. TYPE genome for current name\nA1 Genome (subject) :: GCA_001654845.1\nA1 Name :: Enterobacter soli\nA1 ANI :: 99.99844%\nA1 Query Coverage :: 98.93%\nA1 Subject Coverage :: 99.95%\nAnalysis 2 (A2) :: Query vs. TYPE genome for previous name\nA2 Genome (subject) :: GCA_001521715.1\nA2 Name :: Enterobacter asburiae LF7a\nA2 ANI :: 86.90194%\nA2 Query Coverage :: 70.02%\nA2 Subject Coverage :: 73.02%\n##Taxonomic-Update-Statistics-END##\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Enterobacter asburiae LF7a\ncollection_date :: Missing\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Missing\nenvironment :: Missing\nnum_replicons :: 3\nref_biomaterial :: Missing\nbiotic_relationship :: Missing\ntrophic_level :: Missing\nrel_to_oxygen :: Missing\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi10731\nGene Calling Method :: Prodigal 1.4, GenePRIMP\nCell Shape :: Rod-shaped\nMotility :: Nonmotile\nGram Staining :: Gram-\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3\nGenome Coverage :: 30x\nSequencing Technology :: 454/Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/02/2023 01:59:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,790\nCDSs (total) :: 4,678\nGenes (coding) :: 4,621\nCDSs (with protein) :: 4,621\nGenes (RNA) :: 112\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 83\nncRNAs :: 7\nPseudo Genes (total) :: 57\nCDSs (without protein) :: 57\nPseudo Genes (ambiguous residues) :: 0 of 57\nPseudo Genes (frameshifted) :: 31 of 57\nPseudo Genes (incomplete) :: 27 of 57\nPseudo Genes (internal stop) :: 10 of 57\nPseudo Genes (multiple problems) :: 10 of 57\nPseudo Genes (short protein) :: 1 of 57\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_014229311.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:NP_462662.1
GO:0015444 - P-type magnesium transporter activity [Evidence IEA]
GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004101989.1
COORDINATES: similar to AA sequence:RefSeq:WP_251009858.1
magnesium transporter protection protein MgtU
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF016710.2
COORDINATES: protein motif:HMM:TIGR02794.1
GO:0098567 - periplasmic side of plasma membrane [Evidence IEA]
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF033828.1
COORDINATES: similar to AA sequence:RefSeq:WP_015840355.1
GO:0004650 - polygalacturonase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008502220.1
COORDINATES: similar to AA sequence:RefSeq:WP_008322804.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014070808.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611384.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007864168.1
GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010245445.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611102.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004856299.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_004149695.1
COORDINATES: similar to AA sequence:RefSeq:WP_000470624.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015697699.1
GO:0016787 - hydrolase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF018986.2
COORDINATES: similar to AA sequence:RefSeq:WP_005974116.1
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: similar to AA sequence:RefSeq:WP_002443771.1
COORDINATES: similar to AA sequence:RefSeq:WP_013577303.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229773.1
binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612101.1
COORDINATES: similar to AA sequence:RefSeq:WP_001395480.1
COORDINATES: protein motif:HMM:NF024140.2
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005229768.1
COORDINATES: similar to AA sequence:RefSeq:WP_015345000.1
plasmid partitioning/stability family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013087139.1
COORDINATES: similar to AA sequence:RefSeq:WP_014063846.1
COORDINATES: similar to AA sequence:RefSeq:WP_002211749.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001104903.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087145.1
COORDINATES: similar to AA sequence:RefSeq:WP_008502215.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087149.1
COORDINATES: similar to AA sequence:RefSeq:WP_014063852.1
COORDINATES: similar to AA sequence:RefSeq:WP_009367026.1
COORDINATES: similar to AA sequence:RefSeq:WP_015572066.1
COORDINATES: similar to AA sequence:RefSeq:WP_020316901.1
COORDINATES: protein motif:HMM:NF036604.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:NP_052660.1
type I toxin-antitoxin system Hok family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004146154.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087181.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087183.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087184.1
COORDINATES: similar to AA sequence:RefSeq:WP_011906551.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087187.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087188.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011906554.1
COORDINATES: similar to AA sequence:RefSeq:WP_008324960.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087194.1
GO:0005576 - extracellular region [Evidence IEA]
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_008324958.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_013087196.1
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: similar to AA sequence:RefSeq:WP_015572089.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_013087198.1
