Anas platyrhynchos isolate Z2 breed Pekin duck chromosome 33, ZJU1.0, whole genome shotgun sequence.
type: Entry
definition: Anas platyrhynchos isolate Z2 breed Pekin duck chromosome 33, ZJU1.0, whole genome shotgun sequence.
sequence version: NC_051802.1
sequence date: 2020-12-15
sequence: sequence
division: CON
label: NC_051802.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA681492
dblink: SAMN15588841
keyword: WGS
keyword: RefSeq
source: Anas platyrhynchos (mallard)
organism: Anas platyrhynchos
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM027274.1.\nAssembly name: ZJU1.0\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Zhejiang University on\n2020/11/23. The original whole-genome shotgun project has the\naccession JACGAL000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Zhejiang University\nAssembly Method :: FALCON-Unzip v. git 12072017\nAssembly Name :: ZJU1.0\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 143.0x\nSequencing Technology :: PacBio RSII; PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Anas platyrhynchos Annotation\n Release 104\nAnnotation Version :: 104\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.5\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 112901
topology: linear
so has quality: SO_0000987
location: 1..112901
location: region:1-112901:1
RO_0002162: 8839

NC_051802
type: RefSeq
SIO_000068: refseq

PRJNA681492
type: BioProject
SIO_000068: bioproject

SAMN15588841
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:112901:1
position: 112901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-112901:1:source
so part of: sequence
organism: Anas platyrhynchos
mol type: genomic DNA
isolate: Z2
chromosome: 33
sex: pooled male and female
tissue type: multiple
dev stage: adult
breed: Pekin duck

8839
type: Taxonomy
SIO_000068: taxonomy

ACTN4
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
gene: ACTN4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <120..8329
location: region:120-8329:1
so has part: feature:120-8329:1:exon
subclass of: SO_0000010

119714260
type: Gene
SIO_000068: ncbigene

position:120:1
position: 120
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:8329:1
position: 8329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:120-8329:1:exon

ACTN4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: ACTN4
product: actinin alpha 4, transcript variant X1
inference: similar to RNA sequence (same species):INSD:GHJL01006797.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 595 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 93 samples with support for all annotated introns
transcript id: XM_038169349.1
SIO_010081: ACTN4
subclass of: SO_0000673
so part of: ACTN4
location: join(<120..198,322..403,697..782,2409..2501,2588..2818,3036..3183,3728..3878,4379..4487,4556..4696,4778..4960,5053..5187,5418..5597,5836..5982,6272..6352,6678..6743,6978..7136,7225..8329)
location: region:120-8329:1
so has part: feature:120-198:1:exon
so has part: feature:322-403:1:exon
so has part: feature:697-782:1:exon
so has part: feature:2409-2501:1:exon
so has part: feature:2588-2818:1:exon
so has part: feature:3036-3183:1:exon
so has part: feature:3728-3878:1:exon
so has part: feature:4379-4487:1:exon
so has part: feature:4556-4696:1:exon
so has part: feature:4778-4960:1:exon
so has part: feature:5053-5187:1:exon
so has part: feature:5418-5597:1:exon
so has part: feature:5836-5982:1:exon
so has part: feature:6272-6352:1:exon
so has part: feature:6678-6743:1:exon
so has part: feature:6978-7136:1:exon
so has part: feature:7225-8329:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:120-198:1:exon

position:198:1
position: 198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:322-403:1:exon

position:322:1
position: 322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:403:1
position: 403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:697-782:1:exon

position:697:1
position: 697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:782:1
position: 782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2409-2501:1:exon

position:2409:1
position: 2409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2501:1
position: 2501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2588-2818:1:exon

position:2588:1
position: 2588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2818:1
position: 2818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3036-3183:1:exon

position:3036:1
position: 3036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3183:1
position: 3183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3728-3878:1:exon

position:3728:1
position: 3728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3878:1
position: 3878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4379-4487:1:exon

position:4379:1
position: 4379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4487:1
position: 4487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4556-4696:1:exon

position:4556:1
position: 4556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4696:1
position: 4696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4778-4960:1:exon

position:4778:1
position: 4778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4960:1
position: 4960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:5053-5187:1:exon

position:5053:1
position: 5053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5187:1
position: 5187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:5418-5597:1:exon

position:5418:1
position: 5418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5597:1
position: 5597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:5836-5982:1:exon

position:5836:1
position: 5836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5982:1
position: 5982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:6272-6352:1:exon

position:6272:1
position: 6272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6352:1
position: 6352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:6678-6743:1:exon

position:6678:1
position: 6678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6743:1
position: 6743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:6978-7136:1:exon

position:6978:1
position: 6978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7136:1
position: 7136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:7225-8329:1:exon

position:7225:1
position: 7225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ACTN4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: ACTN4
product: actinin alpha 4, transcript variant X3
inference: similar to RNA sequence (same species):INSD:GHJL01006797.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 595 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 126 samples with support for all annotated introns
transcript id: XM_038169352.1
SIO_010081: ACTN4
subclass of: SO_0000673
so part of: ACTN4
location: join(<120..198,322..403,697..782,2409..2501,2588..2818,3036..3183,3728..3878,4379..4487,4556..4696,4778..4960,5053..5187,5418..5597,5836..5982,6272..6352,6978..7136,7225..8329)
location: region:120-8329:1
so has part: feature:120-198:1:exon
so has part: feature:322-403:1:exon
so has part: feature:697-782:1:exon
so has part: feature:2409-2501:1:exon
so has part: feature:2588-2818:1:exon
so has part: feature:3036-3183:1:exon
so has part: feature:3728-3878:1:exon
so has part: feature:4379-4487:1:exon
so has part: feature:4556-4696:1:exon
so has part: feature:4778-4960:1:exon
so has part: feature:5053-5187:1:exon
so has part: feature:5418-5597:1:exon
so has part: feature:5836-5982:1:exon
so has part: feature:6272-6352:1:exon
so has part: feature:6978-7136:1:exon
so has part: feature:7225-8329:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:120-198:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:322-403:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:697-782:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2409-2501:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2588-2818:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3036-3183:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3728-3878:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4379-4487:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4556-4696:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4778-4960:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5053-5187:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5418-5597:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5836-5982:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6272-6352:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6978-7136:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:7225-8329:1:exon

ACTN4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: ACTN4
product: actinin alpha 4, transcript variant X2
inference: similar to RNA sequence (same species):INSD:GHJL01006797.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 595 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 93 samples with support for all annotated introns
transcript id: XM_038169350.1
SIO_010081: ACTN4
subclass of: SO_0000673
so part of: ACTN4
location: join(<120..198,322..403,1058..1143,2409..2501,2588..2818,3036..3183,3728..3878,4379..4487,4556..4696,4778..4960,5053..5187,5418..5597,5836..5982,6272..6352,6678..6743,6978..7136,7225..8329)
location: region:120-8329:1
so has part: feature:120-198:1:exon
so has part: feature:322-403:1:exon
so has part: feature:1058-1143:1:exon
so has part: feature:2409-2501:1:exon
so has part: feature:2588-2818:1:exon
so has part: feature:3036-3183:1:exon
so has part: feature:3728-3878:1:exon
so has part: feature:4379-4487:1:exon
so has part: feature:4556-4696:1:exon
so has part: feature:4778-4960:1:exon
so has part: feature:5053-5187:1:exon
so has part: feature:5418-5597:1:exon
so has part: feature:5836-5982:1:exon
so has part: feature:6272-6352:1:exon
so has part: feature:6678-6743:1:exon
so has part: feature:6978-7136:1:exon
so has part: feature:7225-8329:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:120-198:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:322-403:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1058-1143:1:exon

position:1058:1
position: 1058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1143:1
position: 1143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2409-2501:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2588-2818:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3036-3183:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3728-3878:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4379-4487:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4556-4696:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4778-4960:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5053-5187:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5418-5597:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5836-5982:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6272-6352:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6678-6743:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6978-7136:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:7225-8329:1:exon

ACTN4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: ACTN4
inference: similar to RNA sequence (same species):INSD:GHJL01006797.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 557 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 2
product: alpha-actinin-4 isoform X1
translation: MVDYHSAAQPCPYPAAGPGAGPDGDYMAQEDDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIDEDFRDGLKLMLLLEVISGERLPKPERGKMRVHKINNVNKALDFIASKGVKLVSIGAEEIVDGNAKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPELIEYDKLRKDDPVTNLNNAFEVAEKYLDIPKMLDAEDIVNTARPDEKAIMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENEHLMEDYEKLASDLLEWIRRTIPWLEDRSPQKTIQEMQQKLEDFRDYRRVHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGRMVADINNGWQHLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHEAWTEGKEAMLKQKDYESATLSDIKALIRKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDVLGSLTHSRREALEKTEKQLETIDELHLEYAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLIAAHDQFKSTLPDADKEREAILGIQREAQRIADFNSIKLGGNNPYTSVTPQIINSKWERVQQLVPKRDHALLDEQSKQQSNEHLRRQFASQANIVGPWIQTKMEEIGRISIEMNGTLEDQLNHLKQYEQSIVDYKPNIDLLEQQHQLIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQMQEFRASFNHFDKDHGGALGPEEFKACLISLGYDVENDRQKRTGSTDADDFRALLISAGCSLGDAEFNRIMSLVDPNGSGSVTFQAFIDFMSRETTDTDTADQVIASFKVLAGDKNYITAEELRRELPPEQAEYCIARMAPYRGPDAAPGALDYKSFSTALYGESDL
SIO_010081: ACTN4
subclass of: SO_0000673
so part of: ACTN4
location: join(<120..198,322..403,697..782,2409..2501,2588..2818,3036..3183,3728..3878,4379..4487,4556..4696,4778..4960,5053..5187,5418..5597,5836..5982,6272..6352,6678..6743,6978..7136,7225..7383)
location: region:120-7383:1
so has part: feature:120-198:1:exon
so has part: feature:322-403:1:exon
so has part: feature:697-782:1:exon
so has part: feature:2409-2501:1:exon
so has part: feature:2588-2818:1:exon
so has part: feature:3036-3183:1:exon
so has part: feature:3728-3878:1:exon
so has part: feature:4379-4487:1:exon
so has part: feature:4556-4696:1:exon
so has part: feature:4778-4960:1:exon
so has part: feature:5053-5187:1:exon
so has part: feature:5418-5597:1:exon
so has part: feature:5836-5982:1:exon
so has part: feature:6272-6352:1:exon
so has part: feature:6678-6743:1:exon
so has part: feature:6978-7136:1:exon
so has part: feature:7225-7383:1:exon

XP_038025277.1
type: Protein
SIO_000068: ncbiprotein

position:7383:1
position: 7383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:120-198:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:322-403:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:697-782:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2409-2501:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2588-2818:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3036-3183:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3728-3878:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4379-4487:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4556-4696:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4778-4960:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5053-5187:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5418-5597:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5836-5982:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6272-6352:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6678-6743:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6978-7136:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:7225-7383:1:exon

ACTN4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: ACTN4
inference: similar to RNA sequence (same species):INSD:GHJL01006797.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 557 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 2
product: alpha-actinin-4 isoform X3
translation: MVDYHSAAQPCPYPAAGPGAGPDGDYMAQEDDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIDEDFRDGLKLMLLLEVISGERLPKPERGKMRVHKINNVNKALDFIASKGVKLVSIGAEEIVDGNAKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPELIEYDKLRKDDPVTNLNNAFEVAEKYLDIPKMLDAEDIVNTARPDEKAIMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENEHLMEDYEKLASDLLEWIRRTIPWLEDRSPQKTIQEMQQKLEDFRDYRRVHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGRMVADINNGWQHLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHEAWTEGKEAMLKQKDYESATLSDIKALIRKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDVLGSLTHSRREALEKTEKQLETIDELHLEYAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLIAAHDQFKSTLPDADKEREAILGIQREAQRIADFNSIKLGGNNPYTSVTPQIINSKWERVQQLVPKRDHALLDEQSKQQSNEHLRRQFASQANIVGPWIQTKMEEIGRISIEMNGTLEDQLNHLKQYEQSIVDYKPNIDLLEQQHQLIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQMQEFRASFNHFDKDHGGALGPEEFKACLISLGYDVENDRQGDAEFNRIMSLVDPNGSGSVTFQAFIDFMSRETTDTDTADQVIASFKVLAGDKNYITAEELRRELPPEQAEYCIARMAPYRGPDAAPGALDYKSFSTALYGESDL
SIO_010081: ACTN4
subclass of: SO_0000673
so part of: ACTN4
location: join(<120..198,322..403,697..782,2409..2501,2588..2818,3036..3183,3728..3878,4379..4487,4556..4696,4778..4960,5053..5187,5418..5597,5836..5982,6272..6352,6978..7136,7225..7383)
location: region:120-7383:1
so has part: feature:120-198:1:exon
so has part: feature:322-403:1:exon
so has part: feature:697-782:1:exon
so has part: feature:2409-2501:1:exon
so has part: feature:2588-2818:1:exon
so has part: feature:3036-3183:1:exon
so has part: feature:3728-3878:1:exon
so has part: feature:4379-4487:1:exon
so has part: feature:4556-4696:1:exon
so has part: feature:4778-4960:1:exon
so has part: feature:5053-5187:1:exon
so has part: feature:5418-5597:1:exon
so has part: feature:5836-5982:1:exon
so has part: feature:6272-6352:1:exon
so has part: feature:6978-7136:1:exon
so has part: feature:7225-7383:1:exon

XP_038025280.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:120-198:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:322-403:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:697-782:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2409-2501:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2588-2818:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3036-3183:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3728-3878:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4379-4487:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4556-4696:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4778-4960:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5053-5187:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5418-5597:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5836-5982:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6272-6352:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6978-7136:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:7225-7383:1:exon

ACTN4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: ACTN4
inference: similar to RNA sequence (same species):INSD:GHJL01006797.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 557 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 2
product: alpha-actinin-4 isoform X2
translation: MVDYHSAAQPCPYPAAGPGAGPDGDYMAQEDDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIDEDFRDGLKLMLLLEVISGERLPKPERGKMRVHKINNVNKALDFIASKGVKLVSIGAEEIVDGNAKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPELIEYDKLRKDDPVTNLNNAFEVAEKYLDIPKMLDAEDIVGTLRPDEKAIMTYVSCFYHAFSGAQKAETAANRICKVLAVNQENEHLMEDYEKLASDLLEWIRRTIPWLEDRSPQKTIQEMQQKLEDFRDYRRVHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGRMVADINNGWQHLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHEAWTEGKEAMLKQKDYESATLSDIKALIRKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDVLGSLTHSRREALEKTEKQLETIDELHLEYAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLIAAHDQFKSTLPDADKEREAILGIQREAQRIADFNSIKLGGNNPYTSVTPQIINSKWERVQQLVPKRDHALLDEQSKQQSNEHLRRQFASQANIVGPWIQTKMEEIGRISIEMNGTLEDQLNHLKQYEQSIVDYKPNIDLLEQQHQLIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQMQEFRASFNHFDKDHGGALGPEEFKACLISLGYDVENDRQKRTGSTDADDFRALLISAGCSLGDAEFNRIMSLVDPNGSGSVTFQAFIDFMSRETTDTDTADQVIASFKVLAGDKNYITAEELRRELPPEQAEYCIARMAPYRGPDAAPGALDYKSFSTALYGESDL
SIO_010081: ACTN4
subclass of: SO_0000673
so part of: ACTN4
location: join(<120..198,322..403,1058..1143,2409..2501,2588..2818,3036..3183,3728..3878,4379..4487,4556..4696,4778..4960,5053..5187,5418..5597,5836..5982,6272..6352,6678..6743,6978..7136,7225..7383)
location: region:120-7383:1
so has part: feature:120-198:1:exon
so has part: feature:322-403:1:exon
so has part: feature:1058-1143:1:exon
so has part: feature:2409-2501:1:exon
so has part: feature:2588-2818:1:exon
so has part: feature:3036-3183:1:exon
so has part: feature:3728-3878:1:exon
so has part: feature:4379-4487:1:exon
so has part: feature:4556-4696:1:exon
so has part: feature:4778-4960:1:exon
so has part: feature:5053-5187:1:exon
so has part: feature:5418-5597:1:exon
so has part: feature:5836-5982:1:exon
so has part: feature:6272-6352:1:exon
so has part: feature:6678-6743:1:exon
so has part: feature:6978-7136:1:exon
so has part: feature:7225-7383:1:exon

XP_038025278.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:120-198:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:322-403:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1058-1143:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2409-2501:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2588-2818:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3036-3183:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3728-3878:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4379-4487:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4556-4696:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4778-4960:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5053-5187:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5418-5597:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5836-5982:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6272-6352:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6678-6743:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6978-7136:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:7225-7383:1:exon

ECH1
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
gene: ECH1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(8910..12198)
location: region:8910-12198:-1
so has part: feature:8910-12198:-1:exon
subclass of: SO_0000010

119714262
type: Gene
SIO_000068: ncbigene

position:8910:-1
position: 8910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12198:-1
position: 12198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8910-12198:-1:exon

ECH1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: ECH1
product: enoyl-CoA hydratase 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038169354.1
SIO_010081: ECH1
subclass of: SO_0000673
so part of: ECH1
location: complement(join(8910..9071,9147..9297,9534..9605,9693..9763,9954..10018,10118..10166,10245..10369,10760..10848,10964..11145,11671..11922,12193..12198))
location: region:8910-12198:-1
so has part: feature:12193-12198:-1:exon
so has part: feature:11671-11922:-1:exon
so has part: feature:10964-11145:-1:exon
so has part: feature:10760-10848:-1:exon
so has part: feature:10245-10369:-1:exon
so has part: feature:10118-10166:-1:exon
so has part: feature:9954-10018:-1:exon
so has part: feature:9693-9763:-1:exon
so has part: feature:9534-9605:-1:exon
so has part: feature:9147-9297:-1:exon
so has part: feature:8910-9071:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12193-12198:-1:exon

position:12193:-1
position: 12193
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11671-11922:-1:exon

position:11671:-1
position: 11671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11922:-1
position: 11922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:10964-11145:-1:exon

position:10964:-1
position: 10964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11145:-1
position: 11145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:10760-10848:-1:exon

position:10760:-1
position: 10760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10848:-1
position: 10848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:10245-10369:-1:exon

position:10245:-1
position: 10245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10369:-1
position: 10369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:10118-10166:-1:exon

position:10118:-1
position: 10118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10166:-1
position: 10166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:9954-10018:-1:exon

position:9954:-1
position: 9954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10018:-1
position: 10018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:9693-9763:-1:exon

position:9693:-1
position: 9693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9763:-1
position: 9763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:9534-9605:-1:exon

position:9534:-1
position: 9534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9605:-1
position: 9605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:9147-9297:-1:exon

position:9147:-1
position: 9147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9297:-1
position: 9297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:8910-9071:-1:exon

position:9071:-1
position: 9071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ECH1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: ECH1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial
translation: MCRGSPGGGGGSRCPPPIRGGTGFGGGERGKGGASVSGGRRSEAASGLPRGASARPGVALCASNSLTSGPGGLRGWRRWLRGCGGDLSVCWPGRWRRRRWRGGGAPPTPPQERPFETLRVTPPREHVLHVELHRPDKRNAMNTAFWREMVECFQGIAQDPSCRAVVISGAGKIFTAGIDLVEMGSEFLAVGGEDAARRAWQLQQKIRQYQESFSVLEKCPKPVIAAVHGACIGAGVDLISACDIRYCTEDAWFQVKEVDIGLAADVGTLQRLPKIVGNQSLVNELAFTARKMMAPEAWSCGLVSRVFPDRAALLQGALELAASIAARSPVAVQGTKVNLLYSRDHPVPEGLRFMAAWNMSMLQTDDILKSAQAAMEKKRPEDVAYAKL
SIO_010081: ECH1
subclass of: SO_0000673
so part of: ECH1
location: complement(join(8967..9071,9147..9297,9534..9605,9693..9763,9954..10018,10118..10166,10245..10369,10760..10848,10964..11145,11671..11922,12193..12198))
location: region:8967-12198:-1
so has part: feature:12193-12198:-1:exon
so has part: feature:11671-11922:-1:exon
so has part: feature:10964-11145:-1:exon
so has part: feature:10760-10848:-1:exon
so has part: feature:10245-10369:-1:exon
so has part: feature:10118-10166:-1:exon
so has part: feature:9954-10018:-1:exon
so has part: feature:9693-9763:-1:exon
so has part: feature:9534-9605:-1:exon
so has part: feature:9147-9297:-1:exon
so has part: feature:8967-9071:-1:exon

XP_038025282.1
type: Protein
SIO_000068: ncbiprotein

position:8967:-1
position: 8967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12193-12198:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11671-11922:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10964-11145:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10760-10848:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10245-10369:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10118-10166:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9954-10018:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9693-9763:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9534-9605:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:9147-9297:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8967-9071:-1:exon

HNRNPL
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
gene: HNRNPL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(12331..19475)
location: region:12331-19475:-1
so has part: feature:12331-19475:-1:exon
subclass of: SO_0000010

119714261
type: Gene
SIO_000068: ncbigene

position:12331:-1
position: 12331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19475:-1
position: 19475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12331-19475:-1:exon

HNRNPL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: HNRNPL
product: heterogeneous nuclear ribonucleoprotein L
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 126 samples with support for all annotated introns
transcript id: XM_038169353.1
SIO_010081: HNRNPL
subclass of: SO_0000673
so part of: HNRNPL
location: complement(join(12331..12451,12993..13088,13229..13286,13390..13591,13668..13789,13864..14310,16833..16905,17004..17100,17221..17306,17833..18070,18576..18694,19240..19475))
location: region:12331-19475:-1
so has part: feature:19240-19475:-1:exon
so has part: feature:18576-18694:-1:exon
so has part: feature:17833-18070:-1:exon
so has part: feature:17221-17306:-1:exon
so has part: feature:17004-17100:-1:exon
so has part: feature:16833-16905:-1:exon
so has part: feature:13864-14310:-1:exon
so has part: feature:13668-13789:-1:exon
so has part: feature:13390-13591:-1:exon
so has part: feature:13229-13286:-1:exon
so has part: feature:12993-13088:-1:exon
so has part: feature:12331-12451:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19240-19475:-1:exon

position:19240:-1
position: 19240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:18576-18694:-1:exon

position:18576:-1
position: 18576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18694:-1
position: 18694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:17833-18070:-1:exon

position:17833:-1
position: 17833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18070:-1
position: 18070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:17221-17306:-1:exon

position:17221:-1
position: 17221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17306:-1
position: 17306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:17004-17100:-1:exon

position:17004:-1
position: 17004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17100:-1
position: 17100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:16833-16905:-1:exon

position:16833:-1
position: 16833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16905:-1
position: 16905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:13864-14310:-1:exon

position:13864:-1
position: 13864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14310:-1
position: 14310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:13668-13789:-1:exon

position:13668:-1
position: 13668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13789:-1
position: 13789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:13390-13591:-1:exon

position:13390:-1
position: 13390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13591:-1
position: 13591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:13229-13286:-1:exon

position:13229:-1
position: 13229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13286:-1
position: 13286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:12993-13088:-1:exon

position:12993:-1
position: 12993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13088:-1
position: 13088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:12331-12451:-1:exon

position:12451:-1
position: 12451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HNRNPL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: HNRNPL
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein L
translation: MGKMAAGGGGGGSGRYYGGGGGGDGGRAPKRQKTENAEPPPHGPGGPGGGGGGGPGAAGAENYDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDILGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDADDSRGVNNVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGEPGGNPSKRQRQPPLLGDHPAEYGKAWGTGGEGVTMRGGHRRGSQPXFSVPPPHAGGPHGGYHGHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNIFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQQAIMPGQSYGLEDGSCSYKDFSGSRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEDNFYEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS
SIO_010081: HNRNPL
subclass of: SO_0000673
so part of: HNRNPL
location: complement(join(12393..12451,12993..13088,13229..13286,13390..13591,13668..13789,13864..14310,16833..16905,17004..17100,17221..17306,17833..18070,18576..18694,19240..19419))
location: region:12393-19419:-1
so has part: feature:19240-19419:-1:exon
so has part: feature:18576-18694:-1:exon
so has part: feature:17833-18070:-1:exon
so has part: feature:17221-17306:-1:exon
so has part: feature:17004-17100:-1:exon
so has part: feature:16833-16905:-1:exon
so has part: feature:13864-14310:-1:exon
so has part: feature:13668-13789:-1:exon
so has part: feature:13390-13591:-1:exon
so has part: feature:13229-13286:-1:exon
so has part: feature:12993-13088:-1:exon
so has part: feature:12393-12451:-1:exon

XP_038025281.1
type: Protein
SIO_000068: ncbiprotein

position:12393:-1
position: 12393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19419:-1
position: 19419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19240-19419:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:18576-18694:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:17833-18070:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:17221-17306:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:17004-17100:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:16833-16905:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:13864-14310:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:13668-13789:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:13390-13591:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:13229-13286:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:12993-13088:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:12393-12451:-1:exon

SIRT2
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
gene: SIRT2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(19516..23713)
location: region:19516-23713:-1
so has part: feature:19516-23713:-1:exon
subclass of: SO_0000010

119714255
type: Gene
SIO_000068: ncbigene

position:19516:-1
position: 19516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23713:-1
position: 23713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19516-23713:-1:exon

SIRT2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: SIRT2
product: sirtuin 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 81% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038169344.1
SIO_010081: SIRT2
subclass of: SO_0000673
so part of: SIRT2
location: complement(join(19516..19788,20524..20772,20842..20908,21019..21086,21171..21222,21323..21399,21506..21561,21707..21766,21873..22002,22108..22176,22263..22319,22434..22540,22876..23034,23144..23206,23638..23713))
location: region:19516-23713:-1
so has part: feature:23638-23713:-1:exon
so has part: feature:23144-23206:-1:exon
so has part: feature:22876-23034:-1:exon
so has part: feature:22434-22540:-1:exon
so has part: feature:22263-22319:-1:exon
so has part: feature:22108-22176:-1:exon
so has part: feature:21873-22002:-1:exon
so has part: feature:21707-21766:-1:exon
so has part: feature:21506-21561:-1:exon
so has part: feature:21323-21399:-1:exon
so has part: feature:21171-21222:-1:exon
so has part: feature:21019-21086:-1:exon
so has part: feature:20842-20908:-1:exon
so has part: feature:20524-20772:-1:exon
so has part: feature:19516-19788:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23638-23713:-1:exon

position:23638:-1
position: 23638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:23144-23206:-1:exon

position:23144:-1
position: 23144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23206:-1
position: 23206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:22876-23034:-1:exon

position:22876:-1
position: 22876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23034:-1
position: 23034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:22434-22540:-1:exon

position:22434:-1
position: 22434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22540:-1
position: 22540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:22263-22319:-1:exon

position:22263:-1
position: 22263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22319:-1
position: 22319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:22108-22176:-1:exon

position:22108:-1
position: 22108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22176:-1
position: 22176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:21873-22002:-1:exon

position:21873:-1
position: 21873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22002:-1
position: 22002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:21707-21766:-1:exon

position:21707:-1
position: 21707
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21766:-1
position: 21766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:21506-21561:-1:exon

position:21506:-1
position: 21506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21561:-1
position: 21561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:21323-21399:-1:exon

position:21323:-1
position: 21323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21399:-1
position: 21399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:21171-21222:-1:exon

position:21171:-1
position: 21171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21222:-1
position: 21222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:21019-21086:-1:exon

position:21019:-1
position: 21019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21086:-1
position: 21086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:20842-20908:-1:exon

position:20842:-1
position: 20842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20908:-1
position: 20908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:20524-20772:-1:exon

position:20524:-1
position: 20524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20772:-1
position: 20772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:19516-19788:-1:exon

position:19788:-1
position: 19788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SIRT2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: SIRT2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NAD-dependent protein deacetylase sirtuin-2
translation: MRRGRAQAAMGPAPPSREIPAPGAEAGDEAEPEGGAAGEAEMELLRSLLARTLGLGSEPGERVLDELSLPGVARFMRSERCRRVVCMVGAGISTAAGIPDFRSPGTGLYANLARYELPYPEAIFDISYFKEHPEPFFALAKELLPGQLKPTVCHYFMRLLKEKGLLLRCYTQNIDTLERVAGLEPEELVEAHGTFHTSHCTRASCRQPYGLSWMKERILSSLVPKCEKCQGVVKPDIVFFGESLPSRFFTLLQSDFQKVDLLLIMGTSLQVQPFASLVSRVPASTPRLLINKEKTGQSDPLMSLMGFGCGMDFDSDKAYRDVAWLGDCDQGCLELAELLGWKEELQDLVRKEHAAIDAKARGGRRKKPGGASKKPGGAPKKPGRGPKKPGGATRRGGGGASPPGGVRPPRPKGVGGSKGTHFSPIAFWETQRVGKKKAEPRRTAVKMGGAHPRRTPPAANQLGGRANGRAARPIRRARRADSQERRRAQSRRWAGRRPGGPMRRRPRLSGGGAAQ
SIO_010081: SIRT2
subclass of: SO_0000673
so part of: SIRT2
location: complement(join(19516..19788,20524..20772,20842..20908,21019..21086,21171..21222,21323..21399,21506..21561,21707..21766,21873..22002,22108..22176,22263..22319,22434..22540,22876..23034,23144..23206,23638..23698))
location: region:19516-23698:-1
so has part: feature:23638-23698:-1:exon
so has part: feature:23144-23206:-1:exon
so has part: feature:22876-23034:-1:exon
so has part: feature:22434-22540:-1:exon
so has part: feature:22263-22319:-1:exon
so has part: feature:22108-22176:-1:exon
so has part: feature:21873-22002:-1:exon
so has part: feature:21707-21766:-1:exon
so has part: feature:21506-21561:-1:exon
so has part: feature:21323-21399:-1:exon
so has part: feature:21171-21222:-1:exon
so has part: feature:21019-21086:-1:exon
so has part: feature:20842-20908:-1:exon
so has part: feature:20524-20772:-1:exon
so has part: feature:19516-19788:-1:exon

XP_038025272.1
type: Protein
SIO_000068: ncbiprotein

position:23698:-1
position: 23698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23638-23698:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:23144-23206:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:22876-23034:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:22434-22540:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:22263-22319:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:22108-22176:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:21873-22002:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:21707-21766:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:21506-21561:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:21323-21399:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:21171-21222:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:21019-21086:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:20842-20908:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:20524-20772:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:19516-19788:-1:exon

LOC119714269
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
gene: LOC119714269
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 23972..25037
location: region:23972-25037:1
so has part: feature:23972-25037:1:exon
subclass of: SO_0000011

119714269
type: Gene
SIO_000068: ncbigene

position:23972:1
position: 23972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25037:1
position: 25037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23972-25037:1:exon

LOC119714269
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 8839
nc RNA class: lncRNA
gene: LOC119714269
product: uncharacterized LOC119714269
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 54 samples with support for all annotated introns
transcript id: XR_005261336.1
SIO_010081: LOC119714269
subclass of: SO_0000673
so part of: LOC119714269
location: join(23972..24124,24644..24749,25002..25037)
location: region:23972-25037:1
so has part: feature:23972-24124:1:exon
so has part: feature:24644-24749:1:exon
so has part: feature:25002-25037:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23972-24124:1:exon

position:24124:1
position: 24124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:24644-24749:1:exon

position:24644:1
position: 24644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24749:1
position: 24749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:25002-25037:1:exon

position:25002:1
position: 25002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SARS2
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
gene: SARS2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(26629..30622)
location: region:26629-30622:-1
so has part: feature:26629-30622:-1:exon
subclass of: SO_0000010

119714265
type: Gene
SIO_000068: ncbigene

position:26629:-1
position: 26629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30622:-1
position: 30622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26629-30622:-1:exon

SARS2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: SARS2
product: seryl-tRNA synthetase 2, mitochondrial
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 111 samples with support for all annotated introns
transcript id: XM_038169359.1
SIO_010081: SARS2
subclass of: SO_0000673
so part of: SARS2
location: complement(join(26629..26830,26928..26993,27086..27178,27273..27366,27451..27563,27652..27739,27836..27881,28103..28211,28323..28370,28608..28713,28796..28859,28979..29033,29124..29264,29382..29411,29985..30080,30359..30622))
location: region:26629-30622:-1
so has part: feature:30359-30622:-1:exon
so has part: feature:29985-30080:-1:exon
so has part: feature:29382-29411:-1:exon
so has part: feature:29124-29264:-1:exon
so has part: feature:28979-29033:-1:exon
so has part: feature:28796-28859:-1:exon
so has part: feature:28608-28713:-1:exon
so has part: feature:28323-28370:-1:exon
so has part: feature:28103-28211:-1:exon
so has part: feature:27836-27881:-1:exon
so has part: feature:27652-27739:-1:exon
so has part: feature:27451-27563:-1:exon
so has part: feature:27273-27366:-1:exon
so has part: feature:27086-27178:-1:exon
so has part: feature:26928-26993:-1:exon
so has part: feature:26629-26830:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:30359-30622:-1:exon

position:30359:-1
position: 30359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:29985-30080:-1:exon

position:29985:-1
position: 29985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30080:-1
position: 30080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:29382-29411:-1:exon

position:29382:-1
position: 29382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29411:-1
position: 29411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:29124-29264:-1:exon

position:29124:-1
position: 29124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29264:-1
position: 29264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:28979-29033:-1:exon

position:28979:-1
position: 28979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29033:-1
position: 29033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:28796-28859:-1:exon

position:28796:-1
position: 28796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28859:-1
position: 28859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:28608-28713:-1:exon

position:28608:-1
position: 28608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28713:-1
position: 28713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:28323-28370:-1:exon

position:28323:-1
position: 28323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28370:-1
position: 28370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:28103-28211:-1:exon

position:28103:-1
position: 28103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28211:-1
position: 28211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:27836-27881:-1:exon

position:27836:-1
position: 27836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27881:-1
position: 27881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:27652-27739:-1:exon

position:27652:-1
position: 27652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27739:-1
position: 27739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:27451-27563:-1:exon

position:27451:-1
position: 27451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27563:-1
position: 27563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:27273-27366:-1:exon

position:27273:-1
position: 27273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27366:-1
position: 27366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:27086-27178:-1:exon

position:27086:-1
position: 27086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27178:-1
position: 27178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:26928-26993:-1:exon

position:26928:-1
position: 26928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26993:-1
position: 26993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:26629-26830:-1:exon

position:26830:-1
position: 26830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SARS2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: SARS2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine--tRNA ligase, mitochondrial
translation: MAAPRVLLAAARRAAAAAAATGGGRGRRAAGGVAAPPGGRSRLYEHAREGLSARPRLDVEALSGHELERRRGPLREGDLRDILQTWARLREVRAAIARLEAQRDEVARGVRELVASHAKDALQTVPEYAALRARGRQVRLQLQTLLAEEAALDERFYLKALQLPNRTHPEAPVGDESQARVMEVVGEKPVFDFQPRGHLELGEALDIIRQRRLSHVSGHRSYYLCGAGALLQHALVSFVLAKLLPKGFLPMTVPDLLRGAVFEGCGMQLNASPSPVYAIDPARFEDLCLAGTSEVGIAGYFMDHAVRLQDMPIRVVCSSTCYRAETDTGREPWGLYRVHQFTKVEMFGVTAAESGTESEELLAEFVALQKEIFSELGLHYRVLDMPTQELGLPAYRKFDIEAWMPGRGKYGEISSASNCTDYQSRRLNIMYSDGAGRLHHAHTVNGTACAVARMLIALLECNQQPDGSIRVPPALQPFVGRAVLTRPPAPLLRYIGPNQPGGGPRGGDAEEPPSSPGR
SIO_010081: SARS2
subclass of: SO_0000673
so part of: SARS2
location: complement(join(26669..26830,26928..26993,27086..27178,27273..27366,27451..27563,27652..27739,27836..27881,28103..28211,28323..28370,28608..28713,28796..28859,28979..29033,29124..29264,29382..29411,29985..30080,30359..30604))
location: region:26669-30604:-1
so has part: feature:30359-30604:-1:exon
so has part: feature:29985-30080:-1:exon
so has part: feature:29382-29411:-1:exon
so has part: feature:29124-29264:-1:exon
so has part: feature:28979-29033:-1:exon
so has part: feature:28796-28859:-1:exon
so has part: feature:28608-28713:-1:exon
so has part: feature:28323-28370:-1:exon
so has part: feature:28103-28211:-1:exon
so has part: feature:27836-27881:-1:exon
so has part: feature:27652-27739:-1:exon
so has part: feature:27451-27563:-1:exon
so has part: feature:27273-27366:-1:exon
so has part: feature:27086-27178:-1:exon
so has part: feature:26928-26993:-1:exon
so has part: feature:26669-26830:-1:exon

XP_038025287.1
type: Protein
SIO_000068: ncbiprotein

position:26669:-1
position: 26669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30604:-1
position: 30604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30359-30604:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:29985-30080:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:29382-29411:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:29124-29264:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:28979-29033:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:28796-28859:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:28608-28713:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:28323-28370:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:28103-28211:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:27836-27881:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:27652-27739:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:27451-27563:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:27273-27366:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:27086-27178:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:26928-26993:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:26669-26830:-1:exon

MRPS12
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
gene: MRPS12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(30714..31547)
location: region:30714-31547:-1
so has part: feature:30714-31547:-1:exon
subclass of: SO_0000010

119714266
type: Gene
SIO_000068: ncbigene

position:30714:-1
position: 30714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31547:-1
position: 31547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30714-31547:-1:exon

MRPS12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: MRPS12
product: mitochondrial ribosomal protein S12, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 121 samples with support for all annotated introns
transcript id: XM_038169362.1
SIO_010081: MRPS12
subclass of: SO_0000673
so part of: MRPS12
location: complement(join(30714..31188,31278..31352,31474..31547))
location: region:30714-31547:-1
so has part: feature:31474-31547:-1:exon
so has part: feature:31278-31352:-1:exon
so has part: feature:30714-31188:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:31474-31547:-1:exon

position:31474:-1
position: 31474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:31278-31352:-1:exon

position:31278:-1
position: 31278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31352:-1
position: 31352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:30714-31188:-1:exon

position:31188:-1
position: 31188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MRPS12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: MRPS12
product: mitochondrial ribosomal protein S12, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
transcript id: XM_038169361.1
SIO_010081: MRPS12
subclass of: SO_0000673
so part of: MRPS12
location: complement(join(30714..31188,31278..31352,31459..31482))
location: region:30714-31482:-1
so has part: feature:31459-31482:-1:exon
so has part: feature:31278-31352:-1:exon
so has part: feature:30714-31188:-1:exon

position:31482:-1
position: 31482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31459-31482:-1:exon

position:31459:-1
position: 31459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:31278-31352:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:30714-31188:-1:exon

MRPS12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: MRPS12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 28S ribosomal protein S12, mitochondrial isoform X1
translation: MAAGPTGAGSRKMALRNLLRAAASLRGCALGALPPAGKQAAAPGLQQAAGMATLNQMHRKGRPPPPPVKLGPTFGRPQLKGVVIKTLIRKPKKPNSANRKCARVRLSNGKEVVCFIPGEGHNLQEHHVVLVQGGRTQDLPGVKLTIVRGKYDCAHVQKKK
SIO_010081: MRPS12
subclass of: SO_0000673
so part of: MRPS12
location: complement(join(30791..31188,31278..31352,31459..31468))
location: region:30791-31468:-1
so has part: feature:31459-31468:-1:exon
so has part: feature:31278-31352:-1:exon
so has part: feature:30791-31188:-1:exon

XP_038025289.1
type: Protein
SIO_000068: ncbiprotein

position:30791:-1
position: 30791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31468:-1
position: 31468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31459-31468:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:31278-31352:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:30791-31188:-1:exon

MRPS12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: MRPS12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 28S ribosomal protein S12, mitochondrial isoform X2
translation: MALRNLLRAAASLRGCALGALPPAGKQAAAPGLQQAAGMATLNQMHRKGRPPPPPVKLGPTFGRPQLKGVVIKTLIRKPKKPNSANRKCARVRLSNGKEVVCFIPGEGHNLQEHHVVLVQGGRTQDLPGVKLTIVRGKYDCAHVQKKK
SIO_010081: MRPS12
subclass of: SO_0000673
so part of: MRPS12
location: complement(join(30791..31188,31278..31326))
location: region:30791-31326:-1
so has part: feature:31278-31326:-1:exon
so has part: feature:30791-31188:-1:exon

XP_038025290.1
type: Protein
SIO_000068: ncbiprotein

position:31326:-1
position: 31326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31278-31326:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:30791-31188:-1:exon

PAK4
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
gene: PAK4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 31663..41452
location: region:31663-41452:1
so has part: feature:31663-41452:1:exon
subclass of: SO_0000010

101801484
type: Gene
SIO_000068: ncbigene

position:31663:1
position: 31663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41452:1
position: 41452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31663-41452:1:exon

PAK4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: PAK4
product: p21 (RAC1) activated kinase 4
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 125 samples with support for all annotated introns
transcript id: XM_038169357.1
SIO_010081: PAK4
subclass of: SO_0000673
so part of: PAK4
location: join(31663..31733,32127..32210,36803..37026,37917..38535,39081..39533,39665..39798,39885..40011,40265..40390,40486..40620,40709..41452)
location: region:31663-41452:1
so has part: feature:31663-31733:1:exon
so has part: feature:32127-32210:1:exon
so has part: feature:36803-37026:1:exon
so has part: feature:37917-38535:1:exon
so has part: feature:39081-39533:1:exon
so has part: feature:39665-39798:1:exon
so has part: feature:39885-40011:1:exon
so has part: feature:40265-40390:1:exon
so has part: feature:40486-40620:1:exon
so has part: feature:40709-41452:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:31663-31733:1:exon

position:31733:1
position: 31733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:32127-32210:1:exon

position:32127:1
position: 32127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32210:1
position: 32210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:36803-37026:1:exon

position:36803:1
position: 36803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37026:1
position: 37026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:37917-38535:1:exon

position:37917:1
position: 37917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38535:1
position: 38535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:39081-39533:1:exon

position:39081:1
position: 39081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39533:1
position: 39533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:39665-39798:1:exon

position:39665:1
position: 39665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39798:1
position: 39798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:39885-40011:1:exon

position:39885:1
position: 39885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40011:1
position: 40011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:40265-40390:1:exon

position:40265:1
position: 40265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40390:1
position: 40390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:40486-40620:1:exon

position:40486:1
position: 40486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40620:1
position: 40620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:40709-41452:1:exon

position:40709:1
position: 40709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PAK4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: PAK4
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: serine/threonine-protein kinase PAK 4
translation: MFSKKKKRLEISAPSNFEHRVHTGYDQQEQKFTGLPRQWQGIIEESAKRPKPLVDPVCITAIQHGSQKTIVRGTKAAKDGSLSWLLDEFENMSVSRSNSLRRDSPPFPPRRDHLYQENGLSEGPPAARPHDARGKDKKLHGARGELEQGKERPRDGEEQRAHHPQQPRGQEPGPKGAGGRPPPPEYPRPPDRDCGEPVVRRERPEPCERRPKSTYAADSSPQPPRDKRPLSGPNMRTPNIPVSEGVMKTAQQTGRPFNTYPRADTDPGRGAGSQAEHRPGRPQEVASNGPVSGTSGSSRAPPPGPPRSKGGPEPPAGLTPHASDPHLARQPPAAAATAPPQQQQQQQPRSPQREPQRVSHEQFRAALQMVVDPGDPRSYLDNFIKIGEGSTGIVCIATIKSTGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVNKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGVMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNMHKVSPSLKGFLDRMLVRDPVQRATANELLKHPFLGKAGPPSCIVPLMRQNRMR
SIO_010081: PAK4
subclass of: SO_0000673
so part of: PAK4
location: join(36823..37026,37917..38535,39081..39533,39665..39798,39885..40011,40265..40390,40486..40620,40709..40864)
location: region:36823-40864:1
so has part: feature:36823-37026:1:exon
so has part: feature:37917-38535:1:exon
so has part: feature:39081-39533:1:exon
so has part: feature:39665-39798:1:exon
so has part: feature:39885-40011:1:exon
so has part: feature:40265-40390:1:exon
so has part: feature:40486-40620:1:exon
so has part: feature:40709-40864:1:exon

XP_038025285.1
type: Protein
SIO_000068: ncbiprotein

position:36823:1
position: 36823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40864:1
position: 40864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36823-37026:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:37917-38535:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:39081-39533:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:39665-39798:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:39885-40011:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:40265-40390:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:40486-40620:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:40709-40864:1:exon

SYCN
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
gene: SYCN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(41671..43449)
location: region:41671-43449:-1
so has part: feature:41671-43449:-1:exon
subclass of: SO_0000010

119714267
type: Gene
SIO_000068: ncbigene

position:41671:-1
position: 41671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43449:-1
position: 43449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41671-43449:-1:exon

SYCN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: SYCN
product: syncollin
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038169363.1
SIO_010081: SYCN
subclass of: SO_0000673
so part of: SYCN
location: complement(41671..43449)
location: region:41671-43449:-1
so has part: feature:41671-43449:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:41671-43449:-1:exon

SYCN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: SYCN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: syncollin
translation: MAVPVLVAVLAAVLAGAGAQCPTASDLRGVNGTRVCAELFTDDSPYYDQCCGGKSLVVECGADAPYVPWEWSGSVSSLVVGPRCQLTVWSLPGKHGKMKRFGAGAVPRLQEVRRGLFGNWNNAIRGYYCQCN
SIO_010081: SYCN
subclass of: SO_0000673
so part of: SYCN
location: complement(42027..42425)
location: region:42027-42425:-1
so has part: feature:42027-42425:-1:exon

XP_038025291.1
type: Protein
SIO_000068: ncbiprotein

position:42027:-1
position: 42027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42425:-1
position: 42425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42027-42425:-1:exon

LRFN1
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
gene: LRFN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(43581..48924)
location: region:43581-48924:-1
so has part: feature:43581-48924:-1:exon
subclass of: SO_0000010

119714264
type: Gene
SIO_000068: ncbigene

position:43581:-1
position: 43581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48924:-1
position: 48924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43581-48924:-1:exon

LRFN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: LRFN1
product: leucine rich repeat and fibronectin type III domain containing 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 85 samples with support for all annotated introns
transcript id: XM_038169358.1
SIO_010081: LRFN1
subclass of: SO_0000673
so part of: LRFN1
location: complement(join(43581..44431,44894..46289,46841..46888,48258..48924))
location: region:43581-48924:-1
so has part: feature:48258-48924:-1:exon
so has part: feature:46841-46888:-1:exon
so has part: feature:44894-46289:-1:exon
so has part: feature:43581-44431:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:48258-48924:-1:exon

position:48258:-1
position: 48258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:46841-46888:-1:exon

position:46841:-1
position: 46841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:46888:-1
position: 46888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:44894-46289:-1:exon

position:44894:-1
position: 44894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:46289:-1
position: 46289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:43581-44431:-1:exon

position:44431:-1
position: 44431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LRFN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: LRFN1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: leucine-rich repeat and fibronectin type III domain-containing protein 1
translation: MAKLLVPLVVLGAVAGAQRCPPRCLCPAAAPSPTLLCARTGLLAVPPSLDRGAVELRLADNFIGAVGRADFANMSSLVHLTLSRNGLRRLAPGAFADLRALRALHLDGNRLPALSGAQLRGLASLRHLILANNQLAAIEPAAFAAFAATVEDLDLSHNNLPALPWEAVAGMASLATLTLDHNLLERVPAGALAGLPRLARLDLTANRLRALPPVPGPPGPSLAAGGNPLHCNCELLWLRRLARPDGLESCASPPPLAGRLLWAVPEEELACRAPAIAGAAASPAAVLEGQPLRLGCAAAGDPPPALHWLGPDGRLVQNGSRRALGADGSLQLRVATLRDHGAFTCVASNAAGEAAARVQVAVLPLPVPRRDGEGEGEAQPGPEPSDMARAGGNESRPAGERRIVAAELTASSARIRWLPQRHVPGLRMFQIQYNSSLDDSLVYRLLPPSSRSFVLRDLAAGREYDLCVSALYAEGSAAPPATRALGCVRFATAGGSPGCAAPRPHFLGGTVIIVIGAAIAASVLVFILILTARYKAARRLPAANVASVCSQTNGTHRAPEPEPPPPPLPPPSAPPAPPVLAPLGAPGGARGLFPSHSYPRRARTRRHGSLPRLDAPDALPTLRPSFGSTHWMLESTV
SIO_010081: LRFN1
subclass of: SO_0000673
so part of: LRFN1
location: complement(join(43849..44431,44894..46225))
location: region:43849-46225:-1
so has part: feature:44894-46225:-1:exon
so has part: feature:43849-44431:-1:exon

XP_038025286.1
type: Protein
SIO_000068: ncbiprotein

position:43849:-1
position: 43849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:46225:-1
position: 46225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44894-46225:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:43849-44431:-1:exon

SAMD4B
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
gene: SAMD4B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 49343..55220
location: region:49343-55220:1
so has part: feature:49343-55220:1:exon
subclass of: SO_0000010

119714268
type: Gene
SIO_000068: ncbigene

position:49343:1
position: 49343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55220:1
position: 55220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49343-55220:1:exon

SAMD4B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: SAMD4B
product: sterile alpha motif domain containing 4B
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038169364.1
SIO_010081: SAMD4B
subclass of: SO_0000673
so part of: SAMD4B
location: join(49343..50006,50654..50929,50973..51170,51770..52031,52135..52244,52345..52431,52545..52795,52876..52961,53068..53186,53699..53904,54378..54483,54596..54679,54793..55220)
location: region:49343-55220:1
so has part: feature:49343-50006:1:exon
so has part: feature:50654-50929:1:exon
so has part: feature:50973-51170:1:exon
so has part: feature:51770-52031:1:exon
so has part: feature:52135-52244:1:exon
so has part: feature:52345-52431:1:exon
so has part: feature:52545-52795:1:exon
so has part: feature:52876-52961:1:exon
so has part: feature:53068-53186:1:exon
so has part: feature:53699-53904:1:exon
so has part: feature:54378-54483:1:exon
so has part: feature:54596-54679:1:exon
so has part: feature:54793-55220:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:49343-50006:1:exon

position:50006:1
position: 50006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:50654-50929:1:exon

position:50654:1
position: 50654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50929:1
position: 50929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:50973-51170:1:exon

position:50973:1
position: 50973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51170:1
position: 51170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:51770-52031:1:exon

position:51770:1
position: 51770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52031:1
position: 52031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:52135-52244:1:exon

position:52135:1
position: 52135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52244:1
position: 52244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:52345-52431:1:exon

position:52345:1
position: 52345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52431:1
position: 52431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:52545-52795:1:exon

position:52545:1
position: 52545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52795:1
position: 52795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:52876-52961:1:exon

position:52876:1
position: 52876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:52961:1
position: 52961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:53068-53186:1:exon

position:53068:1
position: 53068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53186:1
position: 53186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:53699-53904:1:exon

position:53699:1
position: 53699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53904:1
position: 53904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:54378-54483:1:exon

position:54378:1
position: 54378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54483:1
position: 54483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:54596-54679:1:exon

position:54596:1
position: 54596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54679:1
position: 54679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:54793-55220:1:exon

position:54793:1
position: 54793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SAMD4B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: SAMD4B
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: protein Smaug homolog 2
translation: MMFRDQVGIVAGWFKAWNECEQTVALLSLLKRVTRTQARFLQLCLEHSLADCADIHLLEAEANSAAAISQWPQEPAEAAVALLLAHLPLLQPGNAAAKAEYMKRLQKVLAYAIESNRCVEESRQLLSYALIHPATTLDDRSALALWLGHLEERLAGAPPPPPPPPPPPPPPPPPRRAPHDWPEHGPPEIGPPWPEAAPRENGHPPPFHPPPAAGSGGNGLGGAALPCQLHPSPLKRSLSLVPGSPQGGGGEWPGGGGGEEPGGPPPPPRPPFGEHAPLSPQSSVASSGSEQTEEPPGGRNTFQEDGSGMKDVPSWLKSLRLHKYAALFSQMTYEEMMTLTEHHLESQNVTKGARHKIALSIQKLRERQSVLKALEKDILEGGNLWTALQELQQIMVTPIKAFRPPPAPPANTGAPPDAAAAPPGAADAFAPHPAADPEAPAAPVPDGDIPGQFTRVMGKVCTQLLVSRPDEENITSYLQLLEKCLSHEAFTETQKKRLLSWKQQVLKLLRAFPKKVPLEGPGYRPPKGWAFGSNSLPIAGSVGGGAGGRRGQRPFALPPRALPPTRLGLLGPAGGGPAPRPPLGGPPPPLGTQGRQSLWFGSGGAAGRSAVQRTHSLPVHPSPQALLAFPQECPLPGTDLEINPTLESLCLSMTEHALGDGTDKTSTI
SIO_010081: SAMD4B
subclass of: SO_0000673
so part of: SAMD4B
location: join(49811..50006,50654..50929,50973..51170,51770..52031,52135..52244,52345..52431,52545..52795,52876..52961,53068..53186,53699..53904,54378..54483,54596..54679,54793..54821)
location: region:49811-54821:1
so has part: feature:49811-50006:1:exon
so has part: feature:50654-50929:1:exon
so has part: feature:50973-51170:1:exon
so has part: feature:51770-52031:1:exon
so has part: feature:52135-52244:1:exon
so has part: feature:52345-52431:1:exon
so has part: feature:52545-52795:1:exon
so has part: feature:52876-52961:1:exon
so has part: feature:53068-53186:1:exon
so has part: feature:53699-53904:1:exon
so has part: feature:54378-54483:1:exon
so has part: feature:54596-54679:1:exon
so has part: feature:54793-54821:1:exon

XP_038025292.1
type: Protein
SIO_000068: ncbiprotein

position:49811:1
position: 49811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54821:1
position: 54821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49811-50006:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:50654-50929:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:50973-51170:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:51770-52031:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:52135-52244:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:52345-52431:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:52545-52795:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:52876-52961:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:53068-53186:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:53699-53904:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:54378-54483:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:54596-54679:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:54793-54821:1:exon

PAF1
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
gene: PAF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(55656..59357)
location: region:55656-59357:-1
so has part: feature:55656-59357:-1:exon
subclass of: SO_0000010

119714273
type: Gene
SIO_000068: ncbigene

position:55656:-1
position: 55656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:59357:-1
position: 59357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55656-59357:-1:exon

PAF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: PAF1
product: PAF1 homolog, Paf1/RNA polymerase II complex component
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038169369.1
SIO_010081: PAF1
subclass of: SO_0000673
so part of: PAF1
location: complement(join(55656..55966,56001..56184,56277..56364,56459..56564,56665..56793,57016..57132,57241..57344,57431..57499,57607..57712,57815..57916,58013..58079,58193..58314,58404..58496,59117..59146,59245..59357))
location: region:55656-59357:-1
so has part: feature:59245-59357:-1:exon
so has part: feature:59117-59146:-1:exon
so has part: feature:58404-58496:-1:exon
so has part: feature:58193-58314:-1:exon
so has part: feature:58013-58079:-1:exon
so has part: feature:57815-57916:-1:exon
so has part: feature:57607-57712:-1:exon
so has part: feature:57431-57499:-1:exon
so has part: feature:57241-57344:-1:exon
so has part: feature:57016-57132:-1:exon
so has part: feature:56665-56793:-1:exon
so has part: feature:56459-56564:-1:exon
so has part: feature:56277-56364:-1:exon
so has part: feature:56001-56184:-1:exon
so has part: feature:55656-55966:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:59245-59357:-1:exon

position:59245:-1
position: 59245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:59117-59146:-1:exon

position:59117:-1
position: 59117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:59146:-1
position: 59146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:58404-58496:-1:exon

position:58404:-1
position: 58404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:58496:-1
position: 58496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:58193-58314:-1:exon

position:58193:-1
position: 58193
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:58314:-1
position: 58314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:58013-58079:-1:exon

position:58013:-1
position: 58013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:58079:-1
position: 58079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:57815-57916:-1:exon

position:57815:-1
position: 57815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57916:-1
position: 57916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:57607-57712:-1:exon

position:57607:-1
position: 57607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57712:-1
position: 57712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:57431-57499:-1:exon

position:57431:-1
position: 57431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57499:-1
position: 57499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:57241-57344:-1:exon

position:57241:-1
position: 57241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57344:-1
position: 57344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:57016-57132:-1:exon

position:57016:-1
position: 57016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57132:-1
position: 57132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:56665-56793:-1:exon

position:56665:-1
position: 56665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:56793:-1
position: 56793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:56459-56564:-1:exon

position:56459:-1
position: 56459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:56564:-1
position: 56564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:56277-56364:-1:exon

position:56277:-1
position: 56277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:56364:-1
position: 56364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:56001-56184:-1:exon

position:56001:-1
position: 56001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:56184:-1
position: 56184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:55656-55966:-1:exon

position:55966:-1
position: 55966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PAF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: PAF1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: RNA polymerase II-associated factor 1 homolog
translation: MAPTIQTQAQREEPGHRPSSHRTLPERSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPSVLLDPADEKLLEEEIQAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGVSNEKPEVKIGVSVKQQFTEEEIYKDRDSQIAAIEKTFEDAQKAITQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKDTSGPAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLRKRKRDQEEEMDYAPEDVYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRARAGVQSGTNAVLVVKHRDMNEKELEAQEARRAQLENHEPEEEEEEEMEAEKEAPGSDEEREKGSESEGAGSGEEEEEAEGSGGAGGGGGGSSSEQGGSARSEDEAEEEEEEEEEEEEEGGSAAARAARDQEEIFGSDDDEEEEEEEEEEEEEEEESEGGGSEGGGPPRSPRLSPSEASEEEEEEEESASEASDSSSD
SIO_010081: PAF1
subclass of: SO_0000673
so part of: PAF1
location: complement(join(55725..55966,56001..56184,56277..56364,56459..56564,56665..56793,57016..57132,57241..57344,57431..57499,57607..57712,57815..57916,58013..58079,58193..58314,58404..58496,59117..59146,59245..59294))
location: region:55725-59294:-1
so has part: feature:59245-59294:-1:exon
so has part: feature:59117-59146:-1:exon
so has part: feature:58404-58496:-1:exon
so has part: feature:58193-58314:-1:exon
so has part: feature:58013-58079:-1:exon
so has part: feature:57815-57916:-1:exon
so has part: feature:57607-57712:-1:exon
so has part: feature:57431-57499:-1:exon
so has part: feature:57241-57344:-1:exon
so has part: feature:57016-57132:-1:exon
so has part: feature:56665-56793:-1:exon
so has part: feature:56459-56564:-1:exon
so has part: feature:56277-56364:-1:exon
so has part: feature:56001-56184:-1:exon
so has part: feature:55725-55966:-1:exon

XP_038025297.1
type: Protein
SIO_000068: ncbiprotein

position:55725:-1
position: 55725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:59294:-1
position: 59294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59245-59294:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:59117-59146:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:58404-58496:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:58193-58314:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:58013-58079:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:57815-57916:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:57607-57712:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:57431-57499:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:57241-57344:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:57016-57132:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:56665-56793:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:56459-56564:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:56277-56364:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:56001-56184:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:55725-55966:-1:exon

MED29
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
gene: MED29
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 59367..60977
location: region:59367-60977:1
so has part: feature:59367-60977:1:exon
subclass of: SO_0000010

119714272
type: Gene
SIO_000068: ncbigene

position:59367:1
position: 59367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60977:1
position: 60977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59367-60977:1:exon

MED29
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: MED29
product: mediator complex subunit 29
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 126 samples with support for all annotated introns
transcript id: XM_038169368.1
SIO_010081: MED29
subclass of: SO_0000673
so part of: MED29
location: join(59367..59613,59953..60011,60244..60328,60621..60977)
location: region:59367-60977:1
so has part: feature:59367-59613:1:exon
so has part: feature:59953-60011:1:exon
so has part: feature:60244-60328:1:exon
so has part: feature:60621-60977:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:59367-59613:1:exon

position:59613:1
position: 59613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:59953-60011:1:exon

position:59953:1
position: 59953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60011:1
position: 60011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:60244-60328:1:exon

position:60244:1
position: 60244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60328:1
position: 60328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:60621-60977:1:exon

position:60621:1
position: 60621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MED29
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: MED29
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mediator of RNA polymerase II transcription subunit 29
translation: MAAPPQPPPPPGPGPGPPSAPAPPLAPGAGPAQGAGPGPPLPAQVAAAQAQDFDPVQRFRLLIPQLKESLQTLMKVAAQNLVQNSNIDNGQKSADGALQRFDKSLEEFYALCDQLELCLRLAHECLSQSFDSAKHAPALVPAAPKGEGGAAGGGESLPYTQYLPLIKAQIAGAKDIHNALLEGANKITGKLPPPGGP
SIO_010081: MED29
subclass of: SO_0000673
so part of: MED29
location: join(59401..59613,59953..60011,60244..60328,60621..60857)
location: region:59401-60857:1
so has part: feature:59401-59613:1:exon
so has part: feature:59953-60011:1:exon
so has part: feature:60244-60328:1:exon
so has part: feature:60621-60857:1:exon

XP_038025296.1
type: Protein
SIO_000068: ncbiprotein

position:59401:1
position: 59401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60857:1
position: 60857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59401-59613:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:59953-60011:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:60244-60328:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:60621-60857:1:exon

LOC119714271
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
gene: LOC119714271
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 61285..63316
location: region:61285-63316:1
so has part: feature:61285-63316:1:exon
subclass of: SO_0000010

119714271
type: Gene
SIO_000068: ncbigene

position:61285:1
position: 61285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63316:1
position: 63316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:61285-63316:1:exon

LOC119714271
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: LOC119714271
product: mRNA decay activator protein ZFP36-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 108 samples with support for all annotated introns
transcript id: XM_038169367.1
SIO_010081: LOC119714271
subclass of: SO_0000673
so part of: LOC119714271
location: join(61285..61805,62085..63316)
location: region:61285-63316:1
so has part: feature:61285-61805:1:exon
so has part: feature:62085-63316:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:61285-61805:1:exon

position:61805:1
position: 61805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:62085-63316:1:exon

position:62085:1
position: 62085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC119714271
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: LOC119714271
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mRNA decay activator protein ZFP36-like
translation: MAAAATGPAPEPLRQVLFGAQSPRPPSPEPPRPPRSPWGPPPDLGRLLRSLSAPSGRPVPPPPGFPPRHHGAPPGLNRPAGGASLELLLAALTLTSDLEPAGGALPPLSAPPSPLASPLTPGGPSPPLSLHRLPSSSSSSSSLPPTPLLAPPEASPSPPASPPSLLYKTELCRPFSATGRCRYGSRCQFAHGPGELRGLRRHPKYRTQPCSTFLRCGSCPYGPRCHFLHGPPAPLLLSDGGGTAAGPPPGSPRRLPVFDRISVAE
SIO_010081: LOC119714271
subclass of: SO_0000673
so part of: LOC119714271
location: join(61761..61805,62085..62837)
location: region:61761-62837:1
so has part: feature:61761-61805:1:exon
so has part: feature:62085-62837:1:exon

XP_038025295.1
type: Protein
SIO_000068: ncbiprotein

position:61761:1
position: 61761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:62837:1
position: 62837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:61761-61805:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:62085-62837:1:exon

SUPT5H
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
gene: SUPT5H
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 63557..71565
location: region:63557-71565:1
so has part: feature:63557-71565:1:exon
subclass of: SO_0000010

119714270
type: Gene
SIO_000068: ncbigene

position:63557:1
position: 63557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:71565:1
position: 71565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63557-71565:1:exon

SUPT5H
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: SUPT5H
product: SPT5 homolog, DSIF elongation factor subunit, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 118 samples with support for all annotated introns
transcript id: XM_038169365.1
SIO_010081: SUPT5H
subclass of: SO_0000673
so part of: SUPT5H
location: join(63557..63751,64137..64290,64375..64440,65016..65027,65132..65201,65293..65361,65464..65529,65673..65703,65801..65869,65948..66199,66290..66379,66468..66538,66669..66774,67051..67144,67226..67362,67470..67625,67723..67869,68094..68240,68416..68541,68641..68725,68827..68931,69047..69149,69250..69377,69601..69706,69843..70001,70263..70431,70512..70715,70825..70920,71247..71565)
location: region:63557-71565:1
so has part: feature:63557-63751:1:exon
so has part: feature:64137-64290:1:exon
so has part: feature:64375-64440:1:exon
so has part: feature:65016-65027:1:exon
so has part: feature:65132-65201:1:exon
so has part: feature:65293-65361:1:exon
so has part: feature:65464-65529:1:exon
so has part: feature:65673-65703:1:exon
so has part: feature:65801-65869:1:exon
so has part: feature:65948-66199:1:exon
so has part: feature:66290-66379:1:exon
so has part: feature:66468-66538:1:exon
so has part: feature:66669-66774:1:exon
so has part: feature:67051-67144:1:exon
so has part: feature:67226-67362:1:exon
so has part: feature:67470-67625:1:exon
so has part: feature:67723-67869:1:exon
so has part: feature:68094-68240:1:exon
so has part: feature:68416-68541:1:exon
so has part: feature:68641-68725:1:exon
so has part: feature:68827-68931:1:exon
so has part: feature:69047-69149:1:exon
so has part: feature:69250-69377:1:exon
so has part: feature:69601-69706:1:exon
so has part: feature:69843-70001:1:exon
so has part: feature:70263-70431:1:exon
so has part: feature:70512-70715:1:exon
so has part: feature:70825-70920:1:exon
so has part: feature:71247-71565:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:63557-63751:1:exon

position:63751:1
position: 63751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:64137-64290:1:exon

position:64137:1
position: 64137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64290:1
position: 64290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:64375-64440:1:exon

position:64375:1
position: 64375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64440:1
position: 64440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:65016-65027:1:exon

position:65016:1
position: 65016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65027:1
position: 65027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:65132-65201:1:exon

position:65132:1
position: 65132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65201:1
position: 65201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:65293-65361:1:exon

position:65293:1
position: 65293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65361:1
position: 65361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:65464-65529:1:exon

position:65464:1
position: 65464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65529:1
position: 65529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:65673-65703:1:exon

position:65673:1
position: 65673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65703:1
position: 65703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:65801-65869:1:exon

position:65801:1
position: 65801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65869:1
position: 65869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:65948-66199:1:exon

position:65948:1
position: 65948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66199:1
position: 66199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:66290-66379:1:exon

position:66290:1
position: 66290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66379:1
position: 66379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:66468-66538:1:exon

position:66468:1
position: 66468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66538:1
position: 66538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:66669-66774:1:exon

position:66669:1
position: 66669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:66774:1
position: 66774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:67051-67144:1:exon

position:67051:1
position: 67051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67144:1
position: 67144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:67226-67362:1:exon

position:67226:1
position: 67226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67362:1
position: 67362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:67470-67625:1:exon

position:67470:1
position: 67470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67625:1
position: 67625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:67723-67869:1:exon

position:67723:1
position: 67723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67869:1
position: 67869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:68094-68240:1:exon

position:68094:1
position: 68094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68240:1
position: 68240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:68416-68541:1:exon

position:68416:1
position: 68416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68541:1
position: 68541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:68641-68725:1:exon

position:68641:1
position: 68641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68725:1
position: 68725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:68827-68931:1:exon

position:68827:1
position: 68827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68931:1
position: 68931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:69047-69149:1:exon

position:69047:1
position: 69047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69149:1
position: 69149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:69250-69377:1:exon

position:69250:1
position: 69250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69377:1
position: 69377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:69601-69706:1:exon

position:69601:1
position: 69601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69706:1
position: 69706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:69843-70001:1:exon

position:69843:1
position: 69843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:70001:1
position: 70001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:70263-70431:1:exon

position:70263:1
position: 70263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:70431:1
position: 70431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:70512-70715:1:exon

position:70512:1
position: 70512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:70715:1
position: 70715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:70825-70920:1:exon

position:70825:1
position: 70825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:70920:1
position: 70920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:71247-71565:1:exon

position:71247:1
position: 71247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SUPT5H
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: SUPT5H
product: SPT5 homolog, DSIF elongation factor subunit, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 62 samples with support for all annotated introns
transcript id: XM_038169366.1
SIO_010081: SUPT5H
subclass of: SO_0000673
so part of: SUPT5H
location: join(63557..63751,64137..64290,64375..64440,65132..65201,65293..65361,65464..65529,65673..65703,65801..65869,65948..66199,66290..66379,66468..66538,66669..66774,67051..67144,67226..67362,67470..67625,67723..67869,68094..68240,68416..68541,68641..68725,68827..68931,69047..69149,69250..69377,69601..69706,69843..70001,70263..70431,70512..70715,70825..70920,71247..71565)
location: region:63557-71565:1
so has part: feature:63557-63751:1:exon
so has part: feature:64137-64290:1:exon
so has part: feature:64375-64440:1:exon
so has part: feature:65132-65201:1:exon
so has part: feature:65293-65361:1:exon
so has part: feature:65464-65529:1:exon
so has part: feature:65673-65703:1:exon
so has part: feature:65801-65869:1:exon
so has part: feature:65948-66199:1:exon
so has part: feature:66290-66379:1:exon
so has part: feature:66468-66538:1:exon
so has part: feature:66669-66774:1:exon
so has part: feature:67051-67144:1:exon
so has part: feature:67226-67362:1:exon
so has part: feature:67470-67625:1:exon
so has part: feature:67723-67869:1:exon
so has part: feature:68094-68240:1:exon
so has part: feature:68416-68541:1:exon
so has part: feature:68641-68725:1:exon
so has part: feature:68827-68931:1:exon
so has part: feature:69047-69149:1:exon
so has part: feature:69250-69377:1:exon
so has part: feature:69601-69706:1:exon
so has part: feature:69843-70001:1:exon
so has part: feature:70263-70431:1:exon
so has part: feature:70512-70715:1:exon
so has part: feature:70825-70920:1:exon
so has part: feature:71247-71565:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:63557-63751:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:64137-64290:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:64375-64440:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:65132-65201:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:65293-65361:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:65464-65529:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:65673-65703:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:65801-65869:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:65948-66199:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:66290-66379:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:66468-66538:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:66669-66774:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:67051-67144:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:67226-67362:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:67470-67625:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:67723-67869:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:68094-68240:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:68416-68541:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:68641-68725:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:68827-68931:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:69047-69149:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:69250-69377:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:69601-69706:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:69843-70001:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:70263-70431:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:70512-70715:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:70825-70920:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:71247-71565:1:exon

SUPT5H
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: SUPT5H
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription elongation factor SPT5 isoform X1
translation: MSDSDDSNFSEEESERSSEAEEAEAEEERASAAGSEKEEAEEEEEEEEYDEEEEEEDDDRPAKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRSGARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRMGYWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGIYKDDIAQVDYVEPSQNQISLKMIPRIDFDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVAGFTPMSPRITSPMHPSGAGQRGGFGGGGMSRGRGRRDNDLIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRADEDFEYGFDDEPTPSPQGYGGTPNPQTPGYPDPSSPQVTQPYNPQTPGTPAMYNTDQFSPYAVPSPQGSYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHTPGSGIEQSSSDWVTTDIQVKVRDTYLDSQAVGQTGIIRSVTGGMCSVYLKDSEKVVSISSEHLEPVTPTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLDEQLKILNLRFLGKLLEA
SIO_010081: SUPT5H
subclass of: SO_0000673
so part of: SUPT5H
location: join(63680..63751,64137..64290,64375..64440,65016..65027,65132..65201,65293..65361,65464..65529,65673..65703,65801..65869,65948..66199,66290..66379,66468..66538,66669..66774,67051..67144,67226..67362,67470..67625,67723..67869,68094..68240,68416..68541,68641..68725,68827..68931,69047..69149,69250..69377,69601..69706,69843..70001,70263..70431,70512..70715,70825..70920,71247..71390)
location: region:63680-71390:1
so has part: feature:63680-63751:1:exon
so has part: feature:64137-64290:1:exon
so has part: feature:64375-64440:1:exon
so has part: feature:65016-65027:1:exon
so has part: feature:65132-65201:1:exon
so has part: feature:65293-65361:1:exon
so has part: feature:65464-65529:1:exon
so has part: feature:65673-65703:1:exon
so has part: feature:65801-65869:1:exon
so has part: feature:65948-66199:1:exon
so has part: feature:66290-66379:1:exon
so has part: feature:66468-66538:1:exon
so has part: feature:66669-66774:1:exon
so has part: feature:67051-67144:1:exon
so has part: feature:67226-67362:1:exon
so has part: feature:67470-67625:1:exon
so has part: feature:67723-67869:1:exon
so has part: feature:68094-68240:1:exon
so has part: feature:68416-68541:1:exon
so has part: feature:68641-68725:1:exon
so has part: feature:68827-68931:1:exon
so has part: feature:69047-69149:1:exon
so has part: feature:69250-69377:1:exon
so has part: feature:69601-69706:1:exon
so has part: feature:69843-70001:1:exon
so has part: feature:70263-70431:1:exon
so has part: feature:70512-70715:1:exon
so has part: feature:70825-70920:1:exon
so has part: feature:71247-71390:1:exon

XP_038025293.1
type: Protein
SIO_000068: ncbiprotein

position:63680:1
position: 63680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:71390:1
position: 71390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63680-63751:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:64137-64290:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:64375-64440:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:65016-65027:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:65132-65201:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:65293-65361:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:65464-65529:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:65673-65703:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:65801-65869:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:65948-66199:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:66290-66379:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:66468-66538:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:66669-66774:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:67051-67144:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:67226-67362:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:67470-67625:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:67723-67869:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:68094-68240:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:68416-68541:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:68641-68725:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:68827-68931:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:69047-69149:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:69250-69377:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:69601-69706:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:69843-70001:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:70263-70431:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:70512-70715:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:70825-70920:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:71247-71390:1:exon

SUPT5H
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: SUPT5H
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription elongation factor SPT5 isoform X2
translation: MSDSDDSNFSEEESERSSEAEEAEAEEERASAAGSEKEEAEEEEEEEEYDEEEEEEDDDRPAKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKASNIDNVVLDEDRSGARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRMGYWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGIYKDDIAQVDYVEPSQNQISLKMIPRIDFDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVAGFTPMSPRITSPMHPSGAGQRGGFGGGGMSRGRGRRDNDLIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRADEDFEYGFDDEPTPSPQGYGGTPNPQTPGYPDPSSPQVTQPYNPQTPGTPAMYNTDQFSPYAVPSPQGSYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHTPGSGIEQSSSDWVTTDIQVKVRDTYLDSQAVGQTGIIRSVTGGMCSVYLKDSEKVVSISSEHLEPVTPTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLDEQLKILNLRFLGKLLEA
SIO_010081: SUPT5H
subclass of: SO_0000673
so part of: SUPT5H
location: join(63680..63751,64137..64290,64375..64440,65132..65201,65293..65361,65464..65529,65673..65703,65801..65869,65948..66199,66290..66379,66468..66538,66669..66774,67051..67144,67226..67362,67470..67625,67723..67869,68094..68240,68416..68541,68641..68725,68827..68931,69047..69149,69250..69377,69601..69706,69843..70001,70263..70431,70512..70715,70825..70920,71247..71390)
location: region:63680-71390:1
so has part: feature:63680-63751:1:exon
so has part: feature:64137-64290:1:exon
so has part: feature:64375-64440:1:exon
so has part: feature:65132-65201:1:exon
so has part: feature:65293-65361:1:exon
so has part: feature:65464-65529:1:exon
so has part: feature:65673-65703:1:exon
so has part: feature:65801-65869:1:exon
so has part: feature:65948-66199:1:exon
so has part: feature:66290-66379:1:exon
so has part: feature:66468-66538:1:exon
so has part: feature:66669-66774:1:exon
so has part: feature:67051-67144:1:exon
so has part: feature:67226-67362:1:exon
so has part: feature:67470-67625:1:exon
so has part: feature:67723-67869:1:exon
so has part: feature:68094-68240:1:exon
so has part: feature:68416-68541:1:exon
so has part: feature:68641-68725:1:exon
so has part: feature:68827-68931:1:exon
so has part: feature:69047-69149:1:exon
so has part: feature:69250-69377:1:exon
so has part: feature:69601-69706:1:exon
so has part: feature:69843-70001:1:exon
so has part: feature:70263-70431:1:exon
so has part: feature:70512-70715:1:exon
so has part: feature:70825-70920:1:exon
so has part: feature:71247-71390:1:exon

XP_038025294.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:63680-63751:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:64137-64290:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:64375-64440:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:65132-65201:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:65293-65361:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:65464-65529:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:65673-65703:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:65801-65869:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:65948-66199:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:66290-66379:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:66468-66538:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:66669-66774:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:67051-67144:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:67226-67362:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:67470-67625:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:67723-67869:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:68094-68240:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:68416-68541:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:68641-68725:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:68827-68931:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:69047-69149:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:69250-69377:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:69601-69706:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:69843-70001:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:70263-70431:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:70512-70715:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:70825-70920:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:71247-71390:1:exon

LOC101802760
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
alternative label: FFAR2
gene: LOC101802760
gene synonym: FFAR2
note: free fatty acid receptor 3; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
so part of: sequence
location: complement(85922..89251)
location: region:85922-89251:-1
so has part: feature:85922-89251:-1:exon
subclass of: SO_0000010

101802760
type: Gene
SIO_000068: ncbigene

position:85922:-1
position: 85922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:89251:-1
position: 89251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85922-89251:-1:exon

LOC101802760
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
alternative label: FFAR2
gene: LOC101802760
gene synonym: FFAR2
product: free fatty acid receptor 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns
transcript id: XM_038169342.1
SIO_010081: LOC101802760
subclass of: SO_0000673
so part of: LOC101802760
location: complement(join(85922..88056,88966..89251))
location: region:85922-89251:-1
so has part: feature:88966-89251:-1:exon
so has part: feature:85922-88056:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:88966-89251:-1:exon

position:88966:-1
position: 88966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:85922-88056:-1:exon

position:88056:-1
position: 88056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC101802760
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
alternative label: FFAR2
gene: LOC101802760
gene synonym: FFAR2
product: free fatty acid receptor 3
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001310344.1
SIO_010081: LOC101802760
subclass of: SO_0000673
so part of: LOC101802760
location: complement(86621..88052)
location: region:86621-88052:-1
so has part: feature:86621-88052:-1:exon

position:86621:-1
position: 86621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:88052:-1
position: 88052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:86621-88052:-1:exon

LOC101802760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
alternative label: FFAR2
gene: LOC101802760
gene synonym: FFAR2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: free fatty acid receptor 3 isoform X1
translation: MLILIAYVLTFIVGLPANIFTFVTLLCKARRRVNPADILLLNLTIADLFLLLFLPFKMAEAAADMTWPLPIVLCPVANFCFYSSIYLSSLFLAALSVERYLGVVFPLQFKNRRRLGRTMVASAFLWLLACSHCSIVFVAQYHDDGHRQSTVSKLGSFVDNSSRGFRPDGSMVNGFKPGGYGMSNPDGFNRNSFNPSGPIISSSDGPISTGFSPSSSGVSSSDDFNSKVFKIYNHNGSMVNGSKTSNGDISVPNGSRISSPSGPKTYNSKVFTNNVTTIPGISTADVSWISDIHSMTVPNHLAASRSHNDTNSNSTYKCYDDFSQEQLSFVLPLRLELFLVLFLLPFAVTVFCYINFVRALLARPNIPLEKKQRAVGLAVATMVNFGVCFAPYNISHVVGFVLHKSPEWRSYILFLTSLNAALDPFIFYFSSTAIQKAVAGVVVAVRDKLRAMVVCCYGE
SIO_010081: LOC101802760
subclass of: SO_0000673
so part of: LOC101802760
location: complement(86662..88041)
location: region:86662-88041:-1
so has part: feature:86662-88041:-1:exon

