Pseudoalteromonas xiamenensis strain STKMTI.2 plasmid unnamed4, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.
Complete Genome of Pseudoalteromonas xiamenensis STKMTI.2, a new potential marine bacterium producing anti-Vibrio compounds
Submitted (22-MAR-2021) fisheries, universitas gadjah mada, jalan flora, Sleman, Yogyakarta 55281, Indonesia
REFSEQ INFORMATION: The reference sequence is identical to\nCP072134.1.\nBacteria and source DNA available from Laboratory of Fish Health\nand Environmental Management, Fisheries Department, University of\nGadjah Mada, Yogyakarta.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 14-DEC-2020\nAssembly Method :: flye v. 2-sept-2020\nAssembly Name :: Flye software version 2.8.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 109.0x\nSequencing Technology :: Oxford Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 05:05:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,421\nCDSs (total) :: 4,288\nGenes (coding) :: 3,853\nCDSs (with protein) :: 3,853\nGenes (RNA) :: 133\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 104\nncRNAs :: 4\nPseudo Genes (total) :: 435\nCDSs (without protein) :: 435\nPseudo Genes (ambiguous residues) :: 0 of 435\nPseudo Genes (frameshifted) :: 402 of 435\nPseudo Genes (incomplete) :: 29 of 435\nPseudo Genes (internal stop) :: 17 of 435\nPseudo Genes (multiple problems) :: 11 of 435\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010375653.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0005525 - GTP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_006955876.1
COORDINATES: protein motif:HMM:NF015531.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014081.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: similar to AA sequence:RefSeq:WP_020796402.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001741575.1
COORDINATES: protein motif:HMM:NF024573.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001900011.1
COORDINATES: protein motif:HMM:NF013698.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:NF013166.2
COORDINATES: protein motif:HMM:NF012514.2
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF019237.2
COORDINATES: similar to AA sequence:RefSeq:WP_041205574.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF013069.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012698.2
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF018352.2
COORDINATES: protein motif:HMM:NF012876.2
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010377655.1
COORDINATES: similar to AA sequence:RefSeq:WP_010365968.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016710464.1
COORDINATES: similar to AA sequence:RefSeq:WP_016710465.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024116.2
COORDINATES: protein motif:HMM:NF017300.2
GO:0006274 - DNA replication termination [Evidence IEA]
DNA replication terminus site-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013576637.1
GO:0030261 - chromosome condensation [Evidence IEA]
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008983482.1
COORDINATES: similar to AA sequence:RefSeq:WP_016793133.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: similar to AA sequence:RefSeq:WP_006009008.1
COORDINATES: similar to AA sequence:RefSeq:WP_006009007.1
COORDINATES: similar to AA sequence:RefSeq:WP_005968298.1
COORDINATES: similar to AA sequence:RefSeq:WP_011846204.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF016071.2
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611500.1
COORDINATES: protein motif:HMM:NF037161.2
COORDINATES: similar to AA sequence:RefSeq:WP_000009888.1
lecithin retinol acyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611499.1
COORDINATES: similar to AA sequence:RefSeq:WP_010382512.1
GO:0015267 - channel activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611921.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019030080.1
COORDINATES: protein motif:HMM:NF012245.2