F-type conjugal transfer pilus assembly protein TraB
COORDINATES: similar to AA sequence:RefSeq:WP_008325086.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_013087206.1
COORDINATES: similar to AA sequence:RefSeq:WP_008325088.1
type-F conjugative transfer system protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_008325089.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_011906566.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087209.1
COORDINATES: similar to AA sequence:RefSeq:WP_015572101.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087211.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087212.1
COORDINATES: similar to AA sequence:RefSeq:WP_011906568.1
COORDINATES: similar to AA sequence:RefSeq:WP_019104690.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_015572106.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_008325102.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_013087217.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_013087218.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087219.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087220.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087221.1
COORDINATES: similar to AA sequence:RefSeq:WP_019843239.1
conjugal transfer pilus assembly protein TraH
COORDINATES: similar to AA sequence:RefSeq:WP_008324894.1
conjugal transfer mating-pair stabilization protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_003018683.1
conjugal transfer complement resistance protein TraT
COORDINATES: similar to AA sequence:RefSeq:WP_008324887.1
COORDINATES: similar to AA sequence:RefSeq:WP_008324886.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_008324884.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:WP_006120918.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087098.1
COORDINATES: protein motif:HMM:NF022418.2
COORDINATES: protein motif:HMM:NF007370.0
COORDINATES: protein motif:HMM:NF012565.2
GO:0061077 - chaperone-mediated protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012786.2
GO:0015473 - fimbrial usher porin activity [Evidence IEA]
GO:0009297 - pilus assembly [Evidence IEA]
fimbria/pilus outer membrane usher protein
COORDINATES: protein motif:HMM:NF025319.2
FimD/PapC C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012635.2
GO:0007155 - cell adhesion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611482.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012907053.1
COORDINATES: similar to AA sequence:RefSeq:WP_000600827.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003855073.1
COORDINATES: similar to AA sequence:RefSeq:WP_010670383.1
lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008924644.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_001561276.1
COORDINATES: similar to AA sequence:RefSeq:WP_014063908.1
COORDINATES: protein motif:HMM:NF023902.2
COORDINATES: similar to AA sequence:RefSeq:WP_014416693.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
COORDINATES: protein motif:HMM:NF025689.2
type VI secretion protein IcmF/TssM N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF021377.2
DotU family type IV/VI secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_006684025.1
GO:0003674 - molecular_function [Evidence IEA]
type VI secretion system baseplate subunit TssK
COORDINATES: protein motif:HMM:NF024200.2
COORDINATES: similar to AA sequence:RefSeq:WP_006684023.1
COORDINATES: similar to AA sequence:RefSeq:WP_001390299.1
COORDINATES: protein motif:HMM:TIGR03361.1
type VI secretion system tip protein TssI/VgrG
COORDINATES: similar to AA sequence:RefSeq:WP_004930119.1
type VI secretion system baseplate subunit TssG
COORDINATES: similar to AA sequence:RefSeq:WP_007371756.1
type VI secretion system baseplate subunit TssF
COORDINATES: protein motif:HMM:NF016829.2
COORDINATES: similar to AA sequence:RefSeq:WP_006684015.1
type VI secretion system contractile sheath large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_000535929.1
type VI secretion system contractile sheath small subunit
COORDINATES: similar to AA sequence:RefSeq:NP_052628.1
COORDINATES: similar to AA sequence:RefSeq:WP_015572055.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:NP_052640.1
COORDINATES: similar to AA sequence:RefSeq:WP_004132004.1
ParB/RepB/Spo0J family plasmid partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_000348879.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001585051.1
COORDINATES: similar to AA sequence:RefSeq:WP_011846847.1
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004144477.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229620.1
COORDINATES: similar to AA sequence:RefSeq:WP_003850580.1
COORDINATES: similar to AA sequence:RefSeq:WP_013096847.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014172341.1
COORDINATES: similar to AA sequence:RefSeq:WP_013511955.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014172339.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_490535.1
COORDINATES: similar to AA sequence:RefSeq:NP_490534.1
COORDINATES: similar to AA sequence:RefSeq:WP_001262004.1
COORDINATES: similar to AA sequence:RefSeq:WP_004146150.1
COORDINATES: similar to AA sequence:RefSeq:WP_008325142.1
COORDINATES: similar to AA sequence:RefSeq:WP_014063862.1
COORDINATES: protein motif:HMM:NF013676.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611146.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.