XP_038025270.1
type: Protein
SIO_000068: ncbiprotein

position:86662:-1
position: 86662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:88041:-1
position: 88041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:86662-88041:-1:exon

LOC101802760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
alternative label: FFAR2
gene: LOC101802760
gene synonym: FFAR2
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: free fatty acid receptor 3
translation: MLILIAYVLTFIVGLPANIFTFVTLLCKARRRVNPADILLLNLTIADLFLLLFLPFKMAEAAADMTWPLPIVLCPVANFCFYSSIYLSSLFLAALSVERYLGVVFPLQFKNRRRLGRTMVASAFLWLLACSHCSIVFVAQYHDDGHRQSTVSKLGSFVDNSSRGFRPDGSMVNGFKPGGYGMSNPDGFNRNSFNPSGPIISSSDGPISTGFSPSSSGVSSSDDFNSKVFKIYNHNGSMVNGSKTSNGDISVPNGSRISSPSGPKTYNSKVFTNNVTTIPGISTADVSWISDIHSMTVPNHLAASRSHNDTNSNSTYKCYDDFSQEQLSFVLPLRLELFLVLFLLPFAVTVFCYINFVRALLARPNIPLEKKQRAVGLAVATMVNFGVCFAPYNISHVVGFVLHKSPEWRSYILFLTSLNAALDPFIFYFSSTAIQKAVAGVVVAVRDKLRAMVVCCYGE
SIO_010081: LOC101802760
subclass of: SO_0000673
so part of: LOC101802760
location: complement(86662..88041)
location: region:86662-88041:-1
so has part: feature:86662-88041:-1:exon

NP_001297273.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:86662-88041:-1:exon

LOC106018249
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
alternative label: FFAR3
gene: LOC106018249
gene synonym: FFAR3
note: free fatty acid receptor 3-like; Derived by automated computational analysis using gene prediction method: BestRefSeq.
so part of: sequence
location: complement(90225..91425)
location: region:90225-91425:-1
so has part: feature:90225-91425:-1:exon
subclass of: SO_0000010

106018249
type: Gene
SIO_000068: ncbigene

position:90225:-1
position: 90225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:91425:-1
position: 91425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:90225-91425:-1:exon

LOC106018249
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
alternative label: FFAR3
gene: LOC106018249
gene synonym: FFAR3
product: free fatty acid receptor 3-like
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001310825.1
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 2 substitutions compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001310825.1
SIO_010081: LOC106018249
subclass of: SO_0000673
so part of: LOC106018249
location: complement(90225..91425)
location: region:90225-91425:-1
so has part: feature:90225-91425:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:90225-91425:-1:exon

LOC106018249
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
alternative label: FFAR3
gene: LOC106018249
gene synonym: FFAR3
inference: similar to AA sequence (same species):RefSeq:NP_001297754.1
exception: annotated by transcript or proteomic data
note: The RefSeq protein has 1 substitution compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: free fatty acid receptor 3-like
translation: MSAPPFAINHRLCLVVYAGAFTLGLPLNLVALVALGVAARRRRLLPTDVLLLNLTVADLALVASLPVRMAEAAWEATWKLPPALCPLFVFLFFTSIYLTTLSLTALSVDRYLSAAFPVQYRQRRRAAHAAVAAAGSWAAALGHCSVVYVARPGAAGNGTACYTRFAGPQLATLLALRLEIFLVLFCLPLAITAFCYGRLVCIVAALPTAALGRKRRVVALAAATMAAFILCFAPFNVSHVVGYLRQENPPWRAYAVLLTTLNACLDPLIFCFSSAALRRGLRQVWDAMGLGSLRARCRAPSERSGGLPGGAGGKALGLLACLGVGGAELEASQGASGLREPQGRALEAWGSCGGPQTSGDGLGGDKGQSQAGASGVAVGPWAGLCDLG
SIO_010081: LOC106018249
subclass of: SO_0000673
so part of: LOC106018249
location: complement(90243..91409)
location: region:90243-91409:-1
so has part: feature:90243-91409:-1:exon

NP_001297754.1
type: Protein
SIO_000068: ncbiprotein

position:90243:-1
position: 90243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:91409:-1
position: 91409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:90243-91409:-1:exon

CD22
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
gene: CD22
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(91905..97848)
location: region:91905-97848:-1
so has part: feature:91905-97848:-1:exon
subclass of: SO_0000010

119714256
type: Gene
SIO_000068: ncbigene

position:91905:-1
position: 91905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:97848:-1
position: 97848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:91905-97848:-1:exon

CD22
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: CD22
product: CD22 molecule
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038169345.1
SIO_010081: CD22
subclass of: SO_0000673
so part of: CD22
location: complement(join(91905..92531,92631..92688,92807..92904,92982..93057,93181..93280,93375..93638,93839..94069,94439..94702,95265..95519,95853..96113,96415..96732,96811..97132,97423..97848))
location: region:91905-97848:-1
so has part: feature:97423-97848:-1:exon
so has part: feature:96811-97132:-1:exon
so has part: feature:96415-96732:-1:exon
so has part: feature:95853-96113:-1:exon
so has part: feature:95265-95519:-1:exon
so has part: feature:94439-94702:-1:exon
so has part: feature:93839-94069:-1:exon
so has part: feature:93375-93638:-1:exon
so has part: feature:93181-93280:-1:exon
so has part: feature:92982-93057:-1:exon
so has part: feature:92807-92904:-1:exon
so has part: feature:92631-92688:-1:exon
so has part: feature:91905-92531:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:97423-97848:-1:exon

position:97423:-1
position: 97423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:96811-97132:-1:exon

position:96811:-1
position: 96811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:97132:-1
position: 97132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:96415-96732:-1:exon

position:96415:-1
position: 96415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:96732:-1
position: 96732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:95853-96113:-1:exon

position:95853:-1
position: 95853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:96113:-1
position: 96113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:95265-95519:-1:exon

position:95265:-1
position: 95265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:95519:-1
position: 95519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:94439-94702:-1:exon

position:94439:-1
position: 94439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:94702:-1
position: 94702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:93839-94069:-1:exon

position:93839:-1
position: 93839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:94069:-1
position: 94069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:93375-93638:-1:exon

position:93375:-1
position: 93375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:93638:-1
position: 93638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:93181-93280:-1:exon

position:93181:-1
position: 93181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:93280:-1
position: 93280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:92982-93057:-1:exon

position:92982:-1
position: 92982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:93057:-1
position: 93057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:92807-92904:-1:exon

position:92807:-1
position: 92807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:92904:-1
position: 92904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:92631-92688:-1:exon

position:92631:-1
position: 92631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:92688:-1
position: 92688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:91905-92531:-1:exon

position:92531:-1
position: 92531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CD22
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: CD22
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: B-cell receptor CD22
translation: MGWPPRTLGPLGLGGVYGVAARTLEPLGLGGLWGGPWTSSFPLEPRAYGEAPTATKTPGEGGRKWARLPLSGGGRWHPDAWAPPVPQRGGEWGWGQTQTLGTPNAWVPQTPGSHPPVQGLWSPQPCGSSSASSSSCQVGTSTRLPALRWLQKPVYDHDRRDYVGGLLASTATGATSSRARIRLAASPRPHAPTATTAYAEGDCSLVLSHVRAEDAGEYGLRLEANGSRPRHGLRWFHKVVLNVTDAPPAPHLWPDPQPLVEGRTTTLGCWVPPVCPEDTVTLAWDGPASKVAGAKVQAWTPPDHAMVPSAIGISLDFNPTWYHDKSNLSCLLRGADGKTVAQATRQLQVHYAPRDVRVEVTPASPVREGWEVTLSCHDSANPPSSVYSWSLNGLRLSSSTDKLLLRSAQVHDGGTYHCRATNAVGSVESHPTDLEVYYAPRDVRVEVTSPVCEGKEVTLKCRDSANPPSHTYAWILEGQILPHSSAQFRLWPVREVDGGSYRCQATNDIGTADSPPTFLEVYYQPRNATLTVLNPLPVLAGTRVSLHCELGPAHPPPSAILWLRNDRHQASTTGPIFSFTAEPTRASTYRCVGQNVAGFTQSPPLAVIVWWGSWWLGEAQCGYTARLVWPEPPLYNISWFKGGQRLPASGPRLLLPGPEPTDSGTYICEVRNVAGAARSAPTTLNILFGPRSVELVPDPGEDVYEMTSVVLHCRVSAQPLPDVFEWFRDGRTLGRASKDRWVLSAVGIQESGRYRCRATNSITSADSPDVTITVYYTRATILRKTFLGLGVGLGSLLLLGALGCFLRRRWQRQMAADEEPVVEPSGTFFLRNKKPRPPASPQPPHSADDTISYSSLVSPPGSGPVPRVQGDTVVYSVLKRNDGATKATEGPDYENVPSGPRSRAGDRDGDRDGTLLYAALALSPPVTAQEHAGGMEDAVEYAALRH
SIO_010081: CD22
subclass of: SO_0000673
so part of: CD22
location: complement(join(92349..92531,92631..92688,92807..92904,92982..93057,93181..93280,93375..93638,93839..94069,94439..94702,95265..95519,95853..96113,96415..96732,96811..97132,97423..97833))
location: region:92349-97833:-1
so has part: feature:97423-97833:-1:exon
so has part: feature:96811-97132:-1:exon
so has part: feature:96415-96732:-1:exon
so has part: feature:95853-96113:-1:exon
so has part: feature:95265-95519:-1:exon
so has part: feature:94439-94702:-1:exon
so has part: feature:93839-94069:-1:exon
so has part: feature:93375-93638:-1:exon
so has part: feature:93181-93280:-1:exon
so has part: feature:92982-93057:-1:exon
so has part: feature:92807-92904:-1:exon
so has part: feature:92631-92688:-1:exon
so has part: feature:92349-92531:-1:exon

XP_038025273.1
type: Protein
SIO_000068: ncbiprotein

position:92349:-1
position: 92349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:97833:-1
position: 97833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97423-97833:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:96811-97132:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:96415-96732:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:95853-96113:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:95265-95519:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:94439-94702:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:93839-94069:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:93375-93638:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:93181-93280:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:92982-93057:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:92807-92904:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:92631-92688:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:92349-92531:-1:exon

ATP4A
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
gene: ATP4A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 98320..104969
location: region:98320-104969:1
so has part: feature:98320-104969:1:exon
subclass of: SO_0000010

119714257
type: Gene
SIO_000068: ncbigene

position:98320:1
position: 98320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:104969:1
position: 104969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:98320-104969:1:exon

ATP4A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: ATP4A
product: ATPase H+/K+ transporting subunit alpha
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038169346.1
SIO_010081: ATP4A
subclass of: SO_0000673
so part of: ATP4A
location: join(98320..98852,99119..99226,99520..99579,99797..100000,100433..100546,100635..100769,100869..100986,101059..101327,101639..101837,101916..102025,102119..102253,102363..102543,102983..103152,103413..103549,103634..103784,103968..104136,104223..104377,104458..104581,104691..104969)
location: region:98320-104969:1
so has part: feature:98320-98852:1:exon
so has part: feature:99119-99226:1:exon
so has part: feature:99520-99579:1:exon
so has part: feature:99797-100000:1:exon
so has part: feature:100433-100546:1:exon
so has part: feature:100635-100769:1:exon
so has part: feature:100869-100986:1:exon
so has part: feature:101059-101327:1:exon
so has part: feature:101639-101837:1:exon
so has part: feature:101916-102025:1:exon
so has part: feature:102119-102253:1:exon
so has part: feature:102363-102543:1:exon
so has part: feature:102983-103152:1:exon
so has part: feature:103413-103549:1:exon
so has part: feature:103634-103784:1:exon
so has part: feature:103968-104136:1:exon
so has part: feature:104223-104377:1:exon
so has part: feature:104458-104581:1:exon
so has part: feature:104691-104969:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:98320-98852:1:exon

position:98852:1
position: 98852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:99119-99226:1:exon

position:99119:1
position: 99119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:99226:1
position: 99226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:99520-99579:1:exon

position:99520:1
position: 99520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:99579:1
position: 99579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:99797-100000:1:exon

position:99797:1
position: 99797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:100000:1
position: 100000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:100433-100546:1:exon

position:100433:1
position: 100433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:100546:1
position: 100546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:100635-100769:1:exon

position:100635:1
position: 100635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:100769:1
position: 100769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:100869-100986:1:exon

position:100869:1
position: 100869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:100986:1
position: 100986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:101059-101327:1:exon

position:101059:1
position: 101059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:101327:1
position: 101327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:101639-101837:1:exon

position:101639:1
position: 101639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:101837:1
position: 101837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:101916-102025:1:exon

position:101916:1
position: 101916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:102025:1
position: 102025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:102119-102253:1:exon

position:102119:1
position: 102119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:102253:1
position: 102253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:102363-102543:1:exon

position:102363:1
position: 102363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:102543:1
position: 102543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:102983-103152:1:exon

