Pseudoalteromonas xiamenensis strain STKMTI.2 plasmid unnamed2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.
Complete Genome of Pseudoalteromonas xiamenensis STKMTI.2, a new potential marine bacterium producing anti-Vibrio compounds
Submitted (22-MAR-2021) fisheries, universitas gadjah mada, jalan flora, Sleman, Yogyakarta 55281, Indonesia
REFSEQ INFORMATION: The reference sequence is identical to\nCP072132.1.\nBacteria and source DNA available from Laboratory of Fish Health\nand Environmental Management, Fisheries Department, University of\nGadjah Mada, Yogyakarta.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 14-DEC-2020\nAssembly Method :: flye v. 2-sept-2020\nAssembly Name :: Flye software version 2.8.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 109.0x\nSequencing Technology :: Oxford Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 05:05:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,421\nCDSs (total) :: 4,288\nGenes (coding) :: 3,853\nCDSs (with protein) :: 3,853\nGenes (RNA) :: 133\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 104\nncRNAs :: 4\nPseudo Genes (total) :: 435\nCDSs (without protein) :: 435\nPseudo Genes (ambiguous residues) :: 0 of 435\nPseudo Genes (frameshifted) :: 402 of 435\nPseudo Genes (incomplete) :: 29 of 435\nPseudo Genes (internal stop) :: 17 of 435\nPseudo Genes (multiple problems) :: 11 of 435\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010382180.1
frameshifted; incomplete; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024642.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR01447.1
GO:0009338 - exodeoxyribonuclease V complex [Evidence IEA]
GO:0008854 - exodeoxyribonuclease V activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014609706.1
GO:0004180 - carboxypeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005493717.1
COORDINATES: similar to AA sequence:RefSeq:WP_005493718.1
GO:0051219 - phosphoprotein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010365065.1
COORDINATES: similar to AA sequence:RefSeq:WP_011328563.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005493723.1
COORDINATES: similar to AA sequence:RefSeq:WP_017218137.1
COORDINATES: similar to AA sequence:RefSeq:WP_005493725.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017219139.1
COORDINATES: similar to AA sequence:RefSeq:WP_005493727.1
COORDINATES: similar to AA sequence:RefSeq:WP_010363210.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007375447.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010363213.1
COORDINATES: similar to AA sequence:RefSeq:WP_006962737.1
COORDINATES: similar to AA sequence:RefSeq:WP_013465088.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005493734.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0071586 - CAAX-box protein processing [Evidence IEA]
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_005493736.1
COORDINATES: similar to AA sequence:RefSeq:WP_010385489.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010560344.1
GO:0004834 - tryptophan synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010554212.1
COORDINATES: similar to AA sequence:RefSeq:WP_010557516.1
GO:0004425 - indole-3-glycerol-phosphate synthase activity [Evidence IEA]; GO:0004640 - phosphoribosylanthranilate isomerase activity [Evidence IEA]
GO:0006568 - tryptophan metabolic process [Evidence IEA]
bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF
COORDINATES: similar to AA sequence:RefSeq:WP_010378567.1
GO:0004048 - anthranilate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005493745.1
GO:0016787 - hydrolase activity [Evidence IEA]
Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26.; frameshifted; incomplete; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
gamma-glutamyl-gamma-aminobutyrate hydrolase family protein