position:102983:1
position: 102983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:103152:1
position: 103152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:103413-103549:1:exon

position:103413:1
position: 103413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:103549:1
position: 103549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:103634-103784:1:exon

position:103634:1
position: 103634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:103784:1
position: 103784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:103968-104136:1:exon

position:103968:1
position: 103968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:104136:1
position: 104136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:104223-104377:1:exon

position:104223:1
position: 104223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:104377:1
position: 104377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:104458-104581:1:exon

position:104458:1
position: 104458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:104581:1
position: 104581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:104691-104969:1:exon

position:104691:1
position: 104691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ATP4A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: ATP4A
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: potassium-transporting ATPase alpha chain 1
translation: MGKEESYELGPRGPAAPKAPKGRGRRKQERLEDMKKEMDVDDHKLELPDLEAKYSTSITKGLVGAVAAERLLRDGPNELRPPRGTPECVKFGRQLAGGLQCLMWVAAAICLIAYGVQEGQGDRGSADNLYLAIALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIREGDKLQINANELVVGDLVEIKGGDRVPADIRIISAQGCKVDNSSLTGESEPQTRSPECTHDSPLETRNIAFFSTMCLEGTATGLVINTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAIFFGATFFVVAMVIGYPFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLARKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVAHLWFDNQIHTADTTEDQSGQSFDQSSETWTLLSRVVTLCNRAQFKAGQENVPVAKREVIGDASETALLKFAEVTVGTVSEARGRFPKVAELPFNSTNKFQLSVHAAGDRQLLVLKGAPERVLERCSTVMIKGQELPLDAQWREAFEGAYADLGGRGERVLGFCARWLPAGTVAAGTDPEALPEVAVGLCFAGLVAMIDPPRATVPRAVLKCRTAGIRVIMVTGDHPITAKAIAAAVGIISEGSETPEDVAARLRVPLEQVDPRQARARVVTGAELAGMEPGVLEGILRAHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKRADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITASVPLPLGCITILFIELCTDIFPSVSLAYERAESDIMHLKPRNPRRDRLVNEPLAAYSYFQIGAIQSFAGFTDYFVAMAQEGWWPLLCLGLRPRWEDTHEQELQDSYGQQWVRAAPFGPILALFGPMWSLFSPIQLHMAPMWPRMVSIQPHTAS
SIO_010081: ATP4A
subclass of: SO_0000673
so part of: ATP4A
location: join(98841..98852,99119..99226,99520..99579,99797..100000,100433..100546,100635..100769,100869..100986,101059..101327,101639..101837,101916..102025,102119..102253,102363..102543,102983..103152,103413..103549,103634..103784,103968..104136,104223..104377,104458..104581,104691..104969)
location: region:98841-104969:1
so has part: feature:98841-98852:1:exon
so has part: feature:99119-99226:1:exon
so has part: feature:99520-99579:1:exon
so has part: feature:99797-100000:1:exon
so has part: feature:100433-100546:1:exon
so has part: feature:100635-100769:1:exon
so has part: feature:100869-100986:1:exon
so has part: feature:101059-101327:1:exon
so has part: feature:101639-101837:1:exon
so has part: feature:101916-102025:1:exon
so has part: feature:102119-102253:1:exon
so has part: feature:102363-102543:1:exon
so has part: feature:102983-103152:1:exon
so has part: feature:103413-103549:1:exon
so has part: feature:103634-103784:1:exon
so has part: feature:103968-104136:1:exon
so has part: feature:104223-104377:1:exon
so has part: feature:104458-104581:1:exon
so has part: feature:104691-104969:1:exon

XP_038025274.1
type: Protein
SIO_000068: ncbiprotein

position:98841:1
position: 98841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:98841-98852:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:99119-99226:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:99520-99579:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:99797-100000:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:100433-100546:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:100635-100769:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:100869-100986:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:101059-101327:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:101639-101837:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:101916-102025:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:102119-102253:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:102363-102543:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:102983-103152:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:103413-103549:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:103634-103784:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:103968-104136:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:104223-104377:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:104458-104581:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:104691-104969:1:exon

LOC119714263
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
gene: LOC119714263
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 105208..108308
location: region:105208-108308:1
so has part: feature:105208-108308:1:exon
subclass of: SO_0000010

119714263
type: Gene
SIO_000068: ncbigene

position:105208:1
position: 105208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:108308:1
position: 108308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:105208-108308:1:exon

LOC119714263
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: LOC119714263
product: glyceraldehyde-3-phosphate dehydrogenase 2-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 122 samples with support for all annotated introns
transcript id: XM_038169355.1
SIO_010081: LOC119714263
subclass of: SO_0000673
so part of: LOC119714263
location: join(105208..105364,105615..105711,105791..105897,106312..106402,106624..106742,106819..106900,106996..107146,107522..107683,107768..107865,107963..108308)
location: region:105208-108308:1
so has part: feature:105208-105364:1:exon
so has part: feature:105615-105711:1:exon
so has part: feature:105791-105897:1:exon
so has part: feature:106312-106402:1:exon
so has part: feature:106624-106742:1:exon
so has part: feature:106819-106900:1:exon
so has part: feature:106996-107146:1:exon
so has part: feature:107522-107683:1:exon
so has part: feature:107768-107865:1:exon
so has part: feature:107963-108308:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:105208-105364:1:exon

position:105364:1
position: 105364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:105615-105711:1:exon

position:105615:1
position: 105615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:105711:1
position: 105711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:105791-105897:1:exon

position:105791:1
position: 105791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:105897:1
position: 105897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:106312-106402:1:exon

position:106312:1
position: 106312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:106402:1
position: 106402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:106624-106742:1:exon

position:106624:1
position: 106624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:106742:1
position: 106742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:106819-106900:1:exon

position:106819:1
position: 106819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:106900:1
position: 106900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:106996-107146:1:exon

position:106996:1
position: 106996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:107146:1
position: 107146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:107522-107683:1:exon

position:107522:1
position: 107522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:107683:1
position: 107683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:107768-107865:1:exon

position:107768:1
position: 107768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:107865:1
position: 107865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:107963-108308:1:exon

position:107963:1
position: 107963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC119714263
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: LOC119714263
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: glyceraldehyde-3-phosphate dehydrogenase 2-like
translation: MAELTIGINGFGRIGRLVLRACLEKGLRVVAINDPFIDLNYMVYMFKYDSTHGRFGGEVKAEDGKLVVDGAEISVFQCMKPSEIPWGDAGALYVVESTGVFLTVDKASAHLQGGARRVVISAPSPDAPMFVMGVNEDAYDPATMPVVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAYTATQKTVDGPSGKAWRDGRGAHQNIIPAATGAAKAVXQVIPELNGRLTGMAFRVPVADVSVVDLTCRLAXPPSYGDIKDAVKRAAAGPLAGILGYTEDQVVSSDFVGDSHSSIFDAAAGIALSDNFVKLVAWYDNEYGYSNRVADLLSHIYSREI
SIO_010081: LOC119714263
subclass of: SO_0000673
so part of: LOC119714263
location: join(105336..105364,105615..105711,105791..105897,106312..106402,106624..106742,106819..106900,106996..107146,107522..107683,107768..107865,107963..108035)
location: region:105336-108035:1
so has part: feature:105336-105364:1:exon
so has part: feature:105615-105711:1:exon
so has part: feature:105791-105897:1:exon
so has part: feature:106312-106402:1:exon
so has part: feature:106624-106742:1:exon
so has part: feature:106819-106900:1:exon
so has part: feature:106996-107146:1:exon
so has part: feature:107522-107683:1:exon
so has part: feature:107768-107865:1:exon
so has part: feature:107963-108035:1:exon

XP_038025283.1
type: Protein
SIO_000068: ncbiprotein

position:105336:1
position: 105336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:108035:1
position: 108035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:105336-105364:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:105615-105711:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:105791-105897:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:106312-106402:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:106624-106742:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:106819-106900:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:106996-107146:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:107522-107683:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:107768-107865:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:107963-108035:1:exon

TMEM147
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
gene: TMEM147
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 108737..112044
location: region:108737-112044:1
so has part: feature:108737-112044:1:exon
subclass of: SO_0000010

119714258
type: Gene
SIO_000068: ncbigene

position:108737:1
position: 108737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:112044:1
position: 112044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:108737-112044:1:exon

TMEM147
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: TMEM147
product: transmembrane protein 147
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 83% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038169347.1
SIO_010081: TMEM147
subclass of: SO_0000673
so part of: TMEM147
location: join(108737..108916,109777..109845,109958..110023,110103..110239,110631..110715,111045..111166,111732..111901,111980..112044)
location: region:108737-112044:1
so has part: feature:108737-108916:1:exon
so has part: feature:109777-109845:1:exon
so has part: feature:109958-110023:1:exon
so has part: feature:110103-110239:1:exon
so has part: feature:110631-110715:1:exon
so has part: feature:111045-111166:1:exon
so has part: feature:111732-111901:1:exon
so has part: feature:111980-112044:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:108737-108916:1:exon

position:108916:1
position: 108916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:109777-109845:1:exon

position:109777:1
position: 109777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:109845:1
position: 109845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:109958-110023:1:exon

position:109958:1
position: 109958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:110023:1
position: 110023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:110103-110239:1:exon

position:110103:1
position: 110103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:110239:1
position: 110239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:110631-110715:1:exon

position:110631:1
position: 110631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:110715:1
position: 110715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:111045-111166:1:exon

position:111045:1
position: 111045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:111166:1
position: 111166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:111732-111901:1:exon

position:111732:1
position: 111732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:111901:1
position: 111901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:111980-112044:1:exon

position:111980:1
position: 111980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TMEM147
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: TMEM147
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: transmembrane protein 147
translation: MTLFHFGNCFALAYCPYFITYKCSGLSEYSAFWRXVQAGATYLLVQLGKMLFLATFFPTWEGPSGGYDLVGEFLKATVDVADLGGLQLALGRGAGKGEHRILVAAMGWATAELLTSRCVPLWVGARGIEFDWRHVQMGLDSNISLVRHVAAAALLWASGRHDLPPRLRLPLGGLLVAAAYEGFLTGWVGQALALGPWGRWGCGRGGSGAGAGGAAAAGAPPAPPLNKARGVPDSFIVTIGGGVLGWVPLSLGGVLGPGVWGGF
SIO_010081: TMEM147
subclass of: SO_0000673
so part of: TMEM147
location: join(108840..108916,109777..109845,109958..110023,110103..110239,110631..110715,111045..111166,111732..111901,111980..112044)
location: region:108840-112044:1
so has part: feature:108840-108916:1:exon
so has part: feature:109777-109845:1:exon
so has part: feature:109958-110023:1:exon
so has part: feature:110103-110239:1:exon
so has part: feature:110631-110715:1:exon
so has part: feature:111045-111166:1:exon
so has part: feature:111732-111901:1:exon
so has part: feature:111980-112044:1:exon

XP_038025275.1
type: Protein
SIO_000068: ncbiprotein

position:108840:1
position: 108840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:108840-108916:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:109777-109845:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:109958-110023:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:110103-110239:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:110631-110715:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:111045-111166:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:111732-111901:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:111980-112044:1:exon

LOC119714259
type: Gene
subclass of: SO_0000704
RO_0002162: 8839
gene: LOC119714259
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(112012..112849)
location: region:112012-112849:-1
so has part: feature:112012-112849:-1:exon
subclass of: SO_0000010

119714259
type: Gene
SIO_000068: ncbigene

position:112012:-1
position: 112012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:112849:-1
position: 112849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:112012-112849:-1:exon

LOC119714259
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 8839
gene: LOC119714259
product: potassium-transporting ATPase alpha chain 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 88% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XM_038169348.1
SIO_010081: LOC119714259
subclass of: SO_0000673
so part of: LOC119714259
location: complement(join(112012..112138,112243..112334,112409..112510,112599..112849))
location: region:112012-112849:-1
so has part: feature:112599-112849:-1:exon
so has part: feature:112409-112510:-1:exon
so has part: feature:112243-112334:-1:exon
so has part: feature:112012-112138:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:112599-112849:-1:exon

position:112599:-1
position: 112599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:112409-112510:-1:exon

position:112409:-1
position: 112409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:112510:-1
position: 112510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:112243-112334:-1:exon

position:112243:-1
position: 112243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:112334:-1
position: 112334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:112012-112138:-1:exon

position:112138:-1
position: 112138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119714259
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 8839
gene: LOC119714259
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: potassium-transporting ATPase alpha chain 1-like
translation: MAHTAPYGSHTQPPPYSPIQPHTALYARSPPPDPAVSPQTFEQRRYQQYTCYTVFFISIEMCQIADVLIRKTRRLSLLQQGLFRNHILVIAIVFQVSIGCFLCYCPGMPNIFNFMPIRFQWWFVPMPFGLLILIYDEIRKLGVRRHPGSWWDRELYY
SIO_010081: LOC119714259
subclass of: SO_0000673
so part of: LOC119714259
location: complement(join(112110..112138,112243..112334,112409..112510,112599..112849))
location: region:112110-112849:-1
so has part: feature:112599-112849:-1:exon
so has part: feature:112409-112510:-1:exon
so has part: feature:112243-112334:-1:exon
so has part: feature:112110-112138:-1:exon

XP_038025276.1
type: Protein
SIO_000068: ncbiprotein

position:112110:-1
position: 112110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:112599-112849:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:112409-112510:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:112243-112334:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:112110-112138:-1